BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037972
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1
Length = 302
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 30/195 (15%)
Query: 14 FDVEEKSMPAAGYAY-INEANFL---RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFIS 69
F VE + MP++ Y + + + FL R +AI I Q S+ + + YLA+NY DRF+S
Sbjct: 32 FLVEFQHMPSSHYFHSLKSSAFLLSNRNQAISSITQYSRKFD-DPSLTYLAVNYLDRFLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSD------FMAGNNLPRNYSKHAL 123
+P+ + L L + C+ ++ K+R S SD F + R
Sbjct: 91 SEDMPQSKPWI---LKLISLSCVSLSAKMRKPDMSVSDLPVEGEFFDAQMIER------- 140
Query: 124 NMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG---IKRRH-----VNRIIIEAQADLS 175
ME IL L+WR R+V +F+ FF+++ K + +H + + Q D+S
Sbjct: 141 -MENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDIS 199
Query: 176 FASCKPSVIAAAALV 190
F KPSVIA AAL+
Sbjct: 200 FLEFKPSVIAGAALL 214
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
Length = 339
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDFMAGNNLPR 116
YLA+NY DRF+ LPE G + L A CL +A K+ + S DF
Sbjct: 104 YLAVNYMDRFLYARRLPETSGW---PMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYL 160
Query: 117 NYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQA 172
+K MEL +L+ L+WR R+V +F+ FF + G H II+
Sbjct: 161 FEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHATEIILSNIK 220
Query: 173 DLSFASCKPSVIAAAALVHV 192
+ SF PS IAAAA++ V
Sbjct: 221 EASFLEYWPSSIAAAAILCV 240
>sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1
Length = 320
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 56 IPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLP 115
+ YLALNY DR++SK L N +LA +C + A R + S +D G
Sbjct: 78 VAYLALNYVDRYLSKRQL-ACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGEEFM 136
Query: 116 RNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAK--------GIKRRHVNRII 167
+ +K ME +LN LEWR+R+V + F+ FFL+ + IK R V+ ++
Sbjct: 137 FDEAK-IQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVD-LL 194
Query: 168 IEAQADLSFASCKPSV 183
+ Q ++ A PSV
Sbjct: 195 LRVQPEVKMAEFSPSV 210
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2
Length = 308
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 59 LALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDFMAGNNLPRN 117
LA+NY DRF+S H LP G + L L A CL +A K+ + D G+
Sbjct: 101 LAMNYLDRFLSVHDLPSGKGWI---LQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVF 157
Query: 118 YSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISS------AKGIKRRHVNRIIIEAQ 171
+K MEL +LN L+WR RA+ +++ +FL S + + R + ++I
Sbjct: 158 EAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSL-QVIASTT 216
Query: 172 ADLSFASCKPSVIAAAALVHV 192
+ F +PS +AAA + V
Sbjct: 217 KGIDFLEFRPSEVAAAVALSV 237
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2
Length = 308
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 48 KSNKRNAYIP---YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF- 103
K + N ++P YLA+NY DRF+S LPE G L +A CL +A K+ +
Sbjct: 91 KVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVA---CLSLAAKMEETLVP 147
Query: 104 SFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHV 163
S D + + ME IL L WR R+V F+ FF +H+
Sbjct: 148 SLLDLQVECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFF---------ACKHI 198
Query: 164 -NRIIIEAQADLSFASCKPSVIAAAALV 190
N ++ A +D+ F PS +AAAA++
Sbjct: 199 SNAMVQNANSDIQFLDHCPSSMAAAAVL 226
>sp|P50755|CCND1_XENLA G1/S-specific cyclin-D1 OS=Xenopus laevis GN=ccnd1 PE=2 SV=1
Length = 291
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 17 EEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFISKHT 72
EE S P+ Y + L P K++ L+ + K + LA+NY DRF+S
Sbjct: 33 EETSCPSMSYFKCVQKEIL-PNMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSVEP 91
Query: 73 LPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNG 132
L + L L C+ +A K+++ ++ + L MEL++LN
Sbjct: 92 LRKSW------LQLLGATCMFLASKMKETIPLTAEKLCIYTDNSIRPDELLIMELRVLNK 145
Query: 133 LEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAA 188
L+W +V +F+ FLN K I R+H + D++F S PS+IAA +
Sbjct: 146 LKWDLASVTPHDFIEHFLNKMPLTEDTKQIIRKHAQTFVALCATDVNFISNPPSMIAAGS 205
Query: 189 L 189
+
Sbjct: 206 V 206
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2
Length = 298
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 59 LALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDFMAGNNLPRN 117
LA+NY DRF+S H LP G +LA CL +A K+ + + G +
Sbjct: 92 LAMNYLDRFLSVHDLPS--GKAWTVQLLAV-ACLSLAAKIEETNVPELMQLQVGAPMFVF 148
Query: 118 YSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKR----RHVNR---IIIEA 170
+K MEL +LN L WR RAV ++V +FL S G + R V R +I
Sbjct: 149 EAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFL--SKINGYDQEPHSRLVTRSLQVIAST 206
Query: 171 QADLSFASCKPSVIAAAALVHV 192
+ F + S IAAA + V
Sbjct: 207 TKGIDFLEFRASEIAAAVALSV 228
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2
Length = 383
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLII 94
+R AI I + ++ YLA+NY DRF+S++ LPE + L +A CL I
Sbjct: 109 VRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVA---CLSI 165
Query: 95 AWKLRDQSF-SFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFL-NI 152
A K+ + D G + MEL +L L WR +AV +++ +FL +
Sbjct: 166 AAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKL 225
Query: 153 SSAKGIKRRHVNR---IIIEAQADLSFASCKPSVI 184
+S R + R +I+ A F +PS I
Sbjct: 226 NSGNAAPRSWLLRSSELILRIAAGTGFLEFRPSEI 260
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2
Length = 354
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDFMAGNNLPR 116
YLA++Y DRF+S H LP GN +LA CL +A K+ + S D +
Sbjct: 138 YLAVSYMDRFLSLHRLP---GNGWAMQLLAVT-CLSLAAKMEETLVPSILDLQMEDARYI 193
Query: 117 NYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQA---- 172
+ MEL +L+ L+WR R++ F+ F + G +H+ +I +A
Sbjct: 194 FEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNG---KHIRELIHQATQVTLA 250
Query: 173 ---DLSFASCKPSVIAAAALV 190
D F PS IAAAA++
Sbjct: 251 TIHDTEFLDHCPSSIAAAAVL 271
>sp|Q9SN11|CCD33_ARATH Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1
Length = 361
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 26 YAYINEANFL---RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVED 82
Y I + FL R +A+ I + N+ LA+NYFDRFI+ +
Sbjct: 73 YDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQ 132
Query: 83 DLVLAANCCLIIAWKLRDQSFSF-SDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVV 141
L A CL +A K+ + F DF +K MEL +L+ L+WR V
Sbjct: 133 ---LTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVT 189
Query: 142 AVNFVPFFLNISSAKGIKRRH-------VNRIIIEAQADLSFASCKPSVIAAAALVHVCK 194
++ FF +I K H +++ D F S PSV+A A +V V +
Sbjct: 190 PIS---FFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIR 246
Query: 195 LLLRDENGERPDAKRCRESLIDSTYVDEDSLDS------FCTMLDHMCCRKKM 241
D K C E++ S + +DS + +LDH +K+M
Sbjct: 247 -----------DLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVLDHSPSKKRM 288
>sp|Q90459|CCND1_DANRE G1/S-specific cyclin-D1 OS=Danio rerio GN=ccnd1 PE=2 SV=1
Length = 291
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
EE +P+ Y + + P+ K++ L+ + K + LA+NY DRF+S
Sbjct: 32 LKAEENYLPSPNYFKCVQKEIV-PKMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS 90
Query: 70 ----KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNM 125
K T ++LG C+ +A K+++ ++ + L M
Sbjct: 91 VEPTKKTRLQLLGAT----------CMFLASKMKETVPLTAEKLCIYTDNSVRPGELLQM 140
Query: 126 ELQILNGLEWRSRAVVAVNFVPFFLNI----SSAKGIKRRHVNRIIIEAQADLSFASCKP 181
EL LN L+W +V +F+ FL S+K I R+H + D++F + P
Sbjct: 141 ELLALNKLKWDLASVTPHDFIEHFLAKLPIHQSSKQILRKHAQTFVALCATDVNFIASPP 200
Query: 182 SVIAAAAL 189
S+IAA ++
Sbjct: 201 SMIAAGSV 208
>sp|P55169|CCND1_CHICK G1/S-specific cyclin-D1 OS=Gallus gallus GN=CCND1 PE=2 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 15/182 (8%)
Query: 17 EEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFISKHT 72
EE P+ Y + L P K++ L+ + K + LA+NY DRF+S
Sbjct: 35 EETCSPSVSYFKCVQKEIL-PYMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSFEP 93
Query: 73 LPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQILNG 132
L + L L C+ +A K+++ ++ + L MEL ++N
Sbjct: 94 LKK------SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPDELLQMELLLVNK 147
Query: 133 LEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAA 188
L+W A+ +F+ FL K I R+H + D+ F S PS+IAA +
Sbjct: 148 LKWNLAAMTPHDFIEHFLTKMPLAEDTKQIIRKHAQTFVALCATDVKFISNPPSMIAAGS 207
Query: 189 LV 190
+V
Sbjct: 208 VV 209
>sp|P30281|CCND3_HUMAN G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2
Length = 292
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
+EE+ +P A Y + ++P K++ L+ + + + LA+NY DR++S
Sbjct: 32 LRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHAL------ 123
+ + L L C+++A KLR+ + + + Y+ HA+
Sbjct: 91 ------CVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLC------IYTDHAVSPRQLR 138
Query: 124 NMELQILNGLEWRSRAVVAVNFVPFFLNISSA----KGIKRRHVNRIIIEAQADLSFASC 179
+ E+ +L L+W AV+A +F+ F L+ S + + ++H + D +FA
Sbjct: 139 DWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMY 198
Query: 180 KPSVIAAAAL 189
PS+IA ++
Sbjct: 199 PPSMIATGSI 208
>sp|Q04827|CCND2_RAT G1/S-specific cyclin-D2 OS=Rattus norvegicus GN=Ccnd2 PE=2 SV=1
Length = 288
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 21/225 (9%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + ++R +L+ + K + LA+NY DRF++
Sbjct: 30 LTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAG 89
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
P+ L L C+ +A KL++ ++ + + L EL +L
Sbjct: 90 VPTPKT------HLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSVKPQELLEWELVVL 143
Query: 131 NGLEWRSRAVVAVNFVPFFL-NISSAK---GIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L + K + R+H I D FA PS+IA
Sbjct: 144 GKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKHAQTFIALCATDFKFAMYPPSMIAT 203
Query: 187 AAL-VHVCKLLLRDENGERPDAKRC---RESLIDSTYVDEDSLDS 227
++ +C L + E +A C E L T+ D D L +
Sbjct: 204 GSVGAAICGL----QQDEEVNALTCDALTELLTKITHTDVDCLKA 244
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1
Length = 363
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDF-MAGNNL- 114
YLA++Y DRF+S +LP+ G L +A CL +A K+ + S D + G
Sbjct: 147 YLAVSYMDRFMSSRSLPD-HGWASQLLCVA---CLSLAAKMEESSAPPLLDLQIEGTRFI 202
Query: 115 --PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRR----HVNRIII 168
PR + MEL +L L+WR R+V FV FF + G R +II+
Sbjct: 203 FEPRTIQR----MELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSRILALRACQIIL 258
Query: 169 EAQADLSFAS-CKPSVIAAAALVHV 192
A +L F + C S+ AAA L V
Sbjct: 259 SAIHELEFLNHCASSMAAAAVLFAV 283
>sp|P30280|CCND2_MOUSE G1/S-specific cyclin-D2 OS=Mus musculus GN=Ccnd2 PE=2 SV=1
Length = 289
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + ++R +L+ + K + LA+NY DRF++
Sbjct: 30 LTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAG 89
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
P+ L L C+ +A KL++ ++ + + L EL +L
Sbjct: 90 VPTPKT------HLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSVKPQELLEWELVVL 143
Query: 131 NGLEWRSRAVVAVNFVPFFL-NISSAK---GIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L + K + R+H I D FA PS+IA
Sbjct: 144 GKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKHAQTFIALCATDFKFAMYPPSMIAT 203
Query: 187 AAL-VHVCKLLLRDE-NGERPDAKRCRESLIDSTYVDEDSLDS 227
++ +C L DE N DA E L T+ D D L +
Sbjct: 204 GSVGAAICGLQQDDEVNTLTCDAL--TELLAKITHTDVDCLKA 244
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2
Length = 356
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 59 LALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFS-DFMAGNNLPRN 117
LA+NY DRF+S + LP+ + L +A CL +A K+ + S D G
Sbjct: 126 LAVNYLDRFLSLYQLPDGKDWMTQLLAVA---CLSLAAKMEETDVPQSLDLQVGEERYVF 182
Query: 118 YSKHALNMELQILNGLEWRSRAVVAVNFVPFFL 150
+K MEL +L+ L+WR +AV ++V +FL
Sbjct: 183 EAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFL 215
>sp|P30279|CCND2_HUMAN G1/S-specific cyclin-D2 OS=Homo sapiens GN=CCND2 PE=1 SV=1
Length = 289
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 13/221 (5%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + ++R +L+ + K + LA+NY DRF++
Sbjct: 31 LTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAG 90
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
P+ L L C+ +A KL++ S ++ + + L EL +L
Sbjct: 91 VPTPK------SHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVL 144
Query: 131 NGLEWRSRAVVAVNFVPFFLNISSAK----GIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L + + R+H I D FA PS+IA
Sbjct: 145 GKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIAT 204
Query: 187 AALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDS 227
++ L +DE E L T D D L +
Sbjct: 205 GSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKA 245
>sp|Q0P5D3|CCND2_BOVIN G1/S-specific cyclin-D2 OS=Bos taurus GN=CCND2 PE=2 SV=1
Length = 289
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 13/221 (5%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + ++R +L+ + K + LA+NY DRF++
Sbjct: 31 LTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAINYLDRFLAG 90
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
P+ L L C+ +A KL++ ++ + + L EL +L
Sbjct: 91 VPTPKT------HLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVL 144
Query: 131 NGLEWRSRAVVAVNFVPFFL----NISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L S + R+H I D FA PS+IA
Sbjct: 145 GKLKWNLAAVTPHDFIEHILRKLPQPSEKLSLIRKHAQTFIALCATDFKFAMYPPSMIAT 204
Query: 187 AALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDS 227
++ L +DE+ + L T D D L +
Sbjct: 205 GSVGAAICGLQQDEDVSSLTGDALVDLLAKITNTDVDCLKA 245
>sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
Length = 376
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
Query: 9 DFVKYFDVEE-KSMPAAGYAYINEANFLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRF 67
D V F EE + + Y++ R A+ IL+ + + LA+ Y D+F
Sbjct: 62 DLVTLFSKEEEQGLSCLDDVYLSTD---RKEAVGWILRVNAHYGFSTLAAVLAITYLDKF 118
Query: 68 ISKHTL----PEVLGNVEDDLVLAANCCLIIAWKLRD-QSFSFSDFMAGNNLPRNYSKHA 122
I ++L P +L L + CL +A K+ + Q DF +K
Sbjct: 119 ICSYSLQRDKPWMLQ-------LVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTI 171
Query: 123 LNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKR-------RHVNRIIIEAQADLS 175
MEL IL+ LEW+ + ++FV +I G+K +R+++ +D
Sbjct: 172 QRMELLILSTLEWKMHLITPISFVD---HIIRRLGLKNNAHWDFLNKCHRLLLSVISDSR 228
Query: 176 FASCKPSVIAAAALVHV 192
F PSV+AAA ++ +
Sbjct: 229 FVGYLPSVVAAATMMRI 245
>sp|P49706|CCND2_CHICK G1/S-specific cyclin-D2 OS=Gallus gallus GN=CCND2 PE=3 SV=1
Length = 291
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 16/199 (8%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + F+R +L+ + K + LA+NY DRF++
Sbjct: 31 LTIEERYLPQCSYFKCVQKDIQPFMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLA- 89
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
V+ + L L C+ +A KL++ ++ + + L EL +L
Sbjct: 90 -----VVPTRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVL 144
Query: 131 NGLEWRSRAVVAVNFVPFFLNI----SSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L + R+H I D +FA PS+IA
Sbjct: 145 GKLKWNLAAVTPHDFIEHILRKLPLPKDKLVLIRKHAQTFIALCATDFNFAMYPPSMIAT 204
Query: 187 AAL-VHVCKLLLRDENGER 204
++ +C L L D G+R
Sbjct: 205 GSVGAAICGLQLDD--GDR 221
>sp|Q3MHH5|CCND3_BOVIN G1/S-specific cyclin-D3 OS=Bos taurus GN=CCND3 PE=2 SV=1
Length = 292
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 86/190 (45%), Gaps = 27/190 (14%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
+EE+ +P A Y + ++P K++ L+ + + + LA+NY DR++S
Sbjct: 32 LRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHAL------ 123
+ + L L C+++A KLR+ + + + Y+ H++
Sbjct: 91 ------CVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLC------IYTDHSVSPRQLR 138
Query: 124 NMELQILNGLEWRSRAVVAVNFVPFFLNISSA----KGIKRRHVNRIIIEAQADLSFASC 179
+ E+ +L L+W AV+A +F+ L+ S + + ++H + D +FA
Sbjct: 139 DWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMY 198
Query: 180 KPSVIAAAAL 189
PS+IA ++
Sbjct: 199 PPSMIATGSI 208
>sp|Q8WNW2|CCND2_PIG G1/S-specific cyclin-D2 OS=Sus scrofa GN=CCND2 PE=2 SV=1
Length = 288
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 14/190 (7%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
+EE+ +P Y + + ++R +L+ + K + LA+NY DRF++
Sbjct: 31 LTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAINYLDRFLAG 90
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
P+ L L C+ +A KL++ ++ + + L EL +L
Sbjct: 91 VPTPKT------HLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVL 144
Query: 131 NGLEWRSRAVVAVNFVPFFL----NISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L + + R+H I D FA PS+IA
Sbjct: 145 GKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIAT 204
Query: 187 AAL-VHVCKL 195
++ +C L
Sbjct: 205 GSVGAAICGL 214
>sp|P30282|CCND3_MOUSE G1/S-specific cyclin-D3 OS=Mus musculus GN=Ccnd3 PE=2 SV=1
Length = 292
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
+EE+ +P A Y + ++P K++ L+ + + + LA+NY DR++S
Sbjct: 32 LRLEERYVPRASYFQCVQKE-IKPHMRKMLAYWMLEVCEEQRCEEDVFPLAMNYLDRYLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHAL------ 123
+ + L L CL++A KLR+ + + + Y+ A+
Sbjct: 91 ------CVPTRKAQLQLLGTVCLLLASKLRETTPLTIEKLC------IYTDQAVAPWQLR 138
Query: 124 NMELQILNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASC 179
E+ +L L+W AV+A +F+ L+ S + + ++H + D +FA
Sbjct: 139 EWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKKHAQTFLALCATDYTFAMY 198
Query: 180 KPSVIAAAAL 189
PS+IA ++
Sbjct: 199 PPSMIATGSI 208
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1
Length = 356
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSF-SDFMAGNNLPR 116
YLA+NY DRF+S LP ++ L ++ CL +A K+ + D +
Sbjct: 117 YLAVNYLDRFLSSFNLPHDESWMQQLLSVS---CLSLATKMEETVVPLPMDLQVFDAEYV 173
Query: 117 NYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLN 151
++H MEL ++ L+WR +AV +F+ +FL+
Sbjct: 174 FEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLD 208
>sp|P48961|CCND3_RAT G1/S-specific cyclin-D3 OS=Rattus norvegicus GN=Ccnd3 PE=2 SV=1
Length = 293
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 59 LALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNY 118
LA+NY DR++S + + L L CL++A KLR+ + + + Y
Sbjct: 80 LAMNYLDRYLS------CVPTRKAQLQLLGTVCLLLASKLRETTPLTIEKLC------IY 127
Query: 119 SKHAL------NMELQILNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIII 168
+ A+ E+ +L L+W AV+A +F+ L+ S + + ++H +
Sbjct: 128 TDQAMAPWQLREWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKKHAQTFLA 187
Query: 169 EAQADLSFASCKPSVIAAAAL 189
D +FA PS+IA ++
Sbjct: 188 LCATDYTFAMYPPSMIATGSI 208
>sp|P53782|CCND2_XENLA G1/S-specific cyclin-D2 OS=Xenopus laevis GN=ccnd2 PE=2 SV=1
Length = 291
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 15/222 (6%)
Query: 14 FDVEEKSMPAAGYAYINEAN---FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK 70
VEE+ +P Y + + F+R +L+ + + + +A+NY DRF++
Sbjct: 31 LTVEERYLPQCSYFKCVQKDIQPFMRRMVATWMLEVCEEQRCEEEVFPMAMNYLDRFLA- 89
Query: 71 HTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQIL 130
V+ + L L C+ +A KL++ ++ + + L EL +L
Sbjct: 90 -----VIPTRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVL 144
Query: 131 NGLEWRSRAVVAVNFVPFFLNISSAKGIK----RRHVNRIIIEAQADLSFASCKPSVIAA 186
L+W AV +F+ L K R+H I D +FA PS+IA
Sbjct: 145 GKLKWNLAAVTPHDFIEHILRKLPLPKDKLLLIRKHAQTFIALCATDFNFAMYPPSMIAT 204
Query: 187 AAL-VHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDS 227
++ +C L L D E L T D D L +
Sbjct: 205 GSVGAAICGLQL-DVGETSLSGDSLTEHLAKITSTDVDCLKA 245
>sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3
PE=3 SV=1
Length = 405
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Query: 58 YLALNYFDRFIS--KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLP 115
YLA+NY DRF+S + ++ + ++ L++A CL +A K+ + + + + N
Sbjct: 126 YLAVNYLDRFLSSVEFSVTNDMPWMQQLLIVA---CLSLAAKMEETAAPGTLDLQVCNPE 182
Query: 116 RNYSKHALN-MELQILNGLEWRSRAVVAVNFVPFFLN-ISSAKGIKRRHVNR---IIIEA 170
+ ++ ME+ +L L+WR +AV ++ FL+ I+ I ++R II+
Sbjct: 183 YVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILST 242
Query: 171 QADLSFASCKPSVIAAAALVHV 192
F +PS IA A + V
Sbjct: 243 MKATVFLRFRPSEIATAVALSV 264
>sp|Q2QMW1|CCD52_ORYSJ Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1
Length = 365
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 36 RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLP-EVLGNVEDDLVLAANCCLII 94
R A+K IL+ YLA+ YFDRF + + E + L +A C+ +
Sbjct: 100 RLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIA---CVSV 156
Query: 95 AWKLRD-QSFSFSDFMAGNNLPRNYSKHALN-MELQILNGLEWRSRAVVAVNFVPFF 149
A K+ + QS + S+F AG R + ++ MEL +L+ L WR AV +F+P F
Sbjct: 157 AAKMEEYQSPALSEFDAGGG--RVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
>sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2
Length = 342
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 17 EEKSMPAAGYAYINEANFLRPRAIKVILQNSKS----------NKRNAYIPYLALNYFDR 66
E++ +P GY + L+P + ++ S + K L++NY DR
Sbjct: 64 EQQHIPMEGYL---QRLLLQPDGLDLVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDR 120
Query: 67 FISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFS-DFMAGNNLPRNYSKHALNM 125
F+S LP+ + L +A+ L +A K+ + D + ++ M
Sbjct: 121 FLSVFDLPQEEACMTQLLAVAS---LSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRM 177
Query: 126 ELQILNGLEWRSRAVVAVNFVPFFLN 151
EL +LN L+WR +AV A +F+ ++L+
Sbjct: 178 ELAVLNALKWRMQAVTACSFIDYYLH 203
>sp|Q2KI22|CCND1_BOVIN G1/S-specific cyclin-D1 OS=Bos taurus GN=CCND1 PE=2 SV=1
Length = 295
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
EE P+ Y + L P K++ L+ + K + LA+NY DRF+S
Sbjct: 32 LKAEETCAPSVSYFKCVQKEIL-PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQI 129
+ + L L C+ +A K+++ ++ + L+MEL +
Sbjct: 91 LEPVKK------SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPDELLHMELVL 144
Query: 130 LNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASCKPSV 183
+N L+W A+ +F+ FL+ K I R+H + D+ F S PS+
Sbjct: 145 VNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202
>sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1
Length = 367
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 36 RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIA 95
R A+ +L+ + LA+NYFDRF++ L + L A L +A
Sbjct: 96 RKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQ---LVAVASLSLA 152
Query: 96 WKLRD-QSFSFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISS 154
K+ + Q D +K MEL IL+ L+WR V ++F +
Sbjct: 153 AKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFG 212
Query: 155 AKGIKR----RHVNRIIIEAQADLSFASCKPSVIAAAALVHV 192
+K ++ R R++I AD F PSV+A A ++ V
Sbjct: 213 SKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILV 254
>sp|Q64HP0|CCND1_CANFA G1/S-specific cyclin-D1 OS=Canis familiaris GN=CCND1 PE=2 SV=1
Length = 295
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 15/178 (8%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
EE P+ Y + L P K++ L+ + K + LA+NY +RF+S
Sbjct: 32 LKAEETCAPSVSYFKCVQKEIL-PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLNRFLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQI 129
+ + L L C+ +A K+++ ++ + L MEL +
Sbjct: 91 LEPVKK------SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPDELLQMELLL 144
Query: 130 LNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASCKPSV 183
+N L+W A+ +F+ FL+ K I R+H + D+ F S PS+
Sbjct: 145 VNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIRKHAQTFVALCATDVKFISNPPSM 202
>sp|Q6K1Z6|CCF21_ORYSJ Putative cyclin-F2-1 OS=Oryza sativa subsp. japonica GN=CycF2-1
PE=3 SV=2
Length = 390
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 60 ALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF----------SFSDFM 109
A++YFDRF+S LP E L L + A K DQ S+ +F
Sbjct: 219 AVSYFDRFLSARALPSY---TEHQLSLVGATAVYTAAKYEDQGTVFKLDAREIASYGEFA 275
Query: 110 AGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKR-----RHVN 164
+ ++ L ME +++ L +R A FV F S K R RH+
Sbjct: 276 S--------AQEVLAMEREMMAALGYRLGGPNAETFVEHFTRYSKGKEELRVQRLARHIA 327
Query: 165 RIIIEAQADLSFASCKPSVIAAAAL 189
+E+ L + PSV+AAA +
Sbjct: 328 DRSLESYGCLGY---LPSVVAAAVI 349
>sp|Q9LZM0|CCD71_ARATH Putative cyclin-D7-1 OS=Arabidopsis thaliana GN=CYCD7-1 PE=3 SV=1
Length = 341
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 125 MELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRH--VNRI---IIEAQADLSFASC 179
MEL IL LEWR AV + F + S G+ H +NRI +++ DL
Sbjct: 165 MELIILKALEWRVNAVTSYTFSQ---TLVSKIGMVGDHMIMNRITNHLLDVICDLKMLQY 221
Query: 180 KPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLID 216
PSV+A AA+ +L+ D K CRES+++
Sbjct: 222 PPSVVATAAI----WILMED--------KVCRESIMN 246
>sp|P39948|CCND1_RAT G1/S-specific cyclin-D1 OS=Rattus norvegicus GN=Ccnd1 PE=2 SV=1
Length = 295
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 59 LALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNY 118
LA+NY DRF+S L + L L C+ +A K+++ ++ +
Sbjct: 80 LAMNYLDRFLSLEPLKK------SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIR 133
Query: 119 SKHALNMELQILNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADL 174
+ L MEL ++N L+W A+ +F+ FL+ K I R+H + D+
Sbjct: 134 PEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEADENKQIIRKHAQTFVALCATDV 193
Query: 175 SFASCKPSVIAAAALV 190
F S PS++AA ++V
Sbjct: 194 KFISNPPSMVAAGSVV 209
>sp|Q0DQA9|CCD51_ORYSJ Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2
Length = 367
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 36 RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIA 95
R +K IL+ YLA+ YFDRF + + + L+ A C+ +A
Sbjct: 109 RRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVA--CVSLA 166
Query: 96 WKLRD-QSFSFSDFMAG-NNLPRNYSKHALN-MELQILNGLEWRSRAVVAVNFVP 147
K+ + ++ + S+F AG + +S + MEL +L+ L+WR AV +++P
Sbjct: 167 AKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLP 221
>sp|Q9Z238|CCNE2_MOUSE G1/S-specific cyclin-E2 OS=Mus musculus GN=Ccne2 PE=2 SV=1
Length = 404
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 28/151 (18%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRD------QSFSFSDFMAG 111
YLA ++FDRF+ T +V N+ L L L IA KL + Q F++ A
Sbjct: 164 YLAQDFFDRFML--TQKDVNKNM---LQLIGITSLFIASKLEEIYAPKLQEFAYVTDGAC 218
Query: 112 NNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNR------ 165
+ + L MEL IL L+W V ++++ FL + + K + + + +
Sbjct: 219 SEV------DILKMELNILKALKWELCPVTVISWLNLFLQVDAVKDVPKVLLPQYSQETF 272
Query: 166 IIIEAQADLSFASC-----KPSVIAAAALVH 191
I I DL + + ++AAAAL H
Sbjct: 273 IQIAQLLDLCILAIDSLEFQYRILAAAALCH 303
>sp|Q147G5|CCA22_ARATH Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1
Length = 436
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSD---FMAGNNL 114
YL +N DRF+S + L L C++IA K + S + F+ N
Sbjct: 228 YLTVNLIDRFLSNSYIER------QRLQLLGVSCMLIASKYEELSAPGVEEFCFITANTY 281
Query: 115 PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG----IKRRHVNRIIIEA 170
R L+ME+QILN + +R F+ F+ + A I+ ++ + E
Sbjct: 282 TR---PEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLANYLAEL 338
Query: 171 Q-ADLSFASCKPSVIAAAAL 189
+ SF PS+IAA+A+
Sbjct: 339 TLVEYSFLRFLPSLIAASAV 358
>sp|P25322|CCND1_MOUSE G1/S-specific cyclin-D1 OS=Mus musculus GN=Ccnd1 PE=1 SV=1
Length = 295
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
Query: 14 FDVEEKSMPAAGYAYINEANFLRPRAIKVI----LQNSKSNKRNAYIPYLALNYFDRFIS 69
EE P+ Y + + P K++ L+ + K + LA+NY DRF+S
Sbjct: 32 LKTEETCAPSVSYFKCVQKEIV-PSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS 90
Query: 70 KHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRNYSKHALNMELQI 129
L + L L C+ +A K+++ ++ + + L MEL +
Sbjct: 91 LEPLKK------SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLL 144
Query: 130 LNGLEWRSRAVVAVNFVPFFLN----ISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIA 185
+N L+W A+ +F+ FL+ K R+H + D+ F S PS++A
Sbjct: 145 VNKLKWNLAAMTPHDFIEHFLSKMPEADENKQTIRKHAQTFVALCATDVKFISNPPSMVA 204
Query: 186 AAALV 190
A ++V
Sbjct: 205 AGSVV 209
>sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3
Length = 361
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 22/159 (13%)
Query: 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLV--LAANCCL 92
+R +A+ IL+ L++NY DRF++ + LP+ + D L A CL
Sbjct: 96 VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPK-----DKDWAAQLLAVSCL 150
Query: 93 IIAWKLRDQSF-SFSDFMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLN 151
+A K+ + D + +K MEL ++ L WR +A+ +F+ +F++
Sbjct: 151 SLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVD 210
Query: 152 ISSAKGIKRRHV--------NRIIIEAQADLSFASCKPS 182
S HV +R I+ + F +PS
Sbjct: 211 KISG------HVSENLIYRSSRFILNTTKAIEFLDFRPS 243
>sp|Q1PFW3|CCSDS_ARATH Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2
Length = 578
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLPRN 117
+L + DRF+SK + E L+L L +A ++ + ++ N +N
Sbjct: 409 FLGVGLLDRFLSKGSFKS-----ERTLILVGIASLTLATRIEENQ-PYNSIRKRNFTIQN 462
Query: 118 --YSKH-ALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADL 174
YS+H + ME + L ++ NF+ F+L + A R + + + +D
Sbjct: 463 LRYSRHEVVAMEWLVQEVLNFKCFTPTIFNFLWFYLKAARANPEVERKAKSLAVTSLSDQ 522
Query: 175 SFASCKPSVIAAAALVHVC 193
+ PS +AAA +V C
Sbjct: 523 TQLCFWPSTVAAALVVLAC 541
>sp|Q9FVX0|CCA12_ARATH Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2
Length = 442
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDF--MAGNNL 114
YLA+NY DR+++ + + + +L L C++IA K + DF + N
Sbjct: 234 YLAVNYVDRYLTGNAIN------KQNLQLLGVTCMMIAAKYEEVCVPQVEDFCYITDNTY 287
Query: 115 PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQA-- 172
RN L ME +LN L++ A F+ FL +A+G R+ V ++ E A
Sbjct: 288 LRN---ELLEMESSVLNYLKFELTTPTAKCFLRRFLR--AAQG--RKEVPSLLSECLACY 340
Query: 173 -------DLSFASCKPSVIAAAAL 189
D + PS++AA+A+
Sbjct: 341 LTELSLLDYAMLRYAPSLVAASAV 364
>sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
Length = 454
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQ-SFSFSDFMAGNNLPR 116
YL +N DRF++ T+P +L L +++A K + +DF+ ++ R
Sbjct: 248 YLTINIIDRFLAVKTVPR------RELQLVGISAMLMASKYEEIWPPEVNDFVCLSD--R 299
Query: 117 NYS-KHALNMELQILNGLEWRSRAVVAVNFVPFFLNIS 153
Y+ +H L ME ILN LEW + F+ F+ S
Sbjct: 300 AYTHEHILTMEKTILNKLEWTLTVPTPLVFLVRFIKAS 337
>sp|Q39071|CCA21_ARATH Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=3
Length = 443
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSD---FMAGNNL 114
YL +N DRF+S + + + L L C++IA K + S + F+ N
Sbjct: 235 YLTVNLIDRFMSHNYIEK------QKLQLLGITCMLIASKYEEISAPRLEEFCFITDNTY 288
Query: 115 PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG----IKRRHVNRIIIEA 170
R L+ME+++LN L +R F+ F+ + A I+ ++ E
Sbjct: 289 TR---LEVLSMEIKVLNSLHFRLSVPTTKTFLRRFIRAAQASDKVPLIEMEYLANYFAEL 345
Query: 171 Q-ADLSFASCKPSVIAAAAL 189
+ +F PS+IAA+A+
Sbjct: 346 TLTEYTFLRFLPSLIAASAV 365
>sp|Q39069|CCB13_ARATH Cyclin-B1-3 OS=Arabidopsis thaliana GN=CYCB1-3 PE=2 SV=2
Length = 414
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQ-SFSFSDFMAGNNLPR 116
YL +N DRF+S T+P +L L L+IA K + +D + +
Sbjct: 213 YLTVNIIDRFLSLKTVP------RRELQLVGVSALLIASKYEEIWPPQVNDLVYVTDNSY 266
Query: 117 NYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADL-- 174
N S+ L ME IL LEW V +V F + A G ++ N + A+ L
Sbjct: 267 N-SRQILVMEKTILGNLEW--YLTVPTQYV-FLVRFIKASGSDQKLENLVHFLAELGLMH 322
Query: 175 --SFASCKPSVIAAAAL 189
S C PS++AA+A+
Sbjct: 323 HDSLMFC-PSMLAASAV 338
>sp|Q10Q62|CCF32_ORYSJ Putative cyclin-F3-2 OS=Oryza sativa subsp. japonica GN=CYCF3-2
PE=3 SV=1
Length = 406
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 56 IPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNLP 115
I YLA++Y DRF+S++ + + L L L +A K D+ + F +
Sbjct: 189 ILYLAVSYVDRFLSRNVVN------RERLQLLGTSALFVASKYEDRCHPSARFFSSITAD 242
Query: 116 RNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVN---RIIIEAQA 172
++ + ME IL+ L ++ + + F+ FL S +G R +N ++ A
Sbjct: 243 TYTTQQVVAMEANILSFLNFQMGSPTVITFLRRFL--FSCRG-SNRPINIRLELMCIYLA 299
Query: 173 DLSFAS-----CKPSVIAAAAL 189
+LS PS++AAA L
Sbjct: 300 ELSLLDDYNIRFLPSIVAAACL 321
>sp|Q5E9K7|CCNE2_BOVIN G1/S-specific cyclin-E2 OS=Bos taurus GN=CCNE2 PE=2 SV=1
Length = 404
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 34/154 (22%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRD------QSFSFSDFMAG 111
YLA ++FDRF+ T ++ N+ L L L IA KL + Q F++ A
Sbjct: 164 YLAQDFFDRFML--TQKDINKNM---LQLIGITSLFIASKLEEIYAPKLQEFAYVTDGAC 218
Query: 112 NNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNI--------------SSAKG 157
+ + L MEL IL L+W V ++++ FL + S K
Sbjct: 219 SE------EDILRMELAILKALKWELCPVTVISWLNLFLQVDALKDAPKVLLPQYSQEKF 272
Query: 158 IKRRHVNRIIIEAQADLSFASCKPSVIAAAALVH 191
I+ + + I A L F + ++AAAAL H
Sbjct: 273 IQIAQLLDLCILAIDSLEF---QYRILAAAALCH 303
>sp|Q53MB7|CCD71_ORYSJ Putative cyclin-D7-1 OS=Oryza sativa subsp. japonica GN=CYCD7-1
PE=3 SV=1
Length = 320
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 60 ALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSF-SFSDFMAGNNLPRNY 118
A NY DRF+S + L E + + + CL +A KL + + S D + ++
Sbjct: 109 AANYLDRFLSINC---HLKWEEWMVEVVSVGCLSLACKLDEVTIPSLHDLQMEEAMGHSF 165
Query: 119 SKHAL-NMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFA 177
+ +MEL +L L WR V +F+P ++ + +++ + D SF
Sbjct: 166 RASTIRDMELTLLKALRWRLACVTPFSFLPVTTTTTTTRA--------LLLRSLLDPSFL 217
Query: 178 SCKPSVIAAAALV 190
S++AA+AL
Sbjct: 218 RFDASLLAASALT 230
>sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2
Length = 323
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 58 YLALNYFDRFISKHTLPEVLGNVEDD---LVLAANCCLIIAWKLRD-------QSFSFSD 107
Y+A++YFD F+ K +G +D+ + L + CL +A K+ + Q D
Sbjct: 94 YIAISYFDLFLHKR----FIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYPQDHD 149
Query: 108 FMAGNNLPRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFL------NISSAKGIKRR 161
F+ ++ R EL IL+ L+W+ + ++ +FL N S +K +
Sbjct: 150 FVFKPDVIRK-------TELLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLL 202
Query: 162 HVNRIIIEAQADLSFASCKPSVIAAA 187
+ ++ ++SF + V+AA
Sbjct: 203 RSSDSLLALTKEISFTEYRQFVVAAV 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,173,648
Number of Sequences: 539616
Number of extensions: 7726874
Number of successful extensions: 23771
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 22726
Number of HSP's gapped (non-prelim): 744
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)