BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037973
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
I+H+P +L LDEP GLD +++++++ G VI+ H ++ +DR++ L
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVL 211
Query: 106 SRGQTVYSGSPMNL-----PHFF 123
+G+ V+ G+ M P FF
Sbjct: 212 EKGKKVFDGTRMEFLEKYDPRFF 234
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
I+H+P +L LDEP GLD +++++++ G VI+ H ++ +DR++ L
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVL 213
Query: 106 SRGQTVYSGSPMNL-----PHFF 123
+G+ V+ G+ M P FF
Sbjct: 214 EKGKKVFDGTRMEFLEKYDPRFF 236
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108
+P L LDEPTSGLD +A V K+L++ +Q G +++S H + L DR+ + G
Sbjct: 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN-MLEVEFLCDRIALIHNG 222
Query: 109 QTVYSGSPMNLPHFF 123
V +G+ L +
Sbjct: 223 TIVETGTVEELKERY 237
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY-RILGLLDRMIFLSR 107
+P ++ DEPTS LD V+ V++++A G +++ H+ + R +G DR++F+
Sbjct: 156 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG--DRVLFMDG 213
Query: 108 GQTVYSGSPMNLPHFFDEFGH 128
G + G P +L FD H
Sbjct: 214 GYIIEEGKPEDL---FDRPQH 231
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY-RILGLLDRMIFLSR 107
+P ++ DEPTS LD V+ V++++A G +++ H+ + R +G DR++F+
Sbjct: 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG--DRVLFMDG 234
Query: 108 GQTVYSGSPMNLPHFFDEFGH 128
G + G P +L FD H
Sbjct: 235 GYIIEEGKPEDL---FDRPQH 252
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108
+P +L DEPTS LD V++++Q++A+ G +++ H+ + + +IFL +G
Sbjct: 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 229
Query: 109 QTVYSGSPMNLPHFFDEFGHP 129
+ G P + FG+P
Sbjct: 230 KIEEEGDPEQV------FGNP 244
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90
++PILLF DEPT LDS + V+ + +I + G+ ++M H+
Sbjct: 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 46 IIHDPILLFLDEPTSGLDS---TSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM 102
++ DP LL LDEP S LD+ SA +VK +Q ++ G +++ H P+ I + DR+
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHDPA-DIFAIADRV 211
Query: 103 IFLSRGQTVYSGSPMNL 119
L +G+ V G P +L
Sbjct: 212 GVLVKGKLVQVGKPEDL 228
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 46 IIHDPILLFLDEPTSGLDS---TSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM 102
++ DP LL LDEP S LD+ SA +VK +Q ++ G +++ H P+ I + DR+
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHDPA-DIFAIADRV 211
Query: 103 IFLSRGQTVYSGSPMNL 119
L +G+ V G P +L
Sbjct: 212 GVLVKGKLVQVGKPEDL 228
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ DP ++ DE TS LDS + Y+ K ++ + ++ +++I++ H+ S + + +I L
Sbjct: 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA-HRLS--TISSAESIILL 226
Query: 106 SRGQTVYSGSPMNLPHFFDEFGH 128
++G+ V G+ +L E+
Sbjct: 227 NKGKIVEKGTHKDLLKLNGEYAE 249
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ +P +L LDEP S LD+ V L+R+ + I + + L + DR+ +
Sbjct: 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVI 207
Query: 106 SRGQTVYSGSP 116
G+ + G+P
Sbjct: 208 REGEILQVGTP 218
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
I+ +P +L +DEP S LD+ + ++++ Q + + + + + DR+ +
Sbjct: 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215
Query: 106 SRGQTVYSGSP 116
+RGQ + GSP
Sbjct: 216 NRGQLLQIGSP 226
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
I+ +P +L +DEP S LD+ + ++++ Q + + + + + DR+ +
Sbjct: 157 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 216
Query: 106 SRGQTVYSGSP 116
+RGQ + GSP
Sbjct: 217 NRGQLLQIGSP 227
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI-VIMSIHQPSYRILGLLDRMIFLSR 107
L+ LDEPTS LD + +V+ +L +AQS ++ V+ + HQP+ +++ + ++ + L++
Sbjct: 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK 204
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
+ D L LDEP S LD S + +VL+ + G +I+ H+ Y L +D ++ +
Sbjct: 155 LARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEY--LDDMDFILHI 212
Query: 106 SRGQTVYSGS 115
S G + GS
Sbjct: 213 SNGTIDFCGS 222
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQ----PSYRILGLLD 100
++ +P +L LDEPT+GLD ++K+L + + G +I++ H P Y D
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY-----CD 212
Query: 101 RMIFLSRGQTVYSGSP 116
+ + G+ + G+P
Sbjct: 213 NVFVMKEGRVILQGNP 228
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH 89
++ +P +L LDE TS LD+ + Y+V + L R+ ++++++ H
Sbjct: 529 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 47 IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106
+ +P +L LDE T+ LDS S MV K L + + + ++++ H+ S + D++ F+
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA-HRLSTIVDA--DKIYFIE 211
Query: 107 RGQTVYSGSPMNL 119
+GQ SG L
Sbjct: 212 KGQITGSGKHNEL 224
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 50 PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109
P LFLDEPTS LD +++L+++ + + + + DR++ L++G+
Sbjct: 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGK 225
Query: 110 TVYSGSP 116
V G+P
Sbjct: 226 LVACGTP 232
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRI-AQSGSIVIMSIHQPSYRILGLLDRMIFLS 106
++P ++ DEPT LDS + + ++L+++ + G V++ H + G +R+I+L
Sbjct: 162 NNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFG--ERIIYLK 219
Query: 107 RGQ 109
G+
Sbjct: 220 DGE 222
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 46 IIHDPILLFLDEPTSGLDST-SAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104
++ +P + LDEP S LD+ M +++ + + G +I H + L D+++
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVV 206
Query: 105 LSRGQTVYSGSPMNLPHF 122
L G+ G P+ L H+
Sbjct: 207 LDAGRVAQVGKPLELYHY 224
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 46 IIHDPILLFLDEPTSGLDST-SAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104
++ +P + LDEP S LD+ M +++ + + G +I H + L D+++
Sbjct: 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVV 206
Query: 105 LSRGQTVYSGSPMNLPHF 122
L G+ G P+ L H+
Sbjct: 207 LDAGRVAQVGKPLELYHY 224
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMS 87
++ +P +L LDE TS LD+ + Y+V + L R+ ++++++
Sbjct: 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 539
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRI-AQSGSIVIMSIHQPSYRILGLLDRMIFLS 106
++P ++ D+PT LDS + ++++L+++ + G V++ H + G +R+I+L
Sbjct: 162 NNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG--ERIIYLK 219
Query: 107 RGQ 109
G+
Sbjct: 220 DGE 222
>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
pdb|3EQ1|B Chain B, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
Length = 361
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 231 SVTNSRRMPELFGIRAG------AVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTT 284
+ T P++ IR G A I T ++AT L +S G+Q F AMSTT
Sbjct: 8 AATAEENSPKMRVIRVGTRKSQLARIQTDSVVAT----LKASYPGLQ----FEIIAMSTT 59
Query: 285 FYTCADALPVFLQERYIFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAI 338
D + E+ +F +E H + ++ H+L LP ++ F AI
Sbjct: 60 GDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAI 113
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ +P +L LDE TS LD+ S +V + L + A+ + +I++ + R D +I
Sbjct: 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN---ADLIISC 625
Query: 106 SRGQTVYSG 114
GQ V G
Sbjct: 626 KNGQVVEVG 634
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90
++ +P +L LDE TS LD+ S +V + L R A+ G I+ H+
Sbjct: 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase
pdb|3ECR|B Chain B, Structure Of Human Porphobilinogen Deaminase
Length = 364
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 231 SVTNSRRMPELFGIRAG------AVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTT 284
+ T P++ IR G A I T ++AT L +S G+Q F AMSTT
Sbjct: 11 AATAEENSPKMRVIRVGTRKSQLARIQTDSVVAT----LKASYPGLQ----FEIIAMSTT 62
Query: 285 FYTCADALPVFLQERYIFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAI 338
D + E+ +F +E H + ++ H+L LP ++ F AI
Sbjct: 63 GDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAI 116
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 46 IIHDPILLFLDEPTSGLDST-SAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104
++ +P + LD+P S LD+ M +++ + + G +I H + L D+++
Sbjct: 148 LVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVV 206
Query: 105 LSRGQTVYSGSPMNLPHF 122
L G+ G P+ L H+
Sbjct: 207 LDAGRVAQVGKPLELYHY 224
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 50 PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109
P LL DEP+ GL V +V+Q+I Q G+ +++ + Q + L + L GQ
Sbjct: 158 PKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQ 216
Query: 110 TVYSGSPMNL 119
V G L
Sbjct: 217 IVLEGKASEL 226
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRI-AQSGSIVIMSIHQPSYRILGLLDRMIFLS 106
++P ++ D+PT LDS + ++++L+++ + G V++ H + G +R+I+L
Sbjct: 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG--ERIIYLK 219
Query: 107 RGQ 109
G+
Sbjct: 220 DGE 222
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSI--HQPSYRILGLLDRMI 103
++ +P +L LDEP S LD + ++L + + + ++ I Q RI+ DR+
Sbjct: 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA--DRIA 199
Query: 104 FLSRGQTVYSGSP 116
+ G+ + G P
Sbjct: 200 VVMDGKLIQVGKP 212
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTV 111
LL LD+P + LD + K+L ++Q G ++MS H ++ L R L G+ +
Sbjct: 154 LLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKML 212
Query: 112 YSG------SPMNLPHFF 123
SG +P NL +
Sbjct: 213 ASGRREEVLTPPNLAQAY 230
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTV 111
LL LDEP + LD + K+L ++Q G ++ S H ++ L R L G+ +
Sbjct: 154 LLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNH-TLRHAHRAWLLKGGKXL 212
Query: 112 YSG------SPMNLPHFF 123
SG +P NL +
Sbjct: 213 ASGRREEVLTPPNLAQAY 230
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 54 FLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113
F DEP+S LD V +V++R+A G V++ H L +LD +LS V
Sbjct: 237 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD-----LAVLD---YLSDVIHVVY 288
Query: 114 GSP 116
G P
Sbjct: 289 GEP 291
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTV 111
LL LDEP + LD + K+L + Q G ++ S H ++ L R L G+ +
Sbjct: 154 LLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNH-TLRHAHRAWLLKGGKXL 212
Query: 112 YSG------SPMNLPHFF 123
SG +P NL +
Sbjct: 213 ASGRREEVLTPPNLAQAY 230
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 54 FLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113
F DEP+S LD V +V++R+A G V++ H L +LD +LS V
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD-----LAVLD---YLSDVIHVVY 302
Query: 114 GSP 116
G P
Sbjct: 303 GEP 305
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTV 111
LL LD+P LD + K+L ++Q G ++MS H ++ L R L G+ +
Sbjct: 154 LLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKML 212
Query: 112 YSG------SPMNLPHFF 123
SG +P NL +
Sbjct: 213 ASGRREEVLTPPNLAQAY 230
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ P +L LDE TS LD+ S +V + L + A+ G I+ H+ S + D ++ +
Sbjct: 1186 LVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS--TIQNADLIVVI 1242
Query: 106 SRGQTVYSGSPMNL 119
G+ G+ L
Sbjct: 1243 QNGKVKEHGTHQQL 1256
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92
++ +P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ P +L LDE TS LD+ S +V + L + A+ G I+ H+ S + D ++ +
Sbjct: 1186 LVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS--TIQNADLIVVI 1242
Query: 106 SRGQTVYSGSPMNL 119
G+ G+ L
Sbjct: 1243 QNGKVKEHGTHQQL 1256
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92
++ +P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
I+ P + +DEP S LD+ + L+++ + + + + + + DR+ +
Sbjct: 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM 213
Query: 106 SRGQTVYSGSP 116
+RG GSP
Sbjct: 214 NRGVLQQVGSP 224
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI------MSIHQPSYRILGLLDRMIFL 105
L LD+P+S LD Y+V K ++R+ + V +SIH + DR+I
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY------IADRIIVF 459
Query: 106 SRGQTVYSG---SPMNLPHFFDEF 126
+G+ +G SP+ L +EF
Sbjct: 460 -KGEPEKAGLATSPVTLKTGMNEF 482
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS----- 106
L LDEPT+GL ++ VL R+ +G V++ H + ++ D +I L
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGD 926
Query: 107 -RGQTVYSGSPMNL 119
GQ V G+P +
Sbjct: 927 RGGQIVAVGTPEEV 940
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS----- 106
L LDEPT+GL ++ VL R+ +G V++ H + ++ D +I L
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGD 926
Query: 107 -RGQTVYSGSP 116
GQ V G+P
Sbjct: 927 RGGQIVAVGTP 937
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 52 LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS----- 106
L LDEPT+GL ++ VL R+ +G V++ H + ++ D +I L
Sbjct: 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGD 624
Query: 107 -RGQTVYSGSP 116
GQ V G+P
Sbjct: 625 RGGQIVAVGTP 635
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ D +L LDE TS LD+ S + L + ++ ++++++ H+ S + D ++ +
Sbjct: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA-HRLS--TIEQADEILVV 551
Query: 106 SRGQTVYSGSPMNL 119
G+ + G +L
Sbjct: 552 DEGEIIERGRHADL 565
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 49 DPILLFLDEPTSGLDS-TSAYMV 70
DP++L LDEPTS LD T A+++
Sbjct: 172 DPVVLILDEPTSALDVLTQAHII 194
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ--SGSIVIMSIHQPSYRILGLLDRMI 103
+I P +L LD+ TS LD+ S V ++L + S S+++++ H ++ D ++
Sbjct: 169 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH---LSLVEQADHIL 225
Query: 104 FLSRGQTVYSGSPMNL 119
FL G G+ L
Sbjct: 226 FLEGGAIREGGTHQQL 241
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPSYRILGLLDR--- 101
+I P LL LD+ TS LD+ + V ++L + + V++ HQ L L +R
Sbjct: 171 LIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ-----LSLAERAHH 225
Query: 102 MIFLSRGQTVYSGSPMNL 119
++FL G G+ + L
Sbjct: 226 ILFLKEGSVCEQGTHLQL 243
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105
++ P +L DEP S LD+ ++ ++ + Q I + + + + R+
Sbjct: 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVF 207
Query: 106 SRGQTVYSGSP 116
++G+ V G+P
Sbjct: 208 NQGKLVQYGTP 218
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 51 ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL----- 105
++ LDEP++GL ++ L+ + + G+ + + H L ++ R +L
Sbjct: 401 VVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD-----LDVIRRADWLVDVGP 455
Query: 106 ----SRGQTVYSGSPMNLPH 121
G+ +YSG P L H
Sbjct: 456 EAGEKGGEILYSGPPEGLKH 475
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 160 FNKTWQNMKQSRNTNAHSDSQGLSLKEAISASIS 193
++ TWQN +T S SQGLS+ A SA I+
Sbjct: 330 YSHTWQNTSTVDDTTGESFSQGLSINTAESAYIN 363
>pdb|2XWI|A Chain A, Siap R147k Mutant In Complex With Neu5ac
Length = 308
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 137 TEFALDLIRELEGSPGGTKSLVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISAS-ISRG 195
TEF DLI++++ G T +N T Q +R N+ +D +GL LK +A+ ++
Sbjct: 100 TEFGKDLIKKMDKDLGVTLLSQAYNGTRQTT-SNRAINSIADMKGLKLKVPNAATNLAYA 158
Query: 196 KLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNSRRMP 239
K V +SPT M A+ E+ + Q + + + P
Sbjct: 159 KYV-------GASPTPM-------AFSEVYLALQTNAVDGQENP 188
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 49 DPILLFLDEPTSGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107
DP L+ LDEP S LD + + ++ + +G + H L DR+ + +
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMKQ 214
Query: 108 GQTVYSGSPMNL 119
G+ + + SP L
Sbjct: 215 GRILQTASPHEL 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,704,983
Number of Sequences: 62578
Number of extensions: 526156
Number of successful extensions: 966
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 78
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)