Query 037973
Match_columns 525
No_of_seqs 254 out of 2975
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1.3E-87 2.8E-92 737.8 46.7 467 2-525 141-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-85 8.4E-90 724.2 52.0 473 2-524 136-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 8.9E-83 1.9E-87 706.1 50.1 466 3-521 178-659 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-82 3.4E-87 752.6 47.3 492 7-520 185-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 7E-81 1.5E-85 738.5 53.3 496 3-522 874-1392(1394)
6 PLN03140 ABC transporter G fam 100.0 4.7E-80 1E-84 729.3 53.2 464 3-524 991-1470(1470)
7 PLN03140 ABC transporter G fam 100.0 5.6E-80 1.2E-84 728.7 47.9 461 6-520 311-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 2.1E-77 4.5E-82 668.4 31.6 470 2-500 901-1390(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.4E-76 1.2E-80 657.1 36.1 481 6-520 235-730 (1391)
10 COG1126 GlnQ ABC-type polar am 99.9 5.1E-27 1.1E-31 219.1 12.3 112 2-119 112-223 (240)
11 COG1135 AbcC ABC-type metal io 99.9 9.4E-27 2E-31 227.7 10.4 112 2-119 117-229 (339)
12 COG4555 NatA ABC-type Na+ tran 99.9 2E-25 4.3E-30 205.7 11.3 113 2-120 109-221 (245)
13 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.9E-25 6.3E-30 215.6 12.5 111 3-120 116-226 (254)
14 COG1120 FepC ABC-type cobalami 99.9 3.7E-25 8.1E-30 215.9 12.6 112 3-120 115-227 (258)
15 COG1131 CcmA ABC-type multidru 99.9 4.6E-25 1E-29 222.9 12.5 115 3-123 113-228 (293)
16 COG1122 CbiO ABC-type cobalt t 99.9 1.2E-24 2.5E-29 211.9 9.8 112 2-119 114-226 (235)
17 COG1127 Ttg2A ABC-type transpo 99.9 2.3E-24 5E-29 204.3 11.0 112 3-120 121-234 (263)
18 COG0444 DppD ABC-type dipeptid 99.9 3.3E-24 7.1E-29 212.6 11.3 114 3-119 127-241 (316)
19 COG3638 ABC-type phosphate/pho 99.9 6.2E-24 1.4E-28 200.8 10.0 113 2-120 123-236 (258)
20 COG1125 OpuBA ABC-type proline 99.9 1E-23 2.3E-28 200.8 11.0 113 2-120 109-224 (309)
21 COG1124 DppF ABC-type dipeptid 99.9 1.3E-23 2.9E-28 199.9 10.5 112 3-120 117-230 (252)
22 COG1123 ATPase components of v 99.9 1.7E-23 3.7E-28 221.5 12.2 115 2-120 128-243 (539)
23 PRK13537 nodulation ABC transp 99.9 2.3E-23 4.9E-28 212.2 12.7 111 4-120 116-226 (306)
24 TIGR02314 ABC_MetN D-methionin 99.9 2.4E-23 5.2E-28 214.4 12.6 111 3-119 117-228 (343)
25 COG1136 SalX ABC-type antimicr 99.9 3.2E-23 7E-28 198.6 12.2 101 3-110 118-220 (226)
26 TIGR01188 drrA daunorubicin re 99.9 4.6E-23 1E-27 209.8 12.8 111 4-120 102-212 (302)
27 COG3840 ThiQ ABC-type thiamine 99.9 3.7E-23 8.1E-28 187.8 10.6 112 2-119 105-217 (231)
28 PRK13643 cbiO cobalt transport 99.9 7.4E-23 1.6E-27 206.9 13.7 124 3-132 120-247 (288)
29 cd03261 ABC_Org_Solvent_Resist 99.9 8E-23 1.7E-27 200.6 12.3 110 4-119 114-224 (235)
30 PRK13536 nodulation factor exp 99.9 8.8E-23 1.9E-27 210.4 12.8 111 4-120 150-260 (340)
31 PRK13634 cbiO cobalt transport 99.9 2.2E-22 4.7E-27 203.7 14.2 110 4-119 122-233 (290)
32 PRK13647 cbiO cobalt transport 99.9 2.6E-22 5.5E-27 201.6 14.2 109 4-118 116-224 (274)
33 PRK13637 cbiO cobalt transport 99.9 2.5E-22 5.5E-27 202.9 14.2 110 4-119 120-232 (287)
34 PRK13651 cobalt transporter AT 99.9 2.2E-22 4.8E-27 204.7 13.8 110 4-119 142-252 (305)
35 TIGR03258 PhnT 2-aminoethylpho 99.9 1.5E-22 3.2E-27 210.2 12.5 111 3-119 114-226 (362)
36 PRK11650 ugpC glycerol-3-phosp 99.9 1.6E-22 3.4E-27 209.9 12.6 110 4-119 112-222 (356)
37 TIGR01257 rim_protein retinal- 99.9 1.3E-19 2.8E-24 217.9 39.1 113 4-123 1039-1151(2272)
38 PRK09536 btuD corrinoid ABC tr 99.9 1.6E-22 3.5E-27 212.0 12.7 110 4-119 117-226 (402)
39 cd03219 ABC_Mj1267_LivG_branch 99.9 2E-22 4.3E-27 197.9 12.5 110 4-119 121-230 (236)
40 cd03259 ABC_Carb_Solutes_like 99.9 2.5E-22 5.4E-27 194.1 12.9 105 4-114 108-213 (213)
41 TIGR01288 nodI ATP-binding ABC 99.9 1.9E-22 4.1E-27 205.4 12.6 109 5-119 114-222 (303)
42 cd03256 ABC_PhnC_transporter A 99.9 2.5E-22 5.3E-27 197.8 12.8 110 4-119 122-232 (241)
43 cd03265 ABC_DrrA DrrA is the A 99.9 2.4E-22 5.3E-27 195.2 12.4 109 4-118 109-218 (220)
44 PRK13631 cbiO cobalt transport 99.9 3.1E-22 6.8E-27 204.9 13.5 122 4-131 153-278 (320)
45 cd03260 ABC_PstB_phosphate_tra 99.9 4.3E-22 9.4E-27 194.3 13.8 110 4-118 117-226 (227)
46 PF01061 ABC2_membrane: ABC-2 99.9 6.8E-24 1.5E-28 202.6 1.0 207 222-429 1-210 (210)
47 TIGR01184 ntrCD nitrate transp 99.9 3.2E-22 7E-27 195.8 12.7 110 4-119 92-202 (230)
48 TIGR03265 PhnT2 putative 2-ami 99.9 2.5E-22 5.5E-27 208.0 12.5 111 3-119 111-222 (353)
49 cd03218 ABC_YhbG The ABC trans 99.9 2.8E-22 6E-27 196.3 12.2 110 4-119 111-220 (232)
50 TIGR02315 ABC_phnC phosphonate 99.9 3.3E-22 7.1E-27 197.2 12.5 110 4-119 123-233 (243)
51 PRK13636 cbiO cobalt transport 99.9 5.4E-22 1.2E-26 200.2 14.1 110 4-119 119-229 (283)
52 COG0411 LivG ABC-type branched 99.9 2.5E-22 5.4E-27 191.4 10.8 112 3-120 126-238 (250)
53 PRK10851 sulfate/thiosulfate t 99.9 3.2E-22 7E-27 207.3 12.6 110 4-119 114-224 (353)
54 PRK11432 fbpC ferric transport 99.9 3.1E-22 6.7E-27 207.1 12.4 111 3-119 113-224 (351)
55 cd03296 ABC_CysA_sulfate_impor 99.9 3.7E-22 8E-27 196.4 12.3 109 5-119 115-224 (239)
56 COG1137 YhbG ABC-type (unclass 99.9 2.3E-22 5E-27 185.4 9.9 113 2-120 115-227 (243)
57 PRK13638 cbiO cobalt transport 99.9 5.9E-22 1.3E-26 198.7 13.8 110 4-119 114-223 (271)
58 PRK11153 metN DL-methionine tr 99.9 3.8E-22 8.2E-27 206.4 12.5 110 4-119 118-228 (343)
59 cd03226 ABC_cobalt_CbiO_domain 99.9 5.6E-22 1.2E-26 190.6 12.8 101 5-111 105-205 (205)
60 cd03301 ABC_MalK_N The N-termi 99.9 5.6E-22 1.2E-26 191.6 12.8 105 4-114 108-213 (213)
61 PRK13641 cbiO cobalt transport 99.9 4.4E-22 9.4E-27 201.2 12.6 110 4-119 122-232 (287)
62 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.9E-22 1.1E-26 199.1 12.7 110 4-119 138-248 (269)
63 TIGR01186 proV glycine betaine 99.9 3.7E-22 8E-27 206.9 12.1 111 3-119 106-217 (363)
64 PRK09473 oppD oligopeptide tra 99.9 5.1E-22 1.1E-26 204.2 13.1 113 4-119 136-249 (330)
65 COG2884 FtsE Predicted ATPase 99.9 5.8E-22 1.2E-26 181.4 11.9 108 2-115 113-220 (223)
66 TIGR00960 3a0501s02 Type II (G 99.9 5.5E-22 1.2E-26 192.2 12.4 101 4-110 116-216 (216)
67 PRK15079 oligopeptide ABC tran 99.9 4.1E-22 8.9E-27 204.9 12.2 110 4-119 138-249 (331)
68 PRK11022 dppD dipeptide transp 99.9 5.1E-22 1.1E-26 203.9 12.9 114 3-119 127-241 (326)
69 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.3E-22 1.6E-26 191.9 13.3 108 4-117 109-219 (220)
70 COG4598 HisP ABC-type histidin 99.9 4E-22 8.6E-27 180.6 10.5 111 3-119 129-239 (256)
71 PRK11264 putative amino-acid A 99.9 5.4E-22 1.2E-26 196.5 12.5 110 4-119 122-231 (250)
72 PRK09493 glnQ glutamine ABC tr 99.9 5.6E-22 1.2E-26 195.2 12.5 110 4-119 114-223 (240)
73 PRK13650 cbiO cobalt transport 99.9 7.3E-22 1.6E-26 198.8 13.5 109 4-119 118-227 (279)
74 PRK11308 dppF dipeptide transp 99.9 6.1E-22 1.3E-26 203.4 12.9 111 3-119 130-242 (327)
75 PRK15093 antimicrobial peptide 99.9 5.9E-22 1.3E-26 204.0 12.8 113 4-119 133-246 (330)
76 cd03266 ABC_NatA_sodium_export 99.9 7.6E-22 1.6E-26 191.4 12.6 105 4-114 114-218 (218)
77 PRK11000 maltose/maltodextrin 99.9 5.2E-22 1.1E-26 207.1 12.3 110 4-119 111-221 (369)
78 cd03268 ABC_BcrA_bacitracin_re 99.9 7.4E-22 1.6E-26 190.1 12.4 105 4-114 104-208 (208)
79 COG1118 CysA ABC-type sulfate/ 99.9 5E-22 1.1E-26 194.3 11.0 112 2-119 113-225 (345)
80 TIGR03522 GldA_ABC_ATP gliding 99.9 5.1E-22 1.1E-26 202.1 11.6 110 4-120 111-220 (301)
81 PRK13639 cbiO cobalt transport 99.9 1.2E-21 2.6E-26 196.8 14.1 110 4-119 115-224 (275)
82 COG4175 ProV ABC-type proline/ 99.9 5.6E-22 1.2E-26 194.2 11.1 113 2-120 140-253 (386)
83 TIGR01187 potA spermidine/putr 99.9 8.2E-22 1.8E-26 202.5 12.7 110 4-119 78-188 (325)
84 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-21 2.4E-26 189.8 12.9 105 4-114 109-214 (214)
85 cd03258 ABC_MetN_methionine_tr 99.9 8.8E-22 1.9E-26 192.9 12.3 110 4-119 118-228 (233)
86 PRK09452 potA putrescine/sperm 99.9 7.5E-22 1.6E-26 205.7 12.4 110 4-119 122-232 (375)
87 TIGR03771 anch_rpt_ABC anchore 99.9 1.1E-21 2.3E-26 191.2 12.6 108 5-119 92-199 (223)
88 cd03235 ABC_Metallic_Cations A 99.9 1.3E-21 2.8E-26 189.2 13.0 104 4-114 110-213 (213)
89 TIGR02770 nickel_nikD nickel i 99.9 9.9E-22 2.1E-26 192.3 12.3 110 4-119 100-213 (230)
90 PRK13652 cbiO cobalt transport 99.9 1E-21 2.3E-26 197.5 12.8 110 4-119 115-225 (277)
91 PRK11300 livG leucine/isoleuci 99.9 8.9E-22 1.9E-26 195.5 12.1 109 5-119 132-241 (255)
92 COG1117 PstB ABC-type phosphat 99.9 3.5E-22 7.6E-27 186.0 8.5 114 2-119 121-235 (253)
93 PRK10771 thiQ thiamine transpo 99.9 1.1E-21 2.3E-26 192.3 12.5 110 4-119 107-217 (232)
94 PRK11831 putative ABC transpor 99.9 9.7E-22 2.1E-26 196.9 12.4 109 5-119 122-231 (269)
95 PRK11231 fecE iron-dicitrate t 99.9 1.1E-21 2.4E-26 194.9 12.5 110 4-119 116-225 (255)
96 PRK13646 cbiO cobalt transport 99.9 1.2E-21 2.7E-26 197.9 13.0 110 4-119 122-233 (286)
97 TIGR02142 modC_ABC molybdenum 99.9 1E-21 2.2E-26 204.1 12.5 110 4-119 109-219 (354)
98 cd03269 ABC_putative_ATPase Th 99.9 1.4E-21 3E-26 188.5 12.6 105 4-114 106-210 (210)
99 cd03263 ABC_subfamily_A The AB 99.9 1E-21 2.3E-26 190.7 11.7 108 4-118 111-218 (220)
100 PRK13649 cbiO cobalt transport 99.9 1.7E-21 3.7E-26 196.3 13.6 110 4-119 122-232 (280)
101 COG1116 TauB ABC-type nitrate/ 99.9 1.1E-21 2.4E-26 188.3 11.6 101 2-108 106-207 (248)
102 PRK10619 histidine/lysine/argi 99.9 1.6E-21 3.4E-26 194.1 13.1 110 4-119 129-239 (257)
103 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.6E-21 3.5E-26 188.2 12.8 105 4-114 106-211 (211)
104 PRK11144 modC molybdate transp 99.9 1.2E-21 2.6E-26 203.4 12.4 110 4-119 106-216 (352)
105 PRK13633 cobalt transporter AT 99.9 1.9E-21 4.1E-26 195.9 13.6 109 4-119 122-231 (280)
106 PRK09984 phosphonate/organopho 99.9 1.5E-21 3.2E-26 194.8 12.6 109 4-118 130-239 (262)
107 PRK10895 lipopolysaccharide AB 99.9 1.3E-21 2.8E-26 192.7 12.1 110 4-119 115-224 (241)
108 cd03224 ABC_TM1139_LivF_branch 99.9 1.1E-21 2.4E-26 190.7 11.4 110 4-119 109-219 (222)
109 TIGR03740 galliderm_ABC gallid 99.9 2E-21 4.3E-26 189.2 12.8 109 4-118 102-210 (223)
110 TIGR03411 urea_trans_UrtD urea 99.9 1.6E-21 3.4E-26 192.3 12.3 109 4-119 121-229 (242)
111 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.6E-21 3.5E-26 192.3 12.3 110 4-119 111-223 (242)
112 TIGR00972 3a0107s01c2 phosphat 99.9 1.9E-21 4.1E-26 192.4 12.7 109 4-119 118-230 (247)
113 PRK11607 potG putrescine trans 99.9 1.4E-21 3E-26 204.0 12.4 111 3-119 126-237 (377)
114 TIGR01978 sufC FeS assembly AT 99.9 1.7E-21 3.7E-26 192.0 12.3 110 5-119 121-232 (243)
115 PRK11614 livF leucine/isoleuci 99.9 1.2E-21 2.5E-26 192.6 11.1 109 5-119 115-224 (237)
116 PRK13644 cbiO cobalt transport 99.9 1.8E-21 3.8E-26 195.5 12.5 109 4-119 114-222 (274)
117 TIGR03415 ABC_choXWV_ATP choli 99.9 1.5E-21 3.3E-26 203.2 12.5 111 3-119 141-252 (382)
118 TIGR02769 nickel_nikE nickel i 99.9 1.7E-21 3.6E-26 194.8 12.2 110 4-119 127-238 (265)
119 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.5E-21 5.4E-26 188.7 13.2 105 4-114 120-224 (224)
120 COG3839 MalK ABC-type sugar tr 99.9 9.6E-22 2.1E-26 199.1 10.4 112 2-119 109-221 (338)
121 cd03264 ABC_drug_resistance_li 99.9 2E-21 4.3E-26 187.5 12.2 104 4-114 108-211 (211)
122 PRK11124 artP arginine transpo 99.9 2.3E-21 4.9E-26 191.2 12.8 109 4-118 119-227 (242)
123 PRK10070 glycine betaine trans 99.9 1.9E-21 4.2E-26 203.8 12.7 110 4-119 142-252 (400)
124 TIGR03873 F420-0_ABC_ATP propo 99.9 2.1E-21 4.6E-26 193.0 12.4 109 5-119 116-224 (256)
125 PRK13648 cbiO cobalt transport 99.9 4.1E-21 9E-26 192.4 14.4 109 4-119 120-229 (269)
126 PRK10575 iron-hydroxamate tran 99.9 2.3E-21 5E-26 193.8 12.6 110 4-119 125-235 (265)
127 PRK10253 iron-enterobactin tra 99.9 2.5E-21 5.3E-26 193.6 12.7 109 5-119 122-231 (265)
128 cd03225 ABC_cobalt_CbiO_domain 99.9 2.8E-21 6.1E-26 186.4 12.5 100 4-109 112-211 (211)
129 PRK13635 cbiO cobalt transport 99.9 3.6E-21 7.9E-26 193.7 13.7 109 4-119 118-227 (279)
130 PRK13548 hmuV hemin importer A 99.9 2.9E-21 6.3E-26 192.3 12.6 110 4-119 112-228 (258)
131 PRK13645 cbiO cobalt transport 99.9 2.7E-21 5.9E-26 195.7 12.5 109 5-119 128-238 (289)
132 TIGR01277 thiQ thiamine ABC tr 99.9 4.3E-21 9.3E-26 185.6 13.2 106 4-115 106-212 (213)
133 COG1123 ATPase components of v 99.9 1.7E-21 3.7E-26 206.5 11.2 113 2-119 404-517 (539)
134 cd03234 ABCG_White The White s 99.9 5E-21 1.1E-25 186.8 13.8 104 6-114 122-226 (226)
135 PRK11247 ssuB aliphatic sulfon 99.9 4.6E-21 9.9E-26 190.6 13.7 108 4-117 111-219 (257)
136 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.3E-21 7.2E-26 189.3 12.5 109 4-119 110-219 (236)
137 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.8E-21 6.1E-26 187.4 11.8 100 4-110 118-218 (218)
138 cd03292 ABC_FtsE_transporter F 99.9 3.3E-21 7.2E-26 186.3 12.2 101 4-110 114-214 (214)
139 TIGR02673 FtsE cell division A 99.9 3.6E-21 7.9E-26 186.1 12.4 100 4-109 115-214 (214)
140 TIGR03005 ectoine_ehuA ectoine 99.9 3.5E-21 7.6E-26 191.0 12.5 110 4-119 124-234 (252)
141 PRK13640 cbiO cobalt transport 99.9 4.7E-21 1E-25 193.2 13.6 109 4-119 121-230 (282)
142 PRK11701 phnK phosphonate C-P 99.9 4.6E-21 1E-25 190.8 13.0 110 4-119 128-239 (258)
143 cd03267 ABC_NatA_like Similar 99.8 4.9E-21 1.1E-25 188.2 13.0 105 4-114 131-236 (236)
144 PRK03695 vitamin B12-transport 99.8 4.4E-21 9.5E-26 189.9 12.6 110 4-119 104-220 (248)
145 PRK15056 manganese/iron transp 99.8 5.6E-21 1.2E-25 191.7 13.2 109 4-119 120-228 (272)
146 PRK14268 phosphate ABC transpo 99.8 4.6E-21 9.9E-26 190.9 12.4 108 5-119 129-240 (258)
147 TIGR02323 CP_lyasePhnK phospho 99.8 5E-21 1.1E-25 190.0 12.6 110 4-119 125-236 (253)
148 PRK14250 phosphate ABC transpo 99.8 5.7E-21 1.2E-25 188.3 12.8 110 4-119 108-219 (241)
149 PRK11629 lolD lipoprotein tran 99.8 7.8E-21 1.7E-25 186.3 13.6 107 4-117 123-230 (233)
150 PRK09700 D-allose transporter 99.8 5E-21 1.1E-25 208.7 13.5 110 4-119 123-232 (510)
151 PRK10418 nikD nickel transport 99.8 5.9E-21 1.3E-25 189.6 12.8 109 5-119 116-228 (254)
152 cd03262 ABC_HisP_GlnQ_permease 99.8 5.8E-21 1.3E-25 184.4 12.4 101 4-110 113-213 (213)
153 PRK15112 antimicrobial peptide 99.8 4.9E-21 1.1E-25 191.6 12.3 110 4-119 126-237 (267)
154 cd03257 ABC_NikE_OppD_transpor 99.8 6.4E-21 1.4E-25 186.0 12.8 101 8-114 126-228 (228)
155 cd03299 ABC_ModC_like Archeal 99.8 6.1E-21 1.3E-25 187.3 12.5 110 4-119 107-217 (235)
156 PRK14245 phosphate ABC transpo 99.8 5.7E-21 1.2E-25 189.3 12.4 108 5-119 121-232 (250)
157 PRK11248 tauB taurine transpor 99.8 8.4E-21 1.8E-25 188.6 13.6 108 4-117 106-216 (255)
158 PRK10908 cell division protein 99.8 8.3E-21 1.8E-25 184.7 13.0 102 4-111 115-216 (222)
159 PRK10762 D-ribose transporter 99.8 7.6E-21 1.6E-25 206.8 13.9 110 4-119 119-228 (501)
160 COG4172 ABC-type uncharacteriz 99.8 3.4E-21 7.3E-26 193.8 10.3 115 2-119 130-245 (534)
161 PRK13549 xylose transporter AT 99.8 7.3E-21 1.6E-25 207.1 13.7 110 4-119 121-230 (506)
162 PRK10938 putative molybdenum t 99.8 5.3E-21 1.1E-25 207.5 12.6 110 4-119 113-222 (490)
163 CHL00131 ycf16 sulfate ABC tra 99.8 1.3E-20 2.8E-25 186.8 14.2 109 5-118 128-238 (252)
164 PRK13549 xylose transporter AT 99.8 7.7E-21 1.7E-25 206.9 13.7 109 5-119 383-492 (506)
165 PRK14273 phosphate ABC transpo 99.8 7.9E-21 1.7E-25 188.7 12.4 109 4-119 124-236 (254)
166 TIGR02211 LolD_lipo_ex lipopro 99.8 9.2E-21 2E-25 184.2 12.6 101 4-111 119-220 (221)
167 PRK13547 hmuV hemin importer A 99.8 8.7E-21 1.9E-25 190.1 12.5 110 4-119 123-242 (272)
168 PRK10419 nikE nickel transport 99.8 1.1E-20 2.3E-25 189.3 13.0 109 5-119 129-239 (268)
169 PRK09580 sufC cysteine desulfu 99.8 1.3E-20 2.8E-25 186.4 13.4 111 4-119 121-233 (248)
170 COG3842 PotA ABC-type spermidi 99.8 2.5E-21 5.5E-26 197.1 8.4 112 2-119 112-224 (352)
171 PRK14247 phosphate ABC transpo 99.8 9.7E-21 2.1E-25 187.6 12.4 109 4-119 120-232 (250)
172 PRK15439 autoinducer 2 ABC tra 99.8 9.3E-21 2E-25 206.4 13.4 110 4-119 118-227 (510)
173 PRK14242 phosphate transporter 99.8 9.7E-21 2.1E-25 187.9 12.4 109 4-119 123-235 (253)
174 PRK13632 cbiO cobalt transport 99.8 1.1E-20 2.3E-25 189.6 12.8 109 4-119 120-229 (271)
175 PRK13642 cbiO cobalt transport 99.8 1.5E-20 3.2E-25 189.2 13.8 109 4-119 118-227 (277)
176 PRK15134 microcin C ABC transp 99.8 8.6E-21 1.9E-25 207.7 12.6 111 3-119 130-244 (529)
177 cd03300 ABC_PotA_N PotA is an 99.8 1.2E-20 2.6E-25 184.9 12.4 110 4-119 108-218 (232)
178 TIGR03269 met_CoM_red_A2 methy 99.8 9.7E-21 2.1E-25 206.9 13.0 112 4-121 146-258 (520)
179 TIGR00968 3a0106s01 sulfate AB 99.8 1.2E-20 2.6E-25 185.5 12.4 110 4-119 108-218 (237)
180 TIGR03410 urea_trans_UrtE urea 99.8 9.5E-21 2.1E-25 185.3 11.5 109 5-119 109-219 (230)
181 COG4161 ArtP ABC-type arginine 99.8 1.1E-20 2.4E-25 168.4 10.8 111 2-118 117-227 (242)
182 PRK15439 autoinducer 2 ABC tra 99.8 1.2E-20 2.5E-25 205.6 13.4 109 5-119 381-490 (510)
183 PRK14244 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 186.7 12.5 108 5-119 124-235 (251)
184 COG4172 ABC-type uncharacteriz 99.8 8.1E-21 1.7E-25 191.1 10.8 113 2-119 401-514 (534)
185 PRK11288 araG L-arabinose tran 99.8 1.4E-20 3.1E-25 204.6 13.7 109 5-119 374-483 (501)
186 PRK13545 tagH teichoic acids e 99.8 1.4E-20 3.1E-25 200.2 13.3 110 5-120 122-231 (549)
187 PRK10261 glutathione transport 99.8 1.1E-20 2.3E-25 210.3 12.8 110 4-119 440-551 (623)
188 PRK10584 putative ABC transpor 99.8 2E-20 4.3E-25 182.7 13.0 103 4-113 124-227 (228)
189 PRK10744 pstB phosphate transp 99.8 1.5E-20 3.1E-25 187.5 12.3 109 4-119 130-242 (260)
190 cd03214 ABC_Iron-Siderophores_ 99.8 1.8E-20 3.9E-25 176.5 12.3 100 9-114 80-180 (180)
191 PRK14267 phosphate ABC transpo 99.8 1.5E-20 3.2E-25 186.6 12.2 108 5-119 124-235 (253)
192 PRK10982 galactose/methyl gala 99.8 1.6E-20 3.5E-25 203.7 13.6 110 4-119 112-221 (491)
193 PRK10762 D-ribose transporter 99.8 1.9E-20 4E-25 203.7 13.7 110 4-119 372-482 (501)
194 PRK09700 D-allose transporter 99.8 2.2E-20 4.8E-25 203.6 14.0 107 5-117 387-494 (510)
195 PRK14258 phosphate ABC transpo 99.8 2.2E-20 4.8E-25 186.3 12.7 110 4-119 124-243 (261)
196 PRK14269 phosphate ABC transpo 99.8 2E-20 4.3E-25 185.0 12.2 108 5-119 117-228 (246)
197 PRK15134 microcin C ABC transp 99.8 1.5E-20 3.3E-25 205.7 12.5 110 4-119 402-513 (529)
198 PRK14274 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 186.2 12.4 108 5-119 130-241 (259)
199 PRK14270 phosphate ABC transpo 99.8 2.2E-20 4.8E-25 185.2 12.2 109 4-119 121-233 (251)
200 PRK14235 phosphate transporter 99.8 2.2E-20 4.8E-25 186.9 12.3 109 4-119 137-249 (267)
201 PRK13546 teichoic acids export 99.8 3E-20 6.6E-25 185.4 13.0 109 5-119 122-230 (264)
202 COG4152 ABC-type uncharacteriz 99.8 9.1E-21 2E-25 179.7 8.6 114 2-121 106-219 (300)
203 TIGR02633 xylG D-xylose ABC tr 99.8 3.1E-20 6.7E-25 202.0 13.9 110 4-119 118-228 (500)
204 PRK10261 glutathione transport 99.8 1.7E-20 3.8E-25 208.6 12.1 110 4-119 143-256 (623)
205 PRK14239 phosphate transporter 99.8 2.7E-20 5.9E-25 184.6 12.2 108 5-119 123-234 (252)
206 PRK09544 znuC high-affinity zi 99.8 2.8E-20 6E-25 184.4 12.1 108 5-119 99-207 (251)
207 PRK14241 phosphate transporter 99.8 2.8E-20 6.1E-25 185.2 12.1 109 4-119 122-240 (258)
208 PRK14248 phosphate ABC transpo 99.8 2.9E-20 6.2E-25 186.2 12.2 108 5-119 139-250 (268)
209 PRK14256 phosphate ABC transpo 99.8 3.3E-20 7.1E-25 184.0 12.4 108 5-119 123-234 (252)
210 TIGR03269 met_CoM_red_A2 methy 99.8 2.6E-20 5.7E-25 203.5 12.7 110 4-119 400-515 (520)
211 PRK14253 phosphate ABC transpo 99.8 3.8E-20 8.3E-25 183.2 12.1 108 5-119 120-231 (249)
212 TIGR02633 xylG D-xylose ABC tr 99.8 4.8E-20 1E-24 200.5 13.8 109 4-118 380-489 (500)
213 PRK14262 phosphate ABC transpo 99.8 4.1E-20 8.8E-25 183.1 11.9 108 5-119 121-232 (250)
214 PRK14240 phosphate transporter 99.8 5E-20 1.1E-24 182.5 12.5 109 4-119 120-232 (250)
215 COG4559 ABC-type hemin transpo 99.8 4.2E-20 9.2E-25 171.9 11.1 112 2-119 111-228 (259)
216 cd03252 ABCC_Hemolysin The ABC 99.8 3.3E-20 7.2E-25 182.2 10.9 88 29-119 136-223 (237)
217 TIGR01257 rim_protein retinal- 99.8 2.9E-20 6.3E-25 223.5 12.5 115 4-124 2048-2162(2272)
218 PRK14275 phosphate ABC transpo 99.8 4.6E-20 1E-24 186.3 12.2 108 5-119 157-268 (286)
219 COG4987 CydC ABC-type transpor 99.8 3.7E-20 8E-25 192.9 11.6 113 4-120 441-560 (573)
220 PRK14237 phosphate transporter 99.8 5.9E-20 1.3E-24 183.8 12.8 113 4-119 137-249 (267)
221 COG4608 AppF ABC-type oligopep 99.8 3.5E-20 7.7E-25 180.2 10.7 112 2-119 84-197 (268)
222 cd03245 ABCC_bacteriocin_expor 99.8 5.8E-20 1.3E-24 178.4 12.3 107 5-114 108-220 (220)
223 PRK14249 phosphate ABC transpo 99.8 5.5E-20 1.2E-24 182.3 12.4 108 5-119 122-233 (251)
224 PRK14236 phosphate transporter 99.8 5.9E-20 1.3E-24 184.3 12.7 108 5-119 143-254 (272)
225 PRK14272 phosphate ABC transpo 99.8 6.2E-20 1.3E-24 182.0 12.4 108 5-119 123-234 (252)
226 PRK14259 phosphate ABC transpo 99.8 6E-20 1.3E-24 184.0 12.3 108 5-119 129-251 (269)
227 PRK11288 araG L-arabinose tran 99.8 7.6E-20 1.6E-24 198.9 13.9 107 4-116 118-224 (501)
228 PRK14251 phosphate ABC transpo 99.8 6.1E-20 1.3E-24 182.0 11.9 108 5-119 122-233 (251)
229 COG4148 ModC ABC-type molybdat 99.8 2.2E-20 4.8E-25 180.1 8.3 110 4-119 106-216 (352)
230 cd03270 ABC_UvrA_I The excisio 99.8 1.3E-19 2.8E-24 176.9 13.7 100 8-114 118-226 (226)
231 PRK14260 phosphate ABC transpo 99.8 7.3E-20 1.6E-24 182.3 12.1 108 5-119 125-241 (259)
232 PRK14265 phosphate ABC transpo 99.8 8.8E-20 1.9E-24 183.2 12.5 108 5-119 136-256 (274)
233 COG4604 CeuD ABC-type enteroch 99.8 2.8E-20 6.1E-25 171.2 7.9 113 2-120 111-224 (252)
234 PRK14243 phosphate transporter 99.8 8.5E-20 1.8E-24 182.4 12.1 108 5-119 126-246 (264)
235 PRK14255 phosphate ABC transpo 99.8 9.2E-20 2E-24 180.8 12.2 108 5-119 123-234 (252)
236 PRK14261 phosphate ABC transpo 99.8 8.7E-20 1.9E-24 181.1 11.9 108 5-119 124-235 (253)
237 PRK14257 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 186.8 12.8 111 6-119 201-311 (329)
238 KOG0055 Multidrug/pheromone ex 99.8 5E-19 1.1E-23 200.5 19.0 102 15-120 474-575 (1228)
239 cd03237 ABC_RNaseL_inhibitor_d 99.8 1.6E-19 3.6E-24 178.3 13.3 101 5-111 94-195 (246)
240 PRK10982 galactose/methyl gala 99.8 1.2E-19 2.6E-24 197.0 13.4 108 4-117 368-476 (491)
241 PRK14263 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 180.4 12.9 113 4-119 123-243 (261)
242 PRK14254 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 183.6 12.1 109 4-119 154-267 (285)
243 PRK14271 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 182.2 12.5 112 5-119 138-249 (276)
244 cd03251 ABCC_MsbA MsbA is an e 99.8 8.4E-20 1.8E-24 179.0 10.9 103 9-119 119-223 (234)
245 PRK14246 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 180.0 12.6 109 4-119 127-239 (257)
246 PRK14266 phosphate ABC transpo 99.8 1.4E-19 3.1E-24 179.2 12.1 112 5-119 121-232 (250)
247 PRK14238 phosphate transporter 99.8 1.3E-19 2.9E-24 181.6 11.8 107 6-119 143-253 (271)
248 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.6E-19 3.4E-24 173.0 11.7 87 30-117 103-190 (200)
249 TIGR02982 heterocyst_DevA ABC 99.8 1.7E-19 3.6E-24 175.4 12.0 100 4-110 119-219 (220)
250 PRK11174 cysteine/glutathione 99.8 1.3E-19 2.9E-24 200.8 12.3 112 4-119 452-570 (588)
251 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 1.7E-19 3.8E-24 177.2 11.4 88 29-119 137-224 (238)
252 COG4586 ABC-type uncharacteriz 99.8 1.4E-19 3E-24 174.3 10.4 114 4-123 134-248 (325)
253 COG1119 ModF ABC-type molybden 99.8 1.8E-19 3.9E-24 172.0 11.0 108 2-115 147-256 (257)
254 cd03271 ABC_UvrA_II The excisi 99.8 4.2E-19 9.1E-24 175.9 14.0 105 5-116 147-261 (261)
255 PRK14264 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 183.0 12.1 113 4-119 174-287 (305)
256 COG4181 Predicted ABC-type tra 99.8 2E-19 4.3E-24 162.0 10.3 102 4-112 124-226 (228)
257 cd03232 ABC_PDR_domain2 The pl 99.8 2.6E-19 5.7E-24 170.3 11.7 84 31-114 108-192 (192)
258 cd03213 ABCG_EPDR ABCG transpo 99.8 3E-19 6.6E-24 170.2 12.1 84 31-114 111-194 (194)
259 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.3E-19 5.1E-24 179.8 11.7 114 4-120 105-224 (275)
260 cd03238 ABC_UvrA The excision 99.8 4.9E-19 1.1E-23 165.7 12.9 99 9-114 69-170 (176)
261 TIGR03608 L_ocin_972_ABC putat 99.8 2.8E-19 6.2E-24 171.7 11.6 95 4-105 112-206 (206)
262 PRK14252 phosphate ABC transpo 99.8 3.4E-19 7.4E-24 178.1 12.3 108 5-119 136-247 (265)
263 PRK10535 macrolide transporter 99.8 1.7E-18 3.7E-23 193.5 19.2 110 3-119 121-230 (648)
264 PRK15177 Vi polysaccharide exp 99.8 3.4E-19 7.3E-24 172.4 11.6 111 8-125 86-196 (213)
265 COG4988 CydD ABC-type transpor 99.8 2.9E-19 6.3E-24 188.9 11.9 112 4-119 424-541 (559)
266 cd03254 ABCC_Glucan_exporter_l 99.8 3E-19 6.5E-24 174.5 11.2 112 5-119 107-224 (229)
267 PRK11176 lipid transporter ATP 99.8 3.7E-19 8.1E-24 197.1 13.1 112 4-119 447-565 (582)
268 cd03253 ABCC_ATM1_transporter 99.8 2.8E-19 6.1E-24 175.5 10.8 88 29-119 135-222 (236)
269 cd03216 ABC_Carb_Monos_I This 99.8 4.3E-19 9.3E-24 164.5 11.3 80 32-112 83-162 (163)
270 cd03236 ABC_RNaseL_inhibitor_d 99.8 4.8E-19 1E-23 175.8 12.3 104 4-114 117-220 (255)
271 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.7E-19 8.1E-24 200.6 12.6 110 4-119 555-671 (686)
272 PRK10938 putative molybdenum t 99.8 4.7E-19 1E-23 192.3 12.5 106 4-115 378-486 (490)
273 cd03233 ABC_PDR_domain1 The pl 99.8 6.8E-19 1.5E-23 168.9 12.0 87 28-114 115-202 (202)
274 PRK10790 putative multidrug tr 99.8 5.2E-19 1.1E-23 196.3 12.7 112 4-119 443-561 (592)
275 PRK13538 cytochrome c biogenes 99.8 7E-19 1.5E-23 169.0 11.6 96 4-105 107-202 (204)
276 cd03244 ABCC_MRP_domain2 Domai 99.8 9E-19 2E-23 170.2 12.4 109 5-116 107-221 (221)
277 COG0410 LivF ABC-type branched 99.8 5.9E-19 1.3E-23 167.2 10.6 108 7-120 116-225 (237)
278 PRK11160 cysteine/glutathione 99.8 7.6E-19 1.6E-23 194.1 12.8 113 3-119 442-560 (574)
279 cd03231 ABC_CcmA_heme_exporter 99.8 9.7E-19 2.1E-23 167.7 11.9 96 4-105 103-198 (201)
280 COG1132 MdlB ABC-type multidru 99.8 6.6E-19 1.4E-23 194.5 12.3 112 5-120 433-551 (567)
281 COG2274 SunT ABC-type bacterio 99.8 5.2E-19 1.1E-23 196.5 11.4 98 19-120 598-695 (709)
282 PRK10247 putative ABC transpor 99.8 1E-18 2.2E-23 170.4 11.9 105 4-115 114-221 (225)
283 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 7.5E-19 1.6E-23 199.0 12.6 111 4-120 582-699 (710)
284 PRK13543 cytochrome c biogenes 99.8 1.2E-18 2.5E-23 168.7 12.1 97 5-107 116-212 (214)
285 cd03248 ABCC_TAP TAP, the Tran 99.8 8.1E-19 1.7E-23 171.2 10.9 96 7-110 129-226 (226)
286 cd03215 ABC_Carb_Monos_II This 99.8 8.3E-19 1.8E-23 165.5 10.0 78 32-110 105-182 (182)
287 cd03230 ABC_DR_subfamily_A Thi 99.8 1E-18 2.2E-23 163.6 10.5 78 32-110 96-173 (173)
288 TIGR03375 type_I_sec_LssB type 99.8 1.1E-18 2.3E-23 197.2 12.5 113 4-120 568-687 (694)
289 TIGR01842 type_I_sec_PrtD type 99.8 1.1E-18 2.3E-23 191.8 12.1 112 5-119 422-540 (544)
290 cd03288 ABCC_SUR2 The SUR doma 99.8 1.3E-18 2.7E-23 173.3 11.4 111 6-119 125-241 (257)
291 TIGR02203 MsbA_lipidA lipid A 99.8 1.2E-18 2.6E-23 192.5 12.3 112 4-119 436-554 (571)
292 TIGR02324 CP_lyasePhnL phospho 99.8 1.7E-18 3.6E-23 168.7 11.6 97 4-106 126-223 (224)
293 cd03246 ABCC_Protease_Secretio 99.8 1.3E-18 2.8E-23 162.8 10.4 77 32-110 97-173 (173)
294 TIGR01193 bacteriocin_ABC ABC- 99.8 1.4E-18 3E-23 196.7 12.6 111 4-119 578-695 (708)
295 PRK13409 putative ATPase RIL; 99.8 2.1E-18 4.5E-23 190.0 12.9 106 5-117 432-538 (590)
296 TIGR01846 type_I_sec_HlyB type 99.8 1.9E-18 4.1E-23 195.1 12.9 112 4-119 560-678 (694)
297 PRK13657 cyclic beta-1,2-gluca 99.8 2.3E-18 4.9E-23 191.0 12.8 112 4-119 438-556 (588)
298 cd03369 ABCC_NFT1 Domain 2 of 99.8 3.9E-18 8.4E-23 164.1 12.7 85 29-116 123-207 (207)
299 TIGR01166 cbiO cobalt transpor 99.8 2.2E-18 4.7E-23 163.6 10.7 84 4-92 105-188 (190)
300 cd03247 ABCC_cytochrome_bd The 99.8 2.5E-18 5.4E-23 161.6 10.9 83 29-114 96-178 (178)
301 PRK15064 ABC transporter ATP-b 99.8 2.1E-18 4.5E-23 189.0 11.9 107 4-119 132-240 (530)
302 TIGR01192 chvA glucan exporter 99.8 2.7E-18 5.8E-23 190.1 12.8 111 5-119 439-556 (585)
303 PRK15064 ABC transporter ATP-b 99.8 1.9E-18 4E-23 189.3 11.3 107 4-119 415-523 (530)
304 PRK10789 putative multidrug tr 99.8 2.9E-18 6.3E-23 189.3 12.7 112 4-119 418-536 (569)
305 cd03229 ABC_Class3 This class 99.8 2.6E-18 5.6E-23 161.5 10.5 77 32-109 101-178 (178)
306 PRK13539 cytochrome c biogenes 99.8 3.3E-18 7.2E-23 164.7 11.4 96 4-107 105-200 (207)
307 KOG0057 Mitochondrial Fe/S clu 99.8 2.6E-18 5.6E-23 179.4 11.1 113 5-121 455-574 (591)
308 TIGR00958 3a01208 Conjugate Tr 99.8 2.7E-18 5.8E-23 194.1 11.9 111 4-120 584-701 (711)
309 cd03222 ABC_RNaseL_inhibitor T 99.8 4.6E-18 9.9E-23 159.3 11.3 87 32-119 72-161 (177)
310 KOG0058 Peptide exporter, ABC 99.7 2.4E-18 5.3E-23 185.3 10.1 101 15-119 589-689 (716)
311 TIGR01189 ccmA heme ABC export 99.7 6.5E-18 1.4E-22 161.5 11.2 92 5-104 106-197 (198)
312 TIGR02204 MsbA_rel ABC transpo 99.7 5.9E-18 1.3E-22 187.3 12.4 112 4-119 443-561 (576)
313 COG4525 TauB ABC-type taurine 99.7 1.2E-17 2.5E-22 153.7 11.9 115 2-122 108-225 (259)
314 PRK11819 putative ABC transpor 99.7 5.7E-18 1.2E-22 186.4 11.5 105 4-118 142-247 (556)
315 COG4674 Uncharacterized ABC-ty 99.7 3.9E-18 8.5E-23 156.8 8.2 111 2-119 123-233 (249)
316 PRK10636 putative ABC transpor 99.7 6.2E-18 1.3E-22 188.5 11.3 107 4-119 407-515 (638)
317 cd03291 ABCC_CFTR1 The CFTR su 99.7 1.5E-17 3.3E-22 167.3 12.7 109 7-119 129-245 (282)
318 PRK13409 putative ATPase RIL; 99.7 1.1E-17 2.3E-22 184.5 12.5 98 4-108 190-287 (590)
319 cd03250 ABCC_MRP_domain1 Domai 99.7 1.5E-17 3.2E-22 159.8 11.9 80 28-109 124-204 (204)
320 KOG0055 Multidrug/pheromone ex 99.7 4.6E-18 9.9E-23 192.8 9.5 102 15-120 1111-1212(1228)
321 COG4107 PhnK ABC-type phosphon 99.7 2.1E-17 4.6E-22 149.3 11.5 112 3-119 127-239 (258)
322 PTZ00265 multidrug resistance 99.7 9.3E-18 2E-22 201.0 12.1 113 4-119 1325-1450(1466)
323 COG0396 sufC Cysteine desulfur 99.7 2.1E-17 4.6E-22 156.1 11.9 120 4-130 120-242 (251)
324 PRK10522 multidrug transporter 99.7 2.7E-17 5.9E-22 180.8 14.6 108 4-113 422-530 (547)
325 PRK10636 putative ABC transpor 99.7 1.4E-17 3.1E-22 185.6 12.4 105 4-117 126-232 (638)
326 cd03290 ABCC_SUR1_N The SUR do 99.7 1.9E-17 4.2E-22 160.6 11.8 101 6-109 109-218 (218)
327 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.6E-17 5.6E-22 181.2 14.2 108 4-113 442-551 (555)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.2E-17 2.6E-22 183.7 11.6 105 5-119 141-246 (552)
329 cd03228 ABCC_MRP_Like The MRP 99.7 1.4E-17 3.1E-22 155.4 10.0 75 32-109 97-171 (171)
330 COG1129 MglA ABC-type sugar tr 99.7 3.3E-17 7.1E-22 172.9 13.4 109 4-118 123-232 (500)
331 PLN03073 ABC transporter F fam 99.7 2.1E-17 4.5E-22 185.5 12.1 107 4-119 604-712 (718)
332 PRK11147 ABC transporter ATPas 99.7 1.8E-17 3.9E-22 185.0 11.6 104 4-118 136-240 (635)
333 KOG0059 Lipid exporter ABCA1 a 99.7 1.1E-17 2.4E-22 192.3 9.9 117 2-124 674-790 (885)
334 PRK00349 uvrA excinuclease ABC 99.7 1.7E-17 3.8E-22 189.1 11.4 108 4-119 467-583 (943)
335 PRK13540 cytochrome c biogenes 99.7 2.7E-17 5.8E-22 157.5 10.5 92 5-103 106-197 (200)
336 COG4618 ArpD ABC-type protease 99.7 2.4E-17 5.2E-22 170.7 9.9 112 7-123 451-562 (580)
337 PTZ00265 multidrug resistance 99.7 3.4E-17 7.5E-22 196.2 12.5 102 5-109 547-656 (1466)
338 PLN03073 ABC transporter F fam 99.7 3.9E-17 8.5E-22 183.2 12.2 106 4-118 321-428 (718)
339 PLN03232 ABC transporter C fam 99.7 4.4E-17 9.4E-22 196.6 12.8 113 4-120 1338-1457(1495)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 5.1E-17 1.1E-21 147.5 10.0 75 31-109 70-144 (144)
341 TIGR00630 uvra excinuclease AB 99.7 4.5E-17 9.7E-22 185.4 11.8 103 10-119 470-581 (924)
342 PRK13541 cytochrome c biogenes 99.7 5.5E-17 1.2E-21 154.7 10.3 93 4-103 101-193 (195)
343 cd03223 ABCD_peroxisomal_ALDP 99.7 6.5E-17 1.4E-21 150.3 10.5 75 29-108 89-163 (166)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 5.2E-17 1.1E-21 178.7 11.6 103 5-116 421-526 (552)
345 PLN03130 ABC transporter C fam 99.7 7.4E-17 1.6E-21 195.0 13.0 113 4-120 1341-1460(1622)
346 PRK11819 putative ABC transpor 99.7 7.8E-17 1.7E-21 177.4 12.0 103 5-116 423-528 (556)
347 PLN03232 ABC transporter C fam 99.7 7.1E-17 1.5E-21 194.8 12.1 113 4-120 707-827 (1495)
348 TIGR00957 MRP_assoc_pro multi 99.7 1.1E-16 2.5E-21 193.3 13.0 113 4-120 1388-1507(1522)
349 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.7E-16 3.6E-21 146.0 10.6 77 32-109 81-157 (157)
350 COG5265 ATM1 ABC-type transpor 99.7 7.8E-17 1.7E-21 163.5 8.6 101 16-120 385-485 (497)
351 COG1129 MglA ABC-type sugar tr 99.7 2.2E-16 4.8E-21 166.6 12.2 109 4-118 378-487 (500)
352 PTZ00243 ABC transporter; Prov 99.7 1.8E-16 4E-21 191.3 12.7 113 4-120 1412-1532(1560)
353 PLN03130 ABC transporter C fam 99.7 1.8E-16 4E-21 191.7 12.5 113 4-120 707-827 (1622)
354 TIGR01271 CFTR_protein cystic 99.7 2.4E-16 5.3E-21 190.0 12.5 114 3-120 1319-1439(1490)
355 PRK00349 uvrA excinuclease ABC 99.7 3.2E-16 6.9E-21 178.8 12.8 107 6-119 809-925 (943)
356 TIGR02857 CydD thiol reductant 99.7 2.4E-16 5.3E-21 172.7 11.2 98 4-105 425-529 (529)
357 PRK11147 ABC transporter ATPas 99.7 3.8E-16 8.2E-21 174.4 12.1 103 4-115 417-522 (635)
358 PRK00635 excinuclease ABC subu 99.6 4.9E-16 1.1E-20 184.6 12.8 108 5-120 788-905 (1809)
359 COG3845 ABC-type uncharacteriz 99.6 7.5E-16 1.6E-20 159.8 12.5 108 2-115 116-223 (501)
360 COG1101 PhnK ABC-type uncharac 99.6 5.7E-16 1.2E-20 144.8 10.4 103 6-114 126-231 (263)
361 TIGR00630 uvra excinuclease AB 99.6 9E-16 1.9E-20 174.9 13.1 107 6-119 807-923 (924)
362 PRK00635 excinuclease ABC subu 99.6 6.9E-16 1.5E-20 183.3 12.2 103 10-119 459-570 (1809)
363 TIGR00954 3a01203 Peroxysomal 99.6 8.9E-16 1.9E-20 171.9 12.5 99 4-107 551-653 (659)
364 cd03279 ABC_sbcCD SbcCD and ot 99.6 8.5E-16 1.8E-20 148.7 10.8 93 11-109 108-210 (213)
365 KOG0056 Heavy metal exporter H 99.6 3.6E-16 7.7E-21 160.6 7.8 103 13-119 657-759 (790)
366 cd03278 ABC_SMC_barmotin Barmo 99.6 1.7E-15 3.8E-20 144.6 10.5 93 4-107 94-190 (197)
367 TIGR02868 CydC thiol reductant 99.6 1.4E-15 3E-20 166.8 10.5 86 4-91 437-529 (529)
368 COG0488 Uup ATPase components 99.6 2E-15 4.4E-20 162.9 11.1 103 4-116 132-235 (530)
369 cd03273 ABC_SMC2_euk Eukaryoti 99.6 4.6E-15 1E-19 147.1 12.2 95 4-106 124-242 (251)
370 TIGR01271 CFTR_protein cystic 99.6 2.2E-15 4.8E-20 181.7 11.8 96 21-120 539-635 (1490)
371 cd03276 ABC_SMC6_euk Eukaryoti 99.6 3E-15 6.5E-20 143.1 9.9 96 4-109 90-192 (198)
372 TIGR00957 MRP_assoc_pro multi 99.6 2.8E-15 6.1E-20 181.3 12.1 97 21-120 751-849 (1522)
373 PTZ00243 ABC transporter; Prov 99.6 3.1E-15 6.7E-20 180.8 12.1 95 22-119 774-868 (1560)
374 COG4619 ABC-type uncharacteriz 99.6 5.3E-15 1.1E-19 133.2 9.8 101 4-110 110-212 (223)
375 COG1134 TagH ABC-type polysacc 99.6 6.3E-15 1.4E-19 141.1 10.6 118 2-125 123-240 (249)
376 cd03275 ABC_SMC1_euk Eukaryoti 99.6 1E-14 2.2E-19 144.3 11.9 102 4-107 111-233 (247)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.6 7.4E-15 1.6E-19 144.8 10.7 76 28-106 155-234 (243)
378 COG4167 SapF ABC-type antimicr 99.6 1.7E-14 3.7E-19 131.6 10.6 112 2-119 124-237 (267)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.6 6.1E-15 1.3E-19 142.5 7.9 92 8-107 109-204 (212)
380 TIGR01247 drrB daunorubicin re 99.5 2.7E-12 5.8E-17 126.0 24.2 193 230-426 1-203 (236)
381 cd03240 ABC_Rad50 The catalyti 99.5 4.2E-14 9E-19 135.9 9.8 78 28-107 112-197 (204)
382 COG4138 BtuD ABC-type cobalami 99.5 6.7E-15 1.4E-19 133.4 1.9 112 3-120 102-220 (248)
383 COG4170 SapD ABC-type antimicr 99.5 2.5E-14 5.4E-19 133.1 5.1 115 3-120 132-247 (330)
384 COG4778 PhnL ABC-type phosphon 99.5 7.3E-14 1.6E-18 126.1 7.5 100 3-107 128-227 (235)
385 KOG0054 Multidrug resistance-a 99.5 1E-13 2.2E-18 161.1 10.9 114 4-120 610-730 (1381)
386 COG4133 CcmA ABC-type transpor 99.5 1.4E-13 3E-18 126.6 9.2 85 4-93 108-192 (209)
387 cd03239 ABC_SMC_head The struc 99.5 3E-13 6.6E-18 127.1 10.2 76 30-107 93-172 (178)
388 cd03277 ABC_SMC5_euk Eukaryoti 99.4 3.1E-13 6.6E-18 130.7 8.4 82 28-110 123-212 (213)
389 TIGR00025 Mtu_efflux ABC trans 99.4 6E-11 1.3E-15 116.2 24.6 186 236-426 2-195 (232)
390 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 5.5E-12 1.2E-16 121.3 16.8 146 312-517 58-204 (208)
391 COG3845 ABC-type uncharacteriz 99.4 4.9E-13 1.1E-17 139.0 9.9 111 3-119 379-490 (501)
392 COG1245 Predicted ATPase, RNas 99.4 5.1E-13 1.1E-17 137.0 9.6 97 5-107 192-288 (591)
393 TIGR01291 nodJ ABC-2 type tran 99.4 1.9E-10 4.1E-15 114.3 26.1 196 224-427 7-216 (253)
394 KOG0927 Predicted transporter 99.4 8.3E-13 1.8E-17 138.1 9.3 107 4-118 198-306 (614)
395 COG0488 Uup ATPase components 99.4 1.3E-12 2.9E-17 141.2 10.3 103 4-116 416-520 (530)
396 KOG0054 Multidrug resistance-a 99.4 2.4E-12 5.3E-17 149.8 11.9 113 4-120 1242-1361(1381)
397 cd03241 ABC_RecN RecN ATPase i 99.3 2.3E-12 5E-17 129.6 9.0 76 31-109 170-249 (276)
398 cd03280 ABC_MutS2 MutS2 homolo 99.3 7.1E-13 1.5E-17 127.0 4.7 82 30-114 90-172 (200)
399 cd03227 ABC_Class2 ABC-type Cl 99.3 4.2E-12 9.2E-17 117.5 9.2 75 31-107 77-155 (162)
400 COG0178 UvrA Excinuclease ATPa 99.3 6.9E-12 1.5E-16 136.7 11.5 109 6-120 801-918 (935)
401 TIGR00634 recN DNA repair prot 99.3 3.7E-12 8E-17 140.4 9.4 77 30-109 439-519 (563)
402 PRK10869 recombination and rep 99.3 7.4E-12 1.6E-16 137.1 10.1 77 30-109 429-509 (553)
403 COG1245 Predicted ATPase, RNas 99.3 9.2E-12 2E-16 127.9 9.5 94 7-106 436-530 (591)
404 COG4136 ABC-type uncharacteriz 99.3 9.1E-12 2E-16 110.5 8.0 87 2-93 110-197 (213)
405 TIGR03861 phenyl_ABC_PedC alco 99.3 3.5E-09 7.7E-14 105.1 26.8 200 221-425 1-218 (253)
406 TIGR00618 sbcc exonuclease Sbc 99.3 1.9E-11 4.2E-16 143.9 11.1 80 28-108 947-1036(1042)
407 PHA02562 46 endonuclease subun 99.2 1.3E-11 2.8E-16 136.4 8.8 78 29-110 466-555 (562)
408 COG4178 ABC-type uncharacteriz 99.2 2.6E-11 5.6E-16 131.0 8.4 101 4-107 487-588 (604)
409 KOG0062 ATPase component of AB 99.2 5.3E-11 1.1E-15 124.1 10.0 100 4-112 459-559 (582)
410 PRK15066 inner membrane transp 99.2 1.9E-08 4.1E-13 100.1 28.1 204 221-425 7-216 (257)
411 KOG0062 ATPase component of AB 99.2 1.7E-11 3.8E-16 127.6 5.0 104 4-116 175-280 (582)
412 KOG0927 Predicted transporter 99.2 3.2E-11 7E-16 126.4 6.9 104 3-115 485-590 (614)
413 PF00005 ABC_tran: ABC transpo 99.1 9.4E-11 2E-15 104.8 6.9 57 3-60 81-137 (137)
414 COG0178 UvrA Excinuclease ATPa 99.1 3.9E-10 8.4E-15 123.3 10.6 103 11-120 465-576 (935)
415 cd03285 ABC_MSH2_euk MutS2 hom 99.1 1.1E-10 2.5E-15 113.5 5.4 83 30-116 88-176 (222)
416 PRK03918 chromosome segregatio 99.1 3.6E-10 7.8E-15 131.4 9.5 78 28-107 785-868 (880)
417 PRK10246 exonuclease subunit S 99.0 8.3E-10 1.8E-14 129.7 10.6 79 28-107 946-1032(1047)
418 cd03242 ABC_RecF RecF is a rec 99.0 6E-10 1.3E-14 111.7 7.4 76 30-110 182-269 (270)
419 COG4615 PvdE ABC-type sideroph 99.0 8.6E-10 1.9E-14 111.8 7.3 110 4-115 421-531 (546)
420 KOG0066 eIF2-interacting prote 99.0 9.8E-10 2.1E-14 112.3 7.4 94 6-107 683-776 (807)
421 PRK01156 chromosome segregatio 98.9 2.5E-09 5.5E-14 124.5 10.4 77 28-106 798-883 (895)
422 COG0842 ABC-type multidrug tra 98.9 2.1E-07 4.6E-12 92.4 22.2 152 314-522 131-285 (286)
423 TIGR00606 rad50 rad50. This fa 98.9 3.3E-09 7.1E-14 127.7 8.5 69 30-99 1198-1277(1311)
424 KOG2355 Predicted ABC-type tra 98.9 7.2E-09 1.6E-13 96.8 8.1 109 5-121 128-237 (291)
425 cd03243 ABC_MutS_homologs The 98.8 7.7E-09 1.7E-13 99.2 8.2 85 32-119 92-177 (202)
426 TIGR02168 SMC_prok_B chromosom 98.8 4.2E-09 9.1E-14 125.8 7.6 76 28-106 1086-1165(1179)
427 PRK00064 recF recombination pr 98.8 9.7E-09 2.1E-13 107.2 8.5 78 29-110 271-359 (361)
428 smart00534 MUTSac ATPase domai 98.8 3.9E-09 8.5E-14 99.8 4.2 80 31-113 61-142 (185)
429 PRK02224 chromosome segregatio 98.8 1.6E-08 3.4E-13 117.7 9.1 78 29-108 779-869 (880)
430 TIGR02169 SMC_prok_A chromosom 98.7 1.4E-08 3.1E-13 121.4 8.0 76 29-107 1072-1151(1164)
431 KOG0066 eIF2-interacting prote 98.7 4.4E-09 9.6E-14 107.6 2.2 103 4-115 389-493 (807)
432 KOG0060 Long-chain acyl-CoA tr 98.7 6.2E-08 1.3E-12 102.8 10.0 104 3-111 536-646 (659)
433 TIGR01248 drrC daunorubicin re 98.7 3.3E-07 7.2E-12 83.9 13.4 127 296-425 15-146 (152)
434 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.8E-07 3.9E-12 90.7 10.5 88 5-106 121-212 (220)
435 PRK14079 recF recombination pr 98.6 1.1E-07 2.5E-12 98.8 8.2 78 30-115 262-348 (349)
436 PF06422 PDR_CDR: CDR ABC tran 98.6 5E-08 1.1E-12 83.1 4.2 60 458-523 17-77 (103)
437 KOG0063 RNAse L inhibitor, ABC 98.6 1E-07 2.2E-12 97.8 7.0 97 5-107 192-288 (592)
438 COG2401 ABC-type ATPase fused 98.6 1.8E-07 4E-12 95.7 8.8 101 7-111 486-588 (593)
439 TIGR00611 recf recF protein. A 98.5 1.2E-07 2.7E-12 98.9 7.2 60 30-92 274-342 (365)
440 COG0419 SbcC ATPase involved i 98.5 4.4E-07 9.4E-12 105.9 10.3 79 28-108 812-898 (908)
441 cd03282 ABC_MSH4_euk MutS4 hom 98.5 2.4E-07 5.1E-12 89.0 6.4 61 31-92 91-152 (204)
442 cd01124 KaiC KaiC is a circadi 98.4 9E-07 2E-11 83.2 9.3 80 28-107 68-164 (187)
443 cd03283 ABC_MutS-like MutS-lik 98.4 9.5E-07 2.1E-11 84.6 9.4 71 34-105 88-163 (199)
444 KOG0063 RNAse L inhibitor, ABC 98.4 3.7E-07 8E-12 93.8 4.9 94 6-105 436-530 (592)
445 PF13304 AAA_21: AAA domain; P 98.3 1.6E-06 3.5E-11 84.0 8.5 63 30-92 235-300 (303)
446 cd03284 ABC_MutS1 MutS1 homolo 98.3 1.2E-06 2.6E-11 84.9 6.5 86 31-120 85-180 (216)
447 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.7E-11 105.5 7.5 59 29-90 1245-1315(1353)
448 PRK00409 recombination and DNA 98.2 8.3E-07 1.8E-11 101.1 4.1 82 29-113 388-470 (782)
449 TIGR03518 ABC_perm_GldF glidin 98.2 0.00083 1.8E-08 66.2 24.5 187 225-422 2-208 (240)
450 COG1682 TagG ABC-type polysacc 98.2 0.00096 2.1E-08 66.5 24.4 205 220-430 16-225 (263)
451 KOG0064 Peroxisomal long-chain 98.1 1.9E-06 4E-11 90.8 4.6 94 5-103 582-679 (728)
452 cd03281 ABC_MSH5_euk MutS5 hom 98.1 4.9E-06 1.1E-10 80.5 7.1 62 31-92 88-155 (213)
453 PF13558 SbcCD_C: Putative exo 98.1 1E-05 2.2E-10 67.2 6.5 47 30-76 31-90 (90)
454 PF12679 ABC2_membrane_2: ABC- 98.0 0.0021 4.6E-08 64.0 23.7 91 301-391 89-199 (277)
455 PRK13695 putative NTPase; Prov 98.0 1.2E-05 2.6E-10 75.1 6.3 79 31-113 78-156 (174)
456 TIGR01069 mutS2 MutS2 family p 98.0 7.9E-06 1.7E-10 93.0 6.0 64 29-93 383-447 (771)
457 TIGR02858 spore_III_AA stage I 97.9 4.5E-05 9.7E-10 76.3 8.4 70 41-119 186-267 (270)
458 PTZ00132 GTP-binding nuclear p 97.9 1.9E-05 4E-10 76.3 5.4 46 34-79 155-205 (215)
459 PRK15176 Vi polysaccharide exp 97.8 0.015 3.3E-07 58.1 25.7 72 358-429 157-228 (264)
460 PRK13830 conjugal transfer pro 97.7 5.6E-05 1.2E-09 87.1 7.3 69 46-115 649-727 (818)
461 PF12698 ABC2_membrane_3: ABC- 97.6 1.2E-05 2.5E-10 81.8 0.0 127 295-425 182-314 (344)
462 PRK08533 flagellar accessory p 97.5 0.00028 6E-09 69.2 7.5 75 32-106 96-184 (230)
463 cd03286 ABC_MSH6_euk MutS6 hom 97.5 0.00022 4.7E-09 69.3 6.7 58 35-92 95-154 (218)
464 cd01125 repA Hexameric Replica 97.4 0.00029 6.4E-09 69.3 6.8 82 3-92 56-160 (239)
465 cd01128 rho_factor Transcripti 97.4 8.3E-05 1.8E-09 73.6 2.3 76 29-110 127-211 (249)
466 PRK06067 flagellar accessory p 97.3 0.00091 2E-08 65.5 9.2 76 32-107 101-187 (234)
467 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00069 1.5E-08 65.9 7.3 59 34-92 95-155 (222)
468 PF03379 CcmB: CcmB protein; 97.2 0.02 4.4E-07 55.4 17.2 143 224-378 1-153 (215)
469 COG3910 Predicted ATPase [Gene 97.2 0.00093 2E-08 62.3 7.0 63 29-92 127-189 (233)
470 cd01120 RecA-like_NTPases RecA 97.2 0.0011 2.4E-08 60.0 7.4 63 32-94 68-140 (165)
471 PF13175 AAA_15: AAA ATPase do 97.0 0.0015 3.2E-08 69.1 7.6 63 30-92 340-413 (415)
472 PRK13891 conjugal transfer pro 97.0 0.0011 2.4E-08 76.8 6.7 69 42-111 680-751 (852)
473 COG0497 RecN ATPase involved i 96.7 0.0057 1.2E-07 66.3 8.4 76 29-107 429-508 (557)
474 COG4637 Predicted ATPase [Gene 96.5 0.009 2E-07 60.0 7.9 62 30-92 269-332 (373)
475 TIGR03185 DNA_S_dndD DNA sulfu 96.5 0.0043 9.4E-08 70.0 6.5 59 29-91 549-614 (650)
476 COG1277 NosY ABC-type transpor 96.5 0.61 1.3E-05 46.5 21.4 199 223-425 3-228 (278)
477 TIGR02655 circ_KaiC circadian 96.3 0.00056 1.2E-08 74.4 -2.0 66 31-106 115-190 (484)
478 PF08370 PDR_assoc: Plant PDR 96.3 0.0089 1.9E-07 46.1 5.0 43 478-520 11-55 (65)
479 PRK07721 fliI flagellum-specif 96.1 0.011 2.5E-07 63.1 6.7 85 31-118 223-340 (438)
480 KOG0964 Structural maintenance 96.1 0.0043 9.2E-08 69.7 3.3 71 30-103 1096-1170(1200)
481 PRK13873 conjugal transfer ATP 96.0 0.013 2.8E-07 67.9 7.4 47 46-92 632-679 (811)
482 COG1511 Predicted membrane pro 96.0 0.12 2.6E-06 59.6 14.7 114 306-422 610-725 (780)
483 COG1196 Smc Chromosome segrega 95.9 0.01 2.2E-07 71.5 6.0 71 30-103 1065-1139(1163)
484 TIGR02788 VirB11 P-type DNA tr 95.9 0.0051 1.1E-07 63.0 3.0 71 40-119 209-279 (308)
485 PF12051 DUF3533: Protein of u 95.9 0.34 7.3E-06 51.2 16.7 112 312-429 240-359 (382)
486 PF13166 AAA_13: AAA domain 95.8 0.029 6.3E-07 64.1 8.9 88 5-92 462-572 (712)
487 TIGR01190 ccmB heme exporter p 95.7 0.63 1.4E-05 44.8 16.2 136 228-376 2-148 (211)
488 KOG0962 DNA repair protein RAD 95.4 0.026 5.6E-07 66.2 6.2 60 32-91 1184-1254(1294)
489 cd01131 PilT Pilus retraction 95.1 0.03 6.5E-07 53.4 4.9 57 41-106 66-122 (198)
490 TIGR00152 dephospho-CoA kinase 94.7 0.016 3.5E-07 54.7 1.7 73 34-108 60-133 (188)
491 PRK13898 type IV secretion sys 94.6 0.055 1.2E-06 62.7 6.3 49 45-93 638-687 (800)
492 PRK06793 fliI flagellum-specif 94.6 0.028 6.2E-07 59.8 3.5 80 29-115 219-305 (432)
493 COG4587 ABC-type uncharacteriz 94.3 2.2 4.9E-05 41.7 15.2 43 379-421 176-218 (268)
494 PRK05399 DNA mismatch repair p 94.2 0.16 3.5E-06 59.1 8.8 70 28-101 663-738 (854)
495 PRK14088 dnaA chromosomal repl 93.9 0.1 2.2E-06 56.2 6.0 71 48-118 193-265 (440)
496 COG4694 Uncharacterized protei 93.3 0.22 4.8E-06 53.5 7.0 69 31-100 529-605 (758)
497 cd00561 CobA_CobO_BtuR ATP:cor 92.8 0.26 5.7E-06 45.3 6.1 68 39-107 83-154 (159)
498 COG1195 RecF Recombinational D 92.7 0.22 4.8E-06 51.7 6.0 76 30-110 274-361 (363)
499 PRK08699 DNA polymerase III su 92.6 0.14 3E-06 52.9 4.4 39 53-92 116-154 (325)
500 TIGR03733 lanti_perm_MutG lant 92.5 12 0.00025 36.9 20.3 75 302-376 76-158 (248)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-87 Score=737.76 Aligned_cols=467 Identities=42% Similarity=0.736 Sum_probs=412.9
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+|+++|++++++|||++|+|+++|+...||+||||||||+||.+|++||+||||||||||||+.++.++++.||++|++|
T Consensus 141 ~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~g 220 (613)
T KOG0061|consen 141 EKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSG 220 (613)
T ss_pred HHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCC
Confidence 67889999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCCCCCchhhHHHH
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGSPGGTKSLVEFN 161 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (525)
+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|+|||++.||+||++|+++.. ++.+...+..
T Consensus 221 rtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~----~~~~~~~~~~ 296 (613)
T KOG0061|consen 221 RTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD----SGTRELEEAV 296 (613)
T ss_pred CEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC----CCchhHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999998754 2223344444
Q ss_pred HHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCC-CCCChhHHHHHHHHHHHHHHhhcChh
Q 037973 162 KTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVP-NFANPAWKEMVVLSQRSVTNSRRMPE 240 (525)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~~~L~~R~~~~~~R~~~ 240 (525)
+.|+........ +....... +........ ...+ ....+||.|+++|++|.+++.+|||.
T Consensus 297 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~ 356 (613)
T KOG0061|consen 297 RIAKLINKFSQT----DNLKKTLE-ALEKSLSTS---------------KKVEIGTSPSWWTQFKILLKRSLKNIRRDPS 356 (613)
T ss_pred HHHHHhhhcccc----chhhhhHH-HHhhhcccc---------------cccccccCCcHHHHHHHHHHHHhHHHhhcHH
Confidence 555443322110 00000000 111110000 0111 11679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHH-HHhhhHhhHHHHHHHHHHHhcCCCCChHHHHHH
Q 037973 241 LFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFY-TCADALPVFLQERYIFMRETAHNAYRRSSYVLS 319 (525)
Q Consensus 241 ~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~la 319 (525)
+...|+++.+.+|+++|++||++++++.++++|.|++|+.+.++.+ .++.+++.|++||++|.||+.+|+|+.++||+|
T Consensus 357 ~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la 436 (613)
T KOG0061|consen 357 LLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLA 436 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999998855 556789999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Q 037973 320 HTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSG 396 (525)
Q Consensus 320 ~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~G 396 (525)
++++++|+.++.+++|.+|+|||+|++++ |++|++++++..++++++++++++..||...|+++++++++.+++|+|
T Consensus 437 ~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G 516 (613)
T KOG0061|consen 437 KTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGG 516 (613)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhh
Confidence 99999999999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCccchhhhhhCcchHHHHHHHHHhhCC-CccccccccccccCCCCCCCchhHHHHHHHhhhccccccccccc
Q 037973 397 FFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGN-PVKCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNMRITTST 475 (525)
Q Consensus 397 f~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 475 (525)
|+++.++||.||+|++|+||++|++|++++|||.+ ...|... .+..
T Consensus 517 ~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~---------------------------------~~~~ 563 (613)
T KOG0061|consen 517 FFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS---------------------------------GNLC 563 (613)
T ss_pred hhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC---------------------------------cCCc
Confidence 99999999999999999999999999999999997 3366311 0145
Q ss_pred cccChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 037973 476 CLTTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKNKRR 525 (525)
Q Consensus 476 C~~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~~r~ 525 (525)
|..+|+++++.+++.+.+.|.|+.+++++.++||+++|++|+++.|++|+
T Consensus 564 ~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 564 CESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred ccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 78999999999999999999999999999999999999999999998875
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-85 Score=724.23 Aligned_cols=473 Identities=33% Similarity=0.572 Sum_probs=406.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEG-HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++++++++++.+||.+++|+.+|++. .++||||||||++||++|+++|++++|||||+|||+.++.++++.|++++++
T Consensus 136 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~ 215 (617)
T TIGR00955 136 EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215 (617)
T ss_pred HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC
Confidence 345689999999999999999999864 6899999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCCCCC-chhhHH
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGSPGG-TKSLVE 159 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (525)
|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++++........ .+...+
T Consensus 216 g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~ 295 (617)
T TIGR00955 216 GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEK 295 (617)
T ss_pred CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHH
Confidence 9999999999988899999999999999999999999999999999999999999999999998754332211 111222
Q ss_pred HHHHHHhhhhhhccccCCCcccccHHHHHHhhhhc-cccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC
Q 037973 160 FNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISR-GKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNSRRM 238 (525)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~R~ 238 (525)
+.+.|+.+..... ..+.......+ +... ..........+..+|++|+.+|++|++++.+||
T Consensus 296 ~~~~~~~s~~~~~-----------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 357 (617)
T TIGR00955 296 ICDSFAVSDIGRD-----------MLVNTNLWSGKAGGLV-------KDSENMEGIGYNASWWTQFYALLKRSWLSVLRD 357 (617)
T ss_pred HHHHHhcchhhHH-----------HHHHhhhhhccccccc-------cccccccccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3333332211110 11111100000 0000 000111223467899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHH-HhhhHhhHHHHHHHHHHHhcCCCCChHHHH
Q 037973 239 PELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFYT-CADALPVFLQERYIFMRETAHNAYRRSSYV 317 (525)
Q Consensus 239 ~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~~~i~~f~~er~v~~rE~~~g~Y~~~~y~ 317 (525)
|.++..|+++.+++|+++|++|++++.+++++++|.|++|+.+.++.+. +...++.|+.||++|+||+.+|+|++++|+
T Consensus 358 ~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~ 437 (617)
T TIGR00955 358 PLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYF 437 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHH
Confidence 9999999999999999999999999999999999999999988877666 457889999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 037973 318 LSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLF 394 (525)
Q Consensus 318 la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf 394 (525)
+|++++|+|+.++.+++|.+|+|||+|++++ |+.|++++++..+++.++|+++++++|+..+|..+++++++++++|
T Consensus 438 la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf 517 (617)
T TIGR00955 438 LAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLF 517 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 8888899999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc--cccccccccccCCCCCCCchhHHHHHHHhhhcccccccc
Q 037973 395 SGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV--KCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNMRIT 472 (525)
Q Consensus 395 ~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~--~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 472 (525)
+||+++.++||+||+|++|+||++|++|+++.|||.+.. +|... ..
T Consensus 518 ~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~--------------------------------~~ 565 (617)
T TIGR00955 518 GGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSA--------------------------------NT 565 (617)
T ss_pred hhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCc--------------------------------Cc
Confidence 999999999999999999999999999999999999865 46310 01
Q ss_pred ccccccChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 037973 473 TSTCLTTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKNKR 524 (525)
Q Consensus 473 ~~~C~~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~~r 524 (525)
+..|+.+|+++|+.+|++.++.|.++++|+++.++|++++|++||++.|++|
T Consensus 566 ~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 566 TGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2458889999999999999999999999999999999999999999877665
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.9e-83 Score=706.11 Aligned_cols=466 Identities=27% Similarity=0.462 Sum_probs=382.2
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++++++++++.+||++++|+.+|+...++||||||||++||++|+++|+||+|||||+|||+.++.++++.|++++++|+
T Consensus 178 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~ 257 (659)
T PLN03211 178 KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257 (659)
T ss_pred HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999999999988999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCCCC-----Cchhh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGSPG-----GTKSL 157 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 157 (525)
|||+++|||+.+++++||++++|++|++++.|+++++.+||+++|++||++.||+||++|+++....... .....
T Consensus 258 TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~ 337 (659)
T PLN03211 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVK 337 (659)
T ss_pred EEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHH
Confidence 9999999998779999999999999999999999999999999999999999999999999874321100 00001
Q ss_pred HHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCC-CCCCCCCChhHHHHHHHHHHHHHHhh
Q 037973 158 VEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPT-SMVPNFANPAWKEMVVLSQRSVTNSR 236 (525)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Q~~~L~~R~~~~~~ 236 (525)
....+.|++..... ..+..+........ .........+.. .....+.++||+|+.+|++|++++ +
T Consensus 338 ~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~ 403 (659)
T PLN03211 338 QSLVASYNTLLAPK------------VKAAIEMSHFPQAN-ARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-R 403 (659)
T ss_pred HHHHHHHHhhccHH------------HHHHHhhhhhhcch-hhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-H
Confidence 11223332111000 00000000000000 000000000000 011224578999999999999998 8
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHH-HHhhhHhhHHHHHHHHHHHhcCCCCChHH
Q 037973 237 RMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFY-TCADALPVFLQERYIFMRETAHNAYRRSS 315 (525)
Q Consensus 237 R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~i~~f~~er~v~~rE~~~g~Y~~~~ 315 (525)
||+.+...|+++++++|+++|++||+++ +.++++|.|++||++.+..+ .++.+++.|+.||++|+||+.+|+|++++
T Consensus 404 r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~ 481 (659)
T PLN03211 404 KHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSS 481 (659)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHH
Confidence 9999899999999999999999999985 67899999999998877554 56789999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 037973 316 YVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFL 392 (525)
Q Consensus 316 y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~ 392 (525)
|++|++++|+|+.++.+++|.+|+|||+||+++ |++|++++++..++++++|+++++++|+..+|++++++++++++
T Consensus 482 Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~ 561 (659)
T PLN03211 482 YFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFV 561 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 89999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc------cccccccccccCCCCCCCchhHHHHHHHhhhcc
Q 037973 393 LFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV------KCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRT 466 (525)
Q Consensus 393 lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~------~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (525)
+|+||+++ +||+||+|++|+||++|++|++++|||++.. .|....
T Consensus 562 lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~--------------------------- 612 (659)
T PLN03211 562 LTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH--------------------------- 612 (659)
T ss_pred HHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---------------------------
Confidence 99999997 7999999999999999999999999998643 242100
Q ss_pred ccccccccccccChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037973 467 LNMRITTSTCLTTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSK 521 (525)
Q Consensus 467 ~g~~~~~~~C~~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~ 521 (525)
......|...++.+++ +.+.|.++++|++++++||+++|++||+.++
T Consensus 613 ---~~~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 613 ---GSDRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred ---cCCCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0012346655655554 4568999999999999999999999987653
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-82 Score=752.55 Aligned_cols=492 Identities=21% Similarity=0.348 Sum_probs=412.9
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEE
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVI 85 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi 85 (525)
++++++.+||++++|+.+|++.+++|||||||||+||++|+++|++++|||||+|||+.++.++++.|++++++ |+|||
T Consensus 185 ~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvi 264 (1394)
T TIGR00956 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPL 264 (1394)
T ss_pred HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999975 89999
Q ss_pred EEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCC------CCCchhhHH
Q 037973 86 MSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGS------PGGTKSLVE 159 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 159 (525)
+++|||+++++++||+|++|++|+++++|+++++.+||+++|++||++.||+||++++++..++. ........+
T Consensus 265 i~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 265 VAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 99999988999999999999999999999999999999999999999999999999998743321 111233456
Q ss_pred HHHHHHhhhhhhccccCCC----c-ccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 037973 160 FNKTWQNMKQSRNTNAHSD----S-QGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTN 234 (525)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~ 234 (525)
+.+.|+++..++....+.+ . ......+...... .. ..++.....+.+..|+|+|+++|++|++++
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 414 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESH-VA---------KQSKRTRPSSPYTVSFSMQVKYCLARNFLR 414 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHH-Hh---------hhcccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 7777876654322110000 0 0000000000000 00 000111122357789999999999999999
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhcCCCCChH
Q 037973 235 SRRMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAHNAYRRS 314 (525)
Q Consensus 235 ~~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ 314 (525)
.+|||..+..|+++++++|+++|++||+++++++++++|.|++|+++.+..+.++..++.++.||+||+||+.+++|+++
T Consensus 415 ~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHH
Confidence 99999999999999999999999999999999999999999999999998888888889899999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 037973 315 SYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYF 391 (525)
Q Consensus 315 ~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~ 391 (525)
+|++|++++|+|+.++.+++|.+|+|||+||+.+ |++|+++++++.+++.++++++++++|+..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999965 9999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchh-HHHHHHHhhhccccc
Q 037973 392 LLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTA-MKVRLLETLGRTLNM 469 (525)
Q Consensus 392 ~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 469 (525)
++|+||++|.++||+||+|++|+||++|++||++.|||++.. +|.. ..|.+| +++.. .....|...|+.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~----~~p~g~--~y~~~~~~~~~C~~~g~~--- 645 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ----YVPSGG--GYDNLGVTNKVCTVVGAE--- 645 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc----cccCCC--CCCCCCccCccccCCCCc---
Confidence 999999999999999999999999999999999999999988 8952 112111 11110 001123322222
Q ss_pred cccccccccChHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037973 470 RITTSTCLTTGVDILD-KEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGS 520 (525)
Q Consensus 470 ~~~~~~C~~~G~~~L~-~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~ 520 (525)
.+.|.++|+++|+ .+|++++++|+|++|+++|+++|++++++++++.+
T Consensus 646 ---~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 646 ---PGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred ---CCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2345689999998 58999999999999999999999999999999976
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7e-81 Score=738.50 Aligned_cols=496 Identities=22% Similarity=0.405 Sum_probs=419.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI-LLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~-illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
++++++++++.+||++++|+.+|++. ++||||||||++||++|+++|+ ||||||||+|||+.++..+++.|++++++|
T Consensus 874 ~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g 952 (1394)
T TIGR00956 874 KMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG 952 (1394)
T ss_pred HHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 45689999999999999999998643 3799999999999999999997 999999999999999999999999999899
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCC-cEEEecCC----CChhhHHHhcCC-CCCCCCChHHHHHHHhhhhcCCCCCch
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRG-QTVYSGSP----MNLPHFFDEFGH-PIPENENRTEFALDLIRELEGSPGGTK 155 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G-~~v~~G~~----~~~~~~~~~~g~-~~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
+|||+++|||+..+++.||++++|++| +++++|++ .++.+||++.|+ +||++.|||||++|+++......
T Consensus 953 ~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~---- 1028 (1394)
T TIGR00956 953 QAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH---- 1028 (1394)
T ss_pred CEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc----
Confidence 999999999997778899999999997 99999997 467899999995 99999999999999987432211
Q ss_pred hhHHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh
Q 037973 156 SLVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNS 235 (525)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~ 235 (525)
...++.+.|+.+..... ..+.++...... . ...........+++++++|+|+++|++|++++.
T Consensus 1029 ~~~~~~~~~~~s~~~~~-----------~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~ 1091 (1394)
T TIGR00956 1029 ANQDYHEVWRNSSEYQA-----------VKNELDRLEAEL---S---KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQY 1091 (1394)
T ss_pred hhccHHHHHhcCHHHHH-----------HHHHHHHhhccc---c---cCccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 11245566765433221 111111100000 0 000000111234678899999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH-HHHhcCCCCChH
Q 037973 236 RRMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYIF-MRETAHNAYRRS 314 (525)
Q Consensus 236 ~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~f~~er~v~-~rE~~~g~Y~~~ 314 (525)
||||.++..|+++++++|+++|++|+++++++.++++|.|++|+.+.+..+...+.+|.|+.||.+| +||+.+|+|+++
T Consensus 1092 ~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~ 1171 (1394)
T TIGR00956 1092 WRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWL 1171 (1394)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHH
Confidence 9999999999999999999999999999999999999999999888877666778899999999886 899999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 037973 315 SYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG----------FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIV 384 (525)
Q Consensus 315 ~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~----------f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~ 384 (525)
+|++|++++|+|+.++.+++|.+|+|||+||+.+ |++|++++++..+++.++|+++++++|+..+|..++
T Consensus 1172 ~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~ 1251 (1394)
T TIGR00956 1172 AFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLA 1251 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 9999999999999999999999999999999742 788888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchhHHHHHHHhh
Q 037973 385 VAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTAMKVRLLETL 463 (525)
Q Consensus 385 ~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (525)
+++++++++|+||+++.++||.||+|++|+||++|++++++.|||+|.+ +|...+...++++ .+..|.++.+.|.+..
T Consensus 1252 ~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp-~~~tC~~y~~~~~~~~ 1330 (1394)
T TIGR00956 1252 SLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPP-SGQTCGEYMKPYLENA 1330 (1394)
T ss_pred HHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCC-CCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999988 9998877777643 3456777767777666
Q ss_pred hcccccccc---ccccc-cChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 037973 464 GRTLNMRIT---TSTCL-TTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKN 522 (525)
Q Consensus 464 ~~~~g~~~~---~~~C~-~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~ 522 (525)
+++...... +..|+ .+|+++|+.+|++.+++|+|++++++|++++ +++++.|+++.|.
T Consensus 1331 ~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1331 GGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARV 1392 (1394)
T ss_pred CcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEc
Confidence 655433222 33454 6899999999999999999999999998888 8888889887543
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.7e-80 Score=729.29 Aligned_cols=464 Identities=23% Similarity=0.441 Sum_probs=400.6
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++++++++++.+||++++|+.+|++.+++|||||||||+||++|+++|++|||||||+|||+.++..+++.|++++++|+
T Consensus 991 ~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~ 1070 (1470)
T PLN03140 991 KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1070 (1470)
T ss_pred HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 44679999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC-CcEEEecCC----CChhhHHHhc-CCC-CCCCCChHHHHHHHhhhhcCCCCCch
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR-GQTVYSGSP----MNLPHFFDEF-GHP-IPENENRTEFALDLIRELEGSPGGTK 155 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~-G~~v~~G~~----~~~~~~~~~~-g~~-~p~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
|||+++|||+.++++.||++++|++ |+++|+|++ .++.+||+++ |.+ ||++.|||||++|+++...+. .
T Consensus 1071 tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~----~ 1146 (1470)
T PLN03140 1071 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV----K 1146 (1470)
T ss_pred EEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc----c
Confidence 9999999999778999999999996 899999996 5789999997 664 999999999999998642211 1
Q ss_pred hhHHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh
Q 037973 156 SLVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNS 235 (525)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~ 235 (525)
...++.+.|+++..++.. .+.++.. .. . .. ..+.......|+.++|+|+++|++|+++++
T Consensus 1147 ~~~d~~~~~~~s~~~~~~-----------~~~~~~~-~~---~----~~-~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~ 1206 (1470)
T PLN03140 1147 LGIDFAEHYKSSSLYQRN-----------KALVKEL-ST---P----PP-GASDLYFATQYSQSTWGQFKSCLWKQWWTY 1206 (1470)
T ss_pred ccchHHHHHhccHHHHHH-----------HHHHHHh-cc---C----CC-CccccccCccccCCHHHHHHHHHHHHHHHH
Confidence 123566778766544321 1111110 00 0 00 001111124578899999999999999999
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHHH-HhhhHhhHHHHHHHHHHHhcCCCC
Q 037973 236 RRMPELFGIRAGAVIVTGFILATIFWQLDSSP---KGVQERLGFFAFAMSTTFYT-CADALPVFLQERYIFMRETAHNAY 311 (525)
Q Consensus 236 ~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~---~~~~~~~g~~f~~~~~~~~~-~~~~i~~f~~er~v~~rE~~~g~Y 311 (525)
||||.++..|+++++++|+++|++||++++++ ++++++.|++|+++.+..+. +.+.+|.|..||.+|+||+++|+|
T Consensus 1207 ~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y 1286 (1470)
T PLN03140 1207 WRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286 (1470)
T ss_pred HCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999764 57888999999988887664 456789999999999999999999
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037973 312 RRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAIL 388 (525)
Q Consensus 312 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~ 388 (525)
++++|++|++++|+|+.++.+++|.+|+|||+||+.+ |++|++++++..+++.++|+++++++|+.++|..++++++
T Consensus 1287 ~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~ 1366 (1470)
T PLN03140 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFY 1366 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865 8899999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchhHHHHHHHhhhccc
Q 037973 389 AYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTL 467 (525)
Q Consensus 389 ~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (525)
+++++|+||++|.++||+||+|++|+||++|++++|+.|||+|.+ .|. +++.+
T Consensus 1367 ~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~------~~~~~-------------------- 1420 (1470)
T PLN03140 1367 GLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIK------VPGGA-------------------- 1420 (1470)
T ss_pred HHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCccc------CCCCC--------------------
Confidence 999999999999999999999999999999999999999999977 552 11100
Q ss_pred cccccccccccChHHH-HhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 037973 468 NMRITTSTCLTTGVDI-LDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKNKR 524 (525)
Q Consensus 468 g~~~~~~~C~~~G~~~-L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~~r 524 (525)
...+++++ ++++|++++++|++++++++|+++|++++++++++.+++||
T Consensus 1421 --------~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1421 --------PDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred --------CCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 00245665 68899999999999999999999999999999999999987
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.6e-80 Score=728.68 Aligned_cols=461 Identities=22% Similarity=0.405 Sum_probs=398.2
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIV 84 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv 84 (525)
.++++++.+||++++||.||++.+++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++++ .|+|+
T Consensus 311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv 390 (1470)
T PLN03140 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390 (1470)
T ss_pred HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCCC--------CCchh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGSP--------GGTKS 156 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~--------~~~~~ 156 (525)
|+++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||+++++++.+... .....
T Consensus 391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~ 470 (1470)
T PLN03140 391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYIS 470 (1470)
T ss_pred EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCC
Confidence 9999999889999999999999999999999999999999999999999999999999987433211 01123
Q ss_pred hHHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhh
Q 037973 157 LVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNSR 236 (525)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~ 236 (525)
..++.+.|+++..... +.++++....+.+ ..+.....++|..++|.|++.+++|+++..+
T Consensus 471 ~~~~~~~~~~s~~~~~-----------~~~~~~~~~~~~~---------~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~ 530 (1470)
T PLN03140 471 VSEFAERFKSFHVGMQ-----------LENELSVPFDKSQ---------SHKAALVFSKYSVPKMELLKACWDKEWLLMK 530 (1470)
T ss_pred HHHHHHHHHhcHHHHH-----------HHHHHhhhhhhhh---------cccccccCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 4456667765543221 1111111110000 0011112345788999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhcCCCCCh
Q 037973 237 RMPELFGIRAGAVIVTGFILATIFWQLDSSP---KGVQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAHNAYRR 313 (525)
Q Consensus 237 R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~---~~~~~~~g~~f~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~ 313 (525)
||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++.+.++.++..++.++.||+||+|||+.++|++
T Consensus 531 Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~ 610 (1470)
T PLN03140 531 RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPP 610 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCH
Confidence 9999999999999999999999999997542 3456788988888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 037973 314 SSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAY 390 (525)
Q Consensus 314 ~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~ 390 (525)
++|++|++++++|+.++.+++|.+|+|||+||+++ ||.|+++++++.++++++++++++++|++.+|++++++++++
T Consensus 611 ~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~ 690 (1470)
T PLN03140 611 WTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLL 690 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchhHHHHHHHhhhccccc
Q 037973 391 FLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNM 469 (525)
Q Consensus 391 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 469 (525)
+++|+||+++.++||+||+|++|+||++|++||+++|||.+.. .|. .+.
T Consensus 691 ~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~-----~~~------------------------- 740 (1470)
T PLN03140 691 VFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK-----MAS------------------------- 740 (1470)
T ss_pred HHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc-----ccC-------------------------
Confidence 9999999999999999999999999999999999999997653 110 000
Q ss_pred cccccccccChHHHHhhcCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037973 470 RITTSTCLTTGVDILDKEAVNQL--SKWSCLWITVAWGFFFRFLFYFSLLLGS 520 (525)
Q Consensus 470 ~~~~~~C~~~G~~~L~~~~~~~~--~~w~~~~il~~~~i~f~~l~y~~L~~~~ 520 (525)
+.|..+|+++|+++|+..+ ..|+++++|++|+++|++++|++|++.+
T Consensus 741 ----~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 741 ----DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ----CCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1134689999999999765 4589999999999999999999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-77 Score=668.42 Aligned_cols=470 Identities=28% Similarity=0.512 Sum_probs=403.3
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP-ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
||.+.||++++.++|++++|.+||.++ +|||.+||||++||++|+.+| .||||||||||||+.+|..|++.+|+++++
T Consensus 901 ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~t 979 (1391)
T KOG0065|consen 901 EKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADT 979 (1391)
T ss_pred HHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhc
Confidence 566899999999999999999999999 999999999999999999999 899999999999999999999999999999
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeC-CcEEEecCCCC----hhhHHHhcC-CCCCCCCChHHHHHHHhhhhcCCCCCc
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSR-GQTVYSGSPMN----LPHFFDEFG-HPIPENENRTEFALDLIRELEGSPGGT 154 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~-G~~v~~G~~~~----~~~~~~~~g-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
|+||+||+|||+.++++.||++++|++ |++||+|+..+ +++||++.| .+||...|||||++|+++...+.
T Consensus 980 GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---- 1055 (1391)
T KOG0065|consen 980 GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---- 1055 (1391)
T ss_pred CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc----
Confidence 999999999999999999999999987 79999999976 467999985 99999899999999998753332
Q ss_pred hhhHHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 037973 155 KSLVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTN 234 (525)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~ 234 (525)
..-.++.+.|+++.++++. .+.++....+. . +...+....++|+.|+|.|++.+++|++..
T Consensus 1056 ~~~~D~a~~w~~S~e~k~~-----------~e~v~~l~~~~---~-----~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~s 1116 (1391)
T KOG0065|consen 1056 SLSVDFAEIWKNSEEYKRN-----------KELVKELSQPP---P-----GFSTDLEFKTRFAQSLWYQFKLCLWRQFLS 1116 (1391)
T ss_pred ccCccHHHHHhccHHHHHH-----------HHHHHHHhcCC---c-----cCCcccccccccchhHHHHHHHHHHHHHHH
Confidence 1224788999988776542 22222111100 0 011223344568999999999999999999
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHhcCCCCCh
Q 037973 235 SRRMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFYTCAD-ALPVFLQERYIFMRETAHNAYRR 313 (525)
Q Consensus 235 ~~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~i~~f~~er~v~~rE~~~g~Y~~ 313 (525)
+||+|.++.+|++..++.|+++|+.||+.+++.+++||.+|++|+++++......+ ..+....||.+++||+++|+|++
T Consensus 1117 yWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1117 YWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred HhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence 99999999999999999999999999999999999999999999999988766555 44556779999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 037973 314 SSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAY 390 (525)
Q Consensus 314 ~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~ 390 (525)
.+|++|++++|+|+.++++.+|.+++|+++|+..+ +++|++.+++..+...++|+++.+++||.++|..+.+.++++
T Consensus 1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 778888888888899999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchhHHHHHHHh-hhcccc
Q 037973 391 FLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTAMKVRLLET-LGRTLN 468 (525)
Q Consensus 391 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g 468 (525)
+.+|||+++|.+.||.||+|+||+||+.|..++|+..+++|.+ .|...+...++++ +...++++++. ++...|
T Consensus 1277 ~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp-----~g~tcge~m~~~~~~~~G 1351 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPP-----SGQTCGEFMEDFFGEGTG 1351 (1391)
T ss_pred HHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCC-----CCcCHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999999998 9987765544432 23345555554 331122
Q ss_pred cc------ccccccc-cChHHHHhhcCCCCCCchHHHHH
Q 037973 469 MR------ITTSTCL-TTGVDILDKEAVNQLSKWSCLWI 500 (525)
Q Consensus 469 ~~------~~~~~C~-~~G~~~L~~~~~~~~~~w~~~~i 500 (525)
.- .....|+ ..++++|..+++...++|+|+||
T Consensus 1352 y~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrnfgi 1390 (1391)
T KOG0065|consen 1352 YLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRNFGI 1390 (1391)
T ss_pred eeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHhhcc
Confidence 21 1333564 67999999999999999999987
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-76 Score=657.08 Aligned_cols=481 Identities=25% Similarity=0.483 Sum_probs=422.1
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIV 84 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tv 84 (525)
.+|.+++.+||++|+||+||++..||+||||||||+||.+++.+|+++++||+|+|||+.++.++++.||++++. +.|+
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999985 7899
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHhcCCCCCCCCChHHHHHHHhhhhcCCC--------CCchh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDEFGHPIPENENRTEFALDLIRELEGSP--------GGTKS 156 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~--------~~~~~ 156 (525)
++++|||+++++++||+|++|++|+++|+||.+++++||+++|+.||++.++|||+.++.++..... .....
T Consensus 315 ~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~ 394 (1391)
T KOG0065|consen 315 LVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTS 394 (1391)
T ss_pred EEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999998332211 11112
Q ss_pred hHHHHHHHHhhhhhhccccCCCcccccHHHHHHhhhhccccccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhh
Q 037973 157 LVEFNKTWQNMKQSRNTNAHSDSQGLSLKEAISASISRGKLVSGATNNDASSPTSMVPNFANPAWKEMVVLSQRSVTNSR 236 (525)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~ 236 (525)
..++.+.|.++..... +.+.++....+.+ ..+.....++|..|.|.|++.+++|.+...+
T Consensus 395 ~~ef~~~~~~s~~~~~-----------l~~~l~~~~~~~k---------~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k 454 (1391)
T KOG0065|consen 395 VSEFAEYFLNSEDYAK-----------LKKELSKPYDKSK---------KHKAALVSSKYSVPYWEQVKACTIREFLLMK 454 (1391)
T ss_pred HHHHHHHHhcchhhHH-----------HHHHhcchhhhhh---------ccchhhcCCceeccHHHHHHHHHHHHHHHHh
Confidence 3567777877655433 1222221111111 1223345567889999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHhcCCCCChHH
Q 037973 237 RMPELFGIRAGAVIVTGFILATIFWQLD-SSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAHNAYRRSS 315 (525)
Q Consensus 237 R~~~~~~~r~~~~~~~~l~~G~lf~~~~-~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~~ 315 (525)
||..++..+.++.+++|+++|++|++++ .+..+.+.|.|++||++.+..+.++..++...+.|+||+|+|...+|++|+
T Consensus 455 ~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A 534 (1391)
T KOG0065|consen 455 RNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWA 534 (1391)
T ss_pred CCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHH
Confidence 9999999999999999999999999999 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 037973 316 YVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFL 392 (525)
Q Consensus 316 y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~ 392 (525)
|.++..+.++|+.++.+.+|.+|+||++||.++ ||.|++++++...++.+++.++++++++..+|++++++.++...
T Consensus 535 ~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~ 614 (1391)
T KOG0065|consen 535 EALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLF 614 (1391)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHH
Confidence 999999999999999999999999999999976 99999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCc-cccccccccccCCCCCCCchhHHHHHHHhhhccccccc
Q 037973 393 LFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPV-KCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNMRI 471 (525)
Q Consensus 393 lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 471 (525)
+++||+||.++||+||+|++|+||+.|++|++++|||+++. .|...+. -+++-| ...+.|+..+.++|.+.
T Consensus 615 m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp-~y~n~~-------~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 615 MYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGP-AYDNIS-------IENKVCAATGATLGNDY 686 (1391)
T ss_pred HHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCC-cccccc-------cccccchhhccccCceE
Confidence 99999999999999999999999999999999999999998 8962211 111111 12355666666666653
Q ss_pred cccccccChHHHH-hhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037973 472 TTSTCLTTGVDIL-DKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGS 520 (525)
Q Consensus 472 ~~~~C~~~G~~~L-~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~ 520 (525)
+.|.+++ .+|++++.+.|+|+||++||.++|.++..+++.+.+
T Consensus 687 ------v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 687 ------VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ------EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 6788887 468888999999999999999999999999999886
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.1e-27 Score=219.05 Aligned_cols=112 Identities=29% Similarity=0.537 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
|.+++..++|+++||.+.+|.+. .+|||||||||+|||||+.+|+++++|||||.|||+...++++.+++||++|
T Consensus 112 eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 112 EAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 45668889999999999888765 4599999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|.|++||.+. -..+.+|||++|++|+++..|+|++.
T Consensus 187 mTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 187 MTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999998 58899999999999999999988765
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.4e-27 Score=227.75 Aligned_cols=112 Identities=28% Similarity=0.501 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
++++||.++|+.+||++.+|.... +|||||||||+|||||+.+|+||++|||||.|||.+...|+++|+++.++
T Consensus 117 ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l 191 (339)
T COG1135 117 EIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191 (339)
T ss_pred HHHHHHHHHHHHcCChhhhccCch-----hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc
Confidence 577899999999999988887654 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.||+++||+|. .+.++||||.+|++|++++.|+..++
T Consensus 192 glTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 192 GLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred CCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999987 68999999999999999999998776
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2e-25 Score=205.73 Aligned_cols=113 Identities=34% Similarity=0.530 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+++++++.+.++|.++.|+.+|+ +|.|+||||+||+||+++|++++|||||||||..+...+.+.++++.++|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 4578999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
++||+++|.+. ++.++||+|+++++|++|+.|+++++.
T Consensus 184 r~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 184 RAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred cEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 99999999987 799999999999999999999987663
No 13
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=215.63 Aligned_cols=111 Identities=30% Similarity=0.589 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
.+++|+++|+.+|+.+.+|+.+|. |||||+|||-|||||+++|++|+|||||+|+|+.++..++++|++++++|+
T Consensus 116 d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 116 DKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred HHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 458999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||++++||+. .+.+.||+|++|++ ++++.|+++++.
T Consensus 191 tIl~vtHDL~-~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 191 TVLMVTHDLG-LVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred EEEEEeCCcH-HhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999987 69999999999987 677899998763
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=3.7e-25 Score=215.92 Aligned_cols=112 Identities=31% Similarity=0.521 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
.++.|++.|+.+|+.+.+++.+.+ ||||||||+.||+||+++|++|+||||||.||...+.+++++++++++ +|
T Consensus 115 D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 115 DEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred HHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 345799999999999999999876 999999999999999999999999999999999999999999999995 59
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.|||+++||++ ...++||++++|++|+++..|+|+++.
T Consensus 190 ~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 190 LTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999997 588899999999999999999998773
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=4.6e-25 Score=222.93 Aligned_cols=115 Identities=36% Similarity=0.640 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG- 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g- 81 (525)
++++++++++.+||.+.+++++++ +|+|||||++||+||+++|+++||||||+||||.++.++.+.|++++++|
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~~~~-----lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~ 187 (293)
T COG1131 113 AEERIEELLELFGLEDKANKKVRT-----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187 (293)
T ss_pred HHHHHHHHHHHcCCchhhCcchhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999866676654 99999999999999999999999999999999999999999999999987
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHH
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFF 123 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~ 123 (525)
+||++|||+++ ++.++||+|++|++|++++.|+++++...+
T Consensus 188 ~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 188 VTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred cEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 79999999987 699999999999999999999887765443
No 16
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=211.90 Aligned_cols=112 Identities=28% Similarity=0.525 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+.++|++++++.+||.+.+++.+-+ |||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.++
T Consensus 114 e~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 114 EIEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred HHHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4568999999999999998887654 9999999999999999999999999999999999999999999999987
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+|++||+.. .+..++|++++|++|+++++|+|.++
T Consensus 189 ~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 189 GKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred CCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHH
Confidence 689999999987 68999999999999999999997554
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=2.3e-24 Score=204.28 Aligned_cols=112 Identities=38% Similarity=0.576 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 3 KKIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
.++.+..-|+.+||... +|. +|.+|||||+||+++|||++.||+|+|+||||+||||.++..+.++|+++.+.
T Consensus 121 i~~lv~~KL~~VGL~~~~~~~-----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l 195 (263)
T COG1127 121 IRELVLMKLELVGLRGAAADL-----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL 195 (263)
T ss_pred HHHHHHHHHHhcCCChhhhhh-----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh
Confidence 34556667888999765 444 45679999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|.|++++|||.. +++.+||++++|.+|+++++|+++++.
T Consensus 196 g~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 196 GLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred CCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 899999999987 699999999999999999999998763
No 18
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.3e-24 Score=212.55 Aligned_cols=114 Identities=26% Similarity=0.451 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
.++++.++|+.+||.+... +-+.+|.+|||||||||.||.+|+.+|++||.||||++||...+.+|+++|+++++ .|
T Consensus 127 a~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~ 204 (316)
T COG0444 127 AKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG 204 (316)
T ss_pred HHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 3568899999999986433 23567889999999999999999999999999999999999999999999999987 58
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.++|++|||+. .+.++||||.+|..|++|+.|+++++
T Consensus 205 ~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 205 TALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred CEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHH
Confidence 99999999987 69999999999999999999998765
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.2e-24 Score=200.84 Aligned_cols=113 Identities=30% Similarity=0.525 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
+.+.++-+.|+.+|+.+.+.++.++ |||||+|||+|||+|+++|++++.|||++.|||.++.++|+.|+++++ +
T Consensus 123 ~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~ 197 (258)
T COG3638 123 EDKAQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED 197 (258)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence 4456788899999999999999887 999999999999999999999999999999999999999999999986 5
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|.|||++.||.. -+.++||||+-|++|+++|.||+.++.
T Consensus 198 g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 198 GITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred CCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhh
Confidence 899999999986 588999999999999999999998864
No 20
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-23 Score=200.85 Aligned_cols=113 Identities=26% Similarity=0.468 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 2 KKKIRVQALIDQLGLRN--AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
++++|++|+|+.+||+. .+++ +|++|||||+|||.+||||+.+|++|+||||++.|||-++.++-+.++++.+
T Consensus 109 ~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~ 183 (309)
T COG1125 109 RIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183 (309)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH
Confidence 46679999999999975 4444 5677999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 80 S-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 80 ~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+ |+|||++|||.. |.++++|||.+|++|+++..++|+++.
T Consensus 184 ~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 184 ELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 5 999999999986 799999999999999999999998873
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=199.94 Aligned_cols=112 Identities=30% Similarity=0.495 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 3 KKIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
.++++.++++.+||.+ .+++. |.+||||||||++|||||+.+|++|+||||||.||+..+.+|+++|.++.++
T Consensus 117 ~~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 117 SQQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred HHHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 4556999999999975 34443 5679999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+-|.|+++||.+ -+.++||||++|++|++++.++..++.
T Consensus 192 ~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 192 GLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred CceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhh
Confidence 779999999987 699999999999999999999988764
No 22
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=221.52 Aligned_cols=115 Identities=29% Similarity=0.510 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
+.++++.++|+.+||.+.... +.+|++||||||||+.||+||+.+|++|++||||++||+.++.+|+++||++.+ .
T Consensus 128 ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~ 204 (539)
T COG1123 128 EARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL 204 (539)
T ss_pred HHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc
Confidence 456789999999999887665 568899999999999999999999999999999999999999999999999986 5
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|.++|++||++. .+.++||||++|.+|++|+.|+++++.
T Consensus 205 g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 205 GMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred CcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 889999999987 689999999999999999999998763
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.89 E-value=2.3e-23 Score=212.25 Aligned_cols=111 Identities=29% Similarity=0.548 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.++. ||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 190 (306)
T PRK13537 116 RALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT 190 (306)
T ss_pred HHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788999999999988988865 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||+++|++. ++.++||+|++|++|++++.|+++++.
T Consensus 191 ill~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 191 ILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999987 789999999999999999999987763
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.89 E-value=2.4e-23 Score=214.41 Aligned_cols=111 Identities=24% Similarity=0.459 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.++++.++++.+||.+..|+.++ .|||||||||+||+||+++|++|+|||||++||+.++..++++|++++++ |
T Consensus 117 ~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g 191 (343)
T TIGR02314 117 IKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG 191 (343)
T ss_pred HHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999988887765 49999999999999999999999999999999999999999999999875 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||++||++. .+.++||+|++|++|++++.|++.++
T Consensus 192 ~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 192 LTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999986 68899999999999999999997664
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.2e-23 Score=198.55 Aligned_cols=101 Identities=33% Similarity=0.585 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 3 KKIRVQALIDQLGLRNAAK-TVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~-~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
++++++++++.+||.+..+ .++. +|||||||||+|||||+.+|++++.||||.+||+.++..|++++++++++
T Consensus 118 ~~~~~~~l~~~lgl~~~~~~~~p~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~ 192 (226)
T COG1136 118 RKRAAEELLEVLGLEDRLLKKKPS-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192 (226)
T ss_pred HHHHHHHHHHhcCChhhhccCCch-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence 4678899999999987665 5554 59999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|+|+|++||+|. +...|||++.|.+|++
T Consensus 193 g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 193 GKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 899999999974 7889999999999983
No 26
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.89 E-value=4.6e-23 Score=209.84 Aligned_cols=111 Identities=32% Similarity=0.590 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 102 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~t 176 (302)
T TIGR01188 102 EERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176 (302)
T ss_pred HHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788999999999888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||+++|++. ++.++||+|++|++|++++.|+++++.
T Consensus 177 vi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 177 ILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999986 688999999999999999999887653
No 27
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=3.7e-23 Score=187.81 Aligned_cols=112 Identities=29% Similarity=0.532 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+.+++++.++..+||..+.++..+. |||||||||++||.|+++-+||+||||+|.|||.-+.+++.++.+++++
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999988765 9999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|++|+||||+ ++.++.|+++++++|+|.+.|+.++.
T Consensus 180 ~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 180 KMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred CCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 889999999998 69999999999999999999998764
No 28
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.4e-23 Score=206.92 Aligned_cols=124 Identities=26% Similarity=0.441 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 3 KKIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
.++++.++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 120 ~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g 194 (288)
T PRK13643 120 AEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194 (288)
T ss_pred HHHHHHHHHHHcCCChhhccCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCC
Confidence 345788999999996 45666654 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh---hHHHhcCCCCCC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP---HFFDEFGHPIPE 132 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~---~~~~~~g~~~p~ 132 (525)
.|||+++|++. ++.++||+|++|++|++++.|+++++. +.++..|..+|.
T Consensus 195 ~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 195 QTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence 99999999986 688899999999999999999987752 334455666553
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8e-23 Score=200.63 Aligned_cols=110 Identities=30% Similarity=0.530 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 188 (235)
T cd03261 114 REIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL 188 (235)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 45688899999998877877765 9999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 189 tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 189 TSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred EEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999987 68889999999999999999987554
No 30
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.88 E-value=8.8e-23 Score=210.42 Aligned_cols=111 Identities=30% Similarity=0.541 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 150 ~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~t 224 (340)
T PRK13536 150 EAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224 (340)
T ss_pred HHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45678899999999988988876 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||+++|++. ++.++||+|++|++|++++.|+++++.
T Consensus 225 ilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 225 ILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999987 799999999999999999999987764
No 31
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-22 Score=203.72 Aligned_cols=110 Identities=25% Similarity=0.464 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g 196 (290)
T PRK13634 122 KQKAREMIELVGLPEELLARSPF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196 (290)
T ss_pred HHHHHHHHHHCCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35789999999996 56677665 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. ++.+++|||++|++|++++.|+++++
T Consensus 197 ~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~ 233 (290)
T PRK13634 197 LTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREI 233 (290)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999987 68899999999999999999987664
No 32
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.6e-22 Score=201.59 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 116 ~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 190 (274)
T PRK13647 116 ERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT 190 (274)
T ss_pred HHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 35788999999998888887755 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. .+.++||++++|++|++++.|++++
T Consensus 191 ili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 191 VIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999986 5788999999999999999998754
No 33
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.5e-22 Score=202.93 Aligned_cols=110 Identities=27% Similarity=0.503 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 4 KIRVQALIDQLGLR--NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~--~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+++++++++.+||. +..|+.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 120 ~~~~~~~l~~~gL~~~~~~~~~~~-----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 194 (287)
T PRK13637 120 ENRVKRAMNIVGLDYEDYKDKSPF-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194 (287)
T ss_pred HHHHHHHHHHcCCCchhhccCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc
Confidence 45789999999997 56666654 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|||++||++. ++.++||+|++|++|++++.|+++++
T Consensus 195 g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 195 NMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 899999999986 68889999999999999999988765
No 34
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-22 Score=204.73 Aligned_cols=110 Identities=26% Similarity=0.521 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.
T Consensus 142 ~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 216 (305)
T PRK13651 142 KKRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216 (305)
T ss_pred HHHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 46789999999996 667777654 999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+.+++|+|++|++|++++.|+++++
T Consensus 217 tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 217 TIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred EEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999986 68899999999999999999998765
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=1.5e-22 Score=210.18 Aligned_cols=111 Identities=26% Similarity=0.404 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-- 80 (525)
.+++++++++.+||++..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++
T Consensus 114 ~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~ 188 (362)
T TIGR03258 114 IAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188 (362)
T ss_pred HHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCC
Confidence 346799999999999988888765 9999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 189 g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 189 ELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 789999999986 68999999999999999999998766
No 36
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=209.86 Aligned_cols=110 Identities=25% Similarity=0.450 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.++. |||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++.++ |.
T Consensus 112 ~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 186 (356)
T PRK11650 112 EERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT 186 (356)
T ss_pred HHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999988887754 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++.+++|+|++|++|+++..|+++++
T Consensus 187 tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 187 TSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999986 69999999999999999999998765
No 37
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.3e-19 Score=217.93 Aligned_cols=113 Identities=33% Similarity=0.551 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++.+|+.+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.++|++++ +|+|
T Consensus 1039 ~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~T 1112 (2272)
T TIGR01257 1039 QLEMEAMLEDTGLHHKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRT 1112 (2272)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCE
Confidence 45789999999999988888766 99999999999999999999999999999999999999999999995 6999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHH
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFF 123 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~ 123 (525)
||++||++. ++..++|||++|++|++++.|++.++++.+
T Consensus 1113 IIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1113 IIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999986 688899999999999999999988775443
No 38
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.88 E-value=1.6e-22 Score=212.04 Aligned_cols=110 Identities=25% Similarity=0.484 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+.. ||||||||+.||++|+++|++|+|||||+|||+.++.+++++|++++++|+|
T Consensus 117 ~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~T 191 (402)
T PRK09536 117 RAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191 (402)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 46789999999999988888765 9999999999999999999999999999999999999999999999988999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 192 IIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 192 AVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999987 68899999999999999999998764
No 39
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=2e-22 Score=197.86 Aligned_cols=110 Identities=28% Similarity=0.581 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 195 (236)
T cd03219 121 RERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGIT 195 (236)
T ss_pred HHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 34688999999998877777654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 196 ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 196 VLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999987 68889999999999999999887554
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.5e-22 Score=194.11 Aligned_cols=105 Identities=30% Similarity=0.523 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03259 108 RARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182 (213)
T ss_pred HHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 35688999999998888887765 9999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|||+++|++. ++.++||++++|++|++++.|
T Consensus 183 tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 183 TTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999986 688899999999999998765
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=1.9e-22 Score=205.43 Aligned_cols=109 Identities=29% Similarity=0.529 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus 114 ~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 188 (303)
T TIGR01288 114 AVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI 188 (303)
T ss_pred HHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4678899999999888888765 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. ++.++||++++|++|++++.|+++++
T Consensus 189 l~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 189 LLTTHFME-EAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred EEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999987 68899999999999999999988765
No 42
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.5e-22 Score=197.75 Aligned_cols=110 Identities=35% Similarity=0.584 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 196 (241)
T cd03256 122 KQRALAALERVGLLDKAYQRAD-----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGI 196 (241)
T ss_pred HHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3567889999999887777665 49999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 197 tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 197 TVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999987 58889999999999999999987654
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.4e-22 Score=195.21 Aligned_cols=109 Identities=32% Similarity=0.603 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|++..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (220)
T cd03265 109 RERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183 (220)
T ss_pred HHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999999888887765 9999999999999999999999999999999999999999999999886 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
|||+++|++. ++.+++|++++|++|+++..|++++
T Consensus 184 tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 184 TILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999987 6888999999999999999887654
No 44
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-22 Score=204.88 Aligned_cols=122 Identities=25% Similarity=0.471 Sum_probs=104.7
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 153 ~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~ 227 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK 227 (320)
T ss_pred HHHHHHHHHHcCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 45788999999996 55666554 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh---hHHHhcCCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP---HFFDEFGHPIP 131 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~---~~~~~~g~~~p 131 (525)
|||+++|+++ ++.++||++++|++|+++..|+++++. +.+...+...|
T Consensus 228 TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 228 TVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999986 578899999999999999999987652 23344454444
No 45
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=4.3e-22 Score=194.35 Aligned_cols=110 Identities=25% Similarity=0.450 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|
T Consensus 117 ~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~t 192 (227)
T cd03260 117 DERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YT 192 (227)
T ss_pred HHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cE
Confidence 4578899999999877666530 2459999999999999999999999999999999999999999999999887 99
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. ++.++||++++|++|++++.|++++
T Consensus 193 ii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 193 IVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999987 6888999999999999999998765
No 46
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=6.8e-24 Score=202.57 Aligned_cols=207 Identities=24% Similarity=0.386 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHHH-HhhhHhhHHHHH
Q 037973 222 KEMVVLSQRSVTNSRRMPELF-GIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTFYT-CADALPVFLQER 299 (525)
Q Consensus 222 ~Q~~~L~~R~~~~~~R~~~~~-~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~~~i~~f~~er 299 (525)
||++.+++|+++..+|||... ..+++..++.++++|.+|.+++++.++. ++.|+++..+...++. ..+.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998555555 7778777777766544 344447889999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 037973 300 YIFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGVVPHVM 378 (525)
Q Consensus 300 ~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~~~~~~ 378 (525)
..+.||+.++.|++.+|++++.+.+++..++.++++.++.|++.|++.+ ++.+++.+++..+++.++|.+++.++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~ 159 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFR 159 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999999876 777777888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhh
Q 037973 379 LGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEF 429 (525)
Q Consensus 379 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef 429 (525)
.+..+.+.+..++++++|.++|.+++|+|++|+.|+||++|+.|++..++|
T Consensus 160 ~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 160 DASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999998876
No 47
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=3.2e-22 Score=195.77 Aligned_cols=110 Identities=30% Similarity=0.440 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 92 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 166 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 34678899999998887877654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|+++..|+..++
T Consensus 167 tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 167 TVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999987 68889999999999999998876543
No 48
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=2.5e-22 Score=208.04 Aligned_cols=111 Identities=29% Similarity=0.519 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.++|++..|+.+. .|||||||||+||++|+.+|++++||||+++||+.++.++.+.|+++.++ |
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~ 185 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG 185 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45689999999999998888765 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 186 ~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 186 VTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred CEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999986 78999999999999999999998765
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=2.8e-22 Score=196.30 Aligned_cols=110 Identities=26% Similarity=0.525 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+++++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 111 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 185 (232)
T cd03218 111 EEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185 (232)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 45778999999998888877755 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 186 ii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 186 VLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999987 68999999999999999999886543
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=3.3e-22 Score=197.18 Aligned_cols=110 Identities=32% Similarity=0.556 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 197 (243)
T TIGR02315 123 KERALSALERVGLADKAYQRADQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGI 197 (243)
T ss_pred HHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788899999998877777654 9999999999999999999999999999999999999999999999764 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 198 tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 198 TVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999987 57889999999999999999887653
No 51
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.4e-22 Score=200.17 Aligned_cols=110 Identities=25% Similarity=0.468 Sum_probs=101.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 119 ~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 193 (283)
T PRK13636 119 RKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193 (283)
T ss_pred HHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45789999999999888887765 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|+++ ++.++||++++|++|++++.|++++.
T Consensus 194 tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 194 TIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999987 57789999999999999999998765
No 52
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.5e-22 Score=191.43 Aligned_cols=112 Identities=27% Similarity=0.558 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.++++.++|+.+||.+.+|++.|+ ||+|||||+.||+||+++|++|+||||.+||.+..+.++.+.|+++.++ |
T Consensus 126 ~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g 200 (250)
T COG0411 126 ARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGG 200 (250)
T ss_pred HHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 456788999999999999999987 9999999999999999999999999999999999999999999999984 6
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.||+++.|++. -++.+||||.+|+.|+++.+|+|+++.
T Consensus 201 ~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 201 VTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred cEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHh
Confidence 99999999997 699999999999999999999998873
No 53
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=3.2e-22 Score=207.25 Aligned_cols=110 Identities=24% Similarity=0.461 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|++..|+.+.. |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++ |.
T Consensus 114 ~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 188 (353)
T PRK10851 114 KAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKF 188 (353)
T ss_pred HHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 46889999999999888877654 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++.+++|+|++|++|+++..|+++++
T Consensus 189 tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 189 TSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999986 68999999999999999999998765
No 54
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.1e-22 Score=207.13 Aligned_cols=111 Identities=25% Similarity=0.472 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||.+..|+.+. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.++ |
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 187 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45689999999999988887765 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++.+++|+|++|++|+++..|+++++
T Consensus 188 ~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 188 ITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred CEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999986 68999999999999999999998765
No 55
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.7e-22 Score=196.43 Aligned_cols=109 Identities=25% Similarity=0.455 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|
T Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 189 (239)
T cd03296 115 AKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT 189 (239)
T ss_pred HHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 4678899999998887877765 9999999999999999999999999999999999999999999999875 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 190 vii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 190 TVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999986 58889999999999999999987554
No 56
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2.3e-22 Score=185.37 Aligned_cols=113 Identities=27% Similarity=0.516 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+++++.+++|++++|.|++|++-.. ||||||||+.|||+|+.+|+.++||||++|.||-+..+|.++++.|++.|
T Consensus 115 ~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 115 ERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred HHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 3445688999999999999998655 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.-|++|=|..+ |...+|||..++++|+++++|+|+++.
T Consensus 190 iGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 190 IGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred ceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999988 689999999999999999999998763
No 57
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=198.66 Aligned_cols=110 Identities=28% Similarity=0.463 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 188 (271)
T PRK13638 114 TRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188 (271)
T ss_pred HHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 34678899999998888877654 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 189 ii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 189 VIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999986 68889999999999999999987654
No 58
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-22 Score=206.39 Aligned_cols=110 Identities=27% Similarity=0.508 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 118 ~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 192 (343)
T PRK11153 118 KARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL 192 (343)
T ss_pred HHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999999888877654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 193 tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 193 TIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999987 68889999999999999999987654
No 59
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=5.6e-22 Score=190.60 Aligned_cols=101 Identities=28% Similarity=0.455 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+||.+..++.++. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 5788999999999888877654 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEE
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v 111 (525)
|+++|++. ++.+++|++++|++|+++
T Consensus 180 i~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 180 IVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999987 588899999999999875
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=5.6e-22 Score=191.63 Aligned_cols=105 Identities=28% Similarity=0.489 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 182 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT 182 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999888887765 9999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|||+++|++. ++.+++|++++|++|++++.|
T Consensus 183 tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 183 TTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999986 688899999999999999876
No 61
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.4e-22 Score=201.24 Aligned_cols=110 Identities=25% Similarity=0.456 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 196 (287)
T PRK13641 122 KEKALKWLKKVGLSEDLISKSPFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH 196 (287)
T ss_pred HHHHHHHHHHcCCChhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 45788999999997 577777765 999999999999999999999999999999999999999999999987899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 197 tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13641 197 TVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEI 232 (287)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999986 68899999999999999999987654
No 62
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.9e-22 Score=199.06 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 138 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 212 (269)
T cd03294 138 EERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212 (269)
T ss_pred HHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35688999999999888887765 9999999999999999999999999999999999999999999999764 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 213 tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 213 TIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999986 68889999999999999999987554
No 63
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.87 E-value=3.7e-22 Score=206.85 Aligned_cols=111 Identities=22% Similarity=0.424 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.++++.++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||++||+.++..+.+.++++.++ |
T Consensus 106 ~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~ 180 (363)
T TIGR01186 106 RKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180 (363)
T ss_pred HHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 356789999999998888887765 9999999999999999999999999999999999999999999999764 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||++||++. ++.+++|+|++|++|+++..|+++++
T Consensus 181 ~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 181 KTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999986 68899999999999999999998765
No 64
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.87 E-value=5.1e-22 Score=204.19 Aligned_cols=113 Identities=26% Similarity=0.445 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
++++.++++.+||.+..+. + +..+++||||||||++||++|+.+|++|++||||+|||+.++.+++++|++++++ |.
T Consensus 136 ~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 213 (330)
T PRK09473 136 FEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213 (330)
T ss_pred HHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 4578889999999754322 2 2456789999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++|||+. .+.+++|+|++|++|++++.|+++++
T Consensus 214 til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 214 AIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999987 67889999999999999999998665
No 65
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.87 E-value=5.8e-22 Score=181.43 Aligned_cols=108 Identities=30% Similarity=0.557 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+++|.++|+.+||.+.++... .+|||||+|||+||||++.+|++|+.||||.+|||..+.++++++.++.+.|
T Consensus 113 ~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 113 EIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred HHHHHHHHHHHHhccchhhhcCc-----cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 46789999999999999887764 4599999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
.||++.||+-. -+..+-.|++.|++|+++....
T Consensus 188 tTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 188 TTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred cEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 99999999965 5777788999999999987654
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=5.5e-22 Score=192.16 Aligned_cols=101 Identities=32% Similarity=0.549 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 190 (216)
T TIGR00960 116 NERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTT 190 (216)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 45788999999998888877654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||+++|++. .+.++||++++|++|++
T Consensus 191 ii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 191 VLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999986 68889999999999974
No 67
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=4.1e-22 Score=204.86 Aligned_cols=110 Identities=30% Similarity=0.453 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.. +.||||||||++||++|+.+|++|++||||+|||+.++.+++++|+++.++ |
T Consensus 138 ~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~ 212 (331)
T PRK15079 138 KDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212 (331)
T ss_pred HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcC
Confidence 45788999999994 4555554 459999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. .+.+++|+|++|++|++++.|+++++
T Consensus 213 ~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i 249 (331)
T PRK15079 213 LSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEV 249 (331)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999987 68889999999999999999987654
No 68
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-22 Score=203.91 Aligned_cols=114 Identities=27% Similarity=0.444 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
.+++++++++.+||.+..+. -+..+++|||||||||+||++|+.+|++|++||||+|||+.++.+++++|+++++ .|
T Consensus 127 ~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 127 RRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999753211 1223456999999999999999999999999999999999999999999999987 58
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. .+.+++|+|++|++|++++.|+++++
T Consensus 205 ~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~ 241 (326)
T PRK11022 205 MALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDI 241 (326)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999987 57889999999999999999998665
No 69
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.3e-22 Score=191.86 Aligned_cols=108 Identities=30% Similarity=0.428 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
.++++++++.++|.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 183 (220)
T cd03293 109 RERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGK 183 (220)
T ss_pred HHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788999999998877877654 999999999999999999999999999999999999999999999975 489
Q ss_pred EEEEEeCCCchHHHhhcCeEEEee--CCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLS--RGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~--~G~~v~~G~~~ 117 (525)
|||+++|++. ++.++||++++|+ +|+++..++.+
T Consensus 184 tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 184 TVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999986 5888999999999 79999887753
No 70
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=4e-22 Score=180.61 Aligned_cols=111 Identities=27% Similarity=0.475 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
..++.+.+|+.+||.+.+|.+.. .|||||+||++|||||+.+|+++++|||||.|||+-.-++++.+++||++|+
T Consensus 129 a~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgr 203 (256)
T COG4598 129 AIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGR 203 (256)
T ss_pred HHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 45678889999999988886654 5999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.+++||.+. ...+...+|++|++|.+-++|+|+++
T Consensus 204 TMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 204 TMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred eEEEEeeehh-HHHhhhhheEEeecceecccCChHHH
Confidence 9999999997 47889999999999999999999876
No 71
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=5.4e-22 Score=196.51 Aligned_cols=110 Identities=28% Similarity=0.483 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 122 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t 196 (250)
T PRK11264 122 TARARELLAKVGLAGKETSYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT 196 (250)
T ss_pred HHHHHHHHHHcCCcchhhCChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCE
Confidence 35688899999998877776654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 197 vi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 197 MVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999986 68889999999999999999886553
No 72
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=5.6e-22 Score=195.22 Aligned_cols=110 Identities=30% Similarity=0.533 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+.. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 188 (240)
T PRK09493 114 EKQARELLAKVGLAERAHHYPSE-----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188 (240)
T ss_pred HHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 35678999999998877777654 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|+++|++. ++.++||++++|++|++++.|++++.
T Consensus 189 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 189 MVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 999999987 68889999999999999999987654
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.3e-22 Score=198.82 Aligned_cols=109 Identities=28% Similarity=0.462 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+
T Consensus 118 ~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 192 (279)
T PRK13650 118 KERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQM 192 (279)
T ss_pred HHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999888877654 9999999999999999999999999999999999999999999999875 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++ ..||++++|++|+++..|++++.
T Consensus 193 tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 193 TVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred EEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999987 45 57999999999999999998664
No 74
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.1e-22 Score=203.36 Aligned_cols=111 Identities=24% Similarity=0.421 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 3 KKIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
.++++.++++.+||.+ ..++.+ +.||||||||++||++|+.+|++|++||||+|||..++.+++++|++++++
T Consensus 130 ~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 130 RREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred HHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 3467899999999963 456554 569999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|+|++||++. .+.+++|+|++|++|++++.|+++++
T Consensus 205 g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 205 GLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 899999999986 67889999999999999999997665
No 75
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.9e-22 Score=203.98 Aligned_cols=113 Identities=25% Similarity=0.414 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
++++.++++.+||.+..+. -+..++.|||||||||+||++|+.+|++|++||||+|||+.++.+++++|+++.++ |.
T Consensus 133 ~~~~~~~L~~~gL~~~~~~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ 210 (330)
T PRK15093 133 KRRAIELLHRVGIKDHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT 210 (330)
T ss_pred HHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999753221 12334569999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. .+.+++|+|++|++|++++.|+++++
T Consensus 211 tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i 246 (330)
T PRK15093 211 TILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKEL 246 (330)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999986 68889999999999999999987654
No 76
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=7.6e-22 Score=191.39 Aligned_cols=105 Identities=33% Similarity=0.632 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 188 (218)
T cd03266 114 TARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188 (218)
T ss_pred HHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 45788999999999888887765 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. ++.+++|++++|++|++++.|
T Consensus 189 ii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 189 ILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999986 688899999999999998754
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=5.2e-22 Score=207.12 Aligned_cols=110 Identities=28% Similarity=0.512 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.
T Consensus 111 ~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 185 (369)
T PRK11000 111 NQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (369)
T ss_pred HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999888887765 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++.+++|++++|++|+++..|+++++
T Consensus 186 tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 186 TMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999986 68899999999999999999998765
No 78
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=7.4e-22 Score=190.13 Aligned_cols=105 Identities=30% Similarity=0.547 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|++..++.++. ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 104 KKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred HHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 45788999999999888887765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
+|+++|++. ++.+++|++++|++|++++.|
T Consensus 179 ii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 179 VLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999987 578899999999999998765
No 79
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5e-22 Score=194.27 Aligned_cols=112 Identities=27% Similarity=0.483 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+++.+|+++|+.++|++.++++ |.+|||||||||++||||+.+|++|+||||.++||..-+.++.+.|+++.++
T Consensus 113 ~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~ 187 (345)
T COG1118 113 EIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187 (345)
T ss_pred hHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999987766 4679999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|++++|||+. ++++++|||++|++|+|..-|+++++
T Consensus 188 ~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 188 GVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred CceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999986 79999999999999999999999887
No 80
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=5.1e-22 Score=202.06 Aligned_cols=110 Identities=35% Similarity=0.594 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..|+.++. ||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~t 184 (301)
T TIGR03522 111 KQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKT 184 (301)
T ss_pred HHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCE
Confidence 46789999999999988888765 999999999999999999999999999999999999999999999965 799
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 185 iii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 185 IILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999987 699999999999999999999987764
No 81
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-21 Score=196.83 Aligned_cols=110 Identities=28% Similarity=0.506 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++.++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 115 ~~~~~~~l~~~~L~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~t 189 (275)
T PRK13639 115 EKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGIT 189 (275)
T ss_pred HHHHHHHHHHCCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 35788999999999888887765 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 190 il~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 190 IIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999986 68889999999999999999988765
No 82
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=5.6e-22 Score=194.16 Aligned_cols=113 Identities=23% Similarity=0.389 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
|+++++.+.|+.+||+..++.++. +|||||||||.+||||+++|+||++|||+|.|||--+.++-+.|.+|.++
T Consensus 140 er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l 214 (386)
T COG4175 140 EREERALEALELVGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214 (386)
T ss_pred HHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh
Confidence 678899999999999999888765 59999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.+||+++|||.. |.+++.|||.+|.+|+++..|+|+++.
T Consensus 215 ~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 215 KKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred CCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 899999999986 799999999999999999999998874
No 83
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=8.2e-22 Score=202.51 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|.+..++.+.. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999999888877654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++.+++|++++|++|+++..|+++++
T Consensus 153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999986 68899999999999999999998765
No 84
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=189.79 Aligned_cols=105 Identities=33% Similarity=0.526 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+|+.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 109 RISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred HHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 45788999999998877777654 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|||+++|++. ++.+++|++++|++|+++..|
T Consensus 184 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 184 PVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999986 588899999999999998765
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.8e-22 Score=192.95 Aligned_cols=110 Identities=26% Similarity=0.502 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
.++++++++.++|.+..++.+.. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (233)
T cd03258 118 EERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL 192 (233)
T ss_pred HHHHHHHHHHCCChhhhhcChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 34688899999998887777654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 193 tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 193 TIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999986 68889999999999999999876543
No 86
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.86 E-value=7.5e-22 Score=205.73 Aligned_cols=110 Identities=25% Similarity=0.426 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+. .|||||||||+||++|+.+|++|+||||++|||...+..+.+.|+++.++ |.
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~ 196 (375)
T PRK09452 122 TPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196 (375)
T ss_pred HHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999998888765 49999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++..++|+|++|++|+++..|++.++
T Consensus 197 tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 197 TFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999986 68999999999999999999998765
No 87
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=1.1e-21 Score=191.20 Aligned_cols=108 Identities=29% Similarity=0.612 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+++++..++.+++ ||||||||++||++|+.+|+++++||||+|||+.++..+.+.|++++++|+|+
T Consensus 92 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tv 166 (223)
T TIGR03771 92 AAVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166 (223)
T ss_pred HHHHHHHHHhCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 4688899999998877777655 99999999999999999999999999999999999999999999998789999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. ++.+++|+++++ +|++++.|++++.
T Consensus 167 ii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 167 LMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred EEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99999987 688999999999 8999999987664
No 88
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=1.3e-21 Score=189.17 Aligned_cols=104 Identities=32% Similarity=0.624 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 110 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 184 (213)
T cd03235 110 KAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 35788999999998877877765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. ++.+++|++++|++| +++.|
T Consensus 185 vi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 185 ILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999986 688899999999886 55554
No 89
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=9.9e-22 Score=192.32 Aligned_cols=110 Identities=25% Similarity=0.430 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 4 KIRVQALIDQLGLR---NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~---~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++++++++.++|. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++
T Consensus 100 ~~~~~~~l~~~~l~~~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (230)
T TIGR02770 100 RALILEALEAVGLPDPEEVLKKYPFQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174 (230)
T ss_pred HHHHHHHHHHcCCCchHHHHhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh
Confidence 35688999999997 455666554 9999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 -GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 -g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|||+++|+++ ++..++|++++|++|+++..|+++++
T Consensus 175 ~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 175 FGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 899999999987 68889999999999999999987554
No 90
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-21 Score=197.48 Aligned_cols=110 Identities=32% Similarity=0.515 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 189 (277)
T PRK13652 115 AHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGM 189 (277)
T ss_pred HHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35688999999998888887654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 190 tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 190 TVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHH
Confidence 9999999987 68889999999999999999988765
No 91
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.9e-22 Score=195.53 Aligned_cols=109 Identities=23% Similarity=0.504 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|
T Consensus 132 ~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~t 206 (255)
T PRK11300 132 DRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVT 206 (255)
T ss_pred HHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 4678889999998888887765 9999999999999999999999999999999999999999999999875 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|++++.
T Consensus 207 ii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 207 VLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 999999987 68889999999999999999987654
No 92
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.5e-22 Score=186.02 Aligned_cols=114 Identities=21% Similarity=0.369 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 2 KKKIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+.+++|++.|+.-.|. ++.|++ +....+|||||+||+.|||+|+.+|+||+||||||+|||.+...|-+++.+|+ +
T Consensus 121 ~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~ 197 (253)
T COG1117 121 ELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-K 197 (253)
T ss_pred HHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-h
Confidence 3457788889888884 455554 23456799999999999999999999999999999999999999999999998 4
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.-|||++||.|. ...+..|+..++..|+++++|+++++
T Consensus 198 ~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 198 KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 689999999997 68899999999999999999999876
No 93
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=192.26 Aligned_cols=110 Identities=23% Similarity=0.459 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.++. ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~ 181 (232)
T PRK10771 107 REKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL 181 (232)
T ss_pred HHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999888888765 9999999999999999999999999999999999999999999999764 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 182 tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 182 TLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999987 68889999999999999999986554
No 94
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=9.7e-22 Score=196.90 Aligned_cols=109 Identities=28% Similarity=0.469 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|
T Consensus 122 ~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 196 (269)
T PRK11831 122 STVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196 (269)
T ss_pred HHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 4678899999999888887765 9999999999999999999999999999999999999999999999865 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 197 iiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 197 CVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999976 68889999999999999999987554
No 95
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=194.94 Aligned_cols=110 Identities=24% Similarity=0.483 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.++. ||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~t 190 (255)
T PRK11231 116 NARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190 (255)
T ss_pred HHHHHHHHHHcCCHHHHcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 34688899999998888887655 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 191 iii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 191 VVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999987 68899999999999999999887654
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=197.86 Aligned_cols=110 Identities=27% Similarity=0.446 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
+++++++++.+||. +..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g 196 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVMSQSPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196 (286)
T ss_pred HHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 45788999999996 56776665 4999999999999999999999999999999999999999999999986 48
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. ++.+++|++++|++|++++.|++.++
T Consensus 197 ~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 197 KTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999986 58889999999999999999987664
No 97
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1e-21 Score=204.12 Aligned_cols=110 Identities=30% Similarity=0.584 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 183 (354)
T TIGR02142 109 RISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183 (354)
T ss_pred HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999888887755 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 184 tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 184 PILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999986 68889999999999999999987665
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.4e-21 Score=188.48 Aligned_cols=105 Identities=34% Similarity=0.609 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~t 180 (210)
T cd03269 106 RRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180 (210)
T ss_pred HHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 45788999999998888877654 9999999999999999999999999999999999999999999999888899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. ++.+++|++++|++|++++.|
T Consensus 181 ii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 181 VILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999986 588899999999999998764
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=1e-21 Score=190.68 Aligned_cols=108 Identities=34% Similarity=0.570 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus 111 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t 184 (220)
T cd03263 111 KEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRS 184 (220)
T ss_pred HHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCE
Confidence 35688999999998888887765 999999999999999999999999999999999999999999999976 589
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. .+.+++|++++|++|++++.|++++
T Consensus 185 ii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 185 IILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999987 5788999999999999999988754
No 100
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=196.30 Aligned_cols=110 Identities=26% Similarity=0.463 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 196 (280)
T PRK13649 122 EALAREKLALVGISESLFEKNPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM 196 (280)
T ss_pred HHHHHHHHHHcCCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 34678899999997 456766654 999999999999999999999999999999999999999999999987899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 197 tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 197 TIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred EEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999986 68889999999999999999987654
No 101
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.1e-21 Score=188.32 Aligned_cols=101 Identities=29% Similarity=0.448 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
|+++++++.|+.+||.+..|.. |++|||||||||+|||||+.+|++|+||||++.||+.|+.++.+.|.++.+ .
T Consensus 106 e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~ 180 (248)
T COG1116 106 EARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180 (248)
T ss_pred hHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh
Confidence 4566899999999999988776 456999999999999999999999999999999999999999999999976 5
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++||+++||+.. |...++|||++|.++
T Consensus 181 ~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 181 RKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 899999999987 677899999999984
No 102
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=194.06 Aligned_cols=110 Identities=28% Similarity=0.483 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRNAA-KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++++.++++.+||.+.. ++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 129 ~~~~~~~l~~~gl~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ 203 (257)
T PRK10619 129 RERAVKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 203 (257)
T ss_pred HHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 45788999999998753 55544 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|++++.
T Consensus 204 tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 204 TMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999986 68889999999999999999887554
No 103
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=188.17 Aligned_cols=105 Identities=29% Similarity=0.514 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 180 (211)
T cd03298 106 RQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM 180 (211)
T ss_pred HHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999888787765 49999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|||+++|++. ++.++||++++|++|+++..|
T Consensus 181 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 181 TVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999986 688899999999999998754
No 104
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=203.40 Aligned_cols=110 Identities=28% Similarity=0.487 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999888887754 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++.+++|++++|++|+++..|+++++
T Consensus 181 tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 181 PILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred eEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999986 68999999999999999999998765
No 105
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=195.92 Aligned_cols=109 Identities=26% Similarity=0.468 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 196 (280)
T PRK13633 122 RERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI 196 (280)
T ss_pred HHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999999888887765 9999999999999999999999999999999999999999999999864 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.. +|++++|++|++++.|+++++
T Consensus 197 tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 197 TIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred EEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999987 4655 999999999999999988765
No 106
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=194.84 Aligned_cols=109 Identities=29% Similarity=0.542 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 130 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 204 (262)
T PRK09984 130 KQRALQALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHhCCccc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35788999999998878887765 9999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
|||+++|++. .+.+++|++++|++|++++.|++++
T Consensus 205 tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 205 TVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999986 5888999999999999999998754
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=192.74 Aligned_cols=110 Identities=26% Similarity=0.527 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+|+.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 189 (241)
T PRK10895 115 EDRANELMEEFHIEHLRDSMGQS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189 (241)
T ss_pred HHHHHHHHHHcCCHHHhhcchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 45788999999998877776654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 190 iii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 190 VLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999999986 68899999999999999999887654
No 108
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=1.1e-21 Score=190.65 Aligned_cols=110 Identities=26% Similarity=0.516 Sum_probs=98.2
Q ss_pred HHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQL-GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l-~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+ ++.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 109 ~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 183 (222)
T cd03224 109 KARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGV 183 (222)
T ss_pred HHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 44677888888 577777777654 999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 184 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 184 TILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999986 68899999999999999998876543
No 109
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=2e-21 Score=189.24 Aligned_cols=109 Identities=29% Similarity=0.474 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++.++++.+||++..|+.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 102 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~t 176 (223)
T TIGR03740 102 DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176 (223)
T ss_pred HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 35788899999999888877655 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. ++.+++|++++|++|++++.|++.+
T Consensus 177 iii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 177 VILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999987 6888999999999999999998753
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=1.6e-21 Score=192.26 Aligned_cols=109 Identities=26% Similarity=0.493 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+|+.+..++.+++ ||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 194 (242)
T TIGR03411 121 KDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHS 194 (242)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCE
Confidence 45788999999998887877765 999999999999999999999999999999999999999999999976 789
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|++++.
T Consensus 195 ii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 195 VVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999986 68889999999999999999886554
No 111
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=192.27 Aligned_cols=110 Identities=27% Similarity=0.502 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 4 KIRVQALIDQLGLRN--AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~--~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+++++++++.+||.+ ..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~l~~l~l~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~ 185 (242)
T cd03295 111 RERADELLALVGLDPAEFADRYPH-----ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185 (242)
T ss_pred HHHHHHHHHHcCCCcHHHHhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 457889999999985 6666654 49999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 186 g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 186 GKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 899999999986 68889999999999999999876543
No 112
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.9e-21 Score=192.36 Aligned_cols=109 Identities=24% Similarity=0.409 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+||. +..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 118 DEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK 192 (247)
T ss_pred HHHHHHHHHHcCCCcchhhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 35688899999997 55666554 4999999999999999999999999999999999999999999999977
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ +|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 193 ~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 193 K-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred c-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4 89999999987 68889999999999999999987654
No 113
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-21 Score=204.01 Aligned_cols=111 Identities=26% Similarity=0.436 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.++|.+..++.+. +|||||||||+||++|+.+|++|+|||||++||...+..+.+.|+++.++ |
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 200 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35678999999999988887765 49999999999999999999999999999999999999999999998764 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|++++|++|+++..|+++++
T Consensus 201 ~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 201 VTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred CEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 99999999986 78999999999999999999998765
No 114
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=1.7e-21 Score=192.04 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+||. +..++.++ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 196 (243)
T TIGR01978 121 KLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRS 196 (243)
T ss_pred HHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcE
Confidence 5688899999997 45565553 149999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhh-cCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGL-LDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~-~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+... +|++++|++|++++.|+++++
T Consensus 197 vi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 197 FLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999999986 57777 899999999999999987644
No 115
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=192.64 Aligned_cols=109 Identities=25% Similarity=0.436 Sum_probs=97.7
Q ss_pred HHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQL-GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l-~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+ ++.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 115 ~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 115 ERIKWVYELFPRLHERRIQRAG-----TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189 (237)
T ss_pred HHHHHHHHHHHHHHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 4567778888 57766666654 49999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 190 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 190 IFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999986 68899999999999999999987654
No 116
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=195.51 Aligned_cols=109 Identities=27% Similarity=0.452 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 188 (274)
T PRK13644 114 RKRVDRALAEIGLEKYRHRSPKT-----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188 (274)
T ss_pred HHHHHHHHHHCCCHHHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 45688899999999888887755 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++ +.+|++++|++|++++.|+++++
T Consensus 189 il~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 189 IVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred EEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 999999987 46 56999999999999999987654
No 117
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1.5e-21 Score=203.18 Aligned_cols=111 Identities=24% Similarity=0.431 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
++++++++++.+||++..|+.+++ ||||||||+.||++|+++|+||+|||||+|||+.++.++.+.|++++++ |
T Consensus 141 ~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~ 215 (382)
T TIGR03415 141 RRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN 215 (382)
T ss_pred HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 346789999999999888887765 9999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||++||++. ++.+++|+|++|++|+++..|+++++
T Consensus 216 ~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 216 KTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999987 68899999999999999999998765
No 118
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=1.7e-21 Score=194.81 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.++ .||||||||++||++|+++|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 127 ~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 201 (265)
T TIGR02769 127 KARIAELLDMVGLRSEDADKLPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG 201 (265)
T ss_pred HHHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45788999999996 56677665 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. .+.+++|++++|++|++++.|+++++
T Consensus 202 ~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (265)
T TIGR02769 202 TAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQL 238 (265)
T ss_pred cEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHH
Confidence 99999999986 67889999999999999999987655
No 119
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.86 E-value=2.5e-21 Score=188.74 Aligned_cols=105 Identities=24% Similarity=0.388 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|++..++.+++ ||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~t 194 (224)
T cd03220 120 DEKIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT 194 (224)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 34678889999998888887765 9999999999999999999999999999999999999999999999888899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. ++.+++|++++|++|++++.|
T Consensus 195 iii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 195 VILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999986 688899999999999998765
No 120
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.86 E-value=9.6e-22 Score=199.09 Aligned_cols=112 Identities=26% Similarity=0.501 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+.+++|+++.+.|+|++..|++.. +|||||||||+|||||+++|++++||||+|+||+..+.++...|+++.++
T Consensus 109 ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l 183 (338)
T COG3839 109 EIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL 183 (338)
T ss_pred HHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999998864 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|+|.+|||.. |+..++|||.+|++|++...|+|.++
T Consensus 184 ~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 184 GTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred CCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHH
Confidence 889999999976 79999999999999999999999887
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2e-21 Score=187.55 Aligned_cols=104 Identities=36% Similarity=0.632 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 181 (211)
T cd03264 108 KARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRI 181 (211)
T ss_pred HHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCE
Confidence 45688899999998877877755 999999999999999999999999999999999999999999999986 589
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. .+.+++|++++|++|++++.|
T Consensus 182 ii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 182 VILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999986 578899999999999998765
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=191.18 Aligned_cols=109 Identities=25% Similarity=0.467 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
.++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 119 ~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~t 193 (242)
T PRK11124 119 LARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGIT 193 (242)
T ss_pred HHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence 3567889999999887787765 49999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
+|+++|++. ++.+++|++++|.+|++++.|++++
T Consensus 194 ii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 194 QVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999987 6778999999999999999988654
No 123
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=203.78 Aligned_cols=110 Identities=24% Similarity=0.412 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||++..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+
T Consensus 142 ~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~ 216 (400)
T PRK10070 142 REKALDALRQVGLENYAHSYPDE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216 (400)
T ss_pred HHHHHHHHHHcCCChhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCC
Confidence 45788999999999888877654 999999999999999999999999999999999999999999999976 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 217 TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 217 TIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred eEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHH
Confidence 9999999986 68899999999999999999987654
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=2.1e-21 Score=193.05 Aligned_cols=109 Identities=28% Similarity=0.495 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+++.+..++.++. ||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++|.||
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 190 (256)
T TIGR03873 116 AVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190 (256)
T ss_pred HHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4688899999998877887765 99999999999999999999999999999999999999999999998778999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. .+.+++|++++|++|+++..|++++.
T Consensus 191 ii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 191 VAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999987 68889999999999999999986554
No 125
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.1e-21 Score=192.35 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
.++++++++.+++.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 194 (269)
T PRK13648 120 HRRVSEALKQVDMLERADYEPN-----ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194 (269)
T ss_pred HHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3467889999999887777765 49999999999999999999999999999999999999999999999865 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.. +|++++|++|++++.|++++.
T Consensus 195 tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 195 TIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred EEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999987 4665 999999999999999987654
No 126
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=193.76 Aligned_cols=110 Identities=32% Similarity=0.521 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 125 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~ 199 (265)
T PRK10575 125 REKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199 (265)
T ss_pred HHHHHHHHHHcCCHHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35688999999998877877765 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 200 tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 200 TVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999987 68889999999999999999886554
No 127
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.5e-21 Score=193.56 Aligned_cols=109 Identities=23% Similarity=0.438 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
++++++++.+||.+..++.+.. ||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++++ |.|
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~t 196 (265)
T PRK10253 122 EAVTKAMQATGITHLADQSVDT-----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYT 196 (265)
T ss_pred HHHHHHHHHcCCHHHhcCCccc-----CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 4688999999998877777654 9999999999999999999999999999999999999999999999874 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 197 iii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 197 LAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999987 68999999999999999999987654
No 128
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=2.8e-21 Score=186.43 Aligned_cols=100 Identities=32% Similarity=0.558 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.++. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 186 (211)
T cd03225 112 EERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKT 186 (211)
T ss_pred HHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 34678899999998877777654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
||+++|++. ++.++||++++|++|+
T Consensus 187 vi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 187 IIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999986 6888999999999985
No 129
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.6e-21 Score=193.70 Aligned_cols=109 Identities=26% Similarity=0.433 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 118 ~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~ 192 (279)
T PRK13635 118 VERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI 192 (279)
T ss_pred HHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999888887765 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++. .+|++++|++|++++.|+++++
T Consensus 193 tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 193 TVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred EEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHH
Confidence 9999999987 455 5999999999999999987654
No 130
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=2.9e-21 Score=192.30 Aligned_cols=110 Identities=31% Similarity=0.481 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDII------HDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 112 DALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred HHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 35688899999998877887765 9999999999999999 599999999999999999999999999999
Q ss_pred H-HcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 A-QSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~-~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ ++|+|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 187 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 187 AHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 8 67899999999986 68889999999999999999886554
No 131
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.7e-21 Score=195.66 Aligned_cols=109 Identities=29% Similarity=0.493 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
++++++++.++|. +..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 128 ~~~~~ll~~~~L~~~~~~~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 202 (289)
T PRK13645 128 KKVPELLKLVQLPEDYVKRSPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202 (289)
T ss_pred HHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 5678899999994 567776654 9999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 203 tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 203 RIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999986 68889999999999999999987654
No 132
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=4.3e-21 Score=185.58 Aligned_cols=106 Identities=21% Similarity=0.361 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+. .||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.++ |.
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 180 (213)
T TIGR01277 106 QEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180 (213)
T ss_pred HHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4578889999999887777765 49999999999999999999999999999999999999999999999865 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
|||+++|++. ++.+++|++++|++|+++..|+
T Consensus 181 tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 181 TLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999986 6788999999999999998875
No 133
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.85 E-value=1.7e-21 Score=206.46 Aligned_cols=113 Identities=28% Similarity=0.472 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+++++|+++++.+||... ..+.+|++||||||||++||+||+.+|++|++|||||.||+..+.+++++|+++.++
T Consensus 404 ~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 404 ERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred HHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 455789999999999852 233456679999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|.++++||.. .+..+||||.+|++|++|+.|+.+++
T Consensus 480 g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 480 GLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred CCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHH
Confidence 999999999987 69999999999999999999976655
No 134
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=5e-21 Score=186.80 Aligned_cols=104 Identities=48% Similarity=0.834 Sum_probs=94.5
Q ss_pred HHHH-HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 6 RVQA-LIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 6 ~v~~-~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++ .++.+++++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~ti 196 (226)
T cd03234 122 RVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196 (226)
T ss_pred HHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 4555 8889999877777665 499999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|+++|++..++.+++|++++|++|++++.|
T Consensus 197 ii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999855799999999999999998865
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=4.6e-21 Score=190.58 Aligned_cols=108 Identities=25% Similarity=0.433 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 111 RDAALQALAAVGLADRANEWPAA-----LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788999999998877777654 999999999999999999999999999999999999999999999965 489
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
|||+++|++. .+.+++|++++|++|++++.|+.+
T Consensus 186 tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 186 TVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999987 578899999999999999988754
No 136
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.85 E-value=3.3e-21 Score=189.31 Aligned_cols=109 Identities=36% Similarity=0.620 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||++..++.++. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+
T Consensus 110 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 184 (236)
T TIGR03864 110 RERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL 184 (236)
T ss_pred HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35678899999998887877765 999999999999999999999999999999999999999999999985 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++. .+|++++|++|++++.|++++.
T Consensus 185 tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 185 SVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred EEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999987 455 5999999999999999876544
No 137
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.85 E-value=2.8e-21 Score=187.37 Aligned_cols=100 Identities=29% Similarity=0.578 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 192 (218)
T cd03255 118 RERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT 192 (218)
T ss_pred HHHHHHHHHHcCCchhhhcChhh-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999998877877655 999999999999999999999999999999999999999999999987 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|||+++|++. ++. .||++++|++|++
T Consensus 193 tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 193 TIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred eEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 9999999987 455 8999999999974
No 138
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=3.3e-21 Score=186.27 Aligned_cols=101 Identities=31% Similarity=0.598 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 188 (214)
T cd03292 114 RKRVPAALELVGLSHKHRALPAE-----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188 (214)
T ss_pred HHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence 35688999999998877777654 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
+|+++|++. .+.+++|++++|++|++
T Consensus 189 iiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 189 VVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999986 67889999999999974
No 139
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.85 E-value=3.6e-21 Score=186.07 Aligned_cols=100 Identities=35% Similarity=0.578 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T TIGR02673 115 QRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189 (214)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 45788999999998777777654 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
||+++|++. ++.++||++++|++|+
T Consensus 190 ii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 190 VIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999986 6888999999999985
No 140
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=3.5e-21 Score=190.99 Aligned_cols=110 Identities=28% Similarity=0.486 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.
T Consensus 124 ~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 198 (252)
T TIGR03005 124 EKRAMELLDMVGLADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDL 198 (252)
T ss_pred HHHHHHHHHHcCChhHhhcChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 3567889999999887777654 49999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 199 tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 199 TMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999987 68889999999999999999886544
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.7e-21 Score=193.20 Aligned_cols=109 Identities=24% Similarity=0.444 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 121 ~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~ 195 (282)
T PRK13640 121 IKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNL 195 (282)
T ss_pred HHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999887777765 59999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+ ..||++++|++|++++.|+++++
T Consensus 196 tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 196 TVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred EEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999987 45 57999999999999999988665
No 142
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=4.6e-21 Score=190.83 Aligned_cols=110 Identities=23% Similarity=0.442 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+++.+ ..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 128 ~~~~~~~l~~~~l~~~~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 202 (258)
T PRK11701 128 RATAGDWLERVEIDAARIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHHHHHHHcCCChhHHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 456788999999974 5666665 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. .+.+.+|++++|++|++++.|+++++
T Consensus 203 ~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 203 LAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999986 57789999999999999999987654
No 143
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=4.9e-21 Score=188.16 Aligned_cols=105 Identities=31% Similarity=0.558 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..|+.+++ ||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++ ++
T Consensus 131 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 205 (236)
T cd03267 131 KKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGT 205 (236)
T ss_pred HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 34678899999999888888765 9999999999999999999999999999999999999999999999875 88
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|||+++|++. ++.+++|++++|++|++++.|
T Consensus 206 tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 206 TVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999986 688899999999999998765
No 144
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=4.4e-21 Score=189.89 Aligned_cols=110 Identities=28% Similarity=0.465 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH-------DPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~-------~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++.+||.+..++.++. ||||||||++||++|+. +|++++|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 104 ASALNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178 (248)
T ss_pred HHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 45788999999998877777654 99999999999999997 6799999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++++|+|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 179 ~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 179 LCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9888999999999986 68899999999999999999876543
No 145
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.6e-21 Score=191.71 Aligned_cols=109 Identities=22% Similarity=0.456 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 120 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~t 194 (272)
T PRK15056 120 RQIVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKT 194 (272)
T ss_pred HHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 34678899999999888887765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+++|+++++ +|+++..|+++++
T Consensus 195 viivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 195 MLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999986 688899999877 8999999987654
No 146
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.6e-21 Score=190.89 Aligned_cols=108 Identities=20% Similarity=0.337 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 129 ~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~- 202 (258)
T PRK14268 129 GVVENALRSAALWDETSDRLKSPAL-----SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK- 202 (258)
T ss_pred HHHHHHHHHcCCCcchhhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-
Confidence 4678899999884 34455554 5999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 203 ~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 203 DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 799999999986 57889999999999999999987654
No 147
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=5e-21 Score=189.95 Aligned_cols=110 Identities=24% Similarity=0.454 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+++. +..++.+.. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~-----LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 199 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRA-----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG 199 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 45778899999996 466766654 9999999999999999999999999999999999999999999998764 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|+++|++. .+.+.+|++++|++|+++..|+++++
T Consensus 200 ~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 200 LAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 99999999986 68889999999999999999987544
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.7e-21 Score=188.27 Aligned_cols=110 Identities=29% Similarity=0.453 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.++|. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 182 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDVK-----NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 35678899999996 45666554 49999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. ++.+++|++++|++|+++..|++.++
T Consensus 183 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 183 LTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred CEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999987 58889999999999999999887654
No 149
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.8e-21 Score=186.31 Aligned_cols=107 Identities=26% Similarity=0.452 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ +|+
T Consensus 123 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~ 197 (233)
T PRK11629 123 NSRALEMLAAVGLEHRANHRPSE-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT 197 (233)
T ss_pred HHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45788999999998877777654 999999999999999999999999999999999999999999999976 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
|||+++|++. ++.. +|++++|++|+++..|+..
T Consensus 198 tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~~ 230 (233)
T PRK11629 198 AFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSLM 230 (233)
T ss_pred EEEEEeCCHH-HHHh-hCEEEEEECCEEEEEeccC
Confidence 9999999986 4555 6899999999999988754
No 150
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5e-21 Score=208.66 Aligned_cols=110 Identities=19% Similarity=0.410 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 123 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 197 (510)
T PRK09700 123 RVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197 (510)
T ss_pred HHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 35788999999999888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 198 iiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 198 IVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999986 68889999999999999999998765
No 151
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=5.9e-21 Score=189.62 Aligned_cols=109 Identities=25% Similarity=0.393 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 5 IRVQALIDQLGLRN---AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~---~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
++++++++.++|.+ ..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 116 ATLTAALEAVGLENAARVLKLYPF-----EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHHHHHcCCCChhhhhhcCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 56888999999976 3455554 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 191 g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 191 ALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred CcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 899999999987 57889999999999999999887554
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=5.8e-21 Score=184.43 Aligned_cols=101 Identities=29% Similarity=0.531 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+|+.+..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 187 (213)
T cd03262 113 EERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 187 (213)
T ss_pred HHHHHHHHHHcCCHhHhhhCccc-----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 35678899999998877877654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||+++|++. ++.+++|++++|++|++
T Consensus 188 vi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 188 MVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999986 68889999999999974
No 153
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=4.9e-21 Score=191.60 Aligned_cols=110 Identities=17% Similarity=0.334 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 126 ~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 200 (267)
T PRK15112 126 EKQIIETLRQVGLLPDHASYYPH-----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred HHHHHHHHHHcCCChHHHhcCch-----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 35678899999994 56666654 49999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. ++..+||++++|++|+++..|+++++
T Consensus 201 ~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 201 ISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999986 68889999999999999998876543
No 154
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=6.4e-21 Score=186.04 Aligned_cols=101 Identities=28% Similarity=0.482 Sum_probs=91.5
Q ss_pred HHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEE
Q 037973 8 QALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVI 85 (525)
Q Consensus 8 ~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi 85 (525)
+++++.+++. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNRYPHE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhCCchh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788999995 566766654 9999999999999999999999999999999999999999999999876 89999
Q ss_pred EEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 86 MSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
+++|++. ++.+++|++++|++|+++..|
T Consensus 201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999986 677899999999999998764
No 155
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.1e-21 Score=187.34 Aligned_cols=110 Identities=26% Similarity=0.465 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
++++.++++.+||.+..++.+.+ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 181 (235)
T cd03299 107 ERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181 (235)
T ss_pred HHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34678899999998888887755 9999999999999999999999999999999999999999999999765 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 182 tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 182 TVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999986 58889999999999999999886544
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.7e-21 Score=189.26 Aligned_cols=108 Identities=22% Similarity=0.381 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~ 194 (250)
T PRK14245 121 QRVEETLKGAALWDEVKDKLKESA-----FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K 194 (250)
T ss_pred HHHHHHHHHcCCCcchhhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c
Confidence 46788999999864 334444 4599999999999999999999999999999999999999999999995 5
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 195 ~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 195 DYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHH
Confidence 799999999987 68889999999999999999987665
No 157
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.4e-21 Score=188.64 Aligned_cols=108 Identities=28% Similarity=0.420 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~ 180 (255)
T PRK11248 106 LEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGK 180 (255)
T ss_pred HHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999998877777654 999999999999999999999999999999999999999999999965 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEee--CCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLS--RGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~--~G~~v~~G~~~ 117 (525)
|||+++|++. ++.++||++++|+ +|+++..++.+
T Consensus 181 tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 181 QVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999987 6888999999998 59999988754
No 158
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=8.3e-21 Score=184.70 Aligned_cols=102 Identities=32% Similarity=0.507 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (222)
T PRK10908 115 RRRVSAALDKVGLLDKAKNFPIQ-----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189 (222)
T ss_pred HHHHHHHHHHcCChhhhhCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCE
Confidence 34678899999998877777654 9999999999999999999999999999999999999999999999878899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEE
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v 111 (525)
+|+++|++. ++.+.+|++++|++|+++
T Consensus 190 iii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 190 VLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999987 688899999999999975
No 159
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=7.6e-21 Score=206.77 Aligned_cols=110 Identities=22% Similarity=0.397 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~t 193 (501)
T PRK10762 119 YAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193 (501)
T ss_pred HHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 35788999999999888888776 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||+|++|++|+++..|+++++
T Consensus 194 vii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 194 IVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999986 68899999999999999999998775
No 160
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=3.4e-21 Score=193.80 Aligned_cols=115 Identities=27% Similarity=0.503 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+.++++.++|+.+|+.+..... +.+|++|||||||||.||+||+.+|++||.||||+.||...+.+|+++|++|.++
T Consensus 130 ~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~ 207 (534)
T COG4172 130 AARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL 207 (534)
T ss_pred HHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh
Confidence 3467889999999998876654 5688999999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|..++++|||.. -+.+++|||.+|.+|++++.|+.+++
T Consensus 208 gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 208 GMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred CcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHH
Confidence 899999999987 68999999999999999999997665
No 161
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.3e-21 Score=207.15 Aligned_cols=110 Identities=22% Similarity=0.392 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~t 195 (506)
T PRK13549 121 YLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIA 195 (506)
T ss_pred HHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 35788999999998888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 196 vi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 196 CIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 999999986 68889999999999999999998775
No 162
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=5.3e-21 Score=207.50 Aligned_cols=110 Identities=24% Similarity=0.365 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 187 (490)
T PRK10938 113 PARCEQLAQQFGITALLDRRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187 (490)
T ss_pred HHHHHHHHHHcCCHhhhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 45788999999999888888766 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+.++||++++|++|+++..|++++.
T Consensus 188 vii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 188 LVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999986 68899999999999999999987553
No 163
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=1.3e-20 Score=186.83 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+||. +..++.++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 128 ~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 203 (252)
T CHL00131 128 EIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENS 203 (252)
T ss_pred HHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 4677889999996 35555543 249999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhh-cCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGL-LDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~-~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. .+... +|++++|++|++++.|+++.
T Consensus 204 ii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 204 IILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred EEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999986 46555 89999999999999998874
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.7e-21 Score=206.93 Aligned_cols=109 Identities=26% Similarity=0.485 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.++|. +..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.++|++++++|+|
T Consensus 383 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 457 (506)
T PRK13549 383 KTILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVA 457 (506)
T ss_pred HHHHHHHHhcCccCCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCE
Confidence 5688999999996 567887766 9999999999999999999999999999999999999999999999988999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 458 vi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 458 IIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999986 68899999999999999999988765
No 165
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.9e-21 Score=188.69 Aligned_cols=109 Identities=23% Similarity=0.340 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 124 ~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~- 197 (254)
T PRK14273 124 DEIVEQSLKKSALWNEVKDKLNTNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK- 197 (254)
T ss_pred HHHHHHHHHHhCCchhhHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-
Confidence 35678888888873 3455554 4599999999999999999999999999999999999999999999996
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++.|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 198 ~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 198 ESYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4789999999987 68889999999999999999987654
No 166
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=9.2e-21 Score=184.17 Aligned_cols=101 Identities=27% Similarity=0.505 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
.+++.++++.+||.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 193 (221)
T TIGR02211 119 KERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193 (221)
T ss_pred HHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999998877777654 9999999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v 111 (525)
|||+++|++. .+. .+|++++|++|+++
T Consensus 194 tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 194 SFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred EEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999986 454 58999999999875
No 167
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=8.7e-21 Score=190.15 Aligned_cols=110 Identities=25% Similarity=0.377 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVL 74 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l 74 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 123 GEIAWQALALAGATALVGRDVTT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred HHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 35688899999998877777654 9999999999999999 599999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 75 QRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 75 ~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++++++ |+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 198 ~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 198 RRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999876 899999999986 68889999999999999999987554
No 168
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=1.1e-20 Score=189.29 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
++++++++.+|+. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 129 ~~~~~~l~~~gl~~~~~~~~~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 129 ARASEMLRAVDLDDSVLDKRPP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred HHHHHHHHHcCCChhHhhCCCc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 4688999999996 46676655 49999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. .+.+++|++++|++|++++.|++++.
T Consensus 204 tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 204 ACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDK 239 (268)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhc
Confidence 9999999986 68889999999999999999988765
No 169
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=1.3e-20 Score=186.38 Aligned_cols=111 Identities=24% Similarity=0.291 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+++. +..++.+. +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~ 196 (248)
T PRK09580 121 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR 196 (248)
T ss_pred HHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 34667888888885 44555442 25999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEeCCCchHHHhh-cCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGL-LDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~-~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 197 tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 197 SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred EEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999986 46665 899999999999999987744
No 170
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=2.5e-21 Score=197.06 Aligned_cols=112 Identities=27% Similarity=0.475 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
+++++|++.++.++|++.+++.+. +|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.+ .
T Consensus 112 ~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~ 186 (352)
T COG3842 112 EIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL 186 (352)
T ss_pred HHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc
Confidence 355799999999999998888764 5999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|.|++|||.. |...++|||.+|++|++...|+|+++
T Consensus 187 giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 187 GITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred CCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHH
Confidence 999999999976 79999999999999999999999886
No 171
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.7e-21 Score=187.58 Aligned_cols=109 Identities=23% Similarity=0.406 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 120 QERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK 194 (250)
T ss_pred HHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 356788999999854 345554 45999999999999999999999999999999999999999999999964
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 195 -~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 195 -DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred -CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 899999999987 67889999999999999999987654
No 172
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=9.3e-21 Score=206.40 Aligned_cols=110 Identities=23% Similarity=0.379 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 192 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSSAGS-----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG 192 (510)
T ss_pred HHHHHHHHHHcCCCccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 46788999999999888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|++++.
T Consensus 193 iiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 193 IVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999986 58889999999999999999988765
No 173
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.7e-21 Score=187.89 Aligned_cols=109 Identities=21% Similarity=0.390 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.++|.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14242 123 AERVERSLRHAALWDEVKDRLHESA-----LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA 197 (253)
T ss_pred HHHHHHHHHHcCCchhhhHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc
Confidence 356788899999854 234444 45999999999999999999999999999999999999999999999954
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 198 -~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 198 -RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred -CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 789999999986 68889999999999999999886543
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.1e-20 Score=189.60 Aligned_cols=109 Identities=24% Similarity=0.440 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ ++
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 194 (271)
T PRK13632 120 KDIIDDLAKKVGMEDYLDKEPQN-----LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK 194 (271)
T ss_pred HHHHHHHHHHcCCHHHhhCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 34678899999999888887754 9999999999999999999999999999999999999999999999876 58
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++. .+|++++|++|+++..|+++++
T Consensus 195 tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 195 TLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred EEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHHH
Confidence 9999999987 454 7999999999999999987554
No 175
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=189.17 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
.++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 192 (277)
T PRK13642 118 IKRVDEALLAVNMLDFKTREPA-----RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192 (277)
T ss_pred HHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3567899999999888777765 49999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++.. +. .+|++++|++|+++..|++++.
T Consensus 193 tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 193 TVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred EEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHH
Confidence 99999999874 54 6999999999999999987664
No 176
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=8.6e-21 Score=207.69 Aligned_cols=111 Identities=27% Similarity=0.457 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRN---AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~---~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
.+++++++++.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.++|+++++
T Consensus 130 ~~~~~~~~l~~~gl~~~~~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 204 (529)
T PRK15134 130 ARGEILNCLDRVGIRQAAKRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204 (529)
T ss_pred HHHHHHHHHHHCCCCChHHHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHH
Confidence 3467899999999975 34666654 999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 S-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ |.|||+++|++. .+.++||+|++|++|++++.|+++++
T Consensus 205 ~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 205 ELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred hcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 6 899999999987 57889999999999999999987654
No 177
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=184.87 Aligned_cols=110 Identities=27% Similarity=0.469 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ 182 (232)
T cd03300 108 KERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI 182 (232)
T ss_pred HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3467889999999888787765 49999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+.+|++++|++|++++.|+.++.
T Consensus 183 tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 183 TFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999986 58889999999999999999875443
No 178
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=9.7e-21 Score=206.87 Aligned_cols=112 Identities=30% Similarity=0.512 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 46789999999998888877765 999999999999999999999999999999999999999999999976 489
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPH 121 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~ 121 (525)
|||+++|++. .+.++||++++|++|++++.|++++..+
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999999986 5788999999999999999998776543
No 179
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=1.2e-20 Score=185.46 Aligned_cols=110 Identities=25% Similarity=0.465 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
.++++++++.+++.+..++.+++ |||||+||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ 182 (237)
T TIGR00968 108 KARVEELLELVQLEGLGDRYPNQ-----LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182 (237)
T ss_pred HHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999998877877655 9999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus 183 tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 183 TTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred EEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999986 68899999999999999999987654
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=9.5e-21 Score=185.26 Aligned_cols=109 Identities=26% Similarity=0.427 Sum_probs=97.1
Q ss_pred HHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 5 IRVQALIDQLG-LRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 5 ~~v~~~l~~l~-L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+.++++++.++ +.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (230)
T TIGR03410 109 KIPDEIYELFPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183 (230)
T ss_pred HHHHHHHHHHHhHHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence 34677888886 56666776654 9999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+++|++. ++.+++|+++++++|+++..|+++++
T Consensus 184 tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 184 AILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999986 68889999999999999999987665
No 181
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-20 Score=168.42 Aligned_cols=111 Identities=24% Similarity=0.459 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+.+..++|+.+.|...+|+.. -.|||||+|||+|||||+.+|++|++||||+.|||+-..+++++||+++..|
T Consensus 117 qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tg 191 (242)
T COG4161 117 QALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG 191 (242)
T ss_pred HHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999988764 4599999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
.|-++++|... ...+.+.+|+.|.+|+|++.|+.+.
T Consensus 192 itqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 192 ITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred ceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 99999999976 5778999999999999999998754
No 182
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=1.2e-20 Score=205.64 Aligned_cols=109 Identities=22% Similarity=0.365 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+||+ +..++.++. ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 455 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAART-----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVA 455 (510)
T ss_pred HHHHHHHHHcCCCCCCccCcccc-----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCE
Confidence 4688999999997 677888765 9999999999999999999999999999999999999999999999988999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 456 iIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 456 VLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred EEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999987 68899999999999999999988654
No 183
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=186.74 Aligned_cols=108 Identities=24% Similarity=0.420 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCccc----ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRNA----AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~----~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+||.+. .++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~ 197 (251)
T PRK14244 124 EIVEKSLTSVGLWEELGDRLKDSA-----FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K 197 (251)
T ss_pred HHHHHHHHHcCCCchhhhHhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c
Confidence 457788999999652 33333 4599999999999999999999999999999999999999999999985 4
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 198 ~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 198 NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 899999999987 68889999999999999999887544
No 184
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=8.1e-21 Score=191.10 Aligned_cols=113 Identities=29% Similarity=0.488 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
|++++|.++|+.+||+... -+.+|+..|||||||++||+|++.+|++++||||||.||-.-+.+|+++|++|.+ .
T Consensus 401 eR~~rv~~aL~EVGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~ 476 (534)
T COG4172 401 ERDQRVIEALEEVGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH 476 (534)
T ss_pred HHHHHHHHHHHHcCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh
Confidence 6788999999999997532 2345778999999999999999999999999999999999999999999999986 4
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|-+-++++||.. .+..+||+|++|.+|+||+.|+.+++
T Consensus 477 ~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~i 514 (534)
T COG4172 477 GLSYLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAV 514 (534)
T ss_pred CCeEEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHH
Confidence 789999999987 78999999999999999999998776
No 185
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=204.64 Aligned_cols=109 Identities=22% Similarity=0.409 Sum_probs=101.5
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+++. +..++.+++ ||||||||+.||++|+.+|++|||||||+|||+.++.+++++|++++++|.|
T Consensus 374 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 448 (501)
T PRK11288 374 ENADRFIRSLNIKTPSREQLIMN-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVA 448 (501)
T ss_pred HHHHHHHHhcCcccCCccCcccc-----CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCE
Confidence 4688999999994 678888876 9999999999999999999999999999999999999999999999988999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++||+. ++.++||++++|++|++++.|+++++
T Consensus 449 viivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 449 VLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999986 68899999999999999999988764
No 186
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=200.20 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=101.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.++|.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus 122 e~i~elLe~lgL~~~ld~~~~~-----LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TI 196 (549)
T PRK13545 122 EIIPEIIEFADIGKFIYQPVKT-----YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196 (549)
T ss_pred HHHHHHHHHcCChhHhhCCccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4577899999998888887755 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 197 IIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 197 FFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred EEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999986 688899999999999999999887653
No 187
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=210.32 Aligned_cols=110 Identities=24% Similarity=0.365 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++.+++++|++++++ |
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~~~~~-----LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWRYPHE-----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35788999999996 566777654 9999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||++||++. .+.++||+|++|++|++++.|+++++
T Consensus 515 ~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 515 IAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999987 68899999999999999999988765
No 188
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.84 E-value=2e-20 Score=182.75 Aligned_cols=103 Identities=29% Similarity=0.448 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.++|.+..++.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 198 (228)
T PRK10584 124 RNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT 198 (228)
T ss_pred HHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 45788999999998877777654 9999999999999999999999999999999999999999999999765 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEe
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~ 113 (525)
|||+++|++. .+ +.+|++++|++|+++..
T Consensus 199 tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 199 TLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred EEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999987 45 45999999999998753
No 189
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=187.48 Aligned_cols=109 Identities=23% Similarity=0.335 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 130 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~- 203 (260)
T PRK10744 130 DERVEWALTKAALWNEVKDKLHQSG-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK- 203 (260)
T ss_pred HHHHHHHHHHcCCChhhHHHHhcCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-
Confidence 35788899999984 3345544 4599999999999999999999999999999999999999999999996
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++.|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 204 ~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 204 QDYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred cCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4789999999986 58889999999999999999987554
No 190
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=1.8e-20 Score=176.49 Aligned_cols=100 Identities=35% Similarity=0.590 Sum_probs=90.6
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEE
Q 037973 9 ALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMS 87 (525)
Q Consensus 9 ~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~ 87 (525)
++++.+||.+..++.+. .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ +.|+|++
T Consensus 80 q~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 80 QALELLGLAHLADRPFN-----ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154 (180)
T ss_pred HHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 36888999877776654 49999999999999999999999999999999999999999999999876 8999999
Q ss_pred eCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 88 IHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 88 ~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
+|++. ++.+++|++++|++|++++.|
T Consensus 155 sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 155 LHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99987 678899999999999998654
No 191
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=186.56 Aligned_cols=108 Identities=22% Similarity=0.416 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.++|.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 197 (253)
T PRK14267 124 ERVEWALKKAALWDEVKDRLNDYP-----SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK- 197 (253)
T ss_pred HHHHHHHHHcCCccchhhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-
Confidence 46788899999853 344444 45999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 198 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 198 EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 689999999987 68889999999999999999987554
No 192
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=203.68 Aligned_cols=110 Identities=18% Similarity=0.327 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+++.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 186 (491)
T PRK10982 112 YRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCG 186 (491)
T ss_pred HHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 35788999999998878887765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|+++..|++++.
T Consensus 187 vii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 187 IVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999986 68889999999999999999988764
No 193
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=1.9e-20 Score=203.71 Aligned_cols=110 Identities=23% Similarity=0.448 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.++|. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 372 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 446 (501)
T PRK10762 372 QQAVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGL 446 (501)
T ss_pred HHHHHHHHHhcCCCCCCccCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCC
Confidence 35688999999995 667887765 999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 447 tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 447 SIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999986 68899999999999999999988765
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=203.62 Aligned_cols=107 Identities=22% Similarity=0.400 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++++++.+||. +..++.+++ |||||||||.||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 387 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~t 461 (510)
T PRK09700 387 RTAENQRELLALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKV 461 (510)
T ss_pred HHHHHHHHhcCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCE
Confidence 4578899999997 678888776 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
||+++|++. ++.++||++++|++|+++..++..
T Consensus 462 vi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 462 ILMVSSELP-EIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred EEEEcCCHH-HHHhhCCEEEEEECCEEEEEecCc
Confidence 999999986 688999999999999999888763
No 195
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=186.26 Aligned_cols=110 Identities=24% Similarity=0.361 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
++++.++++.+++.+ ..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 124 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~ 198 (261)
T PRK14258 124 DDIVESALKDADLWDEIKHKIHKSA-----LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198 (261)
T ss_pred HHHHHHHHHHcCCcchhhhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 346788899998854 334443 45999999999999999999999999999999999999999999999975
Q ss_pred -cCCEEEEEeCCCchHHHhhcCeEEEeeC-----CcEEEecCCCCh
Q 037973 80 -SGSIVIMSIHQPSYRILGLLDRMIFLSR-----GQTVYSGSPMNL 119 (525)
Q Consensus 80 -~g~tvi~~~H~~~~~v~~~~d~v~~l~~-----G~~v~~G~~~~~ 119 (525)
+|+|||+++|++. ++.++||+|++|++ |++++.|+++++
T Consensus 199 ~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 243 (261)
T PRK14258 199 RSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKI 243 (261)
T ss_pred hCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence 5899999999986 68999999999999 999999988765
No 196
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=184.99 Aligned_cols=108 Identities=27% Similarity=0.403 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.++|.+ ..+.. ++.||||||||++||++|+++|++++|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~- 190 (246)
T PRK14269 117 ALVVDCLQKVGLFEEVKDKLKQN-----ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH- 190 (246)
T ss_pred HHHHHHHHHcCCChhhhHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence 46788999999953 23443 356999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|+|+++|++. ++.+.+|++++|++|+++..|++.+.
T Consensus 191 ~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 191 NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 899999999986 58889999999999999999986554
No 197
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=1.5e-20 Score=205.67 Aligned_cols=110 Identities=28% Similarity=0.475 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.+||. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |
T Consensus 402 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 476 (529)
T PRK15134 402 EQQVIAVMEEVGLDPETRHRYPAE-----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476 (529)
T ss_pred HHHHHHHHHHcCCCHHHHhcCCcc-----CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC
Confidence 45788999999997 467777655 9999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. .+.++||++++|++|+++..|+++++
T Consensus 477 ~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 477 LAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERV 513 (529)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHH
Confidence 99999999986 68889999999999999999987654
No 198
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=186.19 Aligned_cols=108 Identities=21% Similarity=0.381 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 130 ~~~~~~l~~~~l~~~~~~~l~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 203 (259)
T PRK14274 130 EIVEKSLKDVALWDEVKDRLHTQA-----LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE- 203 (259)
T ss_pred HHHHHHHHHcCCchhhhhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 46778899999853 234444 45999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|+|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 204 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 204 KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 789999999986 68889999999999999999987654
No 199
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=185.18 Aligned_cols=109 Identities=20% Similarity=0.324 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.++|. +..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 121 DKIVEWALKKAALWDEVKDDLKKSA-----LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred HHHHHHHHHHcCCchhhhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 35677889999874 2344444 45999999999999999999999999999999999999999999999976
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 196 -~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 196 -EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred -CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 589999999986 68899999999999999999987654
No 200
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=186.91 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+||.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 137 ~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~ 211 (267)
T PRK14235 137 DEIVETSLRKAGLWEEVKDRLHEPG-----TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ 211 (267)
T ss_pred HHHHHHHHHHcCCchhhhHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc
Confidence 356788999999964 234444 45999999999999999999999999999999999999999999999975
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. .+.+++|++++|++|+++..|+++++
T Consensus 212 -~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 212 -NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred -CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 689999999986 68889999999999999999976554
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=3e-20 Score=185.35 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=98.8
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
+.++++++.++|.+..++.++. ||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+||
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti 196 (264)
T PRK13546 122 AMTPKIIEFSELGEFIYQPVKK-----YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196 (264)
T ss_pred HHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3466788888998877777654 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 197 IiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 197 FFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred EEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 99999976 68889999999999999999987655
No 202
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=9.1e-21 Score=179.74 Aligned_cols=114 Identities=28% Similarity=0.520 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
|.+++++.+|+++++......+|.+ ||.|++|++.+-.+++++|++++||||+|||||.+++.+.+.+.+++++|
T Consensus 106 e~~~~~~~wLer~~i~~~~~~kIk~-----LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 106 EIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred HHHHHHHHHHHhccccccccchHHH-----hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 4567889999999999988888865 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPH 121 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~ 121 (525)
.|||+++|.+. .+.++||++++|++|+.|.+|+..++.+
T Consensus 181 atIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 181 ATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999997 6999999999999999999999988765
No 203
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=3.1e-20 Score=202.00 Aligned_cols=110 Identities=22% Similarity=0.412 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRNAA-KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.++|.+.. ++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 192 (500)
T TIGR02633 118 YLRAKNLLRELQLDADNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192 (500)
T ss_pred HHHHHHHHHHcCCCCCcccCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 35688999999998654 455655 999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||+|++|++|+++..|++.+.
T Consensus 193 tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 193 ACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred EEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999986 68889999999999999999988654
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-20 Score=208.64 Aligned_cols=110 Identities=25% Similarity=0.428 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 4 KIRVQALIDQLGLRN---AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~---~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++++++++.+||.+ ..++.+. .|||||||||+||++|+.+|++|||||||+|||+.++.++.++|++++++
T Consensus 143 ~~~~~~~l~~~gL~~~~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 143 MVEAKRMLDQVRIPEAQTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HHHHHHHHHHCCCCChhhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 467889999999953 4566655 49999999999999999999999999999999999999999999999865
Q ss_pred -CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 -GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 -g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. .+.++||+|++|++|+++..|+++++
T Consensus 218 ~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 218 MSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred cCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHh
Confidence 899999999986 68899999999999999999987654
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=184.55 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14239 123 EAVEKSLKGASIWDEVKDRLHDSA-----LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD- 196 (252)
T ss_pred HHHHHHHHHcCCchhHHHHHhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-
Confidence 45677888888743 334444 45999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+.+|++++|++|++++.|+++++
T Consensus 197 ~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 197 DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 689999999986 68889999999999999999987654
No 206
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.83 E-value=2.8e-20 Score=184.44 Aligned_cols=108 Identities=22% Similarity=0.428 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
+++.++++.+||.+..++.+.. ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPMQK-----LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred HHHHHHHHHcCChHHHhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 5678899999999888877654 9999999999999999999999999999999999999999999999876 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.+.+|++++|++ +++..|+++++
T Consensus 174 iiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 174 VLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred EEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 999999987 68889999999965 78899887654
No 207
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.8e-20 Score=185.21 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+||. +..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 196 (258)
T PRK14241 122 DELVEKSLRGANLWNEVKDRLDKPGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ 196 (258)
T ss_pred HHHHHHHHHHcCCchhhhhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 34678889999984 34455544 5999999999999999999999999999999999999999999999964
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEee------CCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLS------RGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~------~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|+ +|++++.|++++.
T Consensus 197 -~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 197 -DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred -CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 689999999986 6888999999997 7999999987654
No 208
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.9e-20 Score=186.17 Aligned_cols=108 Identities=23% Similarity=0.378 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.++++.+++. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 139 ~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 212 (268)
T PRK14248 139 EIVEESLTKAALWDEVKDRLHSSAL-----SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE- 212 (268)
T ss_pred HHHHHHHHHcCCCcchHHHHhcCcc-----cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-
Confidence 4567788888884 33455554 5999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.++||++++|++|++++.|++++.
T Consensus 213 ~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 213 EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 689999999986 68889999999999999999986554
No 209
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.3e-20 Score=184.02 Aligned_cols=108 Identities=22% Similarity=0.393 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14256 123 EIVESSLKRVALWDEVKDRLKSNA-----MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE- 196 (252)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCc-----CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-
Confidence 56788899999864 234444 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.++||++++|++|+++..|++++.
T Consensus 197 ~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 197 KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 589999999986 68889999999999999999987654
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=2.6e-20 Score=203.47 Aligned_cols=110 Identities=23% Similarity=0.436 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA 78 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 78 (525)
+++++++++.+||.+ ..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 400 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~ 474 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKAEEILDKYPDE-----LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474 (520)
T ss_pred HHHHHHHHHhCCCCCccchhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 357888999999975 45666654 99999999999999999999999999999999999999999999998
Q ss_pred Hc-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 79 QS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 79 ~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++ |.|||+++|++. .+.++||++++|++|+++..|+++++
T Consensus 475 ~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 475 EEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 65 899999999987 68889999999999999999987654
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.8e-20 Score=183.18 Aligned_cols=108 Identities=22% Similarity=0.384 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++++.++.+++.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 193 (249)
T PRK14253 120 EVVERSLRGAALWDEVKDRLKSHA-----FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK- 193 (249)
T ss_pred HHHHHHHHHcCCchhhhHHhhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-
Confidence 45677888888753 334444 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 194 ~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 194 NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 589999999986 68899999999999999999886543
No 212
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=4.8e-20 Score=200.47 Aligned_cols=109 Identities=26% Similarity=0.469 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.++|.+ ..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 380 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 454 (500)
T TIGR02633 380 LQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454 (500)
T ss_pred HHHHHHHHHhcCccCCCccCcccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCC
Confidence 356889999999974 56777765 999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
|||+++|++. ++.++||++++|++|+++..++..+
T Consensus 455 tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 455 AIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999986 6889999999999999998876543
No 213
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.1e-20 Score=183.13 Aligned_cols=108 Identities=22% Similarity=0.429 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 194 (250)
T PRK14262 121 RIVEESLKKAALWDEVKSELNKPG-----TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE- 194 (250)
T ss_pred HHHHHHHHHcCCCchhHHHHhCCh-----hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-
Confidence 45777888888854 234444 46999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|+|+++|++. .+.+++|++++|++|+++..|+++++
T Consensus 195 ~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 195 NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 789999999986 58889999999999999999987654
No 214
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=182.49 Aligned_cols=109 Identities=25% Similarity=0.432 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+++. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 120 DEIVEKSLKGAALWDEVKDRLKKSAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred HHHHHHHHHHcCCchhhHHHHhcCCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc
Confidence 45677888888874 23455444 5999999999999999999999999999999999999999999999964
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. .+.+++|++++|++|+++..|++++.
T Consensus 195 -~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 195 -DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred -CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 789999999976 68889999999999999999886554
No 215
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.2e-20 Score=171.92 Aligned_cols=112 Identities=27% Similarity=0.434 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH------DPILLFLDEPTSGLDSTSAYMVVKVLQ 75 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~------~p~illlDEPtsgLD~~~~~~i~~~l~ 75 (525)
+..+.++++|+..++++.+.+.+- .|||||||||.+||.|++ ++++||||||||.||...+..++++.+
T Consensus 111 e~~~i~~~ala~~d~~~la~R~y~-----~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 111 EDERIAAQALAATDLSGLAGRDYR-----TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred hhHHHHHHHHHHcChhhhhccchh-----hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 344568889999999999887764 499999999999999976 456999999999999999999999999
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+++++|..|+++.||.+ -...+||||++|++||++..|+|.++
T Consensus 186 ~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 186 QLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHh
Confidence 99999999999999998 47789999999999999999999876
No 216
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=3.3e-20 Score=182.24 Aligned_cols=88 Identities=36% Similarity=0.616 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++ +.||++++|++|
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~G 212 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEKG 212 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 45699999999999999999999999999999999999999999999997 4899999999987 45 469999999999
Q ss_pred cEEEecCCCCh
Q 037973 109 QTVYSGSPMNL 119 (525)
Q Consensus 109 ~~v~~G~~~~~ 119 (525)
++++.|+++++
T Consensus 213 ~i~~~~~~~~~ 223 (237)
T cd03252 213 RIVEQGSHDEL 223 (237)
T ss_pred EEEEEcCHHHH
Confidence 99999987554
No 217
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=2.9e-20 Score=223.49 Aligned_cols=115 Identities=29% Similarity=0.451 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+.+|+.+++ ||||||||++||+||+.+|+|++|||||+|||+.++..+.+.|++++++|+|
T Consensus 2048 ~~~v~~lLe~lgL~~~~dk~~~~-----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2048 EKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122 (2272)
T ss_pred HHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788899999999999998876 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHH
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFD 124 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~ 124 (525)
||+++|++. ++.++||||++|++|++++.|+++++++.+.
T Consensus 2123 IILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2123 VVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999987 7999999999999999999999998876554
No 218
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.6e-20 Score=186.34 Aligned_cols=108 Identities=22% Similarity=0.379 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~- 230 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG- 230 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-
Confidence 4677888888874 3445544 45999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 231 ~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 231 SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 589999999987 68889999999999999999987654
No 219
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-20 Score=192.93 Aligned_cols=113 Identities=35% Similarity=0.585 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++++++||++.. |+.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 46788899999998743 345665 4567999999999999999999999999999999999999999999988
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
-++ |+|+|++||+... .+.||+|++|++|+++++|+..++.
T Consensus 520 ~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 520 HAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred Hhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhh
Confidence 664 9999999999874 5679999999999999999988764
No 220
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.9e-20 Score=183.81 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++++.++++.++|.+..+... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|
T Consensus 137 ~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t 214 (267)
T PRK14237 137 DEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYT 214 (267)
T ss_pred HHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCE
Confidence 356788899999853221111 12345699999999999999999999999999999999999999999999995 4789
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 215 iii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 215 IIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred EEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999987 68899999999999999999987654
No 221
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=3.5e-20 Score=180.24 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 2 KKKIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++.++|+.+||.. ..+ .+++++|||||||+.|||||+.+|+++++|||+|.||...+.+++++|+++.++
T Consensus 84 ~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 84 ERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred HHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 45678999999999864 333 356789999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 -GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 -g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|.|.++++||.+ .+..++|||.+|..|++|..|+.+++
T Consensus 159 ~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 159 LGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred hCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHH
Confidence 899999999987 68999999999999999999998876
No 222
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=5.8e-20 Score=178.44 Aligned_cols=107 Identities=31% Similarity=0.543 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAAKTVIG------DEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA 78 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg------~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 78 (525)
+++.++++.+++.+..++... ...+..||||||||+.||++++.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 467788899999877666431 11245799999999999999999999999999999999999999999999997
Q ss_pred HcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 79 QSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 79 ~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
++ .|||+++|++. .+ +++|++++|++|++++.|
T Consensus 188 ~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 188 GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 65 89999999986 44 799999999999998764
No 223
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.5e-20 Score=182.33 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.++|.+ ..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +
T Consensus 122 ~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~ 195 (251)
T PRK14249 122 EVVEKSLRQAALWDEVKDNLHKS-----GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q 195 (251)
T ss_pred HHHHHHHHHhCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c
Confidence 45677788888753 23444 44599999999999999999999999999999999999999999999985 6
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus 196 ~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 196 NYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred CCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 899999999987 68889999999999999999987654
No 224
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.9e-20 Score=184.30 Aligned_cols=108 Identities=25% Similarity=0.379 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~- 216 (272)
T PRK14236 143 EAVERSLRGAALWDEVKDRLHENA-----FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS- 216 (272)
T ss_pred HHHHHHHHHcCCChhHHHHhhCCc-----ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 46788889988853 334443 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus 217 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 217 KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence 789999999986 58889999999999999999987554
No 225
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.2e-20 Score=181.99 Aligned_cols=108 Identities=25% Similarity=0.390 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 123 ~~~~~~l~~~~l~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14272 123 EVAERSLRGAALWDEVKDRLKTPAT-----GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK- 196 (252)
T ss_pred HHHHHHHHHcCcchhhhhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-
Confidence 3456667777653 34455544 5999999999999999999999999999999999999999999999964
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|+|+++|++. .+.++||++++|++|++++.|++++.
T Consensus 197 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 197 VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 799999999987 68889999999999999999987654
No 226
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6e-20 Score=183.97 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 129 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~- 202 (269)
T PRK14259 129 ELVERSLRKAAVWDECKDKLNESG-----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK- 202 (269)
T ss_pred HHHHHHHHHhCCcchhhhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 4567788888774 3344444 45999999999999999999999999999999999999999999999964
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeC-----------CcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSR-----------GQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~-----------G~~v~~G~~~~~ 119 (525)
+.|||+++|++. ++.++||++++|++ |++++.|+++++
T Consensus 203 ~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 203 NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 789999999986 68899999999996 568999987665
No 227
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.6e-20 Score=198.95 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 192 (501)
T PRK11288 118 NYEAREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV 192 (501)
T ss_pred HHHHHHHHHHcCCCCCcCCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788999999998777777655 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSP 116 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~ 116 (525)
||+++|++. ++.++||++++|++|+++..++.
T Consensus 193 iiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 193 ILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 999999987 68889999999999999887654
No 228
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.1e-20 Score=181.98 Aligned_cols=108 Identities=25% Similarity=0.404 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~- 195 (251)
T PRK14251 122 QRVEESLKQAAIWKETKDNLDRNA-----QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH- 195 (251)
T ss_pred HHHHHHHHHcCCCcchHHHhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-
Confidence 4677889999984 2334444 45999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus 196 ~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 196 QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 689999999987 58889999999999999999887554
No 229
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.2e-20 Score=180.13 Aligned_cols=110 Identities=28% Similarity=0.496 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-C
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG-S 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~ 82 (525)
....+++.+.||++|..++...+ |||||||||+|||||+++|++|+||||.+.||-....+++-.|.+|.++- .
T Consensus 106 ~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 35688999999999999988766 99999999999999999999999999999999999999999999999874 4
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+.++|.+. |+.+++|+|++|++|++..+|+.+++
T Consensus 181 PIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 181 PILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred CEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHH
Confidence 5889999986 89999999999999999999998765
No 230
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=1.3e-19 Score=176.91 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=89.6
Q ss_pred HHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 8 QALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 8 ~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
.+.++.++|.+ ..+..+. .||||||||++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 118 ~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 56789999976 3566654 49999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEe------eCCcEEEec
Q 037973 85 IMSIHQPSYRILGLLDRMIFL------SRGQTVYSG 114 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G 114 (525)
|+++|++. ++ +.||++++| ++|+++++|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999986 44 689999999 899999876
No 231
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.3e-20 Score=182.32 Aligned_cols=108 Identities=23% Similarity=0.367 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 125 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~- 198 (259)
T PRK14260 125 EIVESALKGAALWQEVKDKLNKSA-----LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS- 198 (259)
T ss_pred HHHHHHHHHcCCcchhhhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 4677888888884 3344443 46999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEee-----CCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLS-----RGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~-----~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+++|++++|+ +|++++.|+++++
T Consensus 199 ~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 199 ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 689999999987 6889999999998 5999999988765
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.8e-20 Score=183.20 Aligned_cols=108 Identities=24% Similarity=0.347 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+.+++.++.+++. +..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 209 (274)
T PRK14265 136 ELVEDSLRRAAIWEEVKDKLKEKG-----TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE- 209 (274)
T ss_pred HHHHHHHHHcccchhhHHHhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-
Confidence 3456678887774 2334443 45999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEee---------CCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLS---------RGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~---------~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. ++.+++|++++|+ +|++++.|+++++
T Consensus 210 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 210 QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 689999999987 6889999999998 7999999998765
No 233
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.8e-20 Score=171.16 Aligned_cols=113 Identities=26% Similarity=0.478 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
|.+..+++.++.++|++.+|+.+.. ||||||||.-||+.++++.+.++||||.++||-..+.++|+.|++++++
T Consensus 111 eD~~~I~~aieyl~L~~l~dryLd~-----LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el 185 (252)
T COG4604 111 EDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185 (252)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHh-----cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHh
Confidence 5677899999999999999998865 9999999999999999999999999999999999999999999999986
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|+||+++.||.+ ....+.|+|+-|++|+++..|+|+++.
T Consensus 186 ~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 186 GKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred CCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhc
Confidence 999999999987 467789999999999999999999874
No 234
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.5e-20 Score=182.39 Aligned_cols=108 Identities=22% Similarity=0.335 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 199 (264)
T PRK14243 126 ELVERSLRQAALWDEVKDKLKQSG-----LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE- 199 (264)
T ss_pred HHHHHHHHHhCchhhHHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-
Confidence 45677788888743 234443 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEee---------CCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLS---------RGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~---------~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.++||++++|+ +|++++.|+++++
T Consensus 200 ~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 200 QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 589999999986 6899999999998 7999999987665
No 235
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.2e-20 Score=180.81 Aligned_cols=108 Identities=22% Similarity=0.353 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.+.++.+++. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 123 ~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14255 123 EAVETSLKQAAIWDEVKDHLHESA-----LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD- 196 (252)
T ss_pred HHHHHHHHHcCCccchhhHHhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-
Confidence 3566677888764 2334444 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|+|+++|++. ++.+.+|+|++|++|+++..|++.+.
T Consensus 197 ~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 197 QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 589999999986 68889999999999999999887654
No 236
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.7e-20 Score=181.12 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 124 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~- 197 (253)
T PRK14261 124 TIVEKSLKGAALWDEVKDRLHDSA-----LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK- 197 (253)
T ss_pred HHHHHHHHHhcCchhhHHHhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-
Confidence 46778888888743 234444 45999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|||+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus 198 ~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 198 EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 589999999986 58889999999999999999987654
No 237
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=186.80 Aligned_cols=111 Identities=22% Similarity=0.394 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 85 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 85 (525)
.++++++.++|.+..++.++ +....||||||||++||+||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|
T Consensus 201 ~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii 278 (329)
T PRK14257 201 IVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSII 278 (329)
T ss_pred HHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEE
Confidence 36778888888543333343 24456999999999999999999999999999999999999999999999875 69999
Q ss_pred EEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 86 MSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+++|++. .+.+++|+|++|++|+++..|++.++
T Consensus 279 ~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 279 IVTHSMA-QAQRISDETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999986 58888999999999999999998776
No 238
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=5e-19 Score=200.53 Aligned_cols=102 Identities=30% Similarity=0.549 Sum_probs=91.5
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH
Q 037973 15 GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR 94 (525)
Q Consensus 15 ~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 94 (525)
.|.+-.||.+|+.++. ||||||||++|||+|+.||+||+||||||+||+++...|.+.|++. .+|+|.|+++|+.+ .
T Consensus 474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-t 550 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-T 550 (1228)
T ss_pred hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-h
Confidence 3555678999985554 9999999999999999999999999999999999999999999885 46899999999987 4
Q ss_pred HHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 95 ILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 95 v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+.+ +|+|++|++|++|+.|+++|+.
T Consensus 551 Irn-aD~I~v~~~G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 551 IRN-ADKIAVMEEGKIVEQGTHDELI 575 (1228)
T ss_pred hhc-cCEEEEEECCEEEEecCHHHHH
Confidence 665 9999999999999999998875
No 239
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=1.6e-19 Score=178.30 Aligned_cols=101 Identities=27% Similarity=0.368 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
..++++++.++|.+..++.+++ ||||||||++||++|+.+|++++|||||++||+.++..+.+.|++++++ |+|
T Consensus 94 ~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 94 YFKTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred HHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 3467899999998888877765 9999999999999999999999999999999999999999999999864 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEE
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v 111 (525)
||+++|++. .+..+||++++|+++..+
T Consensus 169 iiivsHd~~-~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 169 AFVVEHDII-MIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEcCCCee
Confidence 999999986 688899999999765433
No 240
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=196.99 Aligned_cols=108 Identities=28% Similarity=0.506 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+++. +..++.+++ ||||||||+.||++++.+|+||+|||||+|||+.++..+++.|++++++|.
T Consensus 368 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~ 442 (491)
T PRK10982 368 KSDTQWVIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK 442 (491)
T ss_pred HHHHHHHHHhcCccCCCccccccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCC
Confidence 34678899999995 456777765 999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
|||+++|++. ++.++||++++|++|+++..+++.
T Consensus 443 tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 443 GIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999987 688999999999999999877664
No 241
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=180.45 Aligned_cols=113 Identities=24% Similarity=0.384 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..+...+ ..++.||||||||++||++|+++|++|+|||||+|||+.++.++.+.|++++ +++|
T Consensus 123 ~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~t 200 (261)
T PRK14263 123 GDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYT 200 (261)
T ss_pred HHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCe
Confidence 3578889999998653222221 2345699999999999999999999999999999999999999999999996 4789
Q ss_pred EEEEeCCCchHHHhhcCeEEEee--------CCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLS--------RGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~--------~G~~v~~G~~~~~ 119 (525)
+|+++|++. ++.+++|++++|+ +|+++..|+++++
T Consensus 201 ii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 201 IALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 999999987 6889999999996 8999999987654
No 242
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=183.55 Aligned_cols=109 Identities=23% Similarity=0.406 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.++|.+ ..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~ 228 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 456888999999853 345544 45999999999999999999999999999999999999999999999976
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEE-EeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMI-FLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~-~l~~G~~v~~G~~~~~ 119 (525)
+ .|||+++|++. .+.+++|+++ +|++|+++..|++.+.
T Consensus 229 ~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 229 E-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred C-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 4 79999999986 6888999975 6799999999886543
No 243
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=182.22 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
+++.++++.++|.+..+... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.||
T Consensus 138 ~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~ti 215 (276)
T PRK14271 138 GVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTV 215 (276)
T ss_pred HHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 35677889999864321111 112345999999999999999999999999999999999999999999999976 4899
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus 216 iivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 216 IIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999986 68899999999999999999987654
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=8.4e-20 Score=178.97 Aligned_cols=103 Identities=32% Similarity=0.500 Sum_probs=86.9
Q ss_pred HHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 037973 9 ALIDQL--GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM 86 (525)
Q Consensus 9 ~~l~~l--~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 86 (525)
+.++.+ ++.+..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+
T Consensus 119 ~~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~ 192 (234)
T cd03251 119 EFIMELPEGYDTVIGERG-----VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFV 192 (234)
T ss_pred HHHHhcccCcceeeccCC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 344444 4544444443 45999999999999999999999999999999999999999999999964 899999
Q ss_pred EeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 87 SIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 87 ~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|++. ++.. ||++++|++|+++..|+++++
T Consensus 193 ~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 193 IAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred EecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 999986 4654 999999999999998876554
No 245
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=180.01 Aligned_cols=109 Identities=25% Similarity=0.448 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN----AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~----~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.+++.+ ..+..+ +.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++
T Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~ 201 (257)
T PRK14246 127 KKIVEECLRKVGLWKEVYDRLNSPA-----SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201 (257)
T ss_pred HHHHHHHHHHcCCCccchhhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc
Confidence 356788999999963 334443 45999999999999999999999999999999999999999999999965
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. .+.++||++++|++|+++..|++++.
T Consensus 202 -~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 202 -EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred -CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 689999999976 68889999999999999999987654
No 246
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=179.24 Aligned_cols=112 Identities=22% Similarity=0.416 Sum_probs=95.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.++|.+...... +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.||
T Consensus 121 ~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~ti 198 (250)
T PRK14266 121 ERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTI 198 (250)
T ss_pred HHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeE
Confidence 56778889998854211111 223345999999999999999999999999999999999999999999999964 7899
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus 199 ii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 199 VIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred EEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999987 68899999999999999999987654
No 247
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=181.64 Aligned_cols=107 Identities=21% Similarity=0.367 Sum_probs=91.6
Q ss_pred HHHHHHHHcCC----cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 6 RVQALIDQLGL----RNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 6 ~v~~~l~~l~L----~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
.+.+.++.+++ .+..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~-----~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 216 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNA-----YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-D 216 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-C
Confidence 45666666654 33334444 45999999999999999999999999999999999999999999999976 7
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. .+.+++|++++|++|+++..|+++++
T Consensus 217 ~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 217 YSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred CEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999986 58889999999999999999986554
No 248
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.81 E-value=1.6e-19 Score=173.00 Aligned_cols=87 Identities=33% Similarity=0.485 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHh-hcCeEEEeeCC
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILG-LLDRMIFLSRG 108 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~-~~d~v~~l~~G 108 (525)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ ++|++++|++|
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G 181 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDG 181 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999999878899999999987 5666 79999999999
Q ss_pred cEEEecCCC
Q 037973 109 QTVYSGSPM 117 (525)
Q Consensus 109 ~~v~~G~~~ 117 (525)
+++..|+.+
T Consensus 182 ~i~~~~~~~ 190 (200)
T cd03217 182 RIVKSGDKE 190 (200)
T ss_pred EEEEEccHH
Confidence 999999443
No 249
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=1.7e-19 Score=175.36 Aligned_cols=100 Identities=32% Similarity=0.619 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +++
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 193 (220)
T TIGR02982 119 RERARAMLEAVGLGDHLDYYPH-----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC 193 (220)
T ss_pred HHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999887777765 4999999999999999999999999999999999999999999999986 489
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|+|+++|++. +.+++|++++|++|++
T Consensus 194 tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 194 TILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 9999999985 4579999999999986
No 250
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=1.3e-19 Score=200.82 Aligned_cols=112 Identities=28% Similarity=0.426 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++.+ -.||.+|+. ...||||||||++|||||+++|+||+||||||+||+.+...+.+.|++
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 456777777777654 347888874 345999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++
T Consensus 531 ~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 531 AS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred Hh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHH
Confidence 85 5899999999985 4567999999999999999986655
No 251
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=1.7e-19 Score=177.24 Aligned_cols=88 Identities=34% Similarity=0.520 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|
T Consensus 137 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G 213 (238)
T cd03249 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNG 213 (238)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECC
Confidence 46799999999999999999999999999999999999999999999997 7999999999987 455 79999999999
Q ss_pred cEEEecCCCCh
Q 037973 109 QTVYSGSPMNL 119 (525)
Q Consensus 109 ~~v~~G~~~~~ 119 (525)
++++.|+.++.
T Consensus 214 ~i~~~~~~~~~ 224 (238)
T cd03249 214 QVVEQGTHDEL 224 (238)
T ss_pred EEEEeCCHHHH
Confidence 99999876554
No 252
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=174.26 Aligned_cols=114 Identities=30% Similarity=0.485 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++.+.+.+.|+|+...+.++. .||-|||.|+.+|.+|+++|+||||||||-|||..++..+.+.|++..+ .+.
T Consensus 134 ~~r~~~l~eiLdl~~~lk~~vr-----~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~a 208 (325)
T COG4586 134 AERLDFLTEILDLEGFLKWPVR-----KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208 (325)
T ss_pred HHHHHHHHHHhcchhhhhhhhh-----hccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCc
Confidence 5788999999999988888875 4999999999999999999999999999999999999999999999986 588
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHH
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFF 123 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~ 123 (525)
||+.+||..+ ++..+||||++|+.|+++|.|+.+++.+-|
T Consensus 209 TVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 209 TVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred eEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999987 699999999999999999999988775433
No 253
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.8e-19 Score=171.99 Aligned_cols=108 Identities=31% Similarity=0.502 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
+..+++..+++.+|+.+.+|+..++ ||-|||||+-|||||+.+|.+||||||++|||...++.+++.|.+++..
T Consensus 147 ~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~ 221 (257)
T COG1119 147 EDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP 221 (257)
T ss_pred HHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCC
Confidence 3456888999999999999999987 9999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 81 -GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 81 -g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
+.++|+++|++. ++...|++++++++|+++++|.
T Consensus 222 ~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 222 GAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 788999999986 7999999999999999999874
No 254
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=4.2e-19 Score=175.93 Aligned_cols=105 Identities=31% Similarity=0.457 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHD---PILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.++++.+||.+ ..+..+. .||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~-----~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPAT-----TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccc-----cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 46778899999987 4566654 4999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCC
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSP 116 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~ 116 (525)
|.|+|+++|++. .+ +.+|+++.| ++|++++.|++
T Consensus 222 g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 222 GNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999986 34 579999999 78999999975
No 255
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-19 Score=183.02 Aligned_cols=113 Identities=23% Similarity=0.424 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+++.+..+... +..++.||||||||++||++|+++|+||||||||+|||+.++..+.+.|++++++ .|
T Consensus 174 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~t 251 (305)
T PRK14264 174 DELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YT 251 (305)
T ss_pred HHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CE
Confidence 356788899998853221111 2234569999999999999999999999999999999999999999999999774 89
Q ss_pred EEEEeCCCchHHHhhcCeE-EEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRM-IFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v-~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+.+++|++ ++|++|++++.|+++++
T Consensus 252 iiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 252 VVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 999999986 588899997 57899999999987554
No 256
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=2e-19 Score=162.05 Aligned_cols=102 Identities=27% Similarity=0.488 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+.+..++|+.+||.+..+-+. ++|||||+|||+||||++..|+|||.||||.+||..+..+|.+++-.+.++ |.
T Consensus 124 ~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~ 198 (228)
T COG4181 124 RAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198 (228)
T ss_pred HHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCc
Confidence 356888999999988766554 569999999999999999999999999999999999999999999999874 89
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEE
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVY 112 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~ 112 (525)
|.+++||||. +..-|||.+-|..|+++.
T Consensus 199 TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 199 TLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred eEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999985 677899999999999874
No 257
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.6e-19 Score=170.34 Aligned_cols=84 Identities=49% Similarity=0.902 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC-Cc
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR-GQ 109 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~-G~ 109 (525)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 59999999999999999999999999999999999999999999999888999999999987457889999999999 99
Q ss_pred EEEec
Q 037973 110 TVYSG 114 (525)
Q Consensus 110 ~v~~G 114 (525)
+++.|
T Consensus 188 i~~~g 192 (192)
T cd03232 188 TVYFG 192 (192)
T ss_pred EEeCC
Confidence 99876
No 258
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.80 E-value=3e-19 Score=170.20 Aligned_cols=84 Identities=55% Similarity=0.982 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 59999999999999999999999999999999999999999999999878999999999987568889999999999999
Q ss_pred EEec
Q 037973 111 VYSG 114 (525)
Q Consensus 111 v~~G 114 (525)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8764
No 259
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.80 E-value=2.3e-19 Score=179.82 Aligned_cols=114 Identities=20% Similarity=0.354 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCcccccccccC------CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGD------EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~------~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
.+++.+.++.+||.+..+..++. +..+.||||||||+.+|++|+.+|+||+|||||+|||+.+...+.+.|+++
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 35678889999998766655432 123559999999999999999999999999999999999999999999987
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
. +++|||+++|++. .+. .||+|++|++|++++.|+++++.
T Consensus 185 ~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 185 F-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred c-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHh
Confidence 4 5899999999985 455 59999999999999999987763
No 260
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=4.9e-19 Score=165.67 Aligned_cols=99 Identities=24% Similarity=0.435 Sum_probs=85.7
Q ss_pred HHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 037973 9 ALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHD--PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 85 (525)
Q Consensus 9 ~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 85 (525)
+.++.++|.. ..+..++ .||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|++++++|+|||
T Consensus 69 ~~l~~~~L~~~~~~~~~~-----~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvI 143 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLS-----TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143 (176)
T ss_pred HHHHHcCCCccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 5788999875 3566554 5999999999999999999 999999999999999999999999999987899999
Q ss_pred EEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 86 MSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
+++|++. .+ +.+|++++|.+|+....|
T Consensus 144 ivSH~~~-~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 144 LIEHNLD-VL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred EEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence 9999986 34 679999999776554433
No 261
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.80 E-value=2.8e-19 Score=171.74 Aligned_cols=95 Identities=32% Similarity=0.539 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
.++++++++.+||++..++.+.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~~-----lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 186 (206)
T TIGR03608 112 REKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186 (206)
T ss_pred HHHHHHHHHHcCchhhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 45788999999998888877654 9999999999999999999999999999999999999999999999878999
Q ss_pred EEEEeCCCchHHHhhcCeEEEe
Q 037973 84 VIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l 105 (525)
+|+++|++. . .+.+|++++|
T Consensus 187 ii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 187 IIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred EEEEeCCHH-H-HhhcCEEEeC
Confidence 999999986 3 4689999875
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=178.11 Aligned_cols=108 Identities=20% Similarity=0.382 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLR----NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~----~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++++++.+++. +..++.+ ..||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~- 209 (265)
T PRK14252 136 ERVENALRNAALWDEVKDRLGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN- 209 (265)
T ss_pred HHHHHHHHHcCCchhhhHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-
Confidence 5677888888874 2334444 45999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|||+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus 210 ~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 210 KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 689999999986 68889999999999999999987554
No 263
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.79 E-value=1.7e-18 Score=193.46 Aligned_cols=110 Identities=29% Similarity=0.495 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
.++++.++++.+||.+..|+.++. ||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 121 ~~~~~~~~l~~lgl~~~~~~~~~~-----LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~ 195 (648)
T PRK10535 121 RLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH 195 (648)
T ss_pred HHHHHHHHHHHCCChhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 345788999999999888887765 999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+++++|++. .+ +.||++++|++|++++.|++++.
T Consensus 196 tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 196 TVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred EEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999999986 34 57999999999999999988654
No 264
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.79 E-value=3.4e-19 Score=172.39 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=95.4
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 037973 8 QALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMS 87 (525)
Q Consensus 8 ~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 87 (525)
+.+.+.++|+...|+.+++ +|||||||+++|++++.+|++++|||||+++|+.++..+.+.+.+..+ ++++|++
T Consensus 86 ~~~~~~~~l~~~~~~~~~~-----lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~v 159 (213)
T PRK15177 86 HFCYQLTQLEQCYTDRVSE-----YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVL 159 (213)
T ss_pred HHHHHHhChhHHhhchHhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEE
Confidence 3444667888777877765 999999999999999999999999999999999999999998866443 4689999
Q ss_pred eCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHh
Q 037973 88 IHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDE 125 (525)
Q Consensus 88 ~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~ 125 (525)
+|++. .+..+||++++|++|++++.|+.++..++++.
T Consensus 160 sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 160 THNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred ECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99987 58889999999999999999998887666543
No 265
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.9e-19 Score=188.92 Aligned_cols=112 Identities=32% Similarity=0.541 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCcccc------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
++.+.++++..||.+.. |+.+|+ ..++|||||+|||++||||+++++++++||||++||.++...|++.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 56788899998887643 556664 56789999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+++ +|+|+++|++. ...-+|+|++|++|++++.|.++++
T Consensus 503 ~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L 541 (559)
T COG4988 503 AKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEEL 541 (559)
T ss_pred HhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHH
Confidence 875 99999999985 4667999999999999999998776
No 266
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3e-19 Score=174.51 Aligned_cols=112 Identities=25% Similarity=0.402 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCcccccccc------cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAAKTVI------GDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA 78 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~v------g~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 78 (525)
.++++.++.+++.+..+... -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (229)
T cd03254 107 EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186 (229)
T ss_pred HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 34556666666654433321 012346799999999999999999999999999999999999999999999996
Q ss_pred HcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 79 QSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 79 ~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|+|||+++|++. ++. .+|++++|++|++++.|+.++.
T Consensus 187 -~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 187 -KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred -CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 5899999999986 454 5999999999999998875443
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=3.7e-19 Score=197.08 Aligned_cols=112 Identities=25% Similarity=0.406 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..|+.+ -.||.+|+. .+.||||||||++|||+|+++|++|+||||||+||+.+...+.+.|++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 467888888887654 247888864 356999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ ..+.||+|++|++|+++..|+.+++
T Consensus 526 ~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 526 LQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHH
Confidence 74 4799999999985 5678999999999999999997665
No 268
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2.8e-19 Score=175.50 Aligned_cols=88 Identities=34% Similarity=0.552 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+. .+|++++|++|
T Consensus 135 ~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g 211 (236)
T cd03253 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDG 211 (236)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECC
Confidence 457999999999999999999999999999999999999999999999987 999999999987 454 49999999999
Q ss_pred cEEEecCCCCh
Q 037973 109 QTVYSGSPMNL 119 (525)
Q Consensus 109 ~~v~~G~~~~~ 119 (525)
+++..|++++.
T Consensus 212 ~i~~~~~~~~~ 222 (236)
T cd03253 212 RIVERGTHEEL 222 (236)
T ss_pred EEEeeCCHHHH
Confidence 99988876543
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.79 E-value=4.3e-19 Score=164.45 Aligned_cols=80 Identities=33% Similarity=0.504 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v 111 (525)
||||||||+++|++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|+++
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVV 161 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999976 588899999999999987
Q ss_pred E
Q 037973 112 Y 112 (525)
Q Consensus 112 ~ 112 (525)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 5
No 270
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.79 E-value=4.8e-19 Score=175.80 Aligned_cols=104 Identities=29% Similarity=0.432 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++++|
T Consensus 117 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~t 191 (255)
T cd03236 117 RGKLDELVDQLELRHVLDRNIDQ-----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY 191 (255)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 45788999999998877776654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
||+++|++. .+.++||++++|+ |++++.|
T Consensus 192 IIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 192 VLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred EEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999986 5778999999995 5566544
No 271
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=3.7e-19 Score=200.63 Aligned_cols=110 Identities=29% Similarity=0.414 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..|+.+. .||.+|+. ...||||||||++|||||+++|++|+||||||+||+.+..++.+.|++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 4567888888888653 36777754 367999999999999999999999999999999999999999999988
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++
T Consensus 634 ~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 634 L---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred h---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHH
Confidence 6 589999999985 4567999999999999999997665
No 272
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=4.7e-19 Score=192.29 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.++|.+ ..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus 378 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~ 452 (490)
T PRK10938 378 QKLAQQWLDILGIDKRTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE 452 (490)
T ss_pred HHHHHHHHHHcCCchhhccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 357889999999987 77887765 999999999999999999999999999999999999999999999988765
Q ss_pred -EEEEEeCCCchHHHh-hcCeEEEeeCCcEEEecC
Q 037973 83 -IVIMSIHQPSYRILG-LLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 83 -tvi~~~H~~~~~v~~-~~d~v~~l~~G~~v~~G~ 115 (525)
|||+++|++. ++.+ ++|++++|++|++++.-.
T Consensus 453 ~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 453 TQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred cEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence 6999999986 5666 589999999999887643
No 273
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.8e-19 Score=168.86 Aligned_cols=87 Identities=36% Similarity=0.598 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 28 GHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++||..+++.+++|++++|+
T Consensus 115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE
Confidence 34569999999999999999999999999999999999999999999999876 67878877776557889999999999
Q ss_pred CCcEEEec
Q 037973 107 RGQTVYSG 114 (525)
Q Consensus 107 ~G~~v~~G 114 (525)
+|++++.|
T Consensus 195 ~G~i~~~g 202 (202)
T cd03233 195 EGRQIYYG 202 (202)
T ss_pred CCEEEecC
Confidence 99998765
No 274
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=5.2e-19 Score=196.30 Aligned_cols=112 Identities=22% Similarity=0.387 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..|+.+. .|+.+|+ ....||||||||++|||+|+.+|+|++||||||+||+.+..++.+.|++
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4678888999887653 3677766 3356999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++
T Consensus 522 ~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 522 VRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHH
Confidence 864 699999999985 5667999999999999999998765
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=7e-19 Score=169.00 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..|+.+++ ||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 107 ~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 107 DEALWEALAQVGLAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM 181 (204)
T ss_pred HHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 46788999999998877877654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEe
Q 037973 84 VIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l 105 (525)
||+++|++. .+.+.-+|++++
T Consensus 182 iii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 182 VILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred EEEEecChh-hhccCCceEEec
Confidence 999999987 566666777766
No 276
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=9e-19 Score=170.17 Aligned_cols=109 Identities=22% Similarity=0.429 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCccccccc------ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAAKTV------IGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA 78 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~------vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 78 (525)
+++.+.++.+++.+..++. .-+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 107 EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4567778888886654321 0012456799999999999999999999999999999999999999999999986
Q ss_pred HcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCC
Q 037973 79 QSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSP 116 (525)
Q Consensus 79 ~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~ 116 (525)
+ +.|||+++|++. ++. .+|++++|++|++++.|++
T Consensus 187 ~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 187 K-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred C-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCCC
Confidence 4 689999999986 455 4999999999999988763
No 277
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=5.9e-19 Score=167.17 Aligned_cols=108 Identities=24% Similarity=0.462 Sum_probs=98.8
Q ss_pred HHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEE
Q 037973 7 VQALIDQL-GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIV 84 (525)
Q Consensus 7 v~~~l~~l-~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tv 84 (525)
++++.+.+ .|.+.++++-|+ |||||||.++|||||+++|++|+|||||.||-|.-..+|.+.|++++++ |.||
T Consensus 116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 77888887 588889999887 9999999999999999999999999999999999999999999999976 6688
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+++.++.. ...+++||..+|.+|+++++|+.+++.
T Consensus 191 lLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 191 LLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 88887765 689999999999999999999987763
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=7.6e-19 Score=194.08 Aligned_cols=113 Identities=31% Similarity=0.560 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHcCCccc------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNA------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.+++++++++..++.+. .||.+|+. .+.||||||||++|||+++++|++|+|||||++||+.+...+.+.|++
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 35678889999999764 36777653 456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++
T Consensus 521 ~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 521 HA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred Hc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHHH
Confidence 85 5899999999986 34 56999999999999999987665
No 279
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.78 E-value=9.7e-19 Score=167.65 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 177 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 (201)
T ss_pred HHHHHHHHHHcCChhhhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788999999998877777654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEe
Q 037973 84 VIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l 105 (525)
+|+++|++. +....+|+++++
T Consensus 178 iii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 178 VVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EEEEecCch-hhhhccceeEec
Confidence 999999987 577799999887
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=6.6e-19 Score=194.46 Aligned_cols=112 Identities=27% Similarity=0.495 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGL-------RNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L-------~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+.+.++++..++ .+-.||.+|+ ....||||||||++|||+++.+|++|+||||||+||+.+...+.+.++++
T Consensus 433 eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 433 EEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred HHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 445555554433 3346899984 44569999999999999999999999999999999999999999999988
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
. +++|+|+++|+++ .+.+ +|+|++|++|++++.|+.+++.
T Consensus 512 ~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 512 L-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred h-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHHHH
Confidence 7 6789999999996 4555 9999999999999999987764
No 281
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.78 E-value=5.2e-19 Score=196.47 Aligned_cols=98 Identities=34% Similarity=0.569 Sum_probs=88.7
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhh
Q 037973 19 AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 19 ~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~ 98 (525)
-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++ ..+.
T Consensus 598 gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~ 673 (709)
T COG2274 598 GYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRS 673 (709)
T ss_pred cccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--Hhhh
Confidence 45677765 456799999999999999999999999999999999999999999999976 4799999999986 6788
Q ss_pred cCeEEEeeCCcEEEecCCCChh
Q 037973 99 LDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 99 ~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
||+|++|++|+++..|+.+++.
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred ccEEEEccCCceeccCCHHHHH
Confidence 9999999999999999987764
No 282
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.78 E-value=1e-18 Score=170.43 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
+++++++++.++|. ...++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKNIAE-----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35678899999995 456666654 9999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEee-CCcEEEecC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLS-RGQTVYSGS 115 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~-~G~~v~~G~ 115 (525)
.|||+++|++. ++ +.+|++++|+ ++..+.+|+
T Consensus 189 ~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 189 IAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 99999999986 45 4699999995 455555554
No 283
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.78 E-value=7.5e-19 Score=198.96 Aligned_cols=111 Identities=26% Similarity=0.439 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++.+. .||.+|+. ...||||||||++|||+|+++|++|+||||||+||+.+..++.+.|++
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 4567778888777652 46777754 467999999999999999999999999999999999999999999986
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 661 ---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 661 ---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred ---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 5899999999986 45669999999999999999987763
No 284
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=1.2e-18 Score=168.74 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.++|.+..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 190 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQ-----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAA 190 (214)
T ss_pred HHHHHHHHHcCChhhccCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4677899999998877877765 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeC
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
|+++|++. ++.+++|++++++.
T Consensus 191 ii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 191 LVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred EEEecChh-hhhhhcceEEEEee
Confidence 99999987 68999999999864
No 285
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.78 E-value=8.1e-19 Score=171.16 Aligned_cols=96 Identities=29% Similarity=0.459 Sum_probs=84.0
Q ss_pred HHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 7 VQALIDQL--GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 7 v~~~l~~l--~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
+++.++.+ |+++..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+
T Consensus 129 ~~~~l~~l~~gl~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 202 (226)
T cd03248 129 AHSFISELASGYDTEVGEKG-----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202 (226)
T ss_pred cHHHHHhccccccchhhcCC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 45677777 7776666655 45999999999999999999999999999999999999999999999875 6899
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|+++|++. ++. .+|++++|++|++
T Consensus 203 i~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 203 LVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred EEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999987 465 5999999999874
No 286
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=8.3e-19 Score=165.46 Aligned_cols=78 Identities=29% Similarity=0.600 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+++|++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999999999877999999999986 68899999999999974
No 287
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1e-18 Score=163.56 Aligned_cols=78 Identities=36% Similarity=0.625 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999888999999999986 68889999999999974
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=1.1e-18 Score=197.20 Aligned_cols=113 Identities=29% Similarity=0.529 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++.+ -.||.+|+. ...||||||||++|||+|+.+|++++||||||+||+.+..++.+.|++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 456777777777654 347777764 456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.
T Consensus 647 ~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 647 WL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred Hh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 86 4799999999986 45789999999999999999977664
No 289
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.1e-18 Score=191.82 Aligned_cols=112 Identities=29% Similarity=0.539 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++.+.++..++.+ -.|+.+|+ ..+.||||||||++|||+++++|++++|||||+|||+.++.++.+.|+++
T Consensus 422 ~~~~~~~~~~~~~~~i~~l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 422 EKIIEAAKLAGVHELILRLPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred HHHHHHHHHhChHHHHHhCccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 44555555555433 23566654 34679999999999999999999999999999999999999999999998
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
..+|+|+|+++|+++ ..+.+|+|++|++|++++.|+.+++
T Consensus 501 ~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 501 KARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred hhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHH
Confidence 767899999999985 4568999999999999999987654
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=1.3e-18 Score=173.25 Aligned_cols=111 Identities=28% Similarity=0.428 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 6 RVQALIDQLGLRNAAKTVIG------DEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg------~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
++++.++..++.+..+.... +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++.
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~- 203 (257)
T cd03288 125 RLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF- 203 (257)
T ss_pred HHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-
Confidence 44555555566543333210 12346799999999999999999999999999999999999999999999975
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++.|||+++|++. .+.. +|++++|++|+++..|+++++
T Consensus 204 ~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 204 ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHHH
Confidence 5899999999987 4554 999999999999999987654
No 291
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=1.2e-18 Score=192.53 Aligned_cols=112 Identities=28% Similarity=0.458 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++.+|+.+. .|+.+|+. .+.||||||||++|||+++++|++++||||||+||+.+...+++.|++
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 4678888888887642 46777764 456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++ +++|+|++||+++ ..+.||+|++|++|+++..|+.++.
T Consensus 515 ~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 515 LM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred Hh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 74 5799999999985 5788999999999999999987665
No 292
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.77 E-value=1.7e-18 Score=168.71 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++++.++++.+||.+ ..+..++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 126 ~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 200 (224)
T TIGR02324 126 RARARELLARLNIPERLWHLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGA 200 (224)
T ss_pred HHHHHHHHHHcCCchhhhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 357788999999976 3455554 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEee
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
|||+++|++. .+.+++|+++.+.
T Consensus 201 tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 201 ALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999965 5778999998763
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.3e-18 Score=162.76 Aligned_cols=77 Identities=29% Similarity=0.567 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.+|++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999888999999999986 45 57999999999974
No 294
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.77 E-value=1.4e-18 Score=196.66 Aligned_cols=111 Identities=24% Similarity=0.429 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++.+ -.||.+|+ ....||||||||++||||++++|++|+||||||+||+.+...+.+.|++
T Consensus 578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 578 QDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred HHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 456777788777754 34777876 3467999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ +|+|+|+++|+++ ..+.+|+|++|++|+++..|+.+++
T Consensus 657 ~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 657 L--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred h--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHH
Confidence 5 5799999999986 4578999999999999999997665
No 295
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=2.1e-18 Score=190.03 Aligned_cols=106 Identities=27% Similarity=0.373 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
..++++++.++|.+..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~-----LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 506 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREAT 506 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 3568899999999888888776 9999999999999999999999999999999999999999999999875 899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
||+++||+. .+..++|++++|++ ++...|...
T Consensus 507 viivsHD~~-~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 507 ALVVDHDIY-MIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEcC-cceeeeecC
Confidence 999999986 68889999999965 777777643
No 296
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=1.9e-18 Score=195.10 Aligned_cols=112 Identities=30% Similarity=0.479 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++.+. .|+.+|+. .+.||||||||++|||+|+++|++|+|||||++||+.+...+.+.|++
T Consensus 560 ~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 560 FEHVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 4566677777776542 46777754 467999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++
T Consensus 639 ~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 639 IC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred Hh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 84 6899999999986 3456999999999999999987665
No 297
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=2.3e-18 Score=190.99 Aligned_cols=112 Identities=31% Similarity=0.486 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++.+ -.|+.+|+. .+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGER-GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 456777788777654 246777653 456999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ ..+.+|+|++|++|+++..|+.++.
T Consensus 517 ~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 517 LM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred Hh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHH
Confidence 75 4799999999985 5678999999999999999986554
No 298
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=3.9e-18 Score=164.14 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. +|.|+|+++|++. .+.. +|++++|++|
T Consensus 123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g 199 (207)
T cd03369 123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAG 199 (207)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECC
Confidence 45699999999999999999999999999999999999999999999985 5899999999987 4554 9999999999
Q ss_pred cEEEecCC
Q 037973 109 QTVYSGSP 116 (525)
Q Consensus 109 ~~v~~G~~ 116 (525)
+++..|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988864
No 299
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.2e-18 Score=163.65 Aligned_cols=84 Identities=31% Similarity=0.525 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 105 ERRVREALTAVGASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred HHHHHHHHHHcCchhhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 35688999999998877877654 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCc
Q 037973 84 VIMSIHQPS 92 (525)
Q Consensus 84 vi~~~H~~~ 92 (525)
||+++|++.
T Consensus 180 ili~sH~~~ 188 (190)
T TIGR01166 180 VVISTHDVD 188 (190)
T ss_pred EEEEeeccc
Confidence 999999975
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=2.5e-18 Score=161.59 Aligned_cols=83 Identities=29% Similarity=0.580 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++++.+|++++|||||+|||+.++..+++.|++++ ++.|||+++|++. ++ +.+|++++|++|
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g 172 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENG 172 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence 46799999999999999999999999999999999999999999999985 5899999999987 45 469999999999
Q ss_pred cEEEec
Q 037973 109 QTVYSG 114 (525)
Q Consensus 109 ~~v~~G 114 (525)
++++.|
T Consensus 173 ~i~~~~ 178 (178)
T cd03247 173 KIIMQG 178 (178)
T ss_pred EEEecC
Confidence 998764
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.1e-18 Score=188.96 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRNAA-KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||.+.. +..+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~ 203 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGLMSE-----VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS 203 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence 45788999999997643 445554 999999999999999999999999999999999999999999864 588
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcE-EEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQT-VYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~-v~~G~~~~~ 119 (525)
|||+++|++. .+.++||+|++|++|++ ++.|++++.
T Consensus 204 tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 204 TMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred eEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 9999999987 68899999999999999 588887654
No 302
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=2.7e-18 Score=190.11 Aligned_cols=111 Identities=26% Similarity=0.405 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+.+.+.++..++.+ -.|+.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 34555566555543 23556665 35679999999999999999999999999999999999999999999987
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
. +++|+|+++|+++ .+ +.+|+|++|++|+++..|+.++.
T Consensus 518 ~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 518 R-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred h-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHHH
Confidence 4 5899999999985 34 66999999999999999986554
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.9e-18 Score=189.33 Aligned_cols=107 Identities=24% Similarity=0.381 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+|+. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.
T Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 486 (530)
T PRK15064 415 EQAVRGTLGRLLFSQDDIKKSVKV-----LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG 486 (530)
T ss_pred HHHHHHHHHHcCCChhHhcCcccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence 45788999999994 667777765 9999999999999999999999999999999999999999999886 35
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~~ 119 (525)
|||++||++. .+.++||++++|++|+++ +.|++.+.
T Consensus 487 tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 487 TLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999986 688899999999999998 77876543
No 304
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.76 E-value=2.9e-18 Score=189.35 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++.+ -.|+.+|+. ...||||||||++|||+++++|++++|||||++||+.+...+.+.|++
T Consensus 418 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 418 QQEIEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 346677777776643 346777653 456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +|+|+|+++|+++ ..+.+|+|++|++|+++..|+.+++
T Consensus 497 ~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 497 WG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred Hh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHH
Confidence 75 6899999999985 4567999999999999999986554
No 305
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.6e-18 Score=161.51 Aligned_cols=77 Identities=34% Similarity=0.577 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999887 899999999986 6778999999999985
No 306
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=3.3e-18 Score=164.71 Aligned_cols=96 Identities=27% Similarity=0.484 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++++.+|++++|||||+|||+.+...+.+.|++++++|+|
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 179 (207)
T PRK13539 105 ELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179 (207)
T ss_pred HHHHHHHHHHcCCHHHHcCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 34688999999998877777655 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
||+++|++. ++.. |+++.+..
T Consensus 180 iii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 180 VIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred EEEEeCCch-hhcc--CcEEeecC
Confidence 999999986 4554 88877744
No 307
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.6e-18 Score=179.41 Aligned_cols=113 Identities=32% Similarity=0.507 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
++|-++.+..|+.+ -.+|.||+.+ +.|||||||||+++|+++.||+|+++|||||.||+.+..++++.+++
T Consensus 455 eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~- 532 (591)
T KOG0057|consen 455 EEVVEACKRAGLHDVISRLPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD- 532 (591)
T ss_pred HHHHHHHHHcCcHHHHHhccccchhhHhhcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-
Confidence 45556666666644 3456677644 34899999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPH 121 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~ 121 (525)
...|+|+|++.|+.+ ..+-||+|+++++|++...|+.+++..
T Consensus 533 ~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 533 VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 446899999999975 677899999999999999999877643
No 308
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=2.7e-18 Score=194.08 Aligned_cols=111 Identities=23% Similarity=0.416 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++.+. .||.+|+. ...||||||||++|||+++++|+|++||||||+||+.+...+.+ ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~- 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR- 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence 4677788888887653 46777753 45699999999999999999999999999999999999999888 22
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
..+++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 661 -~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 661 -SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred -ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 236899999999985 45679999999999999999987653
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=4.6e-18 Score=159.27 Aligned_cols=87 Identities=24% Similarity=0.449 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG-SIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|+|+++|++. .+.+++|++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999998775 89999999986 57889999999998866
Q ss_pred EEe--cCCCCh
Q 037973 111 VYS--GSPMNL 119 (525)
Q Consensus 111 v~~--G~~~~~ 119 (525)
++. |+|...
T Consensus 151 ~~~~~~~~~~~ 161 (177)
T cd03222 151 VYGIASQPKGT 161 (177)
T ss_pred cceeccCCcch
Confidence 655 666544
No 310
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.4e-18 Score=185.30 Aligned_cols=101 Identities=33% Similarity=0.626 Sum_probs=91.0
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH
Q 037973 15 GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR 94 (525)
Q Consensus 15 ~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 94 (525)
++.+-.||.||+.+. +||||||||++|||||++||+||||||.||.||+++...|-+.|.++.+ ++|||++.|..+
T Consensus 589 ~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS-- 664 (716)
T KOG0058|consen 589 NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS-- 664 (716)
T ss_pred hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--
Confidence 566778999997443 5999999999999999999999999999999999999999999999875 499999999986
Q ss_pred HHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 95 ILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 95 v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
..+.+|+|+++++|++++.|+-+++
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eL 689 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDEL 689 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHH
Confidence 5667999999999999999977665
No 311
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.74 E-value=6.5e-18 Score=161.47 Aligned_cols=92 Identities=23% Similarity=0.373 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.++|.+..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 106 RTIEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred HHHHHHHHHcCCHHHhcCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4688999999999888877765 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEE
Q 037973 85 IMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~ 104 (525)
|+++|++.. + .+++++.
T Consensus 181 i~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 181 LLTTHQDLG-L--VEARELR 197 (198)
T ss_pred EEEEccccc-c--cceEEee
Confidence 999999853 2 4577654
No 312
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.74 E-value=5.9e-18 Score=187.30 Aligned_cols=112 Identities=28% Similarity=0.450 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++.+. .|+.+|+. .+.||||||||+++||+++++|++++||||||+||+.+...+.+.|++
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 4677888888887543 35666653 456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++ ..+.+|+|+.|++|+++..|+.++.
T Consensus 522 ~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 522 LM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHH
Confidence 85 5899999999985 4677999999999999999986654
No 313
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=153.71 Aligned_cols=115 Identities=28% Similarity=0.403 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~ 80 (525)
++++++.+.+..+||++..++.|-. ||||||||+.||+||+.+|++|+||||.+.||.-+++++-++|-++++ .
T Consensus 108 ~R~~~a~q~l~~VgL~~~~~~~i~q-----LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t 182 (259)
T COG4525 108 QRREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182 (259)
T ss_pred HHHHHHHHHHHHhCcccccccceEe-----ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999988887764 999999999999999999999999999999999999999999999986 5
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeC--CcEEEecCCCChhhH
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSR--GQTVYSGSPMNLPHF 122 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~--G~~v~~G~~~~~~~~ 122 (525)
|+.++++||+.. |..-+++++++|+. ||++..=+++-...|
T Consensus 183 gk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 183 GKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred CCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999987 45568999999986 799987777643333
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=5.7e-18 Score=186.37 Aligned_cols=105 Identities=26% Similarity=0.409 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.. .++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCchhh-----cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 357888999999964 6777765 99999999999999999999999999999999999999999999873 59
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~ 118 (525)
||+++|++. .+.+++|+|++|++|+++ +.|+.++
T Consensus 213 viiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 213 VVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred EEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 999999986 688899999999999986 7787654
No 315
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=3.9e-18 Score=156.83 Aligned_cols=111 Identities=23% Similarity=0.446 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+++++++|+..||.+.+|...+. ||.||||++.||+.++++|++|++|||++|+-.+.....-++|+.++. .
T Consensus 123 ~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~ 196 (249)
T COG4674 123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-K 196 (249)
T ss_pred hHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-C
Confidence 3457999999999999999999887 999999999999999999999999999999999999999999999985 5
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++|+++.||+. .+.+++|+|.+|++|++.++|+.+++
T Consensus 197 hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 197 HSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred ceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHh
Confidence 78999999997 59999999999999999999998776
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=6.2e-18 Score=188.55 Aligned_cols=107 Identities=21% Similarity=0.410 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++++.++|+.+++. +..++.++. |||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ .|
T Consensus 407 ~~~~~~~L~~~~l~~~~~~~~~~~-----LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g- 478 (638)
T PRK10636 407 EQKLRDYLGGFGFQGDKVTEETRR-----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG- 478 (638)
T ss_pred HHHHHHHHHHcCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence 45688999999996 467788776 9999999999999999999999999999999999999999999987 34
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~~ 119 (525)
|||+++||+. .+..+||++++|++|+++ +.|+.++.
T Consensus 479 tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 479 ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999976 688899999999999997 88877654
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.73 E-value=1.5e-17 Score=167.32 Aligned_cols=109 Identities=22% Similarity=0.380 Sum_probs=87.2
Q ss_pred HHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHH
Q 037973 7 VQALIDQLGLRNAAKT-------VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVL-QRIA 78 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~-------~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l-~~l~ 78 (525)
+.+.++.+++.+..+. .++ ...+.||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.+ ++++
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~ 207 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh
Confidence 3455566666543322 222 134579999999999999999999999999999999999999999865 5554
Q ss_pred HcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 79 QSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 79 ~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++.|||+++|++.. + +.+|++++|++|++++.|+++++
T Consensus 208 -~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 208 -ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred -CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence 57899999999874 4 57999999999999999987654
No 318
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=1.1e-17 Score=184.46 Aligned_cols=98 Identities=29% Similarity=0.468 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.++|.+..|+.+++ ||||||||++||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|
T Consensus 190 ~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t 263 (590)
T PRK13409 190 RGKLDEVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY 263 (590)
T ss_pred HHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence 45789999999999888988876 999999999999999999999999999999999999999999999988 999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
||+++|++. .+..++|++++|.+|
T Consensus 264 vIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999987 688999999999864
No 319
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=1.5e-17 Score=159.75 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 28 GHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++. .+.. +|++++|+
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~ 201 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLD 201 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEe
Confidence 356799999999999999999999999999999999999999998 56777677899999999986 4665 99999999
Q ss_pred CCc
Q 037973 107 RGQ 109 (525)
Q Consensus 107 ~G~ 109 (525)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 985
No 320
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=4.6e-18 Score=192.79 Aligned_cols=102 Identities=33% Similarity=0.514 Sum_probs=92.4
Q ss_pred CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH
Q 037973 15 GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR 94 (525)
Q Consensus 15 ~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 94 (525)
+|.+-.||.||+.+ .+||||||||++||||+++||+||+|||.||.||+++.+.|-+.|.+. .+|+|.|++.|.++
T Consensus 1111 sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS-- 1186 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS-- 1186 (1228)
T ss_pred cCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh--
Confidence 56677899999744 469999999999999999999999999999999999999999999985 56899999999987
Q ss_pred HHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 95 ILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 95 v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
..+.+|.|.++++|++++.|+-+++.
T Consensus 1187 TIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1187 TIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred hhhcCCEEEEEECCEEEecccHHHHH
Confidence 46679999999999999999987764
No 321
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.1e-17 Score=149.27 Aligned_cols=112 Identities=28% Similarity=0.483 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.++...++|++++++.. + + ++.|+..|||++||+.||+-|++.|++.|+||||.|||..-+.+++++++.+.++ |
T Consensus 127 iR~~a~~WL~~VEI~~~--R-i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~ 202 (258)
T COG4107 127 IRAEAQDWLEEVEIDLD--R-I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHHHHHHHhcccCcc--c-c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC
Confidence 34566788999888642 2 2 3567889999999999999999999999999999999999999999999999865 8
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
-++++++|+.. .+.-++||.++|.+|++++.|-++++
T Consensus 203 la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 203 LAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred ceEEEEechhH-HHHHhhhcceeecCCCEecccccccc
Confidence 89999999986 56668999999999999999988776
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=9.3e-18 Score=200.99 Aligned_cols=113 Identities=25% Similarity=0.428 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.++++++..++.+ -.||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 355777777666543 45888985 3456999999999999999999999999999999999999999999999
Q ss_pred HH-HcCCEEEEEeCCCchHHHhhcCeEEEeeC----CcEE-EecCCCCh
Q 037973 77 IA-QSGSIVIMSIHQPSYRILGLLDRMIFLSR----GQTV-YSGSPMNL 119 (525)
Q Consensus 77 l~-~~g~tvi~~~H~~~~~v~~~~d~v~~l~~----G~~v-~~G~~~~~ 119 (525)
+. .+++|+|+++|+++ ..+.+|+|++|++ |+++ +.|+.+++
T Consensus 1404 ~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 86 46899999999985 4567999999999 9955 89987665
No 323
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-17 Score=156.10 Aligned_cols=120 Identities=30% Similarity=0.474 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
.+++++.++.+++++ ..++.+. .|+|||||||..|...++.+|++.+||||-||||..+-..|-+-++++..+|.
T Consensus 120 ~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~ 195 (251)
T COG0396 120 IKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195 (251)
T ss_pred HHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCC
Confidence 567888999999987 6777775 48999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhc--CeEEEeeCCcEEEecCCCChhhHHHhcCCCC
Q 037973 83 IVIMSIHQPSYRILGLL--DRMIFLSRGQTVYSGSPMNLPHFFDEFGHPI 130 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~--d~v~~l~~G~~v~~G~~~~~~~~~~~~g~~~ 130 (525)
+++++||.. ++.+.- |+|.+|.+|+|+..|.+ ++.+.++.-|+.+
T Consensus 196 ~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 196 GVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred eEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999996 477766 99999999999999999 8877888777653
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.73 E-value=2.7e-17 Score=180.83 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
++.+++.++.+++.+..+..-|......||||||||++|||+++++|++|+|||||++||+.+...+.+.+.+..+ +++
T Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 501 (547)
T PRK10522 422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK 501 (547)
T ss_pred HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4567889999998764432111011247999999999999999999999999999999999999999999987654 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEe
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~ 113 (525)
|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 502 tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 502 TIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 9999999984 5678999999999999866
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=185.61 Aligned_cols=105 Identities=27% Similarity=0.437 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+.+++++++.+|+. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~~-----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~ 197 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVSD-----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QG 197 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchhh-----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CC
Confidence 35788999999997 567888876 9999999999999999999999999999999999999999998875 46
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~ 117 (525)
|||+++|++. .+.++||++++|++|+++ |.|+..
T Consensus 198 tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~ 232 (638)
T PRK10636 198 TLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYS 232 (638)
T ss_pred eEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHH
Confidence 9999999976 688899999999999986 566554
No 326
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1.9e-17 Score=160.60 Aligned_cols=101 Identities=24% Similarity=0.426 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHH
Q 037973 6 RVQALIDQLGLRNAAKT-------VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVK--VLQR 76 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~-------~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~--~l~~ 76 (525)
+.+++++.++|.+..+. ..+ ..+..||||||||++||++++.+|++++|||||+|||+.++..+++ +++.
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~ 187 (218)
T cd03290 109 RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187 (218)
T ss_pred HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 44567777777553321 111 2346799999999999999999999999999999999999999998 6777
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+.++|.|+|+++|++. .+ ..+|++++|++|.
T Consensus 188 ~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 188 LQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 7667899999999987 45 4699999999884
No 327
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.73 E-value=2.6e-17 Score=181.23 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=90.1
Q ss_pred HHHHHHHHHHcCCcccccccc-cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcC
Q 037973 4 KIRVQALIDQLGLRNAAKTVI-GDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQ-RIAQSG 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~v-g~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~-~l~~~g 81 (525)
+++++++++.+++.+..+... |.+....||||||||++|||+++.+|++++|||||++||+.+..++.+.+. .+..+|
T Consensus 442 ~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 521 (555)
T TIGR01194 442 LDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQG 521 (555)
T ss_pred HHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 457888999999976544322 222235699999999999999999999999999999999999999998664 565679
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEe
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~ 113 (525)
+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 522 ~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 522 KTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999985 4678999999999999754
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1.2e-17 Score=183.71 Aligned_cols=105 Identities=27% Similarity=0.396 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
.+++++++.+|+.. .++.+++ ||||||||++||++|+.+|++|+|||||++||+.++..+.+.|+++ +.||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~~~-----LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADVTK-----LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence 45677888888854 5666654 9999999999999999999999999999999999999999999876 3599
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCCh
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMNL 119 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~~ 119 (525)
|+++|++. .+..+||++++|++|+++ +.|+.++.
T Consensus 212 IiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 212 VAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred EEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 99999986 688899999999999975 77876654
No 329
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.4e-17 Score=155.40 Aligned_cols=75 Identities=39% Similarity=0.689 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999864 799999999987 4666 99999999985
No 330
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.72 E-value=3.3e-17 Score=172.88 Aligned_cols=109 Identities=27% Similarity=0.460 Sum_probs=101.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++..++|+.+|+....++++++ ||+||||-|.||+||..+++|++|||||+.|+...+..+.+.++++.++|.+
T Consensus 123 ~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ 197 (500)
T COG1129 123 RRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVA 197 (500)
T ss_pred HHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 46788999999996558888887 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCC-CC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSP-MN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~-~~ 118 (525)
||.++|.+. |++++||||.+|.+|+.+..++. .+
T Consensus 198 ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 198 IIYISHRLD-EVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred EEEEcCcHH-HHHHhcCEEEEEeCCEEeeecccccC
Confidence 999999987 79999999999999999999883 44
No 331
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=2.1e-17 Score=185.48 Aligned_cols=107 Identities=24% Similarity=0.411 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+|+.+ ..++.++. ||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++. + .
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~~~-----LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-g 675 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-G 675 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C
Confidence 456888999999974 56666654 9999999999999999999999999999999999999998888765 3 4
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~~ 119 (525)
|||+++|++. .+..+||++++|++|+++ +.|+.++.
T Consensus 676 tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 676 GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999986 688899999999999998 77765543
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=1.8e-17 Score=185.03 Aligned_cols=104 Identities=30% Similarity=0.502 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+.+++++++.+|+.. ++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 136 ~~~~~~~l~~lgl~~--~~~~~~-----LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~t 205 (635)
T PRK11147 136 ENRINEVLAQLGLDP--DAALSS-----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GS 205 (635)
T ss_pred HHHHHHHHHhCCCCC--CCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CE
Confidence 457889999999963 666655 99999999999999999999999999999999999999999999873 59
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~ 118 (525)
||+++|++. .+.++||+|+.|++|+++ +.|+.++
T Consensus 206 vlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 206 IIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred EEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 999999976 688899999999999997 5576544
No 333
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=192.32 Aligned_cols=117 Identities=28% Similarity=0.498 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.++.++++++.++|.+.+|+.++. +|||+|||+++|.+++.+|++++|||||+|+||.+++.+.++++++.++|
T Consensus 674 di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 674 DIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred HHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999999999887 99999999999999999999999999999999999999999999999988
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHH
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFD 124 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~ 124 (525)
+.||+|+|.++ |...+|||+.+|.+|+..+-|++++++..|.
T Consensus 749 ~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 749 KAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred CEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 89999999987 7999999999999999999999999886654
No 334
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=1.7e-17 Score=189.11 Aligned_cols=108 Identities=26% Similarity=0.470 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++++ .|+.+||.+. .|+.+++ ||||||||+.||++|..+| ++++|||||+|||+..+.++.+.|++++++
T Consensus 467 ~~rl~-~L~~vGL~~l~l~r~~~~-----LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~ 540 (943)
T PRK00349 467 RERLK-FLVDVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL 540 (943)
T ss_pred HHHHH-HhhccccCCCCCCCchhh-----CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC
Confidence 34554 6888999876 6888766 9999999999999999997 999999999999999999999999999888
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. ++. .+|+|++| ++|++++.|+++++
T Consensus 541 G~TVIvVeH~~~-~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 541 GNTLIVVEHDED-TIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCEEEEEeCCHH-HHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 999999999986 454 69999999 89999999998765
No 335
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=2.7e-17 Score=157.52 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
.+++++++.+++.+..++.++. ||||||||++||++++++|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhh-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 4688999999998777777655 99999999999999999999999999999999999999999999998789999
Q ss_pred EEEeCCCchHHHhhcCeEE
Q 037973 85 IMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~ 103 (525)
|+++|++. ..+.+|...
T Consensus 181 ii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 181 LLTSHQDL--PLNKADYEE 197 (200)
T ss_pred EEEeCCch--hccccchhh
Confidence 99999976 345577543
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.71 E-value=2.4e-17 Score=170.67 Aligned_cols=112 Identities=31% Similarity=0.520 Sum_probs=100.3
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM 86 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 86 (525)
|.|++ +.|..-.||.||+ ....||||||||+++||||-.||.+++||||-|+||......+.+.|.++.++|.|+|+
T Consensus 451 vHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvv 527 (580)
T COG4618 451 VHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527 (580)
T ss_pred hHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEE
Confidence 44444 4566778999996 44679999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHH
Q 037973 87 SIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFF 123 (525)
Q Consensus 87 ~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~ 123 (525)
++|.|+ +...+|+|++|++|++-.+|+.+++....
T Consensus 528 iaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 528 IAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999996 78899999999999999999999886543
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=3.4e-17 Score=196.16 Aligned_cols=102 Identities=30% Similarity=0.507 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++.++++.+++.+. .||.+|.. ...||||||||++|||||+++|+||+|||||++||+.+...+.+.|+++
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~ 625 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 567788888877654 36667653 5679999999999999999999999999999999999999999999999
Q ss_pred HH-cCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 78 AQ-SGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 78 ~~-~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
.+ +|+|+|+++|+++ .+ +.||+|++|++|+
T Consensus 626 ~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 626 KGNENRITIIIAHRLS-TI-RYANTIFVLSNRE 656 (1466)
T ss_pred hhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCCc
Confidence 76 5899999999986 34 6899999999874
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=3.9e-17 Score=183.24 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+|+. +..++.+++ ||||||||++||++|+.+|++|+|||||++||+.+...+.+.|+++ +.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~-----LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKT-----FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 45677788888885 456777765 9999999999999999999999999999999999999999999886 67
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~ 118 (525)
|+|+++|+.. .+.++||++++|++|+++ |.|+.++
T Consensus 393 tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 393 TFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999975 688899999999999996 6666543
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=4.4e-17 Score=196.63 Aligned_cols=113 Identities=19% Similarity=0.341 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++++..++.+ -.|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 456778888887754 24677765 3346999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.. +++|+|+++|+++ .+ ..||+|++|++|++++.|+++++.
T Consensus 1417 ~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1417 EF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred Hc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 64 5899999999986 34 459999999999999999987763
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.70 E-value=5.1e-17 Score=147.45 Aligned_cols=75 Identities=31% Similarity=0.461 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+||+||+||++||++|+.+|+++++||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+++|++++|++|+
T Consensus 70 ~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 49999999999999999999999999999999999999999999987 469999999986 6888999999999985
No 341
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=4.5e-17 Score=185.44 Aligned_cols=103 Identities=29% Similarity=0.488 Sum_probs=91.7
Q ss_pred HHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 037973 10 LIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM 86 (525)
Q Consensus 10 ~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 86 (525)
.++.+||... .++.+.+ |||||+||+.||++|+++| ++++|||||+|||+..+..+++.|+++.++|.|||+
T Consensus 470 ~L~~vgL~~l~l~r~~~t-----LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGT-----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCCCcCc-----CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3677788754 5666655 9999999999999999986 899999999999999999999999999988999999
Q ss_pred EeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 87 SIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 87 ~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
++|++. .+ ..+|+|+.| ++|++++.|+++++
T Consensus 545 VeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 545 VEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 999976 45 589999999 89999999988665
No 342
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=5.5e-17 Score=154.74 Aligned_cols=93 Identities=24% Similarity=0.231 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+++.+..++.+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++..++|+|
T Consensus 101 ~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 175 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDEKCYS-----LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI 175 (195)
T ss_pred HHHHHHHHHHcCCHhhhccChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 34678889999998877777654 9999999999999999999999999999999999999999999887778999
Q ss_pred EEEEeCCCchHHHhhcCeEE
Q 037973 84 VIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~ 103 (525)
+|+++|++.. + +.+|-|.
T Consensus 176 iii~sh~~~~-i-~~~~~~~ 193 (195)
T PRK13541 176 VLLSSHLESS-I-KSAQILQ 193 (195)
T ss_pred EEEEeCCccc-c-chhheec
Confidence 9999999862 3 3466553
No 343
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.70 E-value=6.5e-17 Score=150.31 Aligned_cols=75 Identities=35% Similarity=0.551 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|+++|++. ..+.+|++++|++|
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 4679999999999999999999999999999999999999999999986 589999999985 35699999999875
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=5.2e-17 Score=178.69 Aligned_cols=103 Identities=20% Similarity=0.377 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
.+++++++.+||.+ ..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|
T Consensus 421 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~ 492 (552)
T TIGR03719 421 VPSRAYVGRFNFKGSDQQKKVGQ-----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GC 492 (552)
T ss_pred HHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---Ce
Confidence 34667899999964 56777765 99999999999999999999999999999999999999999999973 38
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeC-CcEE-EecCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSR-GQTV-YSGSP 116 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~-G~~v-~~G~~ 116 (525)
||+++|++. .+.++||++++|++ |+++ +.|+.
T Consensus 493 viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 493 AVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999986 68889999999987 5766 44543
No 345
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=7.4e-17 Score=195.02 Aligned_cols=113 Identities=19% Similarity=0.329 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++++..++.+ -.|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 456777788777643 35677765 3346999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.. +++|+|+++|+++ .+ ..||+|++|++|++++.|+++++.
T Consensus 1420 ~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1420 EF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred HC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 74 5899999999986 34 459999999999999999998764
No 346
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=7.8e-17 Score=177.42 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
.+++++++.+++.+ ..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |
T Consensus 423 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-t 494 (556)
T PRK11819 423 IPSRAYVGRFNFKGGDQQKKVGV-----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-C 494 (556)
T ss_pred HHHHHHHHhCCCChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-e
Confidence 34567899999964 56777765 99999999999999999999999999999999999999999999873 4 8
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeC-CcEE-EecCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSR-GQTV-YSGSP 116 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~-G~~v-~~G~~ 116 (525)
||+++|++. .+.++||++++|++ |++. +.|+.
T Consensus 495 vi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 495 AVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 999999986 68889999999986 7776 45543
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=7.1e-17 Score=194.79 Aligned_cols=113 Identities=28% Similarity=0.434 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKV-LQ 75 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~-l~ 75 (525)
+++.+++++..+|.+. -+|.||+.+ ..||||||||++||||+.++|+|++||||||+||+.++.++.+. ++
T Consensus 707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 707 SERYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred HHHHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 4677888888777542 367888753 45999999999999999999999999999999999999999765 44
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.. .+++|+|++||+++ ..+.+|+|++|++|++++.|+.+++.
T Consensus 786 ~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 786 DE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 43 46899999999985 46779999999999999999977653
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.68 E-value=1.1e-16 Score=193.33 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++++..++.+ -.|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...+.+.|++
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 456778888887754 34777775 3346999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.. +++|+|+++|+++ ....+|+|++|++|++++.|+++++.
T Consensus 1467 ~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1467 QF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred Hc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 64 5799999999986 34569999999999999999987763
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.7e-16 Score=146.03 Aligned_cols=77 Identities=40% Similarity=0.673 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
|||||+||++||++++.+|++++|||||+|||..++..+.+.++++.++++|+++++|++. ++...+|+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999999999999877899999999986 5777899999999875
No 350
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.8e-17 Score=163.51 Aligned_cols=101 Identities=33% Similarity=0.552 Sum_probs=89.8
Q ss_pred CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHH
Q 037973 16 LRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRI 95 (525)
Q Consensus 16 L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v 95 (525)
+.+-.|+.||..+.+ |||||||||+|||+++.+|+||+|||.||.||+.+..++...|++++ .|+|.+++-|..+- +
T Consensus 385 lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i 461 (497)
T COG5265 385 LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I 461 (497)
T ss_pred Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c
Confidence 556678999985544 79999999999999999999999999999999999999999999987 68999999999873 4
Q ss_pred HhhcCeEEEeeCCcEEEecCCCChh
Q 037973 96 LGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 96 ~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
. -+|.|++|++|+|++.|+-+++.
T Consensus 462 ~-~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 462 I-DADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred c-CCceEEEeeCCEEEecCcHHHHH
Confidence 4 59999999999999999876653
No 351
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.2e-16 Score=166.60 Aligned_cols=109 Identities=26% Similarity=0.493 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++.+++..+.|++.. -.+..+++ ||||.+|||.||+.|.++|++|||||||.|.|.-+..+|.+++++++++|+
T Consensus 378 ~~~~~~~~~~l~Ik~~s~~~~v~~-----LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ 452 (500)
T COG1129 378 RALAERYIRRLRIKTPSPEQPIGT-----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK 452 (500)
T ss_pred HHHHHHHHHhcCcccCCccchhhc-----CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCC
Confidence 457888999999854 34566665 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
+||+++.+.. |+..+||||++|++|+++..=+.++
T Consensus 453 ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 453 AILMISSELP-ELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred EEEEEeCChH-HHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999976 7999999999999999987555443
No 352
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=1.8e-16 Score=191.30 Aligned_cols=113 Identities=21% Similarity=0.342 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHD-PILLFLDEPTSGLDSTSAYMVVKVLQ 75 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~-p~illlDEPtsgLD~~~~~~i~~~l~ 75 (525)
++.+.++++..+|.+. .|+.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...+.+.|+
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 4678888888888653 4777775 3356999999999999999996 89999999999999999999999999
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+.. +++|+|+++|+++ ....||+|++|++|++++.|+++++.
T Consensus 1491 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1491 SAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 853 5799999999985 45679999999999999999988763
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=1.8e-16 Score=191.65 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVK-VLQ 75 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~-~l~ 75 (525)
+++.+++++..+|.+. -+|.||+.+ ..||||||||++||||+.++|+|++||||||+||++++.++.+ .++
T Consensus 707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 707 PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 4678888888887653 367788743 4599999999999999999999999999999999999998875 455
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.+. +|+|+|++||+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 786 ~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 786 DEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 543 6899999999985 56789999999999999999987653
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.66 E-value=2.4e-16 Score=189.98 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQ 75 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~ 75 (525)
.++++.++++..+|.+ -.|+.+|+ ....||||||||++|||||+++|+||+|||||++||+.+...+.+.|+
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 3567888999988854 35777765 335699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+.. +++|||+++|+++ ....||+|++|++|+++..|+|.++.
T Consensus 1398 ~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1398 QSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 864 5799999999986 44569999999999999999987763
No 355
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.66 E-value=3.2e-16 Score=178.85 Aligned_cols=107 Identities=29% Similarity=0.449 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 6 RVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 6 ~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+..+.++.+||.+ ..+..+++ ||||||||+.||++|+.+| ++++|||||+|||+.++..+++.|+++.++|
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~t-----LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATT-----LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred HHHHHHHHCCCCcccccCCccc-----CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 4567888999976 45666654 9999999999999999999 9999999999999999999999999998889
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. .+ +.+|+|+.| ++|++++.|+++++
T Consensus 884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEV 925 (943)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHH
Confidence 99999999986 34 579999999 68999999998765
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.66 E-value=2.4e-16 Score=172.68 Aligned_cols=98 Identities=31% Similarity=0.597 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++.+. .||.+|+ ....||||||||++|||+++++|++++||||||+||+.+...+.+.|++
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 4567888888887653 4677775 3456999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
+. +++|+|+++|+++ ..+.||+|++|
T Consensus 504 ~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 504 LA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred hc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 75 6899999999985 45679999875
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.66 E-value=3.8e-16 Score=174.44 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
..++.++++.+++. +..++.++. ||||||||++||++|+.+|++|||||||+|||+.+...+.+.|+++ +.
T Consensus 417 ~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 488 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVKA-----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG 488 (635)
T ss_pred HHHHHHHHHhcCCCHHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence 34677889999995 467777765 9999999999999999999999999999999999999999999886 45
Q ss_pred EEEEEeCCCchHHHhhcCeEEEee-CCcEEE-ecC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLS-RGQTVY-SGS 115 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~-~G~~v~-~G~ 115 (525)
|||+++|+.. .+..+||++++++ +|++.. .|+
T Consensus 489 tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 489 TVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred eEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 9999999976 6888999999998 798764 444
No 358
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.65 E-value=4.9e-16 Score=184.56 Aligned_cols=108 Identities=28% Similarity=0.456 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDII---HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~---~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++ ++++.+||.+. .+..+.+ ||||||||+.||++|+ .+|++++|||||+|||+.++..+++.|++++++
T Consensus 788 ~~l-~~L~~vGL~~l~l~q~~~t-----LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~ 861 (1809)
T PRK00635 788 EKI-HALCSLGLDYLPLGRPLSS-----LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861 (1809)
T ss_pred HHH-HHHHHcCCcchhhcCcccc-----CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 455 47888999875 6777654 9999999999999998 699999999999999999999999999999988
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEee------CCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLS------RGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~------~G~~v~~G~~~~~~ 120 (525)
|.|||+++|++. .+ +.+|+++.|. +|+++..|+++++.
T Consensus 862 G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 862 GHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999986 45 8999999996 78999999987653
No 359
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=7.5e-16 Score=159.76 Aligned_cols=108 Identities=30% Similarity=0.489 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+++++++.+.+||+-..|.+|++ ||-||||||.|-.+|..+|++|||||||+-|-|..+.++++.++.++++|
T Consensus 116 ~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G 190 (501)
T COG3845 116 QARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190 (501)
T ss_pred HHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 3467899999999999888999987 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
+|||++||-.. |+.++|||+.+|.+|+++-.-+
T Consensus 191 ~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 191 KTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999987 7999999999999999987666
No 360
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=5.7e-16 Score=144.80 Aligned_cols=103 Identities=30% Similarity=0.487 Sum_probs=91.6
Q ss_pred HHHHHHHH--cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 6 RVQALIDQ--LGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 6 ~v~~~l~~--l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
...+-++. +||++..++++|- |||||||-+++++|.++.|+||+|||-|+.|||.++..+++.-.++.++ .-
T Consensus 126 ~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl 200 (263)
T COG1101 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 (263)
T ss_pred HHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC
Confidence 34445555 4678889999987 9999999999999999999999999999999999999999999998765 56
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEec
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G 114 (525)
|.+|+||++. +..++.+|.++|++|+||..=
T Consensus 201 TtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 201 TTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred ceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 8999999998 588899999999999999753
No 361
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=9e-16 Score=174.89 Aligned_cols=107 Identities=30% Similarity=0.442 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 6 RVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIH---DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 6 ~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~---~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+..++++.+||.. ..++.+. .|||||+||+.||++|+. +|++++|||||+|||+..+..+.+.|+++.++|
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~-----tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G 881 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPAT-----TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG 881 (924)
T ss_pred HHHHHHHHcCCCchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 4567888999975 3566654 499999999999999997 599999999999999999999999999998889
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999986 34 579999999 78999999987653
No 362
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=6.9e-16 Score=183.32 Aligned_cols=103 Identities=26% Similarity=0.560 Sum_probs=92.6
Q ss_pred HHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 037973 10 LIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM 86 (525)
Q Consensus 10 ~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 86 (525)
.|..+||.+. .|+.+++ |||||+||+.||++|..+| ++++|||||+|||+.++..+.+.|++++++|.|||+
T Consensus 459 ~L~~vGL~~L~ldR~~~t-----LSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIv 533 (1809)
T PRK00635 459 ILIDLGLPYLTPERALAT-----LSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533 (1809)
T ss_pred HHHhccccCCCCCCchhh-----CCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3457788876 5777765 9999999999999999999 899999999999999999999999999988999999
Q ss_pred EeCCCchHHHhhcCeEEEee------CCcEEEecCCCCh
Q 037973 87 SIHQPSYRILGLLDRMIFLS------RGQTVYSGSPMNL 119 (525)
Q Consensus 87 ~~H~~~~~v~~~~d~v~~l~------~G~~v~~G~~~~~ 119 (525)
++|++. +.+.+|+|++|. +|++++.|+++++
T Consensus 534 VeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 534 VEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred EeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 999975 668999999996 7899999987665
No 363
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.64 E-value=8.9e-16 Score=171.92 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCcccccccccC----CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGD----EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~----~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++.++|.+..++..|- ...+.||||||||++||++|+++|++++|||||+|||+.+...+.+.+++
T Consensus 551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--- 627 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--- 627 (659)
T ss_pred HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence 45788899999998766554321 12457999999999999999999999999999999999999999998876
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
.|+|+|+++|+++ ..+.+|++++|+.
T Consensus 628 ~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 628 FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 3899999999986 3578999999974
No 364
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=8.5e-16 Score=148.65 Aligned_cols=93 Identities=19% Similarity=0.184 Sum_probs=80.1
Q ss_pred HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 11 IDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH----------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 11 l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++..++.+..++.++ .+|||||||+++|++++. +|++++|||||+|||+.+...+.+.|++++++
T Consensus 108 l~~g~l~~~l~~~~~-----~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~ 182 (213)
T cd03279 108 LPQGEFDRFLARPVS-----TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE 182 (213)
T ss_pred hhhcchHHHhcCCcc-----ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 344445555565554 499999999999999985 57899999999999999999999999999877
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+.|+|+++|++. .+...+|+++++++|.
T Consensus 183 ~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 183 NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999986 5788899999999874
No 365
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.6e-16 Score=160.57 Aligned_cols=103 Identities=31% Similarity=0.519 Sum_probs=92.2
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 13 QLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 13 ~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
.+++.+-.++.||+.+.| |||||||||+|||+++.+|.+++|||.||.||..+.+.|...|.++++ ++|.|++.|..+
T Consensus 657 Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS 734 (790)
T KOG0056|consen 657 ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS 734 (790)
T ss_pred HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh
Confidence 467888889999986555 799999999999999999999999999999999999999999999986 688888999987
Q ss_pred hHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 93 YRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 93 ~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
. +. .+|.|+++++|+|++.|.-+++
T Consensus 735 T-iv-nAD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 735 T-IV-NADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred h-ee-cccEEEEEeCCeEeecCcHHHH
Confidence 3 44 5999999999999999986654
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=1.7e-15 Score=144.62 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+++++++++. .+..++.++ .||||||||++||++++ .+|++++|||||+|||+..+..+.+.|+++++
T Consensus 94 ~~~~~~~l~~---~~~~~~~~~-----~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~ 165 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQRLS-----LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK 165 (197)
T ss_pred hhhHHHHHhC---CCccccchh-----hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc
Confidence 3567777777 445566554 49999999999999997 46699999999999999999999999999865
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+.|||+++|++. . .+.+|+++.+..
T Consensus 166 -~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 166 -ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred -CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 689999999986 3 468999999975
No 367
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.61 E-value=1.4e-15 Score=166.79 Aligned_cols=86 Identities=31% Similarity=0.545 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++..++++ -.||.+|+.+ ..||||||||++||||++.+|+||+||||||+||+.+...+.+.|++
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G-~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGG-ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhcccc-CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 467888888888765 2478888633 45999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCC
Q 037973 77 IAQSGSIVIMSIHQP 91 (525)
Q Consensus 77 l~~~g~tvi~~~H~~ 91 (525)
+ .+++|+|+++|++
T Consensus 516 ~-~~~~TvIiItHrl 529 (529)
T TIGR02868 516 A-LSGKTVVVITHHL 529 (529)
T ss_pred h-cCCCEEEEEecCC
Confidence 6 3579999999985
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.61 E-value=2e-15 Score=162.86 Aligned_cols=103 Identities=32% Similarity=0.530 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+.+++.++..+|+.+. ++.+++ ||||||+||++|++|+.+|++|+|||||++||..+..-+-+.|++. .| |
T Consensus 132 e~~~~~~L~gLg~~~~-~~~~~~-----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-t 202 (530)
T COG0488 132 EARAEEALLGLGFPDE-DRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-T 202 (530)
T ss_pred HHHHHHHHhcCCCCcc-cCchhh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-c
Confidence 4688899999999887 888876 9999999999999999999999999999999999999999998853 56 9
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSP 116 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~ 116 (525)
+|++||| +.-+-+.|++|+-++.|++. |.|.-
T Consensus 203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred EEEEeCC-HHHHHHHhhheEEecCCceeEecCCH
Confidence 9999999 55788999999999999764 55544
No 369
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=4.6e-15 Score=147.12 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCc--------------------ccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCC
Q 037973 4 KIRVQALIDQLGLR--------------------NAAKTVIGDEGHRGVSGGERRRVSIGIDII----HDPILLFLDEPT 59 (525)
Q Consensus 4 ~~~v~~~l~~l~L~--------------------~~~~~~vg~~~~~glSgGerkRv~ia~~l~----~~p~illlDEPt 59 (525)
.++++++++.+||. +..++. ++.||||||||++||++|+ .+|+++++||||
T Consensus 124 ~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~-----~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt 198 (251)
T cd03273 124 QQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKES-----LTELSGGQRSLVALSLILALLLFKPAPMYILDEVD 198 (251)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhccc-----ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 46888999999986 222333 4569999999999999998 578999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 60 SGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 60 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
+|||+..+..+.+.|++++ +|.++|+++|++ ++.+.+|+++-+.
T Consensus 199 ~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 199 AALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred cCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999999999999999985 488999999994 5788899998775
No 370
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=2.2e-15 Score=181.72 Aligned_cols=96 Identities=26% Similarity=0.436 Sum_probs=83.4
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 21 KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKV-LQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 21 ~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
+|.+|+. ...||||||||++||||+.++|++++|||||++||+.++.++.+. ++++. +|+|+|+++|++. .+ +.+
T Consensus 539 ~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~a 614 (1490)
T TIGR01271 539 KTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKA 614 (1490)
T ss_pred cccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhC
Confidence 4556653 457999999999999999999999999999999999999999985 66664 5899999999986 34 469
Q ss_pred CeEEEeeCCcEEEecCCCChh
Q 037973 100 DRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 100 d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|+|++|++|+++..|+.+++.
T Consensus 615 d~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 615 DKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999987653
No 371
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=3e-15 Score=143.13 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDI----IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+.+++++++. .+..++.++ .||||||||++||+++ +.+|++++|||||+|||..++..+.+.|+++++
T Consensus 90 ~~~~~~~l~~---~~~~~~~~~-----~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 90 QDMARSFLTS---NKAAVRDVK-----TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHhcc---ccccCCccc-----ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 3566777766 555666665 4999999999999999 589999999999999999999999999999865
Q ss_pred c---CCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 80 S---GSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 80 ~---g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+ ++|||+++|++. ++.+ +|+|.+|..|+
T Consensus 162 ~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 162 KQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred cCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 4 358999999987 4665 49999998753
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.60 E-value=2.8e-15 Score=181.30 Aligned_cols=97 Identities=25% Similarity=0.366 Sum_probs=84.2
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHcCCEEEEEeCCCchHHHhh
Q 037973 21 KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI--AQSGSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 21 ~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l--~~~g~tvi~~~H~~~~~v~~~ 98 (525)
+|.+|+. ...||||||||++||||+.++|++++|||||++||+.++..+.+.+.+. ..+|+|+|+++|++. ..+.
T Consensus 751 ~t~ig~~-g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~ 827 (1522)
T TIGR00957 751 RTEIGEK-GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQ 827 (1522)
T ss_pred CceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhh
Confidence 4566653 4579999999999999999999999999999999999999999999764 235799999999986 3455
Q ss_pred cCeEEEeeCCcEEEecCCCChh
Q 037973 99 LDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 99 ~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+|+|++|++|+++..|+.+++.
T Consensus 828 ~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 828 VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred CCEEEEecCCeEEeeCCHHHHH
Confidence 9999999999999999987653
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.60 E-value=3.1e-15 Score=180.79 Aligned_cols=95 Identities=28% Similarity=0.420 Sum_probs=80.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 22 TVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 22 ~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
+.+|. ....||||||||++|||+|..+|++++|||||++||+.++..+++.+.....+|+|+|+++|++. ..+.+|+
T Consensus 774 t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ 850 (1560)
T PTZ00243 774 TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADY 850 (1560)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 34443 34569999999999999999999999999999999999999998754332336899999999986 3467999
Q ss_pred EEEeeCCcEEEecCCCCh
Q 037973 102 MIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 102 v~~l~~G~~v~~G~~~~~ 119 (525)
|++|++|++++.|+.+++
T Consensus 851 ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 851 VVALGDGRVEFSGSSADF 868 (1560)
T ss_pred EEEEECCEEEEecCHHHH
Confidence 999999999999987664
No 374
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=5.3e-15 Score=133.23 Aligned_cols=101 Identities=24% Similarity=0.426 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcC
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA-QSG 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g 81 (525)
+.+..++|+++++.+. .++.+-+ ||||||||++++|-|..-|+||+||||||.||+.+++.|-++|.++- .+.
T Consensus 110 r~aa~~llar~~l~~~~L~k~it~-----lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 110 RAAALDLLARFALPDSILTKNITE-----LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred hHHHHHHHHHcCCchhhhcchhhh-----ccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 3567788999999763 5666654 99999999999999999999999999999999999999999999987 568
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
..++-+||++. +..+.+|+++-+..|++
T Consensus 185 vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 185 VAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred eEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 89999999987 56778999999999876
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=6.3e-15 Score=141.11 Aligned_cols=118 Identities=21% Similarity=0.314 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+++++++++.-+|.+..|.++.+ +|-||+-|++.+.+...+|+||++||-.+-.|+.-+..-.+.++++.+++
T Consensus 123 ei~~~~~eIieFaELG~fi~~Pvkt-----YSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~ 197 (249)
T COG1134 123 EIDEKVDEIIEFAELGDFIDQPVKT-----YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchhh-----ccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence 5677899999999999999999866 99999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHHHh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFFDE 125 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~~~ 125 (525)
+|+|+++|++. .+.++||++++|++|++.+.|+++++.++.++
T Consensus 198 ~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 198 KTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 99999999987 69999999999999999999999998776543
No 376
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=1e-14 Score=144.28 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCccccccc---------ccCC--------CCCCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCC
Q 037973 4 KIRVQALIDQLGLRNAAKTV---------IGDE--------GHRGVSGGERRRVSIGIDIIHD----PILLFLDEPTSGL 62 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~---------vg~~--------~~~glSgGerkRv~ia~~l~~~----p~illlDEPtsgL 62 (525)
++.++++++.+|++...... +.+. .+..||||||||++||++++.+ |+++++||||+||
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 34677899999986432111 1111 1267999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 63 DSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 63 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
|+..+..+.+.|++++++|.++|+++|++ ++.+.+|++++|.+
T Consensus 191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 191 DNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99999999999999987799999999995 46789999999975
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=7.4e-15 Score=144.79 Aligned_cols=76 Identities=18% Similarity=0.370 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEE
Q 037973 28 GHRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
.++.||||||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.+++|+++
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~ 231 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFY 231 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEE
Confidence 456799999999999999974 5899999999999999999999999999865 77888888874 5789999999
Q ss_pred Eee
Q 037973 104 FLS 106 (525)
Q Consensus 104 ~l~ 106 (525)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 986
No 378
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=1.7e-14 Score=131.57 Aligned_cols=112 Identities=18% Similarity=0.350 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 037973 2 KKKIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ- 79 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~- 79 (525)
++++++-+.|+.+||- +.++-.+ +-||-||||||++||||+.+|+|++.||..++||...+.+++++.-++.+
T Consensus 124 ~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek 198 (267)
T COG4167 124 QRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred HHHHHHHHHHHHhccCccccccch-----hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH
Confidence 4678899999999984 3445443 55999999999999999999999999999999999999999999999986
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|.+-|-++.|.. .+.++.|+|++|++|++++.|.+.++
T Consensus 199 ~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 199 QGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred hCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhh
Confidence 5899888888876 68999999999999999999999876
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=6.1e-15 Score=142.47 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=78.8
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 8 QALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 8 ~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++.++|.+..++.++ .+|+|||||++||++++. +|+++++||||+|||+.+...+.+.|++++ ++.+
T Consensus 109 ~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~ 182 (212)
T cd03274 109 GEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQ 182 (212)
T ss_pred CcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCE
Confidence 456667777777777665 499999999999999974 479999999999999999999999999985 4678
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+|+++|++ ++.+.||++++|+.
T Consensus 183 ~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 183 FIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEECcH--HHHHhCCEEEEEEe
Confidence 88888995 58899999999976
No 380
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.53 E-value=2.7e-12 Score=125.97 Aligned_cols=193 Identities=11% Similarity=0.098 Sum_probs=138.0
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHHcCC-CC--ChhhHHHHH-----HHHHHHHHHHHHHHhhhHhhHHHHHH-
Q 037973 230 RSVTNSRRMPELFGIRAGAVIVTGFILATIFWQL-DS--SPKGVQERL-----GFFAFAMSTTFYTCADALPVFLQERY- 300 (525)
Q Consensus 230 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf~~~-~~--~~~~~~~~~-----g~~f~~~~~~~~~~~~~i~~f~~er~- 300 (525)
|+++..+|||..+..-+++-++..+++|.++-+. +. ...+. +.. |.+.+.+..... ..... ...||.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~-~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~ 76 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGV-DYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQF 76 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC-cHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHh
Confidence 6778889999999888898888888898887543 11 11121 221 222211111111 11121 222222
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 037973 301 IFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGVVPHVML 379 (525)
Q Consensus 301 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~ 379 (525)
-..++....=-++..|+++|.+.+++..+++.+++..+.+++.+++.. ++.+++..++..++..++|.+++...++.+.
T Consensus 77 g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 77 GFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred CHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 222333233346789999999999999999999999998888776654 4444455555566778999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHH
Q 037973 380 GYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQ 426 (525)
Q Consensus 380 a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~ 426 (525)
+..+.+.+..+++++||.+.|.+.+|+|++|+.+++|.+|+.|++-.
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999998654
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=4.2e-14 Score=135.89 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEeCCCchHHHhhc
Q 037973 28 GHRGVSGGERRR------VSIGIDIIHDPILLFLDEPTSGLDSTSAY-MVVKVLQRIAQS-GSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 28 ~~~glSgGerkR------v~ia~~l~~~p~illlDEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~ 99 (525)
.++.||+||||| +++|++++.+|+++++||||++||+..+. .+.+.|++++++ |.++|+++|++. ..+.+
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~ 189 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAA 189 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhC
Confidence 345699999996 78899999999999999999999999999 999999999876 889999999975 45679
Q ss_pred CeEEEeeC
Q 037973 100 DRMIFLSR 107 (525)
Q Consensus 100 d~v~~l~~ 107 (525)
|+++.|.+
T Consensus 190 d~i~~l~~ 197 (204)
T cd03240 190 DHIYRVEK 197 (204)
T ss_pred CEEEEEee
Confidence 99999965
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.49 E-value=6.7e-15 Score=133.35 Aligned_cols=112 Identities=27% Similarity=0.432 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH-----DP--ILLFLDEPTSGLDSTSAYMVVKVLQ 75 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~-----~p--~illlDEPtsgLD~~~~~~i~~~l~ 75 (525)
+...++++.+.++|++...+.+. +|||||-|||-+|...+. || ++|++|||.++||......+-.+|.
T Consensus 102 ~a~~i~~i~~~L~l~DKL~Rs~~-----qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~ 176 (248)
T COG4138 102 RTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176 (248)
T ss_pred HHHHHHHHHhhhcccchhhhhhh-----hcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence 44567888899999887777664 599999999999886654 44 7899999999999999999999999
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+++.+|.+|||+.||.+ ...+-+|++.++++|++...|..+++.
T Consensus 177 ~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 177 ALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999988 577789999999999999999998873
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=2.5e-14 Score=133.12 Aligned_cols=115 Identities=27% Similarity=0.432 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
+++++-++|..+|+.+..|-. ..++..|.-||-|+|.||.|++..|++|+.||||+.+|+.++.++..+|.++.. +|
T Consensus 132 rKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred hHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 567888999999998877744 456778999999999999999999999999999999999999999999999986 58
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
.||++++||.. .+.+.||++-+|.-|+-++.++.+++.
T Consensus 210 TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 210 TTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred ceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHh
Confidence 88999999987 589999999999999999999987764
No 384
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.3e-14 Score=126.14 Aligned_cols=100 Identities=28% Similarity=0.428 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
.+.++.+++.+|++.+..=.. .|...||||+|||+||+.++.|=+||+|||||+.||..++.-++++|++-..+|.
T Consensus 128 a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga 203 (235)
T COG4778 128 ARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGA 203 (235)
T ss_pred HHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCc
Confidence 356788899999997654332 2345999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
.+|-+-||- +.-...+||++-+..
T Consensus 204 AlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 204 ALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred eEEEeeccH-HHHHHHhhheeeccc
Confidence 999999994 345568999988764
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=1e-13 Score=161.09 Aligned_cols=114 Identities=29% Similarity=0.438 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++|-+++++...|++.. .|.||+.+ -.||||||||+++|||+=+|.||++||.|.|.+|++...++.+..-+
T Consensus 610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~ 688 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR 688 (1381)
T ss_pred HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH
Confidence 56777888887776533 45566533 34899999999999999999999999999999999999999977555
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
..-+++|+|++|||. +..+.+|.|++|++|++...|+.+++.
T Consensus 689 ~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 689 GLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 455689999999986 467889999999999999999998875
No 386
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-13 Score=126.58 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
...+.+.++.+||....|.+++. ||-||||||+||+-+++.+++-|||||+++||......+-.++..-+.+|..
T Consensus 108 ~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGi 182 (209)
T COG4133 108 AATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182 (209)
T ss_pred hhhHHHHHHHcCcccccccchhh-----cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCE
Confidence 45788999999999999999986 9999999999999999999999999999999999999999999998899999
Q ss_pred EEEEeCCCch
Q 037973 84 VIMSIHQPSY 93 (525)
Q Consensus 84 vi~~~H~~~~ 93 (525)
||.+||||..
T Consensus 183 VllttHq~l~ 192 (209)
T COG4133 183 VLLTTHQPLP 192 (209)
T ss_pred EEEecCCccC
Confidence 9999999874
No 387
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.45 E-value=3e-13 Score=127.06 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 30 RGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
+-+|||||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++. ..+.+|+++.+
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i 170 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGV 170 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEE
Confidence 349999999999999996 699999999999999999999999999999887899999999975 45689999999
Q ss_pred eC
Q 037973 106 SR 107 (525)
Q Consensus 106 ~~ 107 (525)
.+
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 76
No 388
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=3.1e-13 Score=130.69 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCCchHHHhhcC-
Q 037973 28 GHRGVSGGERRRVSIGIDI----IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G-SIVIMSIHQPSYRILGLLD- 100 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l----~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~~~H~~~~~v~~~~d- 100 (525)
.+..||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++|+.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 3567999999998877554 5799999999999999999999999999999876 6 47999999976 3556666
Q ss_pred -eEEEeeCCcE
Q 037973 101 -RMIFLSRGQT 110 (525)
Q Consensus 101 -~v~~l~~G~~ 110 (525)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888898863
No 389
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.42 E-value=6e-11 Score=116.18 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=119.4
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHHHHHHHHHHHhhhHhhHHHHH--HHHHHHhcCCCCC
Q 037973 236 RRMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQE-RLGFFAFAMSTTFYTCADALPVFLQER--YIFMRETAHNAYR 312 (525)
Q Consensus 236 ~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~i~~f~~er--~v~~rE~~~g~Y~ 312 (525)
+|||.....-+.+-+++-++.+.+|-+.. +....+. ..|.+.+.... +.....--....|| ..+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 69999988888888887777777765521 1111211 11222111111 11111111222332 2333333333 37
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh--HHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 037973 313 RSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG--FFFYFLMMFASFWAGNSFVTFLSGVVP---HVMLGYTIVVAI 387 (525)
Q Consensus 313 ~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~--f~~f~l~~~l~~~~~~s~~~~is~~~~---~~~~a~~~~~~~ 387 (525)
+..|+++|.+..++..++...++. +++++.|++.. ....++.+.+....+..++.+++.+.+ +.+.+..+.+..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 889999999998888877765554 55667788743 333334444445555667777777764 445557777788
Q ss_pred HHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHH
Q 037973 388 LAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQ 426 (525)
Q Consensus 388 ~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~ 426 (525)
..+++++||.+.|.+++|.|++|+.+++|++|+.+++-.
T Consensus 157 ~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~ 195 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQ 195 (232)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHH
Confidence 888999999999999999999999999999999997653
No 390
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.42 E-value=5.5e-12 Score=121.32 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=119.2
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 037973 312 RRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAY 390 (525)
Q Consensus 312 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~ 390 (525)
+.+.++++|.+..++..++++++...+.|++.|++.+ +..+++.+++..++..+++.+++++.++...+ +....+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~~~ 135 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLLVL 135 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHHHH
Confidence 5567899999999999999999999999999999865 77777777788888899999999999876543 33444556
Q ss_pred HHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCccccccccccccCCCCCCCchhHHHHHHHhhhcccccc
Q 037973 391 FLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPVKCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNMR 470 (525)
Q Consensus 391 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 470 (525)
+++++|.+.|.+.+|+|++|+.+++|.+|+.+++-...+.+.
T Consensus 136 ~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-------------------------------------- 177 (208)
T TIGR03062 136 QLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-------------------------------------- 177 (208)
T ss_pred HHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc--------------------------------------
Confidence 777899999999999999999999999999999875554321
Q ss_pred ccccccccChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 037973 471 ITTSTCLTTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLL 517 (525)
Q Consensus 471 ~~~~~C~~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~ 517 (525)
..+.|.++++++++.+++.++++...|
T Consensus 178 --------------------~~~~~~~~~~L~~~~~v~~~la~~~~~ 204 (208)
T TIGR03062 178 --------------------DGTLWQAVAVLLLILVVFLALSLLSAR 204 (208)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112467889999999988888777655
No 391
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=4.9e-13 Score=138.99 Aligned_cols=111 Identities=23% Similarity=0.405 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 3 KKIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
.++...++++.++.... .+.++ +.||||.+||+-+||+|..+|++|+..+||.|||..++..+.+.|.+.+++|
T Consensus 379 i~~~a~~li~~fdVr~~~~~~~a-----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G 453 (501)
T COG3845 379 IRKFARELIEEFDVRAPSPDAPA-----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453 (501)
T ss_pred HHHHHHHHHHHcCccCCCCCcch-----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence 45677889999988632 23333 5599999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.|++++.+.. |++.++|||.+|++|+++...++++.
T Consensus 454 ~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 454 KAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred CEEEEEehhHH-HHHHhhheeeeeeCCceecccccccC
Confidence 99999999976 89999999999999999998888764
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.42 E-value=5.1e-13 Score=137.01 Aligned_cols=97 Identities=29% Similarity=0.459 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
.+.+++++.|+|++..|+-+.+ |||||-||++||.+++++.+++++|||||-||...+..+.+.++++++.+++|
T Consensus 192 g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~V 266 (591)
T COG1245 192 GKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266 (591)
T ss_pred CcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeE
Confidence 3678999999999999999876 99999999999999999999999999999999999999999999999989999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeC
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
|++.||.. .+--+.|-|.++..
T Consensus 267 iVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEechHH-HHHHhhheeEEEec
Confidence 99999986 35556787777654
No 393
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.39 E-value=1.9e-10 Score=114.26 Aligned_cols=196 Identities=11% Similarity=0.054 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHH--HHHH-hhhHhhHHHHH
Q 037973 224 MVVLSQRSVTNSRRM-PELFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTT--FYTC-ADALPVFLQER 299 (525)
Q Consensus 224 ~~~L~~R~~~~~~R~-~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~--~~~~-~~~i~~f~~er 299 (525)
...+.+|+++..+|+ |......+++-++.-+++|..+-....+..+ .+...++.-.+..+ .+.+ .....
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~------ 79 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTASTFETIY------ 79 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 455679999999999 9988888898888888999887643221112 22222221121111 1111 11111
Q ss_pred HHHHHHhcCCC--------CChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh--HHHHHHHHHHHHHHHHHHHHH
Q 037973 300 YIFMRETAHNA--------YRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG--FFFYFLMMFASFWAGNSFVTF 369 (525)
Q Consensus 300 ~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~--f~~f~l~~~l~~~~~~s~~~~ 369 (525)
..+.|||.+|. -++..+.++|++.+.-..++..++...+.++ .|..+. .+..+.++++..++..++|.+
T Consensus 80 ~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 80 ATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEWWSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444443 2678899999999987777777665555443 344332 444444555566667789999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHH
Q 037973 370 LSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQS 427 (525)
Q Consensus 370 is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~n 427 (525)
++.+.++.+.+..+...++.+++.+||.+.|.+++|.|++++.+++|++|+.|++-..
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 9999999998888888888999999999999999999999999999999999986533
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.39 E-value=8.3e-13 Score=138.12 Aligned_cols=107 Identities=23% Similarity=0.408 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGL-RNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L-~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+.++-++|..+|. ++.+++.+. ++|||+|+|+++|++|..+|++|+|||||+|||..+..-+-+.|.+.-+.
T Consensus 198 ~~k~~~il~glgf~~~m~~k~~~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-- 270 (614)
T KOG0927|consen 198 EAKAAKILHGLGFLSEMQDKKVK-----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-- 270 (614)
T ss_pred HHHHHHHHHhcCCCHhHHHHHhh-----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--
Confidence 3456667777764 567777765 49999999999999999999999999999999999999988888775321
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCc-EEEecCCCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQ-TVYSGSPMN 118 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~-~v~~G~~~~ 118 (525)
++++++|. .+.+-.+|.+|+-+.+++ +.|.|+-++
T Consensus 271 ~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 271 ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred eEEEEecc-hhhhhhHhhhhheecccceeeecCCHHH
Confidence 67777777 557888999999999999 556666544
No 395
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.38 E-value=1.3e-12 Score=141.16 Aligned_cols=103 Identities=24% Similarity=0.375 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+..+...|..++++. ...++|+. ||||||.|+.+|..++.+|.+|+|||||+.||..+...+-+.|++. ..
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v~~-----LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G 487 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG 487 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCchhh-----cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC
Confidence 467888999999974 45677766 9999999999999999999999999999999999999999999876 35
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEe-cCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYS-GSP 116 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~-G~~ 116 (525)
|||+++||.. -+..++++++.+.+ ++..+ |..
T Consensus 488 tvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 488 TVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred eEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCH
Confidence 8999999965 68999999999998 55443 553
No 396
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=2.4e-12 Score=149.81 Aligned_cols=113 Identities=20% Similarity=0.378 Sum_probs=95.4
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++|+..+|.+. .|+.|. +....+|-||||-+.+||||+++++||+|||+|+..|+++-..|-++||+
T Consensus 1242 D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1242 DDEIWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred HHHHHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 4567777887777653 334443 34467999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+-++.|||.+-|... .+.+ +|||++|++|+++++|+|.++.
T Consensus 1321 -~F~dcTVltIAHRl~-TVmd-~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1321 -EFKDCTVLTIAHRLN-TVMD-SDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred -HhcCCeEEEEeeccc-hhhh-cCeEEEeeCCeEeecCChHHHH
Confidence 346899999999987 3554 9999999999999999998763
No 397
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2.3e-12 Score=129.60 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 31 GVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
.||||||||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +.+.+|+++.+.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 789999999985 567999999998
Q ss_pred CCc
Q 037973 107 RGQ 109 (525)
Q Consensus 107 ~G~ 109 (525)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 863
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.34 E-value=7.1e-13 Score=126.97 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVV-KVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
..+|+||||+..++++ +.+|+++++|||++|||+.....+. ..++++.+.|.++|+++|+. ++.+++|++..+.+|
T Consensus 90 s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g 166 (200)
T cd03280 90 STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENA 166 (200)
T ss_pred chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEE
Confidence 3489999999999987 5899999999999999999999996 47888877789999999984 578999999999999
Q ss_pred cEEEec
Q 037973 109 QTVYSG 114 (525)
Q Consensus 109 ~~v~~G 114 (525)
++++.+
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 998874
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.33 E-value=4.2e-12 Score=117.48 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 31 GVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
++|+||+||++++++|.. +|+++++|||++|+|+.....+.+.++++.+++.++|++||++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 599999999999999987 78999999999999999999999999998766889999999975 566799999986
Q ss_pred C
Q 037973 107 R 107 (525)
Q Consensus 107 ~ 107 (525)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 5
No 400
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=6.9e-12 Score=136.67 Aligned_cols=109 Identities=30% Similarity=0.495 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+.-+.|.++||.-. ..|.+. -.|||||.||+-+|.+|.... -+++|||||+||......++++.|.+|.++|.
T Consensus 801 rkLqtL~dVGLgYi---~LGQpa-tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLGQPA-TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecCCcc-ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44456777888643 345432 359999999999999998866 99999999999999999999999999999999
Q ss_pred EEEEEeCCCchHHHhhcCeEEEee------CCcEEEecCCCChh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLS------RGQTVYSGSPMNLP 120 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~------~G~~v~~G~~~~~~ 120 (525)
|||++.|++ ++.+-+|.|+=|- .|++|+.|+|+++.
T Consensus 877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva 918 (935)
T COG0178 877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVA 918 (935)
T ss_pred EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHH
Confidence 999999997 4888999999983 47999999998874
No 401
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.32 E-value=3.7e-12 Score=140.38 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 30 RGVSGGERRRVSIGIDIIHD----PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~----p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
+.+||||+||++||++++.. |+++++|||++|||+.++..+.+.|+++++ +++||++||+|. +...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 56899999999999999985 699999999999999999999999999975 899999999985 45689999999
Q ss_pred eCCc
Q 037973 106 SRGQ 109 (525)
Q Consensus 106 ~~G~ 109 (525)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9875
No 402
>PRK10869 recombination and repair protein; Provisional
Probab=99.29 E-value=7.4e-12 Score=137.09 Aligned_cols=77 Identities=27% Similarity=0.499 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 30 RGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
+.+||||++|++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 5689999999999999997 5899999999999999999999999999975 689999999985 56899999999
Q ss_pred eCCc
Q 037973 106 SRGQ 109 (525)
Q Consensus 106 ~~G~ 109 (525)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8854
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.29 E-value=9.2e-12 Score=127.92 Aligned_cols=94 Identities=27% Similarity=0.428 Sum_probs=82.1
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEE
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVI 85 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi 85 (525)
-.++++-|+|+...++.+.+ |||||.|||+||.+|..++++.+||||++.||++.+..+-+.||++.. .++|.+
T Consensus 436 ~~ei~~pl~l~~i~e~~v~~-----LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~ 510 (591)
T COG1245 436 KTEIVKPLNLEDLLERPVDE-----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTAL 510 (591)
T ss_pred HHhhcCccchHHHHhccccc-----CCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEE
Confidence 34677788999888888865 999999999999999999999999999999999999999999999986 478999
Q ss_pred EEeCCCchHHHhhcCeEEEee
Q 037973 86 MSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~ 106 (525)
++-||.- -+--+.||+++..
T Consensus 511 vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 511 VVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred EEeccee-hhhhhhceEEEEe
Confidence 9999975 3555678877654
No 404
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=9.1e-12 Score=110.49 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHc
Q 037973 2 KKKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI-AQS 80 (525)
Q Consensus 2 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l-~~~ 80 (525)
.+++.++..|++.||+...++-.. .||||||-||++-|+|+..|+.++||||.|.||..-+.+..+..-.- ...
T Consensus 110 aRr~~a~aAL~~~gL~g~f~~dP~-----tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 110 ARRNAANAALERSGLDGAFHQDPA-----TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHhhHHHHHHHhccchhhhcChh-----hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 466788999999999998887654 49999999999999999999999999999999999999999986554 446
Q ss_pred CCEEEEEeCCCch
Q 037973 81 GSIVIMSIHQPSY 93 (525)
Q Consensus 81 g~tvi~~~H~~~~ 93 (525)
|..++++|||..+
T Consensus 185 giPtv~VTHD~~D 197 (213)
T COG4136 185 GIPTVQVTHDLQD 197 (213)
T ss_pred CCCeEEEeccccc
Confidence 8889999999653
No 405
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.27 E-value=3.5e-09 Score=105.06 Aligned_cols=200 Identities=12% Similarity=0.067 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHcCC-CCC---h-hhHHHHH-----HHHHHHHHHHHHHHhh
Q 037973 221 WKEMVVLSQRSVTNSRRMPELFGIRAGAVIVTGFILATIFWQL-DSS---P-KGVQERL-----GFFAFAMSTTFYTCAD 290 (525)
Q Consensus 221 ~~Q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf~~~-~~~---~-~~~~~~~-----g~~f~~~~~~~~~~~~ 290 (525)
++++..+.+|.++...|||..+...+++-++.-+++|.+|-.. +.+ . .+..+.. |++.+.+.. .+..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~---~~~~ 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLF---NGMQ 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHH---HHHH
Confidence 4689999999999999999999999999999999999998542 110 0 0111111 221111111 1111
Q ss_pred hHhhHHHHHH--HHHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh---HHHHHHHHHHHHHHHHH
Q 037973 291 ALPVFLQERY--IFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG---FFFYFLMMFASFWAGNS 365 (525)
Q Consensus 291 ~i~~f~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~---f~~f~l~~~l~~~~~~s 365 (525)
.-.....||. .+.+=+... .++..+.+++++...-..+++.++..++.+. .|.+.+ ++.....+++..+...+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111222222 333333333 4778899999999988877776665555443 355432 33333444555566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCC---CccchhhhhhCcchHHHHHHH
Q 037973 366 FVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRI---PPYWIWFHYLSLVKYPYEAVL 425 (525)
Q Consensus 366 ~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiSp~~y~~~al~ 425 (525)
+|.+++.++++.+.+..+.+.++.+++..+|.+.|.+.+ |.|++|+.++||+.|..|++-
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 999999999998877788888888899999999998776 789999999999999998764
No 406
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.9e-11 Score=143.92 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=73.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHh
Q 037973 28 GHRGVSGGERRRVSIGIDIIH----------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILG 97 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~ 97 (525)
.++.|||||++|+++|++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 357799999999999999985 79999999999999999999999999999888999999999987 5888
Q ss_pred hcCeEEEeeCC
Q 037973 98 LLDRMIFLSRG 108 (525)
Q Consensus 98 ~~d~v~~l~~G 108 (525)
++|+|.++..|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999753
No 407
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.3e-11 Score=136.41 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHh
Q 037973 29 HRGVSGGERRRVSIGIDII----------HDPILLFLDEPT-SGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILG 97 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~----------~~p~illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~ 97 (525)
+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.+||+++|++. ...
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 3569999999999999887 599999999998 789999999999999998 5889999999964 557
Q ss_pred hcCeEEEeeC-CcE
Q 037973 98 LLDRMIFLSR-GQT 110 (525)
Q Consensus 98 ~~d~v~~l~~-G~~ 110 (525)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999986 543
No 408
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.21 E-value=2.6e-11 Score=130.98 Aligned_cols=101 Identities=27% Similarity=0.431 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCcccccccccC-CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGD-EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~-~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++.+.++|.++||.+..++.=+. +..+-||+|||||+++||.|+++|++++|||.|++||+.+...+.+++++-. .+.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence 46788999999999887764322 3567899999999999999999999999999999999999999999998833 478
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
|||.+.|++. +..+.++.+-+.+
T Consensus 566 tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 566 TVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred EEEEeccchh--hHHHHhhheeecc
Confidence 9999999986 5666777665544
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.3e-11 Score=124.13 Aligned_cols=100 Identities=27% Similarity=0.401 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++.+++-+..+||+. .+...+ ++||||||-||.+|.....+|-+|+|||||+.||-.+...+.+.|+.. +.
T Consensus 459 ~ee~r~hl~~~Gl~g~la~~si-----~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G 530 (582)
T KOG0062|consen 459 EEEIRRHLGSFGLSGELALQSI-----ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG 530 (582)
T ss_pred HHHHHHHHHhcCCCchhhhccc-----cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC
Confidence 456778899999975 333334 459999999999999999999999999999999999988888888775 34
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEE
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVY 112 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~ 112 (525)
.|||++|+-+ -+..+|+.+.+.++|++.-
T Consensus 531 GVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 531 GVVLVSHDEE-FISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence 6999999965 6888999999999999863
No 410
>PRK15066 inner membrane transport permease; Provisional
Probab=99.20 E-value=1.9e-08 Score=100.13 Aligned_cols=204 Identities=11% Similarity=0.091 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHH--HHHhh-hHhhHH
Q 037973 221 WKEMVVLSQRSVTNSRRMPEL-FGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMSTTF--YTCAD-ALPVFL 296 (525)
Q Consensus 221 ~~Q~~~L~~R~~~~~~R~~~~-~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~~~--~~~~~-~i~~f~ 296 (525)
|+-++.+.+|+.+...||+.. +..-+++.++..+++|.++-....+..+. +..-.++-.+.... ..+.. ....+.
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~-~y~~fl~pGll~~~~~~~~~~~~~~~i~ 85 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF-SYMQFIVPGLIMMSVITNSYSNVASSFF 85 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999864 34444555566666776653211111111 22211211111111 11111 122233
Q ss_pred HHHHHH-HHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037973 297 QERYIF-MRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGVV 374 (525)
Q Consensus 297 ~er~v~-~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~~ 374 (525)
.+|..= .++...---++..+.+++++...-..++..++..++.+...|.+.. ...+...+++...+....+.+++.+.
T Consensus 86 ~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~ 165 (257)
T PRK15066 86 SAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFA 165 (257)
T ss_pred HHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333110 1111122347788999999988777666666665555555566643 22233333333333334578888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHH
Q 037973 375 PHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVL 425 (525)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~ 425 (525)
++.+....+.+.++.+++..||.+.|.+++|.|++|+.++||++|..|++=
T Consensus 166 ~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R 216 (257)
T PRK15066 166 KSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFR 216 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHH
Confidence 888777778888888999999999999999999999999999999998764
No 411
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.7e-11 Score=127.64 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
++..+++|..+|.+. .+..++++ +|||=|-|+++||||..+||||+|||||+.||..+..=+-+.|++. ..
T Consensus 175 ~ei~~~~L~glGFt~emq~~pt~s-----lSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~ 246 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEMQLQPTKS-----LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KI 246 (582)
T ss_pred HHHHHHHHHhCCCCHHHHhccccc-----cCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---Cc
Confidence 344555888899875 44555554 9999999999999999999999999999999999999999888775 37
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcE-EEecCC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQT-VYSGSP 116 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~-v~~G~~ 116 (525)
|+|+++||- .-+-+.|..|+.+++-++ .|.|+-
T Consensus 247 T~liVSHDr-~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 247 TSLIVSHDR-NFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred eEEEEeccH-HHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 999999994 467788999999888665 355644
No 412
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.17 E-value=3.2e-11 Score=126.36 Aligned_cols=104 Identities=23% Similarity=0.387 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 3 KKIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+.+.+..+|.++||+. ..+.+++ .||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+. .
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~-----~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~ 556 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMS-----QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---P 556 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchh-----hcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---C
Confidence 4567888999999984 4555654 59999999999999999999999999999999999999988888764 3
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcE-EEecC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQT-VYSGS 115 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~-v~~G~ 115 (525)
.+||.++|+.. -|-+.+++|..-.+|.+ .+.|.
T Consensus 557 Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 557 GGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred Cceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 57999999987 58889999999988754 45554
No 413
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.13 E-value=9.4e-11 Score=104.81 Aligned_cols=57 Identities=33% Similarity=0.704 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTS 60 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPts 60 (525)
.+++++++++.+++.+..++.++... +.||||||||+.||++|+.+|++++|||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 35679999999999998888885533 6799999999999999999999999999996
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.09 E-value=3.9e-10 Score=123.26 Aligned_cols=103 Identities=28% Similarity=0.474 Sum_probs=86.6
Q ss_pred HHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 037973 11 IDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHD--PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMS 87 (525)
Q Consensus 11 l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~ 87 (525)
|-.+||... .++..++ |||||.||+-+|..+-++ --+++||||+-||.+..-.++++.|++|.+.|.|+|++
T Consensus 465 L~~VGL~YLtL~R~a~T-----LSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVV 539 (935)
T COG0178 465 LVDVGLGYLTLSRSAGT-----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVV 539 (935)
T ss_pred HHHcCcCcccccccCCC-----cChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEE
Confidence 334566543 3444444 999999999999999774 34679999999999999999999999999999999999
Q ss_pred eCCCchHHHhhcCeEEEe------eCCcEEEecCCCChh
Q 037973 88 IHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNLP 120 (525)
Q Consensus 88 ~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~~ 120 (525)
.||+ ++...+|+|+=| +.|+|++.|+|+++.
T Consensus 540 EHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 540 EHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred ecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 9996 578889999988 357999999998764
No 415
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=1.1e-10 Score=113.48 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCchHHHhhcCeEE
Q 037973 30 RGVSGGERRRVSIGIDI--IHDPILLFLDEP---TSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l--~~~p~illlDEP---tsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
+++|.|+++++.++.++ +++|++++|||| |++||+...... .++.+.+ .|.++|++||+ .++.+++|++.
T Consensus 88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~ 163 (222)
T cd03285 88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVP 163 (222)
T ss_pred cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCC
Confidence 56999999999999999 899999999999 999999888543 3355554 47899999996 46899999999
Q ss_pred EeeCCcEEEecCC
Q 037973 104 FLSRGQTVYSGSP 116 (525)
Q Consensus 104 ~l~~G~~v~~G~~ 116 (525)
.+++|++...++.
T Consensus 164 ~i~~g~~~~~~~~ 176 (222)
T cd03285 164 NVKNLHVTALTDD 176 (222)
T ss_pred CeEEEEEEEEEeC
Confidence 9999999887653
No 416
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.6e-10 Score=131.41 Aligned_cols=78 Identities=28% Similarity=0.342 Sum_probs=68.4
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 28 GHRGVSGGERRRV------SIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 28 ~~~glSgGerkRv------~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
.+..|||||++++ ++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 3467999999954 5556778899999999999999999999999999998877889999999974 6789999
Q ss_pred EEEeeC
Q 037973 102 MIFLSR 107 (525)
Q Consensus 102 v~~l~~ 107 (525)
++.|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 417
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.02 E-value=8.3e-10 Score=129.72 Aligned_cols=79 Identities=24% Similarity=0.232 Sum_probs=68.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 28 GHRGVSGGERRRVSIGIDIIH--------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~--------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
.++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+.+.|++|++++|.+. -...+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhcc
Confidence 457799999999999999995 89999999999999999999999999999989999999999754 344455
Q ss_pred CeEEEeeC
Q 037973 100 DRMIFLSR 107 (525)
Q Consensus 100 d~v~~l~~ 107 (525)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 56666554
No 418
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=6e-10 Score=111.74 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc-
Q 037973 30 RGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL- 99 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~- 99 (525)
+-+|+||||++.+|++|+ .+|+++++||||++||+..+..+.+.++++. . +++++|+.. .+.+.+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccchhc
Confidence 447999999999999985 7999999999999999999999999998753 3 555555544 466666
Q ss_pred --CeEEEeeCCcE
Q 037973 100 --DRMIFLSRGQT 110 (525)
Q Consensus 100 --d~v~~l~~G~~ 110 (525)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999986
No 419
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.98 E-value=8.6e-10 Score=111.81 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR-IAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~ 82 (525)
.+.++..|+++.|.|.-...=|+-.+-.||-|||||+++-.|++-+-+|+++||=-+.-||.-++.+.+.+-. +.++|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 3578899999999875443333333456999999999999999999999999999999999999999887655 456899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
||+.++||.. -|..+||++.+.+|++++.-+
T Consensus 501 TI~aIsHDd~--YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 501 TIFAISHDDH--YFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred eEEEEecCch--hhhhHHHHHHHhcCceeeccc
Confidence 9999999954 688999999999999987643
No 420
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=9.8e-10 Score=112.32 Aligned_cols=94 Identities=26% Similarity=0.377 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 85 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 85 (525)
.....|-.+||...++|+- .+.||||||-||++|..-+..|+||||||||++||.++...+-+.|+++. ..||
T Consensus 683 ~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi 755 (807)
T KOG0066|consen 683 EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVI 755 (807)
T ss_pred HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEE
Confidence 4456677888887777752 35699999999999999999999999999999999999999999988863 4699
Q ss_pred EEeCCCchHHHhhcCeEEEeeC
Q 037973 86 MSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+++|+-+. +.+---.+.++.+
T Consensus 756 ~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 756 MVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred EEecccce-eeecCceEEEEcc
Confidence 99999764 3333333444443
No 421
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=124.51 Aligned_cols=77 Identities=29% Similarity=0.381 Sum_probs=66.5
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-C-CEEEEEeCCCchHHHhh
Q 037973 28 GHRGVSGGERRRVSI------GIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-S-G-SIVIMSIHQPSYRILGL 98 (525)
Q Consensus 28 ~~~glSgGerkRv~i------a~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~-g-~tvi~~~H~~~~~v~~~ 98 (525)
.+..||||||+|+++ |++++.+|++++|||||+|||+.....+.+.++...+ . | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356799999999976 4888999999999999999999999999999987543 3 3 48999999975 4578
Q ss_pred cCeEEEee
Q 037973 99 LDRMIFLS 106 (525)
Q Consensus 99 ~d~v~~l~ 106 (525)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 422
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.92 E-value=2.1e-07 Score=92.39 Aligned_cols=152 Identities=15% Similarity=0.218 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHH
Q 037973 314 SSYVLSHTLTSLPALVFLSFAFSAITFWAVGLD--GGFFFYFLMMFASFWAGNSFVTFLS-GVVPHVMLGYTIVVAILAY 390 (525)
Q Consensus 314 ~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~--~~f~~f~l~~~l~~~~~~s~~~~is-~~~~~~~~a~~~~~~~~~~ 390 (525)
..+++++.+...-...+...+...+..+..|.. +++..+..++.+......++|.+++ ...++.+.+..+...+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 557777777777666666666666666666633 3366666666666667777887666 3667778887888888889
Q ss_pred HHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhCCCccccccccccccCCCCCCCchhHHHHHHHhhhcccccc
Q 037973 391 FLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFGNPVKCFVRGVQIFDNTPLAAVPTAMKVRLLETLGRTLNMR 470 (525)
Q Consensus 391 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 470 (525)
+.+++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+..
T Consensus 211 ~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~------------------------------------- 253 (286)
T COG0842 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR------------------------------------- 253 (286)
T ss_pred HHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------------------------------------
Confidence 9999999999999999999999999999999988754443321
Q ss_pred ccccccccChHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 037973 471 ITTSTCLTTGVDILDKEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKN 522 (525)
Q Consensus 471 ~~~~~C~~~G~~~L~~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~ 522 (525)
..+.|.++++++++.+++.+++...+|...+.
T Consensus 254 --------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 --------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11166789999999999999998888876653
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=3.3e-09 Score=127.68 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEeCCCchHHHhh
Q 037973 30 RGVSGGERR------RVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-----SGSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 30 ~glSgGerk------Rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~~~~v~~~ 98 (525)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||+++|++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 469999999 99999999999999999999999999999999999988742 3789999999986 46665
Q ss_pred c
Q 037973 99 L 99 (525)
Q Consensus 99 ~ 99 (525)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 424
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.85 E-value=7.2e-09 Score=96.78 Aligned_cols=109 Identities=23% Similarity=0.326 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 83 (525)
+|-+++++.|.++-.. ++ +.+|-||||||.|++.|+.--++|+|||-|-.||..++.++++.+|+-++ +|.|
T Consensus 128 ~Rre~LI~iLDIdl~W--Rm-----HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 128 ERREKLIDILDIDLRW--RM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred hHhhhhhhheeccceE--EE-----eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 4556677777664221 12 23899999999999999999999999999999999999999999999886 4889
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPH 121 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~ 121 (525)
|+-.||--. -+.....++..++.|+++-.-+.+.+.+
T Consensus 201 IVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 201 IVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred EEEEeeecc-chhhcchhEEEecCCeeeeccccchhhh
Confidence 999999865 4788899999999999987655555443
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.84 E-value=7.7e-09 Score=99.19 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
+++++ ||++.+.+++.+|+++++|||++|+|+.....+.. .++.+.+.+.++|+++|++ ++.+.+|++..+..|++
T Consensus 92 ~~~e~-~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~ 168 (202)
T cd03243 92 FMAEL-LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHM 168 (202)
T ss_pred HHHHH-HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEE
Confidence 45554 55777788899999999999999999998888765 5677777789999999985 46778999999999999
Q ss_pred EEecCCCCh
Q 037973 111 VYSGSPMNL 119 (525)
Q Consensus 111 v~~G~~~~~ 119 (525)
...++..+.
T Consensus 169 ~~~~~~~~~ 177 (202)
T cd03243 169 EELITTGGL 177 (202)
T ss_pred EEEecCCee
Confidence 998876554
No 426
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.84 E-value=4.2e-09 Score=125.84 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=66.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEE
Q 037973 28 GHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
.+..||||||+|++||++++ ..|++++|||||+|||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 35679999999999999984 57799999999999999999999999999875 478999999986 456799987
Q ss_pred Eee
Q 037973 104 FLS 106 (525)
Q Consensus 104 ~l~ 106 (525)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 427
>PRK00064 recF recombination protein F; Reviewed
Probab=98.81 E-value=9.7e-09 Score=107.22 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 29 HRGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
...+|+||+|++.+|..|+ .+|+|++||||+++||+..+..+++.++++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4568999999999999886 699999999999999999999999998764 347888888865 355553
Q ss_pred --CeEEEeeCCcE
Q 037973 100 --DRMIFLSRGQT 110 (525)
Q Consensus 100 --d~v~~l~~G~~ 110 (525)
+++..+.+|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999986
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.79 E-value=3.9e-09 Score=99.83 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVV-KVLQRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.+|+|++|...+. ..+++|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+---+..+
T Consensus 61 ~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 3677666533332 234599999999999999999887765 556777764 88999999997 477788764444444
Q ss_pred cEEEe
Q 037973 109 QTVYS 113 (525)
Q Consensus 109 ~~v~~ 113 (525)
+....
T Consensus 138 ~~~~~ 142 (185)
T smart00534 138 HMSAD 142 (185)
T ss_pred EEEEE
Confidence 44433
No 429
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.6e-08 Score=117.74 Aligned_cols=78 Identities=28% Similarity=0.444 Sum_probs=67.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEeCCCchHH
Q 037973 29 HRGVSGGERR------RVSIGIDIIHD-----P-ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS-IVIMSIHQPSYRI 95 (525)
Q Consensus 29 ~~glSgGerk------Rv~ia~~l~~~-----p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~~~H~~~~~v 95 (525)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4679999999 88888888863 3 67999999999999999999999999987665 7999999985 4
Q ss_pred HhhcCeEEEeeCC
Q 037973 96 LGLLDRMIFLSRG 108 (525)
Q Consensus 96 ~~~~d~v~~l~~G 108 (525)
...+|+++.+.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999753
No 430
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.74 E-value=1.4e-08 Score=121.39 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 29 HRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
+..||||||++++||.+++. .|++++||||++|||+.....+.++|+++++ +..+|++||++. +...+|+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence 46799999999999999985 6799999999999999999999999999865 467999999974 6689999987
Q ss_pred eeC
Q 037973 105 LSR 107 (525)
Q Consensus 105 l~~ 107 (525)
+..
T Consensus 1149 ~~~ 1151 (1164)
T TIGR02169 1149 VTM 1151 (1164)
T ss_pred EEE
Confidence 754
No 431
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=4.4e-09 Score=107.60 Aligned_cols=103 Identities=26% Similarity=0.410 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+.|..++|.-||.+. ..+++.- ..|||=|-||++||||-..|-+|+|||||+.||-....-+-..|+.+. +
T Consensus 389 EarARRILAGLGFskEMQ~rPt~-----kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---K 460 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQERPTT-----KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---K 460 (807)
T ss_pred hhHHHHHHhhcCCChhHhcCCcc-----ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---h
Confidence 457778899999875 4555543 499999999999999999999999999999999998888888888775 5
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEE-ecC
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVY-SGS 115 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~-~G~ 115 (525)
|.++++|+-. .+-..|..|+.|++.+.-| .|+
T Consensus 461 TLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 461 TLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred eeEEEecccc-hHHHHHHHHhhhhhhhhhhhcch
Confidence 8999999966 5888999999999877644 444
No 432
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.70 E-value=6.2e-08 Score=102.81 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIG------DEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg------~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.++++.+.|+.++|.|..++.=| -++..-||+||+||++.||.+.++|++-+|||.||++|......+.+.+++
T Consensus 536 ~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 536 SDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred CHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 35678889999999887665322 134467999999999999999999999999999999999888888877766
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeC-CcEE
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSR-GQTV 111 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~-G~~v 111 (525)
.|.|.|-+.|.++ +.+.=|.++-|+. |+.-
T Consensus 616 ---~giT~iSVgHRkS--L~kfHd~~L~~~g~g~w~ 646 (659)
T KOG0060|consen 616 ---MGITFISVGHRKS--LWKFHDYVLRMDGRGSWR 646 (659)
T ss_pred ---cCCeEEEeccHHH--HHhhhhEEEEecCCCceE
Confidence 5889999999976 6776788888876 4443
No 433
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.69 E-value=3.3e-07 Score=83.88 Aligned_cols=127 Identities=12% Similarity=-0.033 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh--HHHHHHHHHHHHH---HHHHHHHHH
Q 037973 296 LQERYIFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG--FFFYFLMMFASFW---AGNSFVTFL 370 (525)
Q Consensus 296 ~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~--f~~f~l~~~l~~~---~~~s~~~~i 370 (525)
-.|+-.+.|-+..-. +++.|+++|++...-..+++..+..++.+. .|.+.+ +....+.+.+... ....++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 789999999999999999988877777754 487644 3322233323233 333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHH
Q 037973 371 SGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVL 425 (525)
Q Consensus 371 s~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~ 425 (525)
+...++.+. ......+..++++.+|.+.|.+++|+|++|+.+++|++|+.+++=
T Consensus 93 a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 444555443 334456667778888999999999999999999999999999874
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.63 E-value=1.8e-07 Score=90.74 Aligned_cols=88 Identities=23% Similarity=0.435 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+.+.+.++..++... .+|||||++++||.-|+ ...++++||||.++||...+..+.++|+++.++
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~ 189 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ 189 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345555665555432 39999999999997664 367899999999999999999999999998754
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
.-+|++||++ .+++.+|+.+-+.
T Consensus 190 -~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 -SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -cccccccccc--ccccccccccccc
Confidence 5588999996 4888999977664
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=98.59 E-value=1.1e-07 Score=98.75 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 30 RGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.| +.+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 457999999999999998 899999999999999999999999888653 24555555543 3799
Q ss_pred eEEEeeCCcEEEecC
Q 037973 101 RMIFLSRGQTVYSGS 115 (525)
Q Consensus 101 ~v~~l~~G~~v~~G~ 115 (525)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999988754433
No 436
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.57 E-value=5e-08 Score=83.07 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=50.1
Q ss_pred HHHHhhhccccccccccccccChHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 037973 458 RLLETLGRTLNMRITTSTCLTTGVDILD-KEAVNQLSKWSCLWITVAWGFFFRFLFYFSLLLGSKNK 523 (525)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~C~~~G~~~L~-~~~~~~~~~w~~~~il~~~~i~f~~l~y~~L~~~~~~~ 523 (525)
+.|+..|+.+|.. .++|++||+ +|++..+++|||+||+++|+++|.++.++++.+.+..+
T Consensus 17 q~C~~~Ga~~G~~------~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 17 QVCAVVGAQPGST------YVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred CccCCCCCCCCcc------EEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4566666555544 378999997 79999999999999999999999999999999887544
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.57 E-value=1e-07 Score=97.85 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
+..+++++.+.|++..++-+.. +||||-||.+||++.+.+.++.++|||.+-||...+..--..|+.+....+=|
T Consensus 192 ~~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Yi 266 (592)
T KOG0063|consen 192 DNKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI 266 (592)
T ss_pred ccHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeE
Confidence 3577889999999988888865 99999999999999999999999999999999999999999999999888889
Q ss_pred EEEeCCCchHHHhhcCeEEEeeC
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
|++.||.+ ...-+.|-+..+..
T Consensus 267 IVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech-HHHhhhcceeEEec
Confidence 99999986 34456777877764
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.57 E-value=1.8e-07 Score=95.68 Aligned_cols=101 Identities=23% Similarity=0.393 Sum_probs=83.4
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEE
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVI 85 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi 85 (525)
..++|++.||.+-. .-....+.||-|||.|..||..+...|.+++.||--+.||..++..+...|.+++++ |.|.+
T Consensus 486 AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 56788888986521 111223569999999999999999999999999999999999999999999999975 89999
Q ss_pred EEeCCCchHHHhh-cCeEEEeeCCcEE
Q 037973 86 MSIHQPSYRILGL-LDRMIFLSRGQTV 111 (525)
Q Consensus 86 ~~~H~~~~~v~~~-~d~v~~l~~G~~v 111 (525)
+++|+|. .+-++ =|+++++.-|.+.
T Consensus 563 vvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 563 VVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EEecCHH-HHhccCCceeEEeeccccc
Confidence 9999986 35555 5888888776553
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.2e-07 Score=98.93 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 30 RGVSGGERRRVSIGIDIIH---------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~---------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
..+|.||+|++.+|..|+. +|+||+||||+++||+..+..+++.|++. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 678999999875
No 440
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.48 E-value=4.4e-07 Score=105.86 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=69.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 28 GHRGVSGGERRRVSIGIDII------HD--PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~------~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
.+..|||||+-.++||.+|+ .+ =+.|||||||..||+.....+++.|..+...+.+|+++||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 55779999998888777653 35 589999999999999999999999999998899999999996 577899
Q ss_pred CeEEEeeCC
Q 037973 100 DRMIFLSRG 108 (525)
Q Consensus 100 d~v~~l~~G 108 (525)
|+++.+...
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 999998763
No 441
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=2.4e-07 Score=89.02 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCCc
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVV-KVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~ 92 (525)
.+|+|++|+ ..+..++++|+++++|||++|+|+.....+. ..++.+.+.|.++|++||+..
T Consensus 91 ~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 91 TFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 478888865 5667788999999999999999998766654 567778878999999999965
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.43 E-value=9e-07 Score=83.19 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEeCCCch-----
Q 037973 28 GHRGVSGGERR------RVSIGIDIIHDPILLFLDEPTSGLD---STSAYMVVKVLQRIAQSGSIVIMSIHQPSY----- 93 (525)
Q Consensus 28 ~~~glSgGerk------Rv~ia~~l~~~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~----- 93 (525)
.+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34568999988 4444445567999999999999999 888888899999998889999999998653
Q ss_pred ---HHHhhcCeEEEeeC
Q 037973 94 ---RILGLLDRMIFLSR 107 (525)
Q Consensus 94 ---~v~~~~d~v~~l~~ 107 (525)
.+..++|.|+.|+.
T Consensus 148 ~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 148 GGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CcCceeEeeeEEEEEEE
Confidence 26778999998874
No 443
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.43 E-value=9.5e-07 Score=84.55 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCCchHHHhh--cCeEEEe
Q 037973 34 GGERRRVSIGIDIIH--DPILLFLDEPTSGLDSTSAYMVV-KVLQRIAQSGSIVIMSIHQPSYRILGL--LDRMIFL 105 (525)
Q Consensus 34 gGerkRv~ia~~l~~--~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~v~~~--~d~v~~l 105 (525)
..|++|+.-....+. +|+++++|||++|+|+.....+. ..++.+.+.|.++|+++|++. .+..+ .++|..+
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 345677777777777 99999999999999999998775 478888878899999999986 34433 3444443
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.36 E-value=3.7e-07 Score=93.79 Aligned_cols=94 Identities=26% Similarity=0.394 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA-QSGSIV 84 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tv 84 (525)
-+.++++-|.+++..|.-+- +|||||.||+++|..|-..+++++.|||.+-||++++..--..+++.- +..+|-
T Consensus 436 F~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkta 510 (592)
T KOG0063|consen 436 FVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA 510 (592)
T ss_pred HHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchh
Confidence 46678888888888888775 499999999999999999999999999999999999999888888864 668899
Q ss_pred EEEeCCCchHHHhhcCeEEEe
Q 037973 85 IMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l 105 (525)
.++.|+.--. .-++|||++.
T Consensus 511 fvVEhdfIma-TYladrvivf 530 (592)
T KOG0063|consen 511 FVVEHDFIMA-TYLADRVIVF 530 (592)
T ss_pred hhhhhHHHHH-HhhcceeEEE
Confidence 9999996432 2368888764
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.33 E-value=1.6e-06 Score=84.03 Aligned_cols=63 Identities=24% Similarity=0.443 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 30 RGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
..+|.|+||.+.+...+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999888876 899999999999999999999999988776778999999985
No 446
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.29 E-value=1.2e-06 Score=84.91 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=63.5
Q ss_pred CCCHHHHHH----HHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcC
Q 037973 31 GVSGGERRR----VSIGIDI--IHDPILLFLDEP---TSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 31 glSgGerkR----v~ia~~l--~~~p~illlDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d 100 (525)
.+|+|+.++ ..++..+ +++|++++|||| |+++|.... ....++.+.+. +.++|++||+. ++.+++|
T Consensus 85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~ 160 (216)
T cd03284 85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEG 160 (216)
T ss_pred hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhh
Confidence 467776553 2355544 579999999999 888887552 23445555555 88999999995 5788999
Q ss_pred eEEEeeCCcEEEecCCCChh
Q 037973 101 RMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 101 ~v~~l~~G~~v~~G~~~~~~ 120 (525)
++..+.+|++...+..+++.
T Consensus 161 ~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 161 KLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred cCCCeEEEEEEEEeeCCeEE
Confidence 98888899998887776653
No 447
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=105.45 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Q 037973 29 HRGVSGGERRRVS----IGID--------IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90 (525)
Q Consensus 29 ~~glSgGerkRv~----ia~~--------l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 90 (525)
..+||||||||+. +|.+ +..+|++++||||++|||+.+...++++++++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 3679999999996 4544 55899999999999999999999999999888 6789999887
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.21 E-value=8.3e-07 Score=101.14 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++.. ....+|+..+ .+
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v-~~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGV-EN 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCe-EE
Confidence 345899999999999988 8999999999999999999888864 677787788999999999642 3334454443 34
Q ss_pred CcEEEe
Q 037973 108 GQTVYS 113 (525)
Q Consensus 108 G~~v~~ 113 (525)
+.+.+.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555553
No 449
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.20 E-value=0.00083 Score=66.21 Aligned_cols=187 Identities=16% Similarity=0.107 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHH-HHHHHHHHHhhhHhhHHHHHHHH
Q 037973 225 VVLSQRSVTNSRRMPELFGIRAGAVIVTGFILATIFWQL-DSSPKGVQERLGFFAF-AMSTTFYTCADALPVFLQERYIF 302 (525)
Q Consensus 225 ~~L~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf~~~-~~~~~~~~~~~g~~f~-~~~~~~~~~~~~i~~f~~er~v~ 302 (525)
+.+.||.++...|.|..+..-.+..++.|+.. ..|... +....+..+..+.+.. ...+.+....-+ ...+
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~l~-------~~~i 73 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLFLIPAIT-------MRSF 73 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 57899999999999998877777777767443 222111 1001111111121111 111111111112 2445
Q ss_pred HHHhcCCCC--------ChHHHHHHHHHHHHhHHHHHHH---HHHHHHHhcc----cCchh-HHHHHHHHHHHHHHHHHH
Q 037973 303 MRETAHNAY--------RRSSYVLSHTLTSLPALVFLSF---AFSAITFWAV----GLDGG-FFFYFLMMFASFWAGNSF 366 (525)
Q Consensus 303 ~rE~~~g~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~----gl~~~-f~~f~l~~~l~~~~~~s~ 366 (525)
.+||++|.. +++.+.++|.++-.-..++..+ ++.....+.. +++.+ ++...+.+++...+..++
T Consensus 74 a~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai 153 (240)
T TIGR03518 74 AEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAI 153 (240)
T ss_pred HHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 788887763 5677899999988755443332 2222222211 12222 333334444555567789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCC--CccchhhhhhCcchHHHH
Q 037973 367 VTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRI--PPYWIWFHYLSLVKYPYE 422 (525)
Q Consensus 367 ~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiSp~~y~~~ 422 (525)
|.++|+++.+...|..++..... .++.|+-. ..++ |.+.+|+.|+||..|-.+
T Consensus 154 g~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 154 GLFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 99999999999888554433322 22222211 2334 778899999999777543
No 450
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=0.00096 Score=66.55 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHHHHH-HHHH--HhhhHhhH
Q 037973 220 AWKEMVVLSQRSVTNSRRMPE-LFGIRAGAVIVTGFILATIFWQLDSSPKGVQERLGFFAFAMST-TFYT--CADALPVF 295 (525)
Q Consensus 220 ~~~Q~~~L~~R~~~~~~R~~~-~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~~~~g~~f~~~~~-~~~~--~~~~i~~f 295 (525)
.++..+.|.+|.++...|+.. -..--++.-.++.++.+.+|-.+-... ..+....+...+.. .++. .......+
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~~~~~l~~G~~~w~f~~~~i~~~~~s~ 93 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLNFLAYLLAGLILWFFFSEAISEGAGSV 93 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 367788899999998776643 233334444444444444443222211 11222222222222 1222 12334445
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037973 296 LQERYIFMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDG-GFFFYFLMMFASFWAGNSFVTFLSGVV 374 (525)
Q Consensus 296 ~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~-~f~~f~l~~~l~~~~~~s~~~~is~~~ 374 (525)
.+...++.|-+ ..+..+.+++++.++--..+..++....+-+.-+..+ +++.....+.+..+.+.+++.++|.++
T Consensus 94 ~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~~g~~l~~a~l~ 169 (263)
T COG1682 94 VANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLGLILASLG 169 (263)
T ss_pred hhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 55555554332 3788999999999987777666666555555444442 244454555555666777888888887
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhhC
Q 037973 375 PHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEFG 430 (525)
Q Consensus 375 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef~ 430 (525)
.-+.--..+...++-+++..+|.+-+.+++|.-++|+.++||+.+-.|.+=..-++
T Consensus 170 v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~ 225 (263)
T COG1682 170 VRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLG 225 (263)
T ss_pred hhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 66533334556677788889999999999999999999999999999877654443
No 451
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.14 E-value=1.9e-06 Score=90.77 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCcccccccccC----CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRNAAKTVIGD----EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~----~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+..+.+|+.+.|+|...+-.|= ++..-||||||||+++||..-++|+.-+|||.||...+.....+.+..|+ .
T Consensus 582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~ 658 (728)
T KOG0064|consen 582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A 658 (728)
T ss_pred HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence 4566788888888776655442 23345999999999999999999999999999999888777776666554 4
Q ss_pred CCEEEEEeCCCchHHHhhcCeEE
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
|.+.|-++|+|+ +.+.-.+++
T Consensus 659 gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 659 GISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred CceEEEeecCcc--HHHHHHHHH
Confidence 889999999997 555444443
No 452
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.13 E-value=4.9e-06 Score=80.52 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcC---CEEEEEeCCCc
Q 037973 31 GVS--GGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMV-VKVLQRIAQSG---SIVIMSIHQPS 92 (525)
Q Consensus 31 glS--gGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i-~~~l~~l~~~g---~tvi~~~H~~~ 92 (525)
++| .-|-||++++++++.+|+++++|||++|+|+.....+ ...++++.++| .++|++||++.
T Consensus 88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 455 5678999999999999999999999999999765555 56888887652 48999999975
No 453
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.05 E-value=1e-05 Score=67.19 Aligned_cols=47 Identities=32% Similarity=0.482 Sum_probs=36.3
Q ss_pred CCCCHHHH-HHHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 30 RGVSGGER-RRVSIGIDI------IH------DPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 30 ~glSgGer-kRv~ia~~l------~~------~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.++||||| ..+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 45999999 445554432 22 3799999999999999999999999874
No 454
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.01 E-value=0.0021 Score=63.98 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHhHHHH---HHHH-HHH-HHHhc-ccCchh---HHHHHHHHHHHH---
Q 037973 301 IFMRETAHNA--------YRRSSYVLSHTLTSLPALVF---LSFA-FSA-ITFWA-VGLDGG---FFFYFLMMFASF--- 360 (525)
Q Consensus 301 v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~---~~~~-f~~-i~Y~~-~gl~~~---f~~f~l~~~l~~--- 360 (525)
.+.+|+++|. +++..++++|.++.+...++ ..++ +.+ .+++. .|.+.+ +....+...+..
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4578887774 68889999999999887432 1111 111 11111 122222 222222222121
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 037973 361 WAGNSFVTFLSGVVPHVMLGYTIVVAILAYF 391 (525)
Q Consensus 361 ~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~ 391 (525)
++..+++.++|+++++...|..+...+....
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 2458899999999998877766655544433
No 455
>PRK13695 putative NTPase; Provisional
Probab=97.98 E-value=1.2e-05 Score=75.09 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
.+||+|+.+..+....+.+|+++++||| ..++..+ ..+.+.+.++.+.|+++|+++|+. .+....|+|..+.+|++
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGRV 153 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcEE
Confidence 4899999999999999999999999995 2233332 445677777767799999999983 46678999999999988
Q ss_pred EEe
Q 037973 111 VYS 113 (525)
Q Consensus 111 v~~ 113 (525)
+.-
T Consensus 154 ~~~ 156 (174)
T PRK13695 154 YEL 156 (174)
T ss_pred EEE
Confidence 665
No 456
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.98 E-value=7.9e-06 Score=93.03 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCCch
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMV-VKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i-~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
...+|+|++++..|...+ .+|+++++|||++|+|+.....+ ..+++.+.+.|.++|++||+...
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 345899999999988876 89999999999999999999988 57888888889999999999753
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.87 E-value=4.5e-05 Score=76.34 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=49.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH-H-----------HhhcCeEEEeeCC
Q 037973 41 SIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR-I-----------LGLLDRMIFLSRG 108 (525)
Q Consensus 41 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-v-----------~~~~d~v~~l~~G 108 (525)
.....+..+|+++++|||++ ...+...++.+ ++|.++|+++|++..+ + ..+|||+++|++|
T Consensus 186 ~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 34445557999999999974 23344455554 4699999999986532 2 2679999999998
Q ss_pred cEEEecCCCCh
Q 037973 109 QTVYSGSPMNL 119 (525)
Q Consensus 109 ~~v~~G~~~~~ 119 (525)
+ ..|++.++
T Consensus 259 ~--~~g~~~~i 267 (270)
T TIGR02858 259 K--GPGTVEAV 267 (270)
T ss_pred C--CCCceeec
Confidence 7 66665443
No 458
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.86 E-value=1.9e-05 Score=76.27 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEPT-----SGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEPt-----sgLD~~~~~~i~~~l~~l~~ 79 (525)
|-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 34999999999999999999999999 99999999999999999875
No 459
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.82 E-value=0.015 Score=58.13 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhh
Q 037973 358 ASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEF 429 (525)
Q Consensus 358 l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef 429 (525)
+..+.+.++|.++|++..-..-...+.+.++.+++..+|.+-+.+.+|.+++|+.+.||+.+..|+.=..-+
T Consensus 157 l~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~ 228 (264)
T PRK15176 157 IAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 344455667777766653322222445667777888899999999999999999999999999987654444
No 460
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.72 E-value=5.6e-05 Score=87.11 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=60.9
Q ss_pred HhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHH---------hhcCeEEEeeCCcEEEecC
Q 037973 46 IIHDPILLFLDEPTSGL-DSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRIL---------GLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 46 l~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~---------~~~d~v~~l~~G~~v~~G~ 115 (525)
+..+|+++++|||+.+| |+..+..+.+.++++.+.|.+++++||++.. +. +.||++++|.+|++...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 7999999999999999889999999999874 43 6899999999998876653
No 461
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.63 E-value=1.2e-05 Score=81.80 Aligned_cols=127 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc---Cchh-HHHHHHHHHHHHHHHHHHHH
Q 037973 295 FLQERYIFMRET--AHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVG---LDGG-FFFYFLMMFASFWAGNSFVT 368 (525)
Q Consensus 295 f~~er~v~~rE~--~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~g---l~~~-f~~f~l~~~l~~~~~~s~~~ 368 (525)
..+||.-=.+|+ ..| -+...|++++.+..+...++..+++.++ +.| ++.+ +...++.+++..++..+++.
T Consensus 182 i~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 257 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFGNFLLLLLLLLLFSLAFISFGF 257 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 345554433444 555 4888999999999999998888777664 334 5443 44444666666777888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHH
Q 037973 369 FLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVL 425 (525)
Q Consensus 369 ~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~ 425 (525)
+++.++++...|..++.++..+.+.++|.+.+.+++|.+++|+.++.|..|..+++.
T Consensus 258 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~ 314 (344)
T PF12698_consen 258 LISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLR 314 (344)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888777777766566667777779999999999999999999887665
No 462
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.49 E-value=0.00028 Score=69.15 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCEEEEEeCCCch------HHHh
Q 037973 32 VSGGERRRVSIGIDII----HDPILLFLDEPTSGL----DSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY------RILG 97 (525)
Q Consensus 32 lSgGerkRv~ia~~l~----~~p~illlDEPtsgL----D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~------~v~~ 97 (525)
+|+++.++-.+...+- .+|+++++||||+++ |+....++.+.++.++++|.|+++++|+... .+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 5777655544433322 379999999999999 8888889999999998888887776664321 1234
Q ss_pred hcCeEEEee
Q 037973 98 LLDRMIFLS 106 (525)
Q Consensus 98 ~~d~v~~l~ 106 (525)
++|-|+.|.
T Consensus 176 ~~DgvI~L~ 184 (230)
T PRK08533 176 AATMLIRLE 184 (230)
T ss_pred eeeEEEEEE
Confidence 557777666
No 463
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=0.00022 Score=69.26 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEeCCCc
Q 037973 35 GERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKV-LQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 35 GerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tvi~~~H~~~ 92 (525)
.|-++++-....+++|+++++|||.+|+|+.....+... ++.+.+. +.++|++||++.
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 567888777777899999999999999999999888888 7788775 889999999975
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.42 E-value=0.00029 Score=69.26 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGI----------------DIIHDPILLFLDEPTS------ 60 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~----------------~l~~~p~illlDEPts------ 60 (525)
.++|+.++...+++.+..+... ..+|+.+++.++. ....+|+++++| |++
T Consensus 56 i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 56 IHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred HHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 3567778888777665544433 2245555554433 335799999999 765
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCc
Q 037973 61 GLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 61 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
.+|+.....+++.|++++++ |.+|+++.|...
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999875 888999888864
No 465
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.38 E-value=8.3e-05 Score=73.59 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=63.3
Q ss_pred CCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 29 HRGVSGGE--------RRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYM-VVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 29 ~~glSgGe--------rkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
.+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~ 200 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIF 200 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCC
Confidence 34579999 9999999999899999999 999999655543 54 5555546789999999976 46789
Q ss_pred CeEEEeeCCcE
Q 037973 100 DRMIFLSRGQT 110 (525)
Q Consensus 100 d~v~~l~~G~~ 110 (525)
|.|.+|+.|..
T Consensus 201 paI~vl~s~sr 211 (249)
T cd01128 201 PAIDILKSGTR 211 (249)
T ss_pred CeEEEcCCCCc
Confidence 99999999987
No 466
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.35 E-value=0.00091 Score=65.50 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCEEEEEeCCCch------HHHhhcC
Q 037973 32 VSGGERRRVSIGIDIIH--DPILLFLDEPTSG---LDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY------RILGLLD 100 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~--~p~illlDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~------~v~~~~d 100 (525)
.|.++++.+.....++. +|+++++||||+. .|.....++++.++.++++|.|+++++|++.. .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 46788899999998887 9999999999964 55555566666677777789999999998753 1455677
Q ss_pred eEEEeeC
Q 037973 101 RMIFLSR 107 (525)
Q Consensus 101 ~v~~l~~ 107 (525)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777764
No 467
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.27 E-value=0.00069 Score=65.92 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCEEEEEeCCCc
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMV-VKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i-~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
..|-+|++-...-+++|+++++|||.+|.|+.....+ ...++.+.+. +.++|++||++.
T Consensus 95 ~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 95 MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 3577888887788889999999999999998777664 5677777776 889999999975
No 468
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=97.25 E-value=0.02 Score=55.41 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Q 037973 224 MVVLSQRSVTNSRRMPELFGIRAGAVIVTGFILATIFWQLDSSPKGVQ-ERLGFFAFAMSTTFYTCADALPVFLQERYIF 302 (525)
Q Consensus 224 ~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~~~-~~~g~~f~~~~~~~~~~~~~i~~f~~er~v~ 302 (525)
|+.+.||.++.-+|++.....-+...+..-.++.. -++.+.+... .-.|++.++..+...... + ..|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~---al~~~~~~l~~~~~gllWi~~lfa~~l~~--------~-r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSF---ALGPDPDLLARVAPGLLWIALLFASLLGL--------N-RSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHh---hcCCchhHHHHHhHHHHHHHHHHHHHHHh--------h-HhH
Confidence 46799999999999988665554444443333333 3444433222 223455554444332222 2 237
Q ss_pred HHHhcCCC--------CChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037973 303 MRETAHNA--------YRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGV 373 (525)
Q Consensus 303 ~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~ 373 (525)
.+|.++|. .++..++++|.++..-+..+..++...+...+-|++.. ...+.+.+.+....-...|.+.+++
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~~~~~~~~~l~lgt~gl~~igtl~aal 148 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPISSWPLLLLSLLLGTLGLAAIGTLLAAL 148 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78888875 24567999999998877776666666666666677765 4555556666666666677777776
Q ss_pred cCCHH
Q 037973 374 VPHVM 378 (525)
Q Consensus 374 ~~~~~ 378 (525)
+-+..
T Consensus 149 ~~~~r 153 (215)
T PF03379_consen 149 AAGAR 153 (215)
T ss_pred HHhcc
Confidence 54443
No 469
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.21 E-value=0.00093 Score=62.29 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
....|.||-=- .|-.--.++.-+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 127 Lh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 34579999643 3333345678999999999999999999999999999999988999999984
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.20 E-value=0.0011 Score=59.97 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTS----------GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR 94 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 94 (525)
.+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.|+++++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 35566677788888889999999999994 4555555666666555555688999999998643
No 471
>PF13175 AAA_15: AAA ATPase domain
Probab=97.03 E-value=0.0015 Score=69.09 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHHhh------C-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCc
Q 037973 30 RGVSGGERRRVSIGIDIIH------D-PI---LLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~------~-p~---illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~ 92 (525)
...|.|+++.+.++..+.. + +. ++++|||=+.|.|..+..+++.|++++. .+..||+|||.|-
T Consensus 340 ~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 340 SQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred hhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 4589999999888776531 2 22 9999999999999999999999999987 5678999999984
No 472
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.99 E-value=0.0011 Score=76.85 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHh--hcCeEEEeeCCcEE
Q 037973 42 IGIDIIHDPILLFLDEPTSGL-DSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILG--LLDRMIFLSRGQTV 111 (525)
Q Consensus 42 ia~~l~~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~--~~d~v~~l~~G~~v 111 (525)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 566778899999999999999 7999999999999999889999999999874 543 33433333444444
No 473
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0057 Score=66.30 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHHhh--C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 29 HRGVSGGERRRVSIGIDIIH--D--PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~--~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
.+--||||--|+++|.-.+. . .+.|++||-=+|+--..+..|-+.|++|++ ..-|+|+||.|- |...+|+=+.
T Consensus 429 ~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlPQ--VAa~ad~H~~ 505 (557)
T COG0497 429 AKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLPQ--VAAMADTHFL 505 (557)
T ss_pred HhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHHH--HHhhhcceEE
Confidence 35679999999999985543 2 458999999999999999999999999986 356999999984 8888998888
Q ss_pred eeC
Q 037973 105 LSR 107 (525)
Q Consensus 105 l~~ 107 (525)
+++
T Consensus 506 V~K 508 (557)
T COG0497 506 VEK 508 (557)
T ss_pred EEE
Confidence 876
No 474
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.50 E-value=0.009 Score=60.02 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 30 RGVSGGERRRVSIGIDIIH--DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~--~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
+.||-|+-|-+.++.+|.+ .|.++++|||-++|.|..-..+..+++.-++.+ -||++||.++
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 5799999999999999987 689999999999999999999999999987765 6999999976
No 475
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.49 E-value=0.0043 Score=70.04 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCC
Q 037973 29 HRGVSGGERRRVSIGIDIIH------DPILLFLDEPTSGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~------~p~illlDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~ 91 (525)
+..||||||+-+++|..++- +.++ ++|||++.||+..+..+++ .+.++ ..-||+.+|+.
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~ 614 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDE 614 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechH
Confidence 35689999999877764432 3445 5699999999999999885 66554 34577777874
No 476
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=96.48 E-value=0.61 Score=46.47 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHc-CCC--C--ChhhHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Q 037973 223 EMVVLSQRSVTNSRRMPELFGIRAGAVIVTGFILATIFW-QLD--S--SPKGVQERLGFFAFAMSTTFYTCADALPVFLQ 297 (525)
Q Consensus 223 Q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf~-~~~--~--~~~~~~~~~g~~f~~~~~~~~~~~~~i~~f~~ 297 (525)
++..+.++.++...|+|...........+.++.....+. ... . ....-+.. ....+......+.. +-....
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~l 78 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLP---LLAILL 78 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHH---HHHHHH
Confidence 578899999999999998777776665666666666662 111 1 11111111 11111111111111 001112
Q ss_pred HHHHHHHHhcCCC--------CChHHHHHHHHHHHHhHHHHHHHHHH---HHHHhcccCchh------HHHHHHHHHHHH
Q 037973 298 ERYIFMRETAHNA--------YRRSSYVLSHTLTSLPALVFLSFAFS---AITFWAVGLDGG------FFFYFLMMFASF 360 (525)
Q Consensus 298 er~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~---~i~Y~~~gl~~~------f~~f~l~~~l~~ 360 (525)
--.++.+|+.+|. .++..-+++|.++-+-..++..++.. ...+...|..+. +..+.....+..
T Consensus 79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (278)
T COG1277 79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYG 158 (278)
T ss_pred ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 2335678888875 56777888999888776655555544 223444454432 345555555666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccC-----CCCCCccchhhhhhCcchHHHHHHH
Q 037973 361 WAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFIT-----RDRIPPYWIWFHYLSLVKYPYEAVL 425 (525)
Q Consensus 361 ~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~-----~~~ip~~~~W~~yiSp~~y~~~al~ 425 (525)
.+-.+++.+++....+...+..+...+...+.+..+.... .....+....+.+.+|..+..+...
T Consensus 159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (278)
T COG1277 159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAF 228 (278)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhh
Confidence 6667788999999998777665555444333332222211 1111113456667777776665544
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.31 E-value=0.00056 Score=74.44 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH-------H-HhhcC
Q 037973 31 GVSGGERRRVSIG--IDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR-------I-LGLLD 100 (525)
Q Consensus 31 glSgGerkRv~ia--~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-------v-~~~~d 100 (525)
.+|+|++||+.|+ .++..+|+.. ...+.++.++++.+++.|.|+|+++|++... + ..++|
T Consensus 115 ~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laD 184 (484)
T TIGR02655 115 AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSD 184 (484)
T ss_pred HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeee
Confidence 4788888888888 5555555333 4677888999999988999999999986521 2 55789
Q ss_pred eEEEee
Q 037973 101 RMIFLS 106 (525)
Q Consensus 101 ~v~~l~ 106 (525)
.|+.|+
T Consensus 185 gVI~L~ 190 (484)
T TIGR02655 185 NVVILR 190 (484)
T ss_pred eEEEEE
Confidence 999887
No 478
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.27 E-value=0.0089 Score=46.14 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=38.3
Q ss_pred cChHHHHhhcCCCCCC--chHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037973 478 TTGVDILDKEAVNQLS--KWSCLWITVAWGFFFRFLFYFSLLLGS 520 (525)
Q Consensus 478 ~~G~~~L~~~~~~~~~--~w~~~~il~~~~i~f~~l~y~~L~~~~ 520 (525)
.-|+++|++.|+..+. .|..+|+|+|+.++|.++..++|.+.+
T Consensus 11 tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~ 55 (65)
T PF08370_consen 11 TLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLN 55 (65)
T ss_pred cHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4699999999997654 567999999999999999999999997
No 479
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.011 Score=63.14 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCCHHHHHHHH-----HHHHHh-hCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHH--cCC
Q 037973 31 GVSGGERRRVS-----IGIDII-HDPI-LLFLD-----------------EP--TSGLDSTSAYMVVKVLQRIAQ--SGS 82 (525)
Q Consensus 31 glSgGerkRv~-----ia~~l~-~~p~-illlD-----------------EP--tsgLD~~~~~~i~~~l~~l~~--~g~ 82 (525)
.-|-++|-|.. +|.-+. ..-+ ++++| || |+|+|+.....+.++++++.+ +|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 35678887743 333332 2334 46788 75 679999999999999999974 575
Q ss_pred -----EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 83 -----IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 83 -----tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||++.+|++++ .++|++..+.+|+++..++..+
T Consensus 303 IT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 303 ITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred eeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 89999999873 6899999999999999998644
No 480
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.0043 Score=69.70 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhh---C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEE
Q 037973 30 RGVSGGERRRVSIGIDIIH---D-PILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~---~-p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
.+||||||--|++|..++. + ++..++||.-++||+..+..|-.+|++|++. .-.|+||-.| ++.+.+|+..
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfy 1170 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFY 1170 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhh
Confidence 4699999999999987754 4 4889999999999999999999999999986 4588899887 5788888765
No 481
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.04 E-value=0.013 Score=67.91 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=42.8
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 46 IIHDPILLFLDEPTSGLD-STSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 46 l~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
+-.+|+++++|||..+|| +..+..+.+.++.+.+.|.++++++|+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999986
No 482
>COG1511 Predicted membrane protein [Function unknown]
Probab=95.98 E-value=0.12 Score=59.61 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=85.3
Q ss_pred hcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 037973 306 TAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG--FFFYFLMMFASFWAGNSFVTFLSGVVPHVMLGYTI 383 (525)
Q Consensus 306 ~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~--f~~f~l~~~l~~~~~~s~~~~is~~~~~~~~a~~~ 383 (525)
...+.|...-|++++.++-+-....+..+-...-+++.|+... +.+++..++..... ..+.+++.+++- ..+-.+
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~~~~~~~~~~i~~s~~f-~~ii~~lv~~~g--~~g~~i 686 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVKSPLLLVLFAIFSSVAF-MIIIYLLVSLFG--NPGKFI 686 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccCchhHHHHHHHHHHHHH-HHHHHHHHHHhC--cchHHH
Confidence 6777788889999999999999999988877777788787754 44444444443333 334344444444 345566
Q ss_pred HHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHH
Q 037973 384 VVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYE 422 (525)
Q Consensus 384 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~ 422 (525)
+.+++++++..+|-.-|....|.++++++..-|+.|++.
T Consensus 687 ~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty~v~ 725 (780)
T COG1511 687 AIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVN 725 (780)
T ss_pred HHHHHHHHHhccccccchhccHHHHHHHHHhccHHHHHH
Confidence 677788899999999999999999999999999999953
No 483
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.94 E-value=0.01 Score=71.47 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEE
Q 037973 30 RGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
..||||||=-++||..++. -.++.+|||-=++||..++..+.++|++.+ .+.=.|++||++. .+..+|+++
T Consensus 1065 ~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~--~m~~ad~l~ 1139 (1163)
T COG1196 1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG--TMEAADRLV 1139 (1163)
T ss_pred hhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH--HHHHHHHHe
Confidence 4599999999999986654 458999999999999999999999999998 4455899999974 677788754
No 484
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.93 E-value=0.0051 Score=62.96 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=55.8
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 40 VSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 40 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
-.+..+|-.+|+++++|||.+ .+..+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+.
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 356667889999999999996 3456777777643445799999986 5667999999999999888877655
No 485
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=95.89 E-value=0.34 Score=51.18 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCch-------hHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHH
Q 037973 312 RRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDG-------GFFFYFLMMFASFWAGNSF-VTFLSGVVPHVMLGYTI 383 (525)
Q Consensus 312 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~-------~f~~f~l~~~l~~~~~~s~-~~~is~~~~~~~~a~~~ 383 (525)
++..|++-+.++.....++.+++|+.+. +..+.+. +|+.+++..++...+.-.. =.+++.+ +..-++.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i-~~~~~~~-- 315 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISII-GPPFMPF-- 315 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHH--
Confidence 7888999999999999999999998887 6666553 2777776665554331111 1222222 2222222
Q ss_pred HHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHHHHHHHHhh
Q 037973 384 VVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPYEAVLQSEF 429 (525)
Q Consensus 384 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~al~~nef 429 (525)
..++.++.-+-+ -+.|.+-.|.++||.|=. |++.+++++-+.=|
T Consensus 316 ~ll~wvi~nv~~-~~~P~el~p~fyr~gya~-P~~n~~~~~r~I~f 359 (382)
T PF12051_consen 316 WLLFWVILNVSS-TFYPLELSPGFYRYGYAM-PMHNIYEGLRVIFF 359 (382)
T ss_pred HHHHHHHHhccc-ccCChhhCccHHHHhhhh-hHHHHHHHHHHhee
Confidence 112222333445 455899999999999988 99999999988744
No 486
>PF13166 AAA_13: AAA domain
Probab=95.82 E-value=0.029 Score=64.06 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCccccccc--------c----cCCCCCCCCHHHHHHHHHHHH--Hhh-------CCCEEEEeCCCCCCC
Q 037973 5 IRVQALIDQLGLRNAAKTV--------I----GDEGHRGVSGGERRRVSIGID--IIH-------DPILLFLDEPTSGLD 63 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~--------v----g~~~~~glSgGerkRv~ia~~--l~~-------~p~illlDEPtsgLD 63 (525)
.++.+.|+.+|..+..=.. + |......||-|||+=+++|-= .+. +..++++|.|.|.||
T Consensus 462 ~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD 541 (712)
T PF13166_consen 462 DRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLD 541 (712)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCC
Confidence 3566677777755421000 0 112357899999999999863 333 578999999999999
Q ss_pred HHHHHHHHHHHHHHH--HcCCEEEEEeCCCc
Q 037973 64 STSAYMVVKVLQRIA--QSGSIVIMSIHQPS 92 (525)
Q Consensus 64 ~~~~~~i~~~l~~l~--~~g~tvi~~~H~~~ 92 (525)
......+.+.|+++. ...+-||+.||+..
T Consensus 542 ~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~ 572 (712)
T PF13166_consen 542 HNRRFGVASRLKEEIKNSKFRQVIILTHNLY 572 (712)
T ss_pred HHHHHHHHHHHHHHhhcCCcceEEEEeCcHH
Confidence 999999999999997 45567999999964
No 487
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=95.73 E-value=0.63 Score=44.84 Aligned_cols=136 Identities=12% Similarity=-0.005 Sum_probs=81.4
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHH-cCCCCChhhHHHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Q 037973 228 SQRSVTNSRRMPELFGIRAGAVIVTGFILATIF-WQLDSSPKGVQER-LGFFAFAMSTTFYTCADALPVFLQERYIFMRE 305 (525)
Q Consensus 228 ~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~lf-~~~~~~~~~~~~~-~g~~f~~~~~~~~~~~~~i~~f~~er~v~~rE 305 (525)
.+|.++..+|++.....-++-.+ ++-++| +-++.+++-.++. -|++.++..+...... ...|.+|
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l----~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l---------~rlF~~d 68 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFL----IVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSL---------DRLFRDD 68 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHH----HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHH
Confidence 58899999999875544433333 333333 3455554333332 3455555554433322 2357888
Q ss_pred hcCCC--------CChHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccCchh-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 037973 306 TAHNA--------YRRSSYVLSHTLTSLPALVFLSFAFSAITFWAVGLDGG-FFFYFLMMFASFWAGNSFVTFLSGVVPH 376 (525)
Q Consensus 306 ~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~~~~ 376 (525)
+++|. .+....+++|.++..-+..+.-.+.....-.+-|++.. ...+.+.+.+-...-..+|.+.++++-+
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~~~~~l~l~LllGt~~Ls~igtl~aALt~g 148 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVPAWGALALTLLLGTPALSFLGAIGAALTVG 148 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88884 35677899999987766555555544444445677654 4555566666666666677777777644
No 488
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.36 E-value=0.026 Score=66.22 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=50.8
Q ss_pred CCHHHH------HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEEeCCC
Q 037973 32 VSGGER------RRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-----GSIVIMSIHQP 91 (525)
Q Consensus 32 lSgGer------kRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-----g~tvi~~~H~~ 91 (525)
-|.||| =|+++|..+..+..+|=|||||++||-.....+...|..+-+. +.-.|++|||-
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE 1254 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDE 1254 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHH
Confidence 499998 6888899999999999999999999999999888888776431 34578889983
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.08 E-value=0.03 Score=53.41 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 41 SIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 41 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
.+..+|..+|+++++|||. |..+...++ +.+..|+.++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5678888999999999996 655443333 34567999999999986 346788887664
No 490
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.65 E-value=0.016 Score=54.65 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCch-HHHhhcCeEEEeeCC
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY-RILGLLDRMIFLSRG 108 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~-~v~~~~d~v~~l~~G 108 (525)
-|+-.|..+|..+..+|+.+..+| +.+||....++.+.+++...+|.+|++.+|.... .....||+++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 478899999999999999988777 8999999999999999887667899999998742 366789999887664
No 491
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.62 E-value=0.055 Score=62.73 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEeCCCch
Q 037973 45 DIIHDPILLFLDEPTSGLD-STSAYMVVKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 45 ~l~~~p~illlDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
.+..+|.++++|||...|| +..+..+.+.++++.+.|..++++||+|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999998889999999999864
No 492
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.56 E-value=0.028 Score=59.81 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=58.9
Q ss_pred CCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 29 HRGVSGGERRRVSIGIDII-------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~-------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
...-|.|+|+|+..+...+ .++-++++|+||++.|+. .++-..+.+.-..|.+..+.+|.+ .+.+ |
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~E---R 291 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLE---R 291 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHH---H
Confidence 3557999999999888777 789999999999999996 555556666654588888888853 3444 4
Q ss_pred EEEeeCCcEEEecC
Q 037973 102 MIFLSRGQTVYSGS 115 (525)
Q Consensus 102 v~~l~~G~~v~~G~ 115 (525)
.-...+|.+...+.
T Consensus 292 ag~~~~GSiT~~~t 305 (432)
T PRK06793 292 SGKTQKGSITGIYT 305 (432)
T ss_pred hccCCCcceEEEEE
Confidence 44456787765543
No 493
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.27 E-value=2.2 Score=41.66 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCccchhhhhhCcchHHH
Q 037973 379 LGYTIVVAILAYFLLFSGFFITRDRIPPYWIWFHYLSLVKYPY 421 (525)
Q Consensus 379 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~ 421 (525)
-|..+.-..-++..+.||.++|.+-.|+|.+=+--..|+-|..
T Consensus 176 ~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~~il~ftPFpy~~ 218 (268)
T COG4587 176 RASSLGKFWWLLYAFLSGSLAPLAFFPDWVRAILAFTPFPYLL 218 (268)
T ss_pred chhhHHHHHHHHHHHhccccchHHhChHHHHHHHHhCCchhhh
Confidence 3456666666777899999999999999887665556666654
No 494
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=94.16 E-value=0.16 Score=59.07 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=50.2
Q ss_pred CCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcCe
Q 037973 28 GHRGVSGGERRRVSIGIDI--IHDPILLFLDEP---TSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l--~~~p~illlDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~ 101 (525)
..+|.|-=+.....++..| +++++++++||| |+.+|... .....++.+.+. +.+++++||.. ++.+++++
T Consensus 663 i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 663 LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 3466776666666666655 459999999999 88888444 344556666655 57899999994 57777775
No 495
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.85 E-value=0.1 Score=56.16 Aligned_cols=71 Identities=13% Similarity=0.232 Sum_probs=54.3
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEE-EeeCCcEEEecCCCC
Q 037973 48 HDPILLFLDEPTSGLDST-SAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMI-FLSRGQTVYSGSPMN 118 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~-~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~-~l~~G~~v~~G~~~~ 118 (525)
.+|++|++|||...+|.. ++.++.+.+..+.+.|+.+|++++++..++..+.|++. -+..|-++...+|+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 379999999999988764 56788899999888888888877444446666667655 467788888888864
No 496
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.26 E-value=0.22 Score=53.46 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHhh---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 31 GVSGGERRRVSIGIDIIH---DP-----ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~---~p-----~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
.||-||+.-++++--|+. +| +++++|.|.+.+|+.-..+++..++....+++-||+-+|+ ..-+.+++|
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~~~ 605 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDITL 605 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHHHh
Confidence 499999999988766543 54 5789999999999999999999999999999999999999 433444444
No 497
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.80 E-value=0.26 Score=45.33 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=53.4
Q ss_pred HHHHHHHHhh--CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 39 RVSIGIDIIH--DPILLFLDEPTSG--LDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 39 Rv~ia~~l~~--~p~illlDEPtsg--LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
-...|.+.+. +.++++|||-... ++.....+++++|+. ..++..+|+|.++++.++.+.+|-|.-|..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 3455566664 5799999998875 555677888888876 334678999999999999999999988865
No 498
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=92.66 E-value=0.22 Score=51.70 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 30 RGVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
.-.|-||+|-+.++.-|+ ..++||+|||-+|-||..-+..+++. .. ...++.|-+|+. + .+.+..+
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~--~~~Q~fvT~t~~-~-~~~~~~~ 348 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE--LGVQVFVTTTDL-E-DIDDNLD 348 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc--cCCeEEEEccCH-H-Hhhhhhh
Confidence 347999999999887554 36899999999999999999998888 32 233455555544 3 3443444
Q ss_pred ---eEEEeeCCcE
Q 037973 101 ---RMIFLSRGQT 110 (525)
Q Consensus 101 ---~v~~l~~G~~ 110 (525)
++...++|++
T Consensus 349 ~~~~~f~V~~g~i 361 (363)
T COG1195 349 ENAQMFHVEDGKI 361 (363)
T ss_pred ccceEEEEeccee
Confidence 6777778876
No 499
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.57 E-value=0.14 Score=52.90 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=34.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 53 LFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 53 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
+++|||+.+||+..+..+++.|.+.. ++.++|+++|++.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~ 154 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAAD 154 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChH
Confidence 55789999999999999999999985 5688999999986
No 500
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=92.48 E-value=12 Score=36.90 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHh----cc---cCchh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037973 302 FMRETAHNAYRRSSYVLSHTLTSLPALVFLSFAFSAITFW----AV---GLDGG-FFFYFLMMFASFWAGNSFVTFLSGV 373 (525)
Q Consensus 302 ~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~----~~---gl~~~-f~~f~l~~~l~~~~~~s~~~~is~~ 373 (525)
-+|.-...-.+...+++||.+.-+-+.++..++...+... .. +++.. ++...+.+++..+....+..+++..
T Consensus 76 ~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~ 155 (248)
T TIGR03733 76 NFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFA 155 (248)
T ss_pred hHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444446778899999998777766655443222221 11 22222 4444455666666667778888887
Q ss_pred cCC
Q 037973 374 VPH 376 (525)
Q Consensus 374 ~~~ 376 (525)
..+
T Consensus 156 ~g~ 158 (248)
T TIGR03733 156 FGM 158 (248)
T ss_pred hCC
Confidence 775
Done!