Query 037972
Match_columns 480
No_of_seqs 213 out of 1459
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f2c_A Cyclin homolog, V-cycli 100.0 1.5E-41 5.2E-46 329.9 23.1 216 7-237 21-247 (254)
2 2cch_B Cyclin A2, cyclin-A; co 100.0 1.3E-41 4.4E-46 331.5 21.3 231 5-253 6-245 (260)
3 3g33_B CCND3 protein; Ser/Thr 100.0 1.9E-41 6.4E-46 339.4 21.7 221 5-238 37-267 (306)
4 1f5q_B Gamma herpesvirus cycli 100.0 7.6E-42 2.6E-46 334.5 16.4 211 7-237 22-241 (252)
5 1g3n_C V-cyclin; cyclin-depend 100.0 2.9E-41 9.8E-46 328.5 18.4 219 7-238 20-248 (257)
6 2b9r_A Human cyclin B1; cell c 100.0 4.8E-41 1.6E-45 329.6 16.1 230 5-253 6-244 (269)
7 2w96_A G1/S-specific cyclin-D1 100.0 3.3E-40 1.1E-44 323.3 21.3 223 7-239 25-258 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 2.3E-38 7.9E-43 313.2 20.0 210 3-237 15-241 (283)
9 2ivx_A Cyclin-T2; transcriptio 100.0 5.2E-32 1.8E-36 262.4 19.4 195 34-238 29-240 (257)
10 2i53_A Cyclin K; cell cycle, t 100.0 3E-32 1E-36 263.5 16.4 196 34-240 39-253 (258)
11 3rgf_B Cyclin-C; protein kinas 100.0 3.7E-32 1.3E-36 269.1 17.3 192 34-243 41-247 (285)
12 1zp2_A RNA polymerase II holoe 100.0 1.8E-31 6.1E-36 256.1 14.5 192 35-243 27-225 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 5.8E-31 2E-35 269.1 12.3 195 34-238 36-247 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2.7E-28 9.3E-33 245.8 18.5 193 34-239 55-262 (323)
15 1c9b_A General transcription f 99.9 1.4E-23 4.7E-28 197.3 17.1 185 35-237 4-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 8.4E-20 2.9E-24 170.4 18.6 184 35-237 8-194 (200)
17 3k7a_M Transcription initiatio 99.6 3.3E-16 1.1E-20 159.1 6.0 182 36-236 126-320 (345)
18 4bbr_M Transcription initiatio 99.2 2.8E-11 9.6E-16 123.3 6.7 182 37-237 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.7 6.9E-05 2.4E-09 75.1 8.6 106 38-152 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.2 0.024 8.1E-07 52.2 10.3 88 141-237 11-98 (200)
21 1c9b_A General transcription f 95.6 0.055 1.9E-06 50.1 9.8 87 142-237 8-94 (207)
22 4bbr_M Transcription initiatio 92.9 0.38 1.3E-05 48.8 9.5 91 139-238 126-216 (345)
23 1zp2_A RNA polymerase II holoe 92.1 0.61 2.1E-05 44.0 9.4 87 142-237 31-126 (235)
24 3h4c_A Transcription factor TF 91.8 1.5 5E-05 42.3 11.4 152 35-194 11-169 (260)
25 3k7a_M Transcription initiatio 90.2 0.16 5.6E-06 51.2 3.5 88 141-237 128-215 (345)
26 2b9r_A Human cyclin B1; cell c 86.0 3.9 0.00013 39.4 10.2 87 143-237 42-130 (269)
27 3rgf_B Cyclin-C; protein kinas 85.5 3.5 0.00012 40.2 9.6 87 143-237 47-149 (285)
28 1jkw_A Cyclin H; cell cycle, c 84.3 5.3 0.00018 39.7 10.5 84 145-237 63-155 (323)
29 2cch_B Cyclin A2, cyclin-A; co 83.7 3.7 0.00013 39.2 8.8 86 144-237 44-131 (260)
30 2f2c_A Cyclin homolog, V-cycli 83.3 6.7 0.00023 37.3 10.3 87 143-237 56-144 (254)
31 2w96_A G1/S-specific cyclin-D1 83.2 6.8 0.00023 37.6 10.4 86 144-237 62-149 (271)
32 1g3n_C V-cyclin; cyclin-depend 81.9 5.5 0.00019 37.9 9.1 86 144-237 56-143 (257)
33 3g33_B CCND3 protein; Ser/Thr 79.9 7.8 0.00027 38.2 9.7 86 144-237 76-163 (306)
34 2ivx_A Cyclin-T2; transcriptio 77.5 4.6 0.00016 38.3 7.0 56 142-197 34-89 (257)
35 1w98_B Cyclin E, G1/S-specific 76.8 12 0.0004 36.4 9.8 86 144-237 55-143 (283)
36 2i53_A Cyclin K; cell cycle, t 75.7 5.6 0.00019 37.6 7.0 86 143-237 45-143 (258)
37 2pk2_A Cyclin-T1, protein TAT; 72.9 5.1 0.00017 40.6 6.3 56 142-197 41-96 (358)
38 1f5q_B Gamma herpesvirus cycli 55.5 56 0.0019 31.3 9.6 87 143-237 53-141 (252)
39 2pmi_B PHO85 cyclin PHO80, ami 54.7 56 0.0019 32.6 9.6 88 141-236 76-166 (293)
40 1unl_D Cyclin-dependent kinase 42.5 18 0.00063 33.9 3.6 73 37-114 73-155 (208)
41 3o0g_D Cyclin-dependent kinase 37.0 21 0.00073 32.1 3.0 75 35-114 26-110 (149)
42 3m03_A ORC6, origin recognitio 24.4 2E+02 0.0068 24.1 6.7 58 43-108 6-69 (95)
No 1
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.5e-41 Score=329.93 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccc
Q 037972 7 APDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDD 83 (480)
Q Consensus 7 aE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~ 83 (480)
.+.+. |+++|.++.|+.+|+. .|.++. ||.++||||++|+.+|+++++|+++||+||||||++..+.. .+
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~------~~ 93 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK------KT 93 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT------TT
T ss_pred HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH------HH
Confidence 45667 9999999999999986 777664 99999999999999999999999999999999999988873 55
Q ss_pred cchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchH-
Q 037972 84 LVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIK- 159 (480)
Q Consensus 84 LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l- 159 (480)
+||+|+|||+||+|+||..+| +.+| ++.++ .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.+...
T Consensus 94 lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~---~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~ 170 (254)
T 2f2c_A 94 LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCD---CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLW 170 (254)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGH
T ss_pred ccHHHHHHHHHHHHhcccCCCCHHHHHHHhCC---CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhH
Confidence 999999999999999999866 5788 34443 3566 999999999999999999999999999999998876532
Q ss_pred ---HHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCccc-chhhhhhccCCCHHHHHHHHHHHHHH
Q 037972 160 ---RRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKR-CRESLIDSTYVDEDSLDSFCTMLDHM 235 (480)
Q Consensus 160 ---~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~-~~~~L~~~tg~d~edL~~C~~lL~el 235 (480)
...|.++++.++.++.|+.|+||+||||||++|+..+. + .+..+. +...|..++||++++|.+|++.|.++
T Consensus 171 ~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~----~-~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 171 PQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDN----T-NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTC----C-SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcC----C-CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998653 1 122111 16788899999999999999999998
Q ss_pred Hh
Q 037972 236 CC 237 (480)
Q Consensus 236 ~~ 237 (480)
+.
T Consensus 246 ~~ 247 (254)
T 2f2c_A 246 FS 247 (254)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 2
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.3e-41 Score=331.46 Aligned_cols=231 Identities=21% Similarity=0.224 Sum_probs=200.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCccccCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCccc
Q 037972 5 NVAPDFVKYFDVEEKSMPAAGYAYINEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVED 82 (480)
Q Consensus 5 ~vaE~L~nLl~kEe~~~P~~~yl~lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~ 82 (480)
|+.+.+..|++.|.++.|+.+|+..|.++. ||.++||||++|+.+|+++++|+++||+|||||++...+. +.
T Consensus 6 Y~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~------~~ 79 (260)
T 2cch_B 6 YHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVL------RG 79 (260)
T ss_dssp THHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCC------HH
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCC------HH
Confidence 445556778899999999999998777764 9999999999999999999999999999999999999887 35
Q ss_pred ccchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccc-h
Q 037972 83 DLVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG-I 158 (480)
Q Consensus 83 ~LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~-~ 158 (480)
++||+|+|||+||+|+||..+| +.+| .+.++ .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.++ .
T Consensus 80 ~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~---~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 156 (260)
T 2cch_B 80 KLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD---TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK 156 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS---SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHH
T ss_pred HHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC---CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHH
Confidence 5999999999999999999765 5888 35544 3556 9999999999999999999999999999999998766 6
Q ss_pred HHHHHHHHHHHHhcccc-ccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHh
Q 037972 159 KRRHVNRIIIEAQADLS-FASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 159 l~~~A~~lL~lsLlD~~-fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~ 237 (480)
+...|.++++.++.++. |+.|+||+||+|||++|...++. + .|...+..++|+++++|.+|++.|.+++.
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~------~---~w~~~l~~~~g~~~~~i~~~~~~l~~~~~ 227 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG------Q---SWPESLIRKTGYTLESLKPCLMDLHQTYL 227 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS------C---CSCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC------C---cchHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 67789999999999999 99999999999999999998882 1 24567888999999999999999999986
Q ss_pred cc--cccccccccccCCC
Q 037972 238 RK--KMFQEINEEFLSDV 253 (480)
Q Consensus 238 ~k--k~~~si~~k~~Sp~ 253 (480)
.. .+...+.+||.++.
T Consensus 228 ~~~~~~~~~i~~Ky~~~~ 245 (260)
T 2cch_B 228 KAPQHAQQSIREKYKNSK 245 (260)
T ss_dssp HGGGSSCCHHHHHHTSGG
T ss_pred hcCCcchHHHHHHHCccc
Confidence 33 34567788887665
No 3
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=339.44 Aligned_cols=221 Identities=21% Similarity=0.291 Sum_probs=191.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcc
Q 037972 5 NVAPDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVE 81 (480)
Q Consensus 5 ~vaE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK 81 (480)
+-.+.+++|+++|+++.|+.+|+. +|.++. ||.++|+||++|+.+|+++++|+++||+||||||++..+. +
T Consensus 37 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~------~ 110 (306)
T 3g33_B 37 GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR------K 110 (306)
T ss_dssp CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC------G
T ss_pred chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc------H
Confidence 335788999999999999999998 788764 9999999999999999999999999999999999999886 4
Q ss_pred cccchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccch
Q 037972 82 DDLVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGI 158 (480)
Q Consensus 82 ~~LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~ 158 (480)
.++||+|+|||+||+|+||..+| +.+| ++.++ .|+. +|++||+.||++|+|+|+.|||++||.+|+..++....
T Consensus 111 ~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~---~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~ 187 (306)
T 3g33_B 111 AQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDH---AVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRD 187 (306)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTT---SSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhcc---CccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChh
Confidence 56999999999999999999865 5777 34443 4566 99999999999999999999999999999998876532
Q ss_pred ----HHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHH
Q 037972 159 ----KRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDH 234 (480)
Q Consensus 159 ----l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~e 234 (480)
+.++|.++++.++.++.|+.|+||+||||||++|+..++. ...+.-.|...|..++||++++|.+|++.|.+
T Consensus 188 ~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~----~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~ 263 (306)
T 3g33_B 188 RQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGA----CSMSGDELTELLAGITGTEVDCLRACQEQIEA 263 (306)
T ss_dssp THHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcC----CCCchhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998872 10111234678889999999999999999999
Q ss_pred HHhc
Q 037972 235 MCCR 238 (480)
Q Consensus 235 l~~~ 238 (480)
++..
T Consensus 264 l~~~ 267 (306)
T 3g33_B 264 ALRE 267 (306)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9974
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.6e-42 Score=334.51 Aligned_cols=211 Identities=15% Similarity=0.173 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCcc--ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCccccc
Q 037972 7 APDFVKYFDVEEKSMPAAGYAYINEAN--FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDL 84 (480)
Q Consensus 7 aE~L~nLl~kEe~~~P~~~yl~lQ~~~--~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~L 84 (480)
.+.+++|+++|.++.| ..+|.++ .||.++||||++|+.+|+++++|+++||+||||||++..+. ++++
T Consensus 22 d~i~~~l~~~E~~~~p----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~------~~~l 91 (252)
T 1f5q_B 22 QMIYRSEREHDARMVG----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRID------RENY 91 (252)
T ss_dssp HHHHHHHHHHHHHHSS----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCC------GGGH
T ss_pred HHHHHHHHHHHHHhCc----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcC------HHHH
Confidence 3678899999999998 2245554 49999999999999999999999999999999999999887 4569
Q ss_pred chhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccch---
Q 037972 85 VLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGI--- 158 (480)
Q Consensus 85 QLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~--- 158 (480)
||+|+|||+||+|+||..+| +.+| ++.++ .|+. +|++||+.||++|+|+|+.|||++||.+|++.++....
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~---~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~ 168 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLAYLCGG---ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYL 168 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHHCT---TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHhCC---CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHH
Confidence 99999999999999999865 4777 34443 4666 99999999999999999999999999999999876532
Q ss_pred -HHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHh
Q 037972 159 -KRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 159 -l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~ 237 (480)
+..+|.++++.+++|+.|+.|+||+|||||+++++ +. ..+....+...|..++||++++|.+|++.|.+++.
T Consensus 169 ~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l---~~----~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 169 NIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM---NQ----KYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH---TT----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh---cc----CCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999965554 31 10111112557888999999999999999999884
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.9e-41 Score=328.49 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccc
Q 037972 7 APDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDD 83 (480)
Q Consensus 7 aE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~ 83 (480)
.+.+ +|+++|.++.|+.+|+. .|.++. ||.++||||++|+.+|+++++|+++||+||||||+...+. +.+
T Consensus 20 ~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~------~~~ 92 (257)
T 1g3n_C 20 RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS------KEH 92 (257)
T ss_dssp HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC------HHH
T ss_pred HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCC------HHH
Confidence 3455 99999999999999985 777664 9999999999999999999999999999999999998887 456
Q ss_pred cchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccch--
Q 037972 84 LVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGI-- 158 (480)
Q Consensus 84 LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~-- 158 (480)
+||+|+|||+||+|+||..+| +.+| ++.++ .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.+..
T Consensus 93 lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~---~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~ 169 (257)
T 1g3n_C 93 FQKTGSACLLVASKLRSLTPISTSSLCYAAAD---SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHL 169 (257)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT---CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTH
T ss_pred HHHHHHHHHHHHHHHccccCCCHHHHHHHHCC---CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHH
Confidence 999999999999999999865 5888 45544 3556 99999999999999999999999999999999887643
Q ss_pred --HHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHH
Q 037972 159 --KRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMC 236 (480)
Q Consensus 159 --l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~ 236 (480)
+...|.++++.++.++.|+.|+||+||+|||++|+..++.+. ...+ -.|...|..++||++++|.+|++.|.+++
T Consensus 170 ~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~-~~~~--~~w~~~l~~~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 170 DFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQ-DTHS--GGVVPQLASILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp HHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC--------CHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCc-ccch--hhHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 245689999999999999999999999999999998777210 0001 13477888999999999999999999998
Q ss_pred hc
Q 037972 237 CR 238 (480)
Q Consensus 237 ~~ 238 (480)
..
T Consensus 247 ~~ 248 (257)
T 1g3n_C 247 SD 248 (257)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=4.8e-41 Score=329.62 Aligned_cols=230 Identities=18% Similarity=0.216 Sum_probs=199.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCccccCCcc--ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCccc
Q 037972 5 NVAPDFVKYFDVEEKSMPAAGYAYINEAN--FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVED 82 (480)
Q Consensus 5 ~vaE~L~nLl~kEe~~~P~~~yl~lQ~~~--~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~ 82 (480)
|+.+.+..|+++|.++.|+++|+..| ++ .||.++|+||.+|+.+|+++++|+++||+|||||++...+. +.
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~------~~ 78 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVP------KK 78 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCC------GG
T ss_pred HHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCc------HH
Confidence 34456777999999999999999755 55 39999999999999999999999999999999999999887 45
Q ss_pred ccchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchH
Q 037972 83 DLVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIK 159 (480)
Q Consensus 83 ~LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l 159 (480)
++||+|+|||+||+|+||..+| +.+| .+.++ .|+. +|.+||+.||++|+|+++.|||++||..|+..++.+..+
T Consensus 79 ~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~---~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~ 155 (269)
T 2b9r_A 79 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN---TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQ 155 (269)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS---SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHH
T ss_pred HhhHHHHHHHHHHHhcccccCccHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHH
Confidence 6999999999999999999866 5888 34443 3556 999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHhcc
Q 037972 160 RRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRK 239 (480)
Q Consensus 160 ~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~~k 239 (480)
...|.++++.++.++.|+.|+||+||+|||++|+..++. . .|...+..++||++++|.+|++.|.+++...
T Consensus 156 ~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~-------~--~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~ 226 (269)
T 2b9r_A 156 HTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN-------G--EWTPTLQHYLSYTEESLLPVMQHLAKNVVMV 226 (269)
T ss_dssp HHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC-------C--CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC-------C--CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999999999999999998882 1 3466888999999999999999999987522
Q ss_pred ----cccccccccccCCC
Q 037972 240 ----KMFQEINEEFLSDV 253 (480)
Q Consensus 240 ----k~~~si~~k~~Sp~ 253 (480)
.+...+.+||.++.
T Consensus 227 ~~~~~~~~ai~~Ky~~~~ 244 (269)
T 2b9r_A 227 NQGLTKHMTVKNKYATSK 244 (269)
T ss_dssp TTSCCSCCHHHHHTTSGG
T ss_pred cCCCcchHHHHHHhcchh
Confidence 35667888887665
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=3.3e-40 Score=323.31 Aligned_cols=223 Identities=21% Similarity=0.310 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhhcCCCCCccc-cCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccc
Q 037972 7 APDFVKYFDVEEKSMPAAGYAY-INEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDD 83 (480)
Q Consensus 7 aE~L~nLl~kEe~~~P~~~yl~-lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~ 83 (480)
.+.+++|+++|.++.|+.+|+. .|.++. ||.++|+||++|+.+++++.+|+++||+|||||+++..+. +.+
T Consensus 25 ~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~------~~~ 98 (271)
T 2w96_A 25 DRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVK------KSR 98 (271)
T ss_dssp CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCC------TTT
T ss_pred HHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcC------HHH
Confidence 3678999999999999999986 787764 9999999999999999999999999999999999999887 356
Q ss_pred cchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchH-
Q 037972 84 LVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIK- 159 (480)
Q Consensus 84 LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l- 159 (480)
+||+|+|||+||+|+||..+| +.+| .+.++ .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.....
T Consensus 99 lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~---~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~ 175 (271)
T 2w96_A 99 LQLLGATCMFVASKMKETIPLTAEKLCIYTDN---SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENK 175 (271)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT---SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHH
Confidence 999999999999999999654 5777 34443 4566 999999999999999999999999999999998876432
Q ss_pred ---HHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCccc-chhhhhhccCCCHHHHHHHHHHHHHH
Q 037972 160 ---RRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKR-CRESLIDSTYVDEDSLDSFCTMLDHM 235 (480)
Q Consensus 160 ---~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~-~~~~L~~~tg~d~edL~~C~~lL~el 235 (480)
.++|.++++.++.|+.|+.|+||+||||||++|+..++.+. +..+.+.. +...|..++||++++|.+|++.|.++
T Consensus 176 ~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~-~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l 254 (271)
T 2w96_A 176 QIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRS-PNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEAL 254 (271)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHS-TTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCC-CCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999998886211 11121111 25678889999999999999999999
Q ss_pred Hhcc
Q 037972 236 CCRK 239 (480)
Q Consensus 236 ~~~k 239 (480)
+...
T Consensus 255 ~~~~ 258 (271)
T 2w96_A 255 LESS 258 (271)
T ss_dssp HTTT
T ss_pred HHHH
Confidence 9643
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.3e-38 Score=313.19 Aligned_cols=210 Identities=17% Similarity=0.248 Sum_probs=181.9
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCccccCCccc--cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcC-CCCCCccCC
Q 037972 3 FHNVAPDFVKYFDVEEKSMPAAGYAYINEANF--LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISK-HTLPEVLGN 79 (480)
Q Consensus 3 ~~~vaE~L~nLl~kEe~~~P~~~yl~lQ~~~~--mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~-~~i~~dkp~ 79 (480)
+-+..+.+.+|+++|.++.|+.+|+..|.++. ||.++|+||++|+.++++..+|+++||+||||||+. ..+.
T Consensus 15 ~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~----- 89 (283)
T 1w98_B 15 WANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV----- 89 (283)
T ss_dssp SSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC-----
T ss_pred hcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCC-----
Confidence 45677889999999999999999998777664 999999999999999999999999999999999997 4565
Q ss_pred cccccchhhhhHHHHhhhhhccCCC-cccc-cccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhccc
Q 037972 80 VEDDLVLAANCCLIIAWKLRDQSFS-FSDF-MAGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAK 156 (480)
Q Consensus 80 mK~~LQLLAvACLfIAAK~EE~~vP-L~dL-~v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~ 156 (480)
+.++||+|+|||+||+|+||..+| +.+| ++.++ .|+. +|.+||+.||++|+|+++.|||++||.+|+..++.+
T Consensus 90 -~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~---~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~ 165 (283)
T 1w98_B 90 -KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG---ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLN 165 (283)
T ss_dssp -GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT---SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC---CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccC
Confidence 356999999999999999999876 5788 45444 3455 999999999999999999999999999999987654
Q ss_pred ch-----------HHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHH
Q 037972 157 GI-----------KRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSL 225 (480)
Q Consensus 157 ~~-----------l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL 225 (480)
+. ....+.++++.++.|+.|+.|+||+||||||++|.. ...+..++||++++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~----------------~~~l~~~tg~~~~~i 229 (283)
T 1w98_B 166 DLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS----------------SELMQKVSGYQWCDI 229 (283)
T ss_dssp SSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC----------------HHHHHHHSCCCHHHH
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC----------------hHHHHHHhCCCHHHH
Confidence 21 123467789999999999999999999999998742 346778999999999
Q ss_pred HHHHHHHHHHHh
Q 037972 226 DSFCTMLDHMCC 237 (480)
Q Consensus 226 ~~C~~lL~el~~ 237 (480)
.+|++.|..++.
T Consensus 230 ~~c~~~l~~~~~ 241 (283)
T 1w98_B 230 ENCVKWMVPFAM 241 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=5.2e-32 Score=262.38 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=159.7
Q ss_pred ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc----
Q 037972 34 FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM---- 109 (480)
Q Consensus 34 ~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~---- 109 (480)
.+|..+++||.+|+.+|+++.+|+++||+|||||++...+.. .++|+||+||||||+|+||..+++.++.
T Consensus 29 ~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~------~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTK------FNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhh------hCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 599999999999999999999999999999999999998873 4599999999999999999955566761
Q ss_pred -----------ccCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhc-cccc
Q 037972 110 -----------AGNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQA-DLSF 176 (480)
Q Consensus 110 -----------v~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLl-D~~f 176 (480)
+.++. |.+.. +|.+||+.||++|+|+++.+||+.||..|+..++.+..+.+.|+++++.++. +..+
T Consensus 103 ~~~~~~~~~~~~~~~~-y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~ 181 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDA-YLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC 181 (257)
T ss_dssp HHHCTTSCCCCTTSHH-HHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHhccCCCCCCcchHH-HHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHH
Confidence 11221 32225 9999999999999999999999999999999998887788889999988885 5568
Q ss_pred cCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHhc
Q 037972 177 ASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCR 238 (480)
Q Consensus 177 l~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~~ 238 (480)
+.|+||+||+|||++|...++.+. +..+..-+|...+ ..+|++++|.+|++.|.+++.+
T Consensus 182 l~~~Ps~IAaAai~lA~~~~~~~~-p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 182 LQYKPTVIACVCIHLACKWSNWEI-PVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCC-CCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCC-CCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887311 1101111222222 3479999999999999999963
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.98 E-value=3e-32 Score=263.50 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc----
Q 037972 34 FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM---- 109 (480)
Q Consensus 34 ~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~---- 109 (480)
.+|..+++||.+|+.+|+++.+|+++||+|||||+++..+.. .++|++|+|||+||+|+||..+++.++.
T Consensus 39 ~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~------~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 39 RYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQ------FPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhh------cCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 499999999999999999999999999999999999998874 4599999999999999999766667772
Q ss_pred --ccCCCCCC----cHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccc----hHHHHHHHHHHHHhccccccC
Q 037972 110 --AGNNLPRN----YSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKG----IKRRHVNRIIIEAQADLSFAS 178 (480)
Q Consensus 110 --v~~sK~Y~----f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~----~l~~~A~~lL~lsLlD~~fl~ 178 (480)
+.++. |. ... +|.+||+.||++|+|+++.+||++||..|+..++.+. .+.+.|+++++.++.++.++.
T Consensus 113 ~~~~~~~-~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 113 SLLNDVQ-FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHSCHHH-HGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHhchhh-hhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 11111 21 124 9999999999999999999999999999999988765 466789999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCCCcc--cchhhhhh--ccCCCHHHHHHHHHHHHHHHhccc
Q 037972 179 CKPSVIAAAALVHVCKLLLRDENGERPDAK--RCRESLID--STYVDEDSLDSFCTMLDHMCCRKK 240 (480)
Q Consensus 179 Y~PSvIAAAALllAl~~L~~~e~~~~p~~~--~~~~~L~~--~tg~d~edL~~C~~lL~el~~~kk 240 (480)
|+||+||+|||++|...++.+. +... .....+.. +.|+++++|.+|++.|.++|...+
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~~----~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~ 253 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFEI----QEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCG----GGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSC
T ss_pred cChHHHHHHHHHHHHHHhCCCC----CccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999887211 1000 00011222 359999999999999999997543
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.98 E-value=3.7e-32 Score=269.09 Aligned_cols=192 Identities=19% Similarity=0.159 Sum_probs=166.8
Q ss_pred ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCC-ccccc-c-
Q 037972 34 FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFS-FSDFM-A- 110 (480)
Q Consensus 34 ~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vP-L~dL~-v- 110 (480)
.+|..+++||.+|+.+|+|..+|+++|++|||||++...+.. .++|+||+|||+||+|+||...| +.++. +
T Consensus 41 ~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~------~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 41 KLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKS------IDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTT------SCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchh------cCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 499999999999999999999999999999999999998874 45999999999999999999876 45652 1
Q ss_pred -----------cCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccC
Q 037972 111 -----------GNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFAS 178 (480)
Q Consensus 111 -----------~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~ 178 (480)
.... |.+.. +|.+||+.||++|+|+++.+||++||..|+..++.+..+.+.|+++++.++.+..++.
T Consensus 115 ~~~~k~~~~~~~~~~-~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~ 193 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKE-FPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLL 193 (285)
T ss_dssp HHHHHHHCTTTCCSC-CCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHHHcccccccCchh-hHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhc
Confidence 1222 55666 9999999999999999999999999999999999887788899999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHhcccccc
Q 037972 179 CKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQ 243 (480)
Q Consensus 179 Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~~kk~~~ 243 (480)
|+||+||+|||++|...++. . ...+...++++.++|.+|++.|.+++...+.+.
T Consensus 194 ~~Ps~IAaAaiylA~~~~~~-------~----~~~W~~~~~~~~~~l~~~~~~il~ly~~~~~~~ 247 (285)
T 3rgf_B 194 YPPFMIALACLHVACVVQQK-------D----ARQWFAELSVDMEKILEIIRVILKLYEQWKNFD 247 (285)
T ss_dssp SCHHHHHHHHHHHHHHHTTC-------C----CHHHHHTSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHHcCC-------C----hhhHHHHHCCCHHHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999987772 1 123445679999999999999999997554443
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-31 Score=256.12 Aligned_cols=192 Identities=11% Similarity=0.018 Sum_probs=162.6
Q ss_pred cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCcccc-cccC-
Q 037972 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDF-MAGN- 112 (480)
Q Consensus 35 mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL-~v~~- 112 (480)
.|..+++||.+|+..++++.+|+++|++|||||++...+... .++|+||+|||+||+|+||..+++.++ .+.+
T Consensus 27 ~R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~-----~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 27 DTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKG-----FSLEALVATCIYLSCKVEECPVHIRTICNEAND 101 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCC-----CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccc-----cCHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 499999999999999999999999999999999999888740 459999999999999999987777777 2221
Q ss_pred ---CCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHH
Q 037972 113 ---NLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAA 188 (480)
Q Consensus 113 ---sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAA 188 (480)
.. |.++. +|.+||+.||++|+|++..+||+.||..|++.++.+..+.+.|.++++.++.+..++.|+||.||+||
T Consensus 102 ~~~~~-~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAa 180 (235)
T 1zp2_A 102 LWSLK-VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 (235)
T ss_dssp TCCCS-SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred Hccch-hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHH
Confidence 11 34555 99999999999999999999999999999999887777888899999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCccc-chhhhhhccCCCHHHHHHHHHHHHHHHhcccccc
Q 037972 189 LVHVCKLLLRDENGERPDAKR-CRESLIDSTYVDEDSLDSFCTMLDHMCCRKKMFQ 243 (480)
Q Consensus 189 LllAl~~L~~~e~~~~p~~~~-~~~~L~~~tg~d~edL~~C~~lL~el~~~kk~~~ 243 (480)
|++|...++. ..+ +.. .+.|+++++|.+|++.|.+++...+.+.
T Consensus 181 i~lA~~~~~~--------~~~~~~~---~~~~~~~~~i~~~~~~i~~ly~~~~~~~ 225 (235)
T 1zp2_A 181 LLISCCNDEN--------TIPKLLD---LIKSTDAFKVILCVQRIISIYYFEDIEA 225 (235)
T ss_dssp HHHHHTSCTT--------HHHHHHH---HCCHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHhcCC--------CCCCCcc---hhhcCCHHHHHHHHHHHHHHHhhCCcCc
Confidence 9999975541 111 111 1239999999999999999998665443
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=5.8e-31 Score=269.15 Aligned_cols=195 Identities=14% Similarity=0.091 Sum_probs=159.1
Q ss_pred ccHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc-c--
Q 037972 34 FLRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM-A-- 110 (480)
Q Consensus 34 ~mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~-v-- 110 (480)
.+|..+|+||.+|+.+|+|+.+|+++||+|||||++...+.. .++|+||+||||||+|+||..+++.+|. +
T Consensus 36 ~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~------~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 36 SYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR------FPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc------ccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 499999999999999999999999999999999999998873 5599999999999999999965666662 1
Q ss_pred ------------cCCCCCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhc-cccc
Q 037972 111 ------------GNNLPRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQA-DLSF 176 (480)
Q Consensus 111 ------------~~sK~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLl-D~~f 176 (480)
.+.. |.+.. +|.+||+.||++|+|+|+.+||+.||..|+..++.+..+.+.|+++++.++. +..+
T Consensus 110 ~~~~~~~~~~~~~~~~-y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~ 188 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEA-YLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS 188 (358)
T ss_dssp HHHCSSSCCCCTTSHH-HHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhccccccccccchh-hhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch
Confidence 1111 32225 9999999999999999999999999999999998877788889999999985 4458
Q ss_pred cCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHhc
Q 037972 177 ASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCCR 238 (480)
Q Consensus 177 l~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~~ 238 (480)
+.|+||+||+|||++|...++.+. +..+...+|...+ ..+|++++|.+|++.|.+++..
T Consensus 189 l~y~Ps~IAaAAI~lA~~~l~~~~-p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 189 LQYTPPVVACVCIHLACKWSNWEI-PVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEK 247 (358)
T ss_dssp GTSCHHHHTTTTTTTHHHHTTCCC-CCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTT
T ss_pred hccCHHHHHHHHHHHHHHHhCCCC-CCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999877211 1101111221222 2478999999999999999854
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=2.7e-28 Score=245.84 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=160.2
Q ss_pred ccHHHHHHHHHHHhhhCC--CCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc--
Q 037972 34 FLRPRAIKVILQNSKSNK--RNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM-- 109 (480)
Q Consensus 34 ~mR~~LVDWMieV~~~lk--Ls~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~-- 109 (480)
.+|...++||.+||..|+ |+.+|+++|++|||||++...+.. .++|+||+||||||+|+||..+++.+|.
T Consensus 55 ~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~------~~~~lva~acLfLA~K~EE~~~~l~d~v~~ 128 (323)
T 1jkw_A 55 TLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVME------YHPRIIMLTCAFLACKVDEFNVSSPQFVGN 128 (323)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhh------cCHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Confidence 499999999999999999 999999999999999999998873 4599999999999999999987777772
Q ss_pred ccCCC-CCCcHH-HHHHHHHHHHHhcCCccccCChhhHHHHHHHHhc-----cc--chHHHHHHHHHHHHhccccccCcc
Q 037972 110 AGNNL-PRNYSK-HALNMELQILNGLEWRSRAVVAVNFVPFFLNISS-----AK--GIKRRHVNRIIIEAQADLSFASCK 180 (480)
Q Consensus 110 v~~sK-~Y~f~~-dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~-----~~--~~l~~~A~~lL~lsLlD~~fl~Y~ 180 (480)
+.+.. .+.|.. +|.+||+.||++|+|+|+.+||+.||..|+..+. .. ..+.+.|+++++.++.+..++.|+
T Consensus 129 ~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~ 208 (323)
T 1jkw_A 129 LRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYT 208 (323)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSC
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCC
Confidence 21110 001345 9999999999999999999999999999987652 22 345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhc--cCCCHHHHHHHHHHHHHHHhcc
Q 037972 181 PSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDS--TYVDEDSLDSFCTMLDHMCCRK 239 (480)
Q Consensus 181 PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~--tg~d~edL~~C~~lL~el~~~k 239 (480)
||+||+|||++|...++.+ .+ .|...+..+ .+++.++|.+|+..|..++...
T Consensus 209 Ps~IAaAai~lA~~~~~~~----~~---~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 209 PSQIALTAILSSASRAGIT----ME---SYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp HHHHHHHHHHHHHHHHSCC----CT---THHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCC----hH---HHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 9999999999999987721 12 234445443 7889999999999999999653
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=1.4e-23 Score=197.26 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCcccccccCCC
Q 037972 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFMAGNNL 114 (480)
Q Consensus 35 mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~v~~sK 114 (480)
......++|.+++..++++..|+.+|++||+||+....+.. .+.+++|+|||+||+|+||....+.++. ...
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~------~~~~~v~aaclylAcK~ee~p~~l~di~-~~~- 75 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKG------RANDAIASACLYIACRQEGVPRTFKEIC-AVS- 75 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTT------SCHHHHHHHHHHHHHHHTTCCCCHHHHH-HTS-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCC------CCHHHHHHHHHHHHHHhcCCCCCHHHHH-HHH-
Confidence 35678899999999999999999999999999999988864 3489999999999999999966677872 222
Q ss_pred CCCcHHHHHHHHHHHHHhcCCccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHH
Q 037972 115 PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCK 194 (480)
Q Consensus 115 ~Y~f~~dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~ 194 (480)
.+...+|.+||+.||+.|+|++..++|+.||..|...++.++.+.+.|++++..++.+..+++|+|+.||+|||++|..
T Consensus 76 -~~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~ 154 (207)
T 1c9b_A 76 -RISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 154 (207)
T ss_dssp -SSCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHH
Confidence 1223499999999999999999999999999999999999888888899999999988889999999999999999998
Q ss_pred HhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHh
Q 037972 195 LLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 195 ~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~ 237 (480)
..+. +. +...+..++|+++.+|..|++.|.+...
T Consensus 155 ~~~~------~~---~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 155 ASAE------KR---TQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp TSSS------CC---CHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHCC------CC---CHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 6651 11 2568889999999999999999987654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.84 E-value=8.4e-20 Score=170.38 Aligned_cols=184 Identities=15% Similarity=0.057 Sum_probs=161.4
Q ss_pred cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc-ccCC
Q 037972 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM-AGNN 113 (480)
Q Consensus 35 mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~-v~~s 113 (480)
......++|.+++..++++..+...|+.|++||+....+... ..+.++++||+||+|.++....+.|+. +.+
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr------~~~~vaaAclylAcr~~~~p~~l~di~~~~~- 80 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR------SIESVMAACVYAACRLLKVPRTLDEIADIAR- 80 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC------CHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC------CHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC-
Confidence 456889999999999999999999999999999998777633 389999999999999999766677772 222
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCcccc--CChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHH
Q 037972 114 LPRNYSKHALNMELQILNGLEWRSRA--VVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVH 191 (480)
Q Consensus 114 K~Y~f~~dIlrMEl~IL~tL~W~L~~--pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALll 191 (480)
+...+|.++++.|++.|++++.. ++|..||..|...+++++.+.+.|++++..+..+..+.++.|+.||+|||++
T Consensus 81 ---v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~ 157 (200)
T 1ais_B 81 ---VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYI 157 (200)
T ss_dssp ---SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHH
Confidence 22349999999999999999999 9999999999999999888888999999999999899999999999999999
Q ss_pred HHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHh
Q 037972 192 VCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 192 Al~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~ 237 (480)
|....+. +. +...+..+.|+++..|..|++.|.+.+.
T Consensus 158 A~~~~~~------~~---t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 158 ASLLEGE------KR---TQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHTTC------CC---CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC------CC---CHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 9987661 21 3678999999999999999999998764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.3e-16 Score=159.14 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc-ccCCC
Q 037972 36 RPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM-AGNNL 114 (480)
Q Consensus 36 R~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~-v~~sK 114 (480)
-..+...|..++..++|+..+.-.|..||.|++....+... ..+.|++|||+||+|.++....+.++. +.+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr------~~~~vaaAclyiAcR~e~~prtl~ei~~~~~-- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK------SMESIMAASILIGCRRAEVARTFKEIQSLIH-- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC------CSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC------cHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--
Confidence 35678999999999999999999999999999998877643 389999999999999999866677772 222
Q ss_pred CCCcHHHHHHHHHHHHHhcC------------CccccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHH
Q 037972 115 PRNYSKHALNMELQILNGLE------------WRSRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPS 182 (480)
Q Consensus 115 ~Y~f~~dIlrMEl~IL~tL~------------W~L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PS 182 (480)
+...+|.++++.|++.|+ +++..++|..||..|...+++...+.+.|++++..+..+..+..++|+
T Consensus 198 --v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~ 275 (345)
T 3k7a_M 198 --VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp --CCSHHHHHHHHHHHHHHTCC----------------------------------------------------------
T ss_pred --CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHH
Confidence 223489999999999999 999999999999999999999888888899999999998889999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHH
Q 037972 183 VIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMC 236 (480)
Q Consensus 183 vIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~ 236 (480)
.||||||++|...++. + .+...+..+.|+++..|..+++.|.+..
T Consensus 276 ~IAaAaIylAa~~~~~------~---~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 276 TIAVVSIYLNILLFQI------P---ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCC------C---CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999987662 1 1255788899999999999999998866
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.15 E-value=2.8e-11 Score=123.33 Aligned_cols=182 Identities=12% Similarity=0.031 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCccccc-ccCCCC
Q 037972 37 PRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDFM-AGNNLP 115 (480)
Q Consensus 37 ~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL~-v~~sK~ 115 (480)
..+...|.+++..++|+..+.-.|..++.+++....+...+ ...++++||+||+|.++....+.++. +.+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs------~e~vaAAclYiACR~~~~prtl~eI~~~~~--- 197 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS------MESIMAASILIGCRRAEVARTFKEIQSLIH--- 197 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC------HHHHHHHHHHHHHHHTCCBCCHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC------HHHHHHHHHHHHHHhcCCCccHHHHHHHhC---
Confidence 45677899999999999999999999999999887665332 78999999999999999877777772 222
Q ss_pred CCcHHHHHHHHHHHHHhcCCc------------cccCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHH
Q 037972 116 RNYSKHALNMELQILNGLEWR------------SRAVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSV 183 (480)
Q Consensus 116 Y~f~~dIlrMEl~IL~tL~W~------------L~~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSv 183 (480)
+-..+|.++.+.|++.|+.. +...+|.+|+..|...|++...+.+.|..++..+..+.......|+.
T Consensus 198 -v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 198 -VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp -CCTTHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred -CCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHH
Confidence 11237999999999999974 67789999999999999998888888989998888877778999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCCHHHHHHHHHHHHHHHh
Q 037972 184 IAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 184 IAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d~edL~~C~~lL~el~~ 237 (480)
||||||++|....+. +. ....+..+.++.+..|...|+.|.+...
T Consensus 277 IAAAaIylAa~l~g~------~~---t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 277 IAVVSIYLNILLFQI------PI---TAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCC------CC---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999986662 11 1557888999999999999998887653
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.73 E-value=6.9e-05 Score=75.12 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCC-CCCccCCcccccchhhhhHHHHhhhhhccCCCc-ccc-cccCCC
Q 037972 38 RAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHT-LPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSF-SDF-MAGNNL 114 (480)
Q Consensus 38 ~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~-i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL-~dL-~v~~sK 114 (480)
.+-+|+..+...-+++.+|+.+|+.|+||+..... +.. .+ ...+-+-++||.||+|+-+....- ..+ .++ +
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~---~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg-G- 149 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NS---LTAHRFLLTATTVATKGLCDSFSTNAHYAKVG-G- 149 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-ST---TTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH-T-
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CC---chHHHHHHHHHHHHHHhccccccChhHhhhcc-C-
Confidence 46678999999999999999999999999987432 221 11 337788899999999998876433 333 232 2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCccccCChhhHHHHHHHH
Q 037972 115 PRNYSKHALNMELQILNGLEWRSRAVVAVNFVPFFLNI 152 (480)
Q Consensus 115 ~Y~f~~dIlrMEl~IL~tL~W~L~~pTP~~FL~~fL~~ 152 (480)
+...++.+||+..|..|+|+|... .-.|..+++..
T Consensus 150 --isl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 150 --VRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp --SCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred --cCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 334599999999999999999655 55666555544
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.24 E-value=0.024 Score=52.22 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCC
Q 037972 141 VAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYV 220 (480)
Q Consensus 141 TP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~ 220 (480)
..++++..+...+++.+.+...|..+...++....+-+..+..+|+|||++|.+..+. |.. ...+..++++
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~------p~~---l~di~~~~~v 81 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKV------PRT---LDEIADIARV 81 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTC------CCC---HHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCC------CCC---HHHHHHHHCC
Confidence 4567888899999998888888999998888777777899999999999999986651 322 5678888999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
++.+|..|++.|.+...
T Consensus 82 ~~~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLN 98 (200)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999988764
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.62 E-value=0.055 Score=50.13 Aligned_cols=87 Identities=10% Similarity=0.078 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCC
Q 037972 142 AVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVD 221 (480)
Q Consensus 142 P~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d 221 (480)
...+|..+...+++.+.+...|..+....+....+-++.+..||+|||++|++.-+. |. ....+..+++++
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~------p~---~l~di~~~~~~~ 78 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV------PR---TFKEICAVSRIS 78 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC------CC---CHHHHHHTSSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC------CC---CHHHHHHHHCCC
Confidence 466888888889988888888989998888877888999999999999999985441 22 256788889999
Q ss_pred HHHHHHHHHHHHHHHh
Q 037972 222 EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ~edL~~C~~lL~el~~ 237 (480)
..+|..|+..|.+...
T Consensus 79 ~~~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 79 KKEIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999999999888775
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=92.86 E-value=0.38 Score=48.80 Aligned_cols=91 Identities=8% Similarity=0.070 Sum_probs=73.0
Q ss_pred cCChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc
Q 037972 139 AVVAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST 218 (480)
Q Consensus 139 ~pTP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t 218 (480)
....+..|..+...+++.+.+...|..+...+.....+-......||||||++|++.-+. |.. ...+..++
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~------prt---l~eI~~~~ 196 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV------ART---FKEIQSLI 196 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC------BCC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC------Ccc---HHHHHHHh
Confidence 456777888888899998888899999998887766666788999999999999986551 222 56788889
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 037972 219 YVDEDSLDSFCTMLDHMCCR 238 (480)
Q Consensus 219 g~d~edL~~C~~lL~el~~~ 238 (480)
++++.+|..|++.|.+.+..
T Consensus 197 ~v~~keigr~~k~l~~~L~l 216 (345)
T 4bbr_M 197 HVKTKEFGKTLNIMKNILRG 216 (345)
T ss_dssp TCCTTHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999876643
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=92.13 E-value=0.61 Score=43.99 Aligned_cols=87 Identities=7% Similarity=-0.010 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccC-ccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--
Q 037972 142 AVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFAS-CKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST-- 218 (480)
Q Consensus 142 P~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~-Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t-- 218 (480)
..++|......+++...+...|..++...+....+.. +.+-.||+|||++|.+.-+. |.. ...+..++
T Consensus 31 ~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~------~~~---l~d~~~~~~~ 101 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC------PVH---IRTICNEAND 101 (235)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC------CCC---HHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC------ccc---HHHHHHHHHH
Confidence 3567777777888887777788888888888888888 99999999999999984431 222 23343332
Q ss_pred ------CCCHHHHHHHHHHHHHHHh
Q 037972 219 ------YVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 219 ------g~d~edL~~C~~lL~el~~ 237 (480)
.++.++|..|...|.+.+.
T Consensus 102 ~~~~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 102 LWSLKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred HccchhhccHHHHHHHHHHHHHHCC
Confidence 6899999999999988775
No 24
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.83 E-value=1.5 Score=42.32 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccCCCcccc-cccCC
Q 037972 35 LRPRAIKVILQNSKSNKRNAYIPYLALNYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDF-MAGNN 113 (480)
Q Consensus 35 mR~~LVDWMieV~~~lkLs~eTl~LAVnyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL-~v~~s 113 (480)
..-.+.+-|..++.+-+++..++--||-+--.|.-...-.... -.+-|-+|++||.||+-=--..+|+.++ .++.+
T Consensus 11 LHP~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqR---vE~q~dVAAAc~miAae~~~~PiplaE~r~lD~s 87 (260)
T 3h4c_A 11 LHPTMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQR---VERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSS 87 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTT
T ss_pred ecHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccc---ccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhh
Confidence 4455677889999999999999999999998888533221111 1236899999999999655555677777 45554
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCc-----cccCChhhHHHHHHHHhcccchH-HHHHHHHHHHHhccccccCccHHHHHHH
Q 037972 114 LPRNYSKHALNMELQILNGLEWR-----SRAVVAVNFVPFFLNISSAKGIK-RRHVNRIIIEAQADLSFASCKPSVIAAA 187 (480)
Q Consensus 114 K~Y~f~~dIlrMEl~IL~tL~W~-----L~~pTP~~FL~~fL~~L~~~~~l-~~~A~~lL~lsLlD~~fl~Y~PSvIAAA 187 (480)
.-+-++++.| |+..|+-. |...-.-..|.+|+.++++.-.+ .-+|..++...-..-....+.-----.-
T Consensus 88 ---L~Dvelrr~E--iv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~ 162 (260)
T 3h4c_A 88 ---LGDVELRRAD--IVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTT 162 (260)
T ss_dssp ---CCCHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred ---hhHHHHHHHH--HHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2122555554 66777643 22222334566777777775322 3457777766555445555554444445
Q ss_pred HHHHHHH
Q 037972 188 ALVHVCK 194 (480)
Q Consensus 188 ALllAl~ 194 (480)
|+++|+-
T Consensus 163 AlLLArT 169 (260)
T 3h4c_A 163 ALLLART 169 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5667663
No 25
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=90.22 E-value=0.16 Score=51.21 Aligned_cols=88 Identities=8% Similarity=0.077 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCC
Q 037972 141 VAVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYV 220 (480)
Q Consensus 141 TP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~ 220 (480)
..+.+|..+...+++...+...|..+...++....+-......||+|||++|++.-+ .|. ....+..++++
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~------~pr---tl~ei~~~~~v 198 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE------VAR---TFKEIQSLIHV 198 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB------SSC---CHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC------CCc---cHHHHHHHHCC
Confidence 456788888888888888888898888888777667788999999999999987443 122 25678888999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
++.+|..|+..|.+.+.
T Consensus 199 ~~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILR 215 (345)
T ss_dssp CSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998775
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=86.04 E-value=3.9 Score=39.37 Aligned_cols=87 Identities=8% Similarity=-0.088 Sum_probs=65.0
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CC
Q 037972 143 VNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YV 220 (480)
Q Consensus 143 ~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~ 220 (480)
.+||......+++.....-.|..+++..+....+.....-.||+|||++|.+.-+. .| +....+..++ .+
T Consensus 42 v~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~-----~~---p~~~d~~~~~~~~~ 113 (269)
T 2b9r_A 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEM-----YP---PEIGDFAFVTDNTY 113 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCS-----SC---CCHHHHHHHTCSSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccc-----cC---ccHHHHHHHhcCCC
Confidence 34566666666776667777888888888777788889999999999999985441 11 1244566555 48
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
++++|..+-..|.+...
T Consensus 114 ~~~eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 114 TKHQIRQMEMKILRALN 130 (269)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999998875
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.55 E-value=3.5 Score=40.18 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhc-----
Q 037972 143 VNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDS----- 217 (480)
Q Consensus 143 ~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~----- 217 (480)
.+||......+++...+...|..+++..+....+..+.+-.||+|||++|.+.-+ .+. | ....+..+
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE---~~~-~----~~~di~~~~~~~~ 118 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE---FGV-V----SNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTT---SCC-C----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhc---ccc-c----cHHHHHHHHHHHH
Confidence 3456666667777777777888899888888889999999999999999998443 111 1 01122211
Q ss_pred -----------cCCCHHHHHHHHHHHHHHHh
Q 037972 218 -----------TYVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 218 -----------tg~d~edL~~C~~lL~el~~ 237 (480)
..+..++|..|-..|.+.+.
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~ 149 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMD 149 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTT
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcC
Confidence 13678899999999888775
No 28
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=84.33 E-value=5.3 Score=39.72 Aligned_cols=84 Identities=8% Similarity=-0.011 Sum_probs=60.2
Q ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhccCCC-
Q 037972 145 FVPFFLNISS--AKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDSTYVD- 221 (480)
Q Consensus 145 FL~~fL~~L~--~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~tg~d- 221 (480)
+|..+...++ +...+...|..++...+....+..+.|-.||+|||++|.+.-+. |.. ...+...+..+
T Consensus 63 ~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~------~~~---l~d~v~~~~~~p 133 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF------NVS---SPQFVGNLRESP 133 (323)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC------CCC---HHHHGGGSSSCH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC------CCC---HHHHHHHhccCh
Confidence 4555556666 66667777888999888888899999999999999999984441 221 33444444333
Q ss_pred ------HHHHHHHHHHHHHHHh
Q 037972 222 ------EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ------~edL~~C~~lL~el~~ 237 (480)
.++|..|-..|.+.+.
T Consensus 134 ~~~~~~~~~Il~~E~~iL~~L~ 155 (323)
T 1jkw_A 134 LGQEKALEQILEYELLLIQQLN 155 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHCC
Confidence 5778888888887664
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=83.74 E-value=3.7 Score=39.20 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=60.5
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CCC
Q 037972 144 NFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YVD 221 (480)
Q Consensus 144 ~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~d 221 (480)
+||......+++.....-.|..+++..+....+.....-.||+|||++|.+.-+. .| +....+..++ .++
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~-----~~---~~~~d~~~i~~~~~~ 115 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEI-----YP---PEVAEFVYITDDTYT 115 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCS-----SC---CCHHHHHHHTTSSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhccc-----CC---CCHHHHHHHHcCCcC
Confidence 4555555566666666666777777766666666777889999999999985441 11 1244555555 489
Q ss_pred HHHHHHHHHHHHHHHh
Q 037972 222 EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ~edL~~C~~lL~el~~ 237 (480)
.++|..+-..|.+.+.
T Consensus 116 ~~~i~~mE~~iL~~L~ 131 (260)
T 2cch_B 116 KKQVLRMEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999988775
No 30
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=83.31 E-value=6.7 Score=37.27 Aligned_cols=87 Identities=9% Similarity=-0.091 Sum_probs=63.2
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CC
Q 037972 143 VNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YV 220 (480)
Q Consensus 143 ~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~ 220 (480)
.+||......+++.....-.|..+++..+..........-.||+|||++|.+.-+. .|. ....+..++ .+
T Consensus 56 vdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~-----~~p---~~~d~~~~~~~~~ 127 (254)
T 2f2c_A 56 LTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTV-----KPM---TVSKLTYLSCDCF 127 (254)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCS-----SCC---CHHHHSTTC---C
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhccc-----CCC---CHHHHHHHhCCCC
Confidence 34555556666666666677888888888777778889999999999999985441 121 244555554 48
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
+.++|..+-..|.+...
T Consensus 128 ~~~~i~~mE~~IL~~L~ 144 (254)
T 2f2c_A 128 TNLELINQEKDILEALK 144 (254)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 99999999999988875
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=83.22 E-value=6.8 Score=37.57 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=61.5
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CCC
Q 037972 144 NFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YVD 221 (480)
Q Consensus 144 ~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~d 221 (480)
+||......+++.......|..+++..+....+.....-.||+|||++|.+.-+. .|. ....+..++ .++
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~-----~p~---~~~~~~~~~~~~~~ 133 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET-----IPL---TAEKLCIYTDNSIR 133 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS-----SCC---CHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc-----CCC---CHHHHHHHhcCCCC
Confidence 4444445555665556666778888877777778889999999999999985441 121 134555554 489
Q ss_pred HHHHHHHHHHHHHHHh
Q 037972 222 EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ~edL~~C~~lL~el~~ 237 (480)
+++|..+-..|.+...
T Consensus 134 ~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 134 PEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999998775
No 32
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=81.85 E-value=5.5 Score=37.91 Aligned_cols=86 Identities=10% Similarity=-0.093 Sum_probs=60.9
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CCC
Q 037972 144 NFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YVD 221 (480)
Q Consensus 144 ~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~d 221 (480)
+||......+++.....-.|..+++..+..........-.||+|||++|.+.-+. .|. ....+..++ .++
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~-----~~p---~~~d~~~~~~~~~~ 127 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSL-----TPI---STSSLCYAAADSFS 127 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCS-----SCC---CHHHHHHHTTTCSC
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccc-----cCC---CHHHHHHHHCCCCC
Confidence 4555555566666666666777888777766677778889999999999985441 121 244555554 489
Q ss_pred HHHHHHHHHHHHHHHh
Q 037972 222 EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ~edL~~C~~lL~el~~ 237 (480)
.++|..+-..|.+...
T Consensus 128 ~~~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 128 RQELIDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999988775
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=79.93 E-value=7.8 Score=38.21 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=61.1
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CCC
Q 037972 144 NFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YVD 221 (480)
Q Consensus 144 ~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~d 221 (480)
+||......+++...+.-.|..+++..+....+.....-.||++||++|.+.-.. .|. ....+..++ .|+
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~-----~p~---~~~~l~~~~~~~~~ 147 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRET-----TPL---TIEKLCIYTDHAVS 147 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCS-----SCC---CTTHHHHHTTTSSC
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccC-----CCC---CHHHHHHHhccCcc
Confidence 4555555566666666666777787777767777889999999999999984441 121 133455444 489
Q ss_pred HHHHHHHHHHHHHHHh
Q 037972 222 EDSLDSFCTMLDHMCC 237 (480)
Q Consensus 222 ~edL~~C~~lL~el~~ 237 (480)
+++|..+-..|.+.+.
T Consensus 148 ~~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 148 PRQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999988775
No 34
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=77.51 E-value=4.6 Score=38.27 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhc
Q 037972 142 AVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLL 197 (480)
Q Consensus 142 P~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~ 197 (480)
..+||......+++...+...|..+++..+....+..+.+-.||+|||++|.+.-+
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE 89 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEE 89 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhcccc
Confidence 45677777788888887888899999999888889999999999999999998444
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=76.82 E-value=12 Score=36.37 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=58.3
Q ss_pred hHHHHHHHHhcccchHHHHHHHHHHHHhcc-ccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc--CC
Q 037972 144 NFVPFFLNISSAKGIKRRHVNRIIIEAQAD-LSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST--YV 220 (480)
Q Consensus 144 ~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD-~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t--g~ 220 (480)
+||......+++.....-.|..+++..+.- ........-.||+|||++|.+.-+. .| +....+..++ .+
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~-----~~---p~l~~~~~i~~~~~ 126 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEI-----YP---PKLHQFAYVTDGAC 126 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCS-----SC---CCHHHHHHTTTTSS
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhccc-----CC---CcHHHHHHHHcCCC
Confidence 344444455555555555677777766554 3456788899999999999985441 11 1244555555 58
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
+.++|..+-..|.+...
T Consensus 127 ~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 127 SGDEILTMELMIMKALK 143 (283)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999988875
No 36
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=75.70 E-value=5.6 Score=37.59 Aligned_cols=86 Identities=12% Similarity=-0.063 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhcc----
Q 037972 143 VNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDST---- 218 (480)
Q Consensus 143 ~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~t---- 218 (480)
.+||......+++...+...|..+++..+....+..+.+-.||+|||++|.+.-+ . |.. ...+....
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-----~-~~~---l~d~~~~~~~~~ 115 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-----T-PKK---CKDIIKTARSLL 115 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-----C-CCC---HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-----c-ccc---HHHHHHHHHHHh
Confidence 4677777788888887888899999998888888999999999999999998433 1 222 22332211
Q ss_pred ---------CCCHHHHHHHHHHHHHHHh
Q 037972 219 ---------YVDEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 219 ---------g~d~edL~~C~~lL~el~~ 237 (480)
...+++|..+-..|.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~i~~~E~~iL~~L~ 143 (258)
T 2i53_A 116 NDVQFGQFGDDPKEEVMVLERILLQTIK 143 (258)
T ss_dssp CHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHCC
Confidence 1135678888887777664
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=72.86 E-value=5.1 Score=40.58 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhc
Q 037972 142 AVNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLL 197 (480)
Q Consensus 142 P~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~ 197 (480)
..+||..+...+++...+...|..|++..+....+..+.+-.||+|||++|.+.-+
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE 96 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEE 96 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhcc
Confidence 55677777777777777778899999999888889999999999999999998444
No 38
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=55.54 E-value=56 Score=31.26 Aligned_cols=87 Identities=11% Similarity=-0.112 Sum_probs=59.7
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhc--cCC
Q 037972 143 VNFVPFFLNISSAKGIKRRHVNRIIIEAQADLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDS--TYV 220 (480)
Q Consensus 143 ~~FL~~fL~~L~~~~~l~~~A~~lL~lsLlD~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~--tg~ 220 (480)
.+||......+++.....-.|..+++..+..........-.||++||++|.+.-.. .|. ....+..+ ..|
T Consensus 53 vdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~-----~p~---~~~~l~~~~~~~y 124 (252)
T 1f5q_B 53 TTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY-----MPI---KATQLAYLCGGAT 124 (252)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS-----SCC---CHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhc-----CCC---CHHHHHHHhCCCC
Confidence 34555555566666666666777777776666666778889999999999984441 121 13344444 358
Q ss_pred CHHHHHHHHHHHHHHHh
Q 037972 221 DEDSLDSFCTMLDHMCC 237 (480)
Q Consensus 221 d~edL~~C~~lL~el~~ 237 (480)
+.++|...-..|.+...
T Consensus 125 t~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 125 TADKLLTLEVKSLDTLS 141 (252)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 89999998888888774
No 39
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=54.66 E-value=56 Score=32.62 Aligned_cols=88 Identities=14% Similarity=-0.035 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHHhcccchHHHHHHHHHHHHhc---cccccCccHHHHHHHHHHHHHHHhcccCCCCCCCcccchhhhhhc
Q 037972 141 VAVNFVPFFLNISSAKGIKRRHVNRIIIEAQA---DLSFASCKPSVIAAAALVHVCKLLLRDENGERPDAKRCRESLIDS 217 (480)
Q Consensus 141 TP~~FL~~fL~~L~~~~~l~~~A~~lL~lsLl---D~~fl~Y~PSvIAAAALllAl~~L~~~e~~~~p~~~~~~~~L~~~ 217 (480)
+..+||..+++...+.....-.+..||+.... ..........-|-.+||++|.+.+++ .+.+...+.++
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD--------~~ysN~~wAkV 147 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCD--------SFSTNAHYAKV 147 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCS--------SCCCHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccc--------cccChhHhhhc
Confidence 56678887777776665444444455553332 23334567888889999999998882 12236778888
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 037972 218 TYVDEDSLDSFCTMLDHMC 236 (480)
Q Consensus 218 tg~d~edL~~C~~lL~el~ 236 (480)
.|++..+|...-..+..+.
T Consensus 148 gGisl~ELN~LE~eFL~lL 166 (293)
T 2pmi_B 148 GGVRCHELNILENDFLKRV 166 (293)
T ss_dssp HTSCHHHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHHc
Confidence 9999999987766666555
No 40
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=42.48 E-value=18 Score=33.91 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhC---CCCCchHHHHHH-----HHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccC--CCcc
Q 037972 37 PRAIKVILQNSKSN---KRNAYIPYLALN-----YFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQS--FSFS 106 (480)
Q Consensus 37 ~~LVDWMieV~~~l---kLs~eTl~LAVn-----yLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~--vPL~ 106 (480)
..+|-||..|-..+ |.....|-.-.| +|=|=+-...+.. ..+||.+-.|||+||--|-... .|+.
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~t-----e~eLqa~vLTCLYlsYSYmGNEISYPLK 147 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGS-----DHELQAVLLTCLYLSYSYMGNEISYPLK 147 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHHHHHHHCSSSCCCSG
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCC-----HHHHHHHHHHHHHHHHHhhCccccccCc
Confidence 56888888887743 333333322222 2333222223322 4579999999999999887554 5898
Q ss_pred cccccCCC
Q 037972 107 DFMAGNNL 114 (480)
Q Consensus 107 dL~v~~sK 114 (480)
-|.++++|
T Consensus 148 PFlve~~k 155 (208)
T 1unl_D 148 PFLVESCK 155 (208)
T ss_dssp GGCCSSCH
T ss_pred ceeecCCH
Confidence 88777764
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=37.03 E-value=21 Score=32.06 Aligned_cols=75 Identities=8% Similarity=0.082 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHhhhC---CCCCchHHHHH-----HHHHHHhcCCCCCCccCCcccccchhhhhHHHHhhhhhccC--CC
Q 037972 35 LRPRAIKVILQNSKSN---KRNAYIPYLAL-----NYFDRFISKHTLPEVLGNVEDDLVLAANCCLIIAWKLRDQS--FS 104 (480)
Q Consensus 35 mR~~LVDWMieV~~~l---kLs~eTl~LAV-----nyLDRFLS~~~i~~dkp~mK~~LQLLAvACLfIAAK~EE~~--vP 104 (480)
.=..+|-|+..|-..+ |.....|-.-. +++=|=+-...+.. ..++|-+-.|||+||--|-... .|
T Consensus 26 ~p~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~s-----e~eLqa~~lTCLYlsYSYmGNEISYP 100 (149)
T 3o0g_D 26 SPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGS-----DHELQAVLLTCLYLSYSYMGNEISYP 100 (149)
T ss_dssp CTHHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCS-----HHHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred CcchhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCC-----HHHHHHHHHHHHHHHHHHhccccccc
Confidence 3467888998887753 33333333222 33333332333332 4569999999999999887554 58
Q ss_pred cccccccCCC
Q 037972 105 FSDFMAGNNL 114 (480)
Q Consensus 105 L~dL~v~~sK 114 (480)
+.-|.++++|
T Consensus 101 LKPFlv~~~k 110 (149)
T 3o0g_D 101 LKPFLVESCK 110 (149)
T ss_dssp SGGGCCCSCH
T ss_pred CcchhhcccH
Confidence 9888777764
No 42
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=24.45 E-value=2e+02 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHhhhCCCCCchHHHHHHHHHHHhcCCC------CCCccCCcccccchhhhhHHHHhhhhhccCCCcccc
Q 037972 43 ILQNSKSNKRNAYIPYLALNYFDRFISKHT------LPEVLGNVEDDLVLAANCCLIIAWKLRDQSFSFSDF 108 (480)
Q Consensus 43 MieV~~~lkLs~eTl~LAVnyLDRFLS~~~------i~~dkp~mK~~LQLLAvACLfIAAK~EE~~vPL~dL 108 (480)
+.++|..||+. +..-.|-.+|++|=.... +.-.+ -..+++|+|.|+|..-..|+-..|
T Consensus 6 v~dLcVqfgc~-e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~-------P~f~aaA~~~acr~~K~kVdK~KL 69 (95)
T 3m03_A 6 IRDLAVQFSCI-EAVNMASKILKSYESSLPQTQQVDLDLSR-------PLFTSAALLSACKILKLKVDKNKM 69 (95)
T ss_dssp HHHHHHHHTCG-GGHHHHHHHHHHHHTTSCHHHHHHCCTTS-------HHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHhCCH-HHHHHHHHHHHHHHHHhHHHhhccccccc-------cHHHHHHHHHHHHHHccCCCHHHH
Confidence 46788889984 578888999999975532 12223 366889999999998877765444
Done!