Query 037973
Match_columns 525
No_of_seqs 254 out of 2975
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 2.5E-25 8.6E-30 221.7 13.1 111 3-119 120-231 (275)
2 3tui_C Methionine import ATP-b 99.9 3.5E-25 1.2E-29 227.7 12.2 111 3-119 140-251 (366)
3 1g6h_A High-affinity branched- 99.9 1.1E-24 3.7E-29 215.3 13.7 109 4-118 131-239 (257)
4 2olj_A Amino acid ABC transpor 99.9 1.1E-24 3.7E-29 215.8 13.2 110 4-119 137-246 (263)
5 1b0u_A Histidine permease; ABC 99.9 9.5E-25 3.2E-29 216.3 12.5 110 4-119 130-240 (262)
6 4g1u_C Hemin import ATP-bindin 99.9 1.5E-24 5E-29 215.4 12.4 111 3-119 118-235 (266)
7 2pcj_A ABC transporter, lipopr 99.9 2.7E-24 9.1E-29 208.3 13.5 106 4-116 118-223 (224)
8 3tif_A Uncharacterized ABC tra 99.9 3.2E-24 1.1E-28 209.2 14.1 110 3-119 121-232 (235)
9 2onk_A Molybdate/tungstate ABC 99.9 1.5E-24 5E-29 212.1 11.0 110 4-119 104-214 (240)
10 1vpl_A ABC transporter, ATP-bi 99.9 2.5E-24 8.5E-29 212.4 12.7 110 4-119 124-233 (256)
11 3fvq_A Fe(3+) IONS import ATP- 99.9 2.9E-24 9.9E-29 220.7 12.8 111 3-119 115-226 (359)
12 3rlf_A Maltose/maltodextrin im 99.9 3.3E-24 1.1E-28 221.8 13.0 111 3-119 110-221 (381)
13 1ji0_A ABC transporter; ATP bi 99.9 3.1E-24 1.1E-28 209.9 10.9 110 4-119 116-226 (240)
14 2yz2_A Putative ABC transporte 99.9 5.5E-24 1.9E-28 211.3 12.2 110 4-119 114-225 (266)
15 1z47_A CYSA, putative ABC-tran 99.9 5.9E-24 2E-28 218.5 12.8 111 3-119 122-233 (355)
16 2ihy_A ABC transporter, ATP-bi 99.9 4.3E-24 1.5E-28 213.3 10.6 110 4-119 139-250 (279)
17 2yyz_A Sugar ABC transporter, 99.9 8.1E-24 2.8E-28 217.9 12.8 110 4-119 111-221 (359)
18 1oxx_K GLCV, glucose, ABC tran 99.9 6.8E-24 2.3E-28 218.4 11.9 111 3-119 117-228 (353)
19 2nq2_C Hypothetical ABC transp 99.9 9.2E-24 3.1E-28 208.1 12.4 109 4-119 106-215 (253)
20 2it1_A 362AA long hypothetical 99.9 6.9E-24 2.4E-28 218.6 11.6 111 3-119 110-221 (362)
21 1g29_1 MALK, maltose transport 99.9 1.1E-23 3.8E-28 218.1 12.9 111 3-119 116-227 (372)
22 2zu0_C Probable ATP-dependent 99.9 1.9E-23 6.5E-28 207.5 13.0 112 4-120 140-253 (267)
23 1v43_A Sugar-binding transport 99.9 1.1E-23 3.8E-28 217.8 11.5 111 3-119 118-229 (372)
24 2qi9_C Vitamin B12 import ATP- 99.9 1.5E-23 5E-28 206.1 11.6 110 4-119 104-220 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 2.1E-23 7.2E-28 205.3 12.3 109 4-117 119-229 (250)
26 3d31_A Sulfate/molybdate ABC t 99.9 1.6E-23 5.5E-28 214.9 11.7 109 5-119 106-215 (348)
27 2pjz_A Hypothetical protein ST 99.9 1.2E-22 4.1E-27 201.1 11.1 107 4-119 105-213 (263)
28 2ff7_A Alpha-hemolysin translo 99.9 2.1E-22 7.2E-27 197.7 12.2 113 4-119 112-230 (247)
29 2ixe_A Antigen peptide transpo 99.9 1.8E-22 6.2E-27 200.8 10.0 106 7-119 135-243 (271)
30 1mv5_A LMRA, multidrug resista 99.9 2.6E-22 8.8E-27 196.7 9.4 113 4-119 106-224 (243)
31 3nh6_A ATP-binding cassette SU 99.9 1.1E-21 3.6E-26 198.1 12.5 112 4-119 157-275 (306)
32 2ghi_A Transport protein; mult 99.9 1.3E-21 4.5E-26 193.5 12.1 112 4-119 122-240 (260)
33 3gd7_A Fusion complex of cysti 99.8 1.7E-21 6E-26 202.6 8.4 114 3-119 121-240 (390)
34 2yl4_A ATP-binding cassette SU 99.8 1.5E-20 5.3E-25 207.0 15.0 114 3-120 449-569 (595)
35 3j16_B RLI1P; ribosome recycli 99.8 1.1E-20 3.6E-25 207.4 11.9 111 4-120 445-558 (608)
36 1sgw_A Putative ABC transporte 99.8 4E-21 1.4E-25 184.4 6.5 96 4-106 112-207 (214)
37 3b60_A Lipid A export ATP-bind 99.8 2.5E-20 8.5E-25 204.8 12.8 112 4-119 447-565 (582)
38 2pze_A Cystic fibrosis transme 99.8 1.2E-20 3.9E-25 183.3 8.8 110 6-119 99-216 (229)
39 2cbz_A Multidrug resistance-as 99.8 1.3E-20 4.6E-25 183.8 9.2 89 28-119 124-215 (237)
40 3bk7_A ABC transporter ATP-bin 99.8 4.8E-20 1.7E-24 202.4 13.2 112 4-121 449-563 (607)
41 1yqt_A RNAse L inhibitor; ATP- 99.8 3.3E-20 1.1E-24 201.5 11.7 112 4-121 379-493 (538)
42 3b5x_A Lipid A export ATP-bind 99.8 3.5E-20 1.2E-24 203.6 11.7 112 4-119 447-565 (582)
43 3qf4_A ABC transporter, ATP-bi 99.8 5.3E-20 1.8E-24 202.2 13.1 112 5-120 447-565 (587)
44 4a82_A Cystic fibrosis transme 99.8 5.9E-20 2E-24 201.6 11.9 112 4-119 444-562 (578)
45 3ozx_A RNAse L inhibitor; ATP 99.8 5.9E-20 2E-24 199.2 11.6 111 4-120 363-476 (538)
46 3bk7_A ABC transporter ATP-bin 99.8 8.8E-20 3E-24 200.4 11.2 100 5-110 207-306 (607)
47 3qf4_B Uncharacterized ABC tra 99.8 7.4E-20 2.5E-24 201.5 10.5 111 5-119 459-576 (598)
48 3ux8_A Excinuclease ABC, A sub 99.8 1.5E-19 5.1E-24 201.8 12.9 108 5-119 521-638 (670)
49 3j16_B RLI1P; ribosome recycli 99.8 1.5E-19 5.2E-24 198.2 12.0 104 4-113 199-302 (608)
50 1yqt_A RNAse L inhibitor; ATP- 99.8 9.1E-20 3.1E-24 198.0 10.1 99 5-109 137-235 (538)
51 2bbs_A Cystic fibrosis transme 99.8 9.9E-20 3.4E-24 182.6 8.8 110 6-119 128-245 (290)
52 3ux8_A Excinuclease ABC, A sub 99.8 2E-19 6.7E-24 200.8 11.4 104 9-119 184-296 (670)
53 3ozx_A RNAse L inhibitor; ATP 99.8 2.3E-19 7.8E-24 194.6 9.2 101 5-112 117-217 (538)
54 3pih_A Uvrabc system protein A 99.8 6.4E-19 2.2E-23 200.2 12.4 109 5-120 783-901 (916)
55 2iw3_A Elongation factor 3A; a 99.8 1E-18 3.4E-23 198.9 12.3 107 4-119 525-633 (986)
56 2vf7_A UVRA2, excinuclease ABC 99.8 1E-18 3.4E-23 197.1 11.2 109 4-119 707-825 (842)
57 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.5E-18 8.7E-23 155.3 11.2 79 29-109 55-141 (148)
58 2r6f_A Excinuclease ABC subuni 99.8 2.1E-18 7.3E-23 194.9 12.3 108 5-119 823-940 (972)
59 4f4c_A Multidrug resistance pr 99.8 8.8E-19 3E-23 208.3 9.7 113 4-120 1184-1303(1321)
60 2r6f_A Excinuclease ABC subuni 99.7 2.7E-18 9.3E-23 194.0 12.7 109 4-120 482-599 (972)
61 3pih_A Uvrabc system protein A 99.7 2E-18 6.7E-23 196.2 10.5 107 6-119 443-558 (916)
62 2ygr_A Uvrabc system protein A 99.7 3.2E-18 1.1E-22 194.1 12.2 108 5-119 841-958 (993)
63 4f4c_A Multidrug resistance pr 99.7 4.5E-18 1.5E-22 202.2 11.6 113 4-120 521-640 (1321)
64 2ygr_A Uvrabc system protein A 99.7 6.5E-18 2.2E-22 191.5 11.8 108 4-119 499-615 (993)
65 2vf7_A UVRA2, excinuclease ABC 99.7 1.1E-17 3.7E-22 188.7 12.6 110 3-120 356-474 (842)
66 2iw3_A Elongation factor 3A; a 99.7 4.1E-18 1.4E-22 193.9 8.8 103 4-115 877-981 (986)
67 3g5u_A MCG1178, multidrug resi 99.7 8E-18 2.7E-22 199.6 11.4 111 5-119 1139-1256(1284)
68 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 9.7E-18 3.3E-22 173.7 10.1 82 29-112 277-364 (365)
69 3g5u_A MCG1178, multidrug resi 99.7 1.5E-17 5.3E-22 197.2 11.6 112 5-120 494-612 (1284)
70 4aby_A DNA repair protein RECN 99.6 7.6E-16 2.6E-20 161.8 13.2 80 32-114 296-381 (415)
71 1e69_A Chromosome segregation 99.6 9.1E-15 3.1E-19 148.8 12.3 86 30-118 218-310 (322)
72 3qkt_A DNA double-strand break 99.5 8.4E-15 2.9E-19 150.1 9.3 76 29-106 246-327 (339)
73 3kta_B Chromosome segregation 99.5 1.3E-14 4.4E-19 134.3 9.6 78 29-109 62-145 (173)
74 4ad8_A DNA repair protein RECN 99.5 9.7E-15 3.3E-19 158.1 9.3 78 29-109 394-474 (517)
75 2o5v_A DNA replication and rep 99.5 2.4E-14 8.1E-19 147.5 9.6 83 29-119 262-354 (359)
76 2npi_A Protein CLP1; CLP1-PCF1 99.4 2.6E-15 8.8E-20 159.7 -4.6 101 7-119 218-336 (460)
77 3auy_A DNA double-strand break 99.4 4.4E-13 1.5E-17 139.0 11.2 100 5-107 243-360 (371)
78 1ye8_A Protein THEP1, hypothet 99.4 5.9E-13 2E-17 123.8 7.8 76 30-112 75-159 (178)
79 4gp7_A Metallophosphoesterase; 99.4 1.5E-13 5.1E-18 126.8 2.8 61 32-92 84-160 (171)
80 1w1w_A Structural maintenance 99.3 3.6E-12 1.2E-16 134.7 10.7 76 30-107 332-411 (430)
81 3b85_A Phosphate starvation-in 99.1 1.4E-12 4.7E-17 124.3 -3.4 52 35-92 108-159 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.1 2.6E-11 8.8E-16 131.4 5.8 80 29-109 351-444 (525)
83 1tq4_A IIGP1, interferon-induc 99.0 3.5E-11 1.2E-15 125.9 -2.3 92 5-103 135-248 (413)
84 3thx_A DNA mismatch repair pro 98.9 6.6E-10 2.3E-14 127.0 7.2 90 28-119 718-811 (934)
85 1cr0_A DNA primase/helicase; R 98.9 3E-09 1E-13 106.3 9.3 80 30-110 128-237 (296)
86 1znw_A Guanylate kinase, GMP k 98.7 1.3E-10 4.4E-15 110.2 -8.2 62 45-107 137-203 (207)
87 2pt7_A CAG-ALFA; ATPase, prote 98.6 3.8E-09 1.3E-13 107.6 0.7 68 34-110 225-292 (330)
88 2o8b_B DNA mismatch repair pro 98.6 2.5E-08 8.4E-13 115.4 7.4 83 32-117 852-938 (1022)
89 3thx_B DNA mismatch repair pro 98.6 2.4E-08 8.2E-13 113.9 6.7 70 30-102 734-805 (918)
90 2w0m_A SSO2452; RECA, SSPF, un 98.6 5.9E-08 2E-12 92.3 7.8 77 32-108 104-192 (235)
91 2v9p_A Replication protein E1; 98.6 3.3E-10 1.1E-14 113.8 -9.0 86 6-123 183-268 (305)
92 1nlf_A Regulatory protein REPA 98.6 7.4E-08 2.5E-12 95.4 7.7 78 7-92 99-182 (279)
93 2ehv_A Hypothetical protein PH 98.5 9.1E-08 3.1E-12 92.3 5.9 73 34-107 120-207 (251)
94 2cvh_A DNA repair and recombin 98.4 5.9E-07 2E-11 84.8 8.9 77 32-108 85-185 (220)
95 1tf7_A KAIC; homohexamer, hexa 98.4 5.1E-08 1.7E-12 105.5 0.2 72 38-109 126-211 (525)
96 3b9q_A Chloroplast SRP recepto 98.3 7.6E-08 2.6E-12 96.7 0.5 84 13-111 191-285 (302)
97 1ewq_A DNA mismatch repair pro 98.3 4.9E-07 1.7E-11 101.5 5.7 81 28-115 632-718 (765)
98 4a74_A DNA repair and recombin 98.2 1E-06 3.5E-11 83.7 5.8 102 4-109 73-201 (231)
99 2obl_A ESCN; ATPase, hydrolase 98.2 4E-08 1.4E-12 100.6 -5.3 77 30-119 170-253 (347)
100 3sop_A Neuronal-specific septi 98.2 1.3E-07 4.3E-12 93.5 -1.7 62 17-91 89-150 (270)
101 2og2_A Putative signal recogni 98.2 4E-07 1.4E-11 93.4 1.9 82 14-110 249-341 (359)
102 1wb9_A DNA mismatch repair pro 98.2 7.7E-07 2.6E-11 100.4 4.1 84 32-118 670-755 (800)
103 1pzn_A RAD51, DNA repair and r 98.2 1.2E-06 4.3E-11 89.6 5.2 109 5-117 180-311 (349)
104 2dpy_A FLII, flagellum-specifi 98.0 1.1E-07 3.7E-12 100.4 -5.5 77 30-119 257-342 (438)
105 3aez_A Pantothenate kinase; tr 98.0 2.9E-08 1E-12 100.2 -9.7 55 4-64 155-209 (312)
106 2eyu_A Twitching motility prot 98.0 3.2E-06 1.1E-10 83.0 4.8 61 38-107 87-147 (261)
107 1pui_A ENGB, probable GTP-bind 97.9 7.7E-06 2.6E-10 76.4 5.3 73 6-83 128-202 (210)
108 1z6g_A Guanylate kinase; struc 97.9 4.6E-08 1.6E-12 93.5 -10.5 89 5-103 105-205 (218)
109 2i3b_A HCR-ntpase, human cance 97.8 6.1E-07 2.1E-11 83.8 -4.2 78 30-114 82-169 (189)
110 3jvv_A Twitching mobility prot 97.8 8E-06 2.7E-10 83.8 3.1 59 41-108 188-246 (356)
111 3ec2_A DNA replication protein 97.8 1.5E-05 5.1E-10 73.0 4.2 50 45-94 96-146 (180)
112 3asz_A Uridine kinase; cytidin 97.7 4.8E-08 1.6E-12 92.2 -13.5 84 4-92 67-162 (211)
113 1n0w_A DNA repair protein RAD5 97.6 0.00025 8.5E-09 67.6 10.0 78 32-109 99-210 (243)
114 2bdt_A BH3686; alpha-beta prot 97.4 8.5E-07 2.9E-11 82.1 -10.3 81 33-120 96-183 (189)
115 2qnr_A Septin-2, protein NEDD5 97.2 1.2E-05 4.1E-10 80.5 -4.1 55 30-92 112-168 (301)
116 2kjq_A DNAA-related protein; s 97.2 0.00016 5.6E-09 64.4 3.2 50 45-95 79-129 (149)
117 3lda_A DNA repair protein RAD5 97.1 0.0011 3.7E-08 68.9 9.2 102 4-109 226-364 (400)
118 2jeo_A Uridine-cytidine kinase 97.0 2.4E-05 8.1E-10 75.7 -4.1 68 7-92 99-166 (245)
119 2r6a_A DNAB helicase, replicat 97.0 0.0028 9.6E-08 66.9 11.0 78 31-110 295-401 (454)
120 1sxj_E Activator 1 40 kDa subu 96.7 0.0016 5.6E-08 65.7 6.3 46 46-93 131-176 (354)
121 3szr_A Interferon-induced GTP- 96.7 0.0015 5.1E-08 71.6 5.8 77 48-124 145-240 (608)
122 2ewv_A Twitching motility prot 96.5 0.00093 3.2E-08 68.7 2.9 59 39-106 199-257 (372)
123 1lw7_A Transcriptional regulat 96.5 0.00013 4.6E-09 74.7 -3.4 84 32-119 259-353 (365)
124 1rj9_A FTSY, signal recognitio 96.3 0.0011 3.8E-08 66.2 1.9 56 32-92 203-259 (304)
125 2dr3_A UPF0273 protein PH0284; 96.1 0.013 4.4E-07 55.5 8.0 60 48-107 127-196 (247)
126 1nij_A Hypothetical protein YJ 96.0 0.00065 2.2E-08 68.3 -1.5 57 31-100 141-197 (318)
127 2qag_C Septin-7; cell cycle, c 95.8 0.0011 3.7E-08 69.3 -1.0 55 32-91 119-177 (418)
128 2bbw_A Adenylate kinase 4, AK4 95.8 0.00015 5.1E-09 69.9 -7.2 44 31-81 152-200 (246)
129 2zr9_A Protein RECA, recombina 95.7 0.028 9.6E-07 57.1 9.1 78 38-115 126-237 (349)
130 1odf_A YGR205W, hypothetical 3 95.7 0.00051 1.8E-08 68.2 -4.0 36 29-66 132-169 (290)
131 2f1r_A Molybdopterin-guanine d 95.6 0.00038 1.3E-08 63.6 -4.7 70 6-82 84-164 (171)
132 1udx_A The GTP-binding protein 95.3 0.0051 1.7E-07 64.1 1.9 69 30-103 251-320 (416)
133 2ce7_A Cell division protein F 94.9 0.048 1.6E-06 57.7 7.8 59 34-92 93-165 (476)
134 2xau_A PRE-mRNA-splicing facto 93.9 0.025 8.5E-07 63.7 3.2 71 31-102 190-262 (773)
135 1ni3_A YCHF GTPase, YCHF GTP-b 93.9 0.00022 7.5E-09 73.9 -12.6 68 49-119 139-211 (392)
136 2ius_A DNA translocase FTSK; n 93.7 0.0052 1.8E-07 65.6 -2.8 80 8-92 247-343 (512)
137 2z4s_A Chromosomal replication 92.8 0.031 1.1E-06 58.6 1.5 70 49-118 194-265 (440)
138 1s96_A Guanylate kinase, GMP k 92.8 0.073 2.5E-06 50.2 4.0 51 43-108 101-151 (219)
139 3euj_A Chromosome partition pr 91.8 0.25 8.4E-06 52.3 6.9 71 29-106 377-464 (483)
140 1g5t_A COB(I)alamin adenosyltr 91.4 0.16 5.5E-06 47.0 4.4 72 37-109 106-181 (196)
141 1zp6_A Hypothetical protein AT 91.3 0.025 8.4E-07 51.5 -1.3 52 30-89 108-159 (191)
142 1vma_A Cell division protein F 90.7 0.23 8E-06 49.3 5.2 45 32-79 166-213 (306)
143 4a1f_A DNAB helicase, replicat 90.5 0.3 1E-05 49.2 5.8 50 32-86 110-161 (338)
144 2gza_A Type IV secretion syste 90.3 0.069 2.4E-06 54.4 0.9 68 33-109 236-303 (361)
145 2px0_A Flagellar biosynthesis 90.2 0.12 4.1E-06 51.1 2.5 70 39-113 174-247 (296)
146 1ls1_A Signal recognition part 89.1 0.6 2.1E-05 45.9 6.7 45 33-77 164-209 (295)
147 2e87_A Hypothetical protein PH 88.7 0.49 1.7E-05 47.8 5.8 61 30-92 230-293 (357)
148 1lw7_A Transcriptional regulat 88.0 0.29 9.8E-06 49.7 3.5 28 32-59 297-329 (365)
149 3bh0_A DNAB-like replicative h 87.7 1.6 5.3E-05 43.2 8.7 27 32-58 134-160 (315)
150 2b8t_A Thymidine kinase; deoxy 84.8 1.4 4.7E-05 41.5 6.2 53 49-106 89-150 (223)
151 1lvg_A Guanylate kinase, GMP k 84.6 0.018 6.1E-07 53.4 -7.0 54 45-107 120-173 (198)
152 3b9p_A CG5977-PA, isoform A; A 83.6 2.7 9.3E-05 40.5 8.0 72 33-104 97-185 (297)
153 1oix_A RAS-related protein RAB 80.4 0.42 1.4E-05 43.3 0.6 39 37-77 151-189 (191)
154 2orv_A Thymidine kinase; TP4A 75.5 5.2 0.00018 37.8 6.6 55 46-106 87-150 (234)
155 2qag_B Septin-6, protein NEDD5 74.4 1.7 5.7E-05 45.1 3.2 58 30-90 160-218 (427)
156 2eyu_A Twitching motility prot 73.7 0.0055 1.9E-07 59.8 -15.0 69 19-90 161-239 (261)
157 1fnn_A CDC6P, cell division co 72.9 5.5 0.00019 39.7 6.6 44 48-92 124-170 (389)
158 2rcn_A Probable GTPase ENGC; Y 72.0 1.2 3.9E-05 45.3 1.3 55 4-79 292-346 (358)
159 1l8q_A Chromosomal replication 70.1 3.5 0.00012 40.5 4.3 47 47-93 96-143 (324)
160 2w58_A DNAI, primosome compone 69.2 3 0.0001 37.7 3.3 52 47-98 113-166 (202)
161 1xx6_A Thymidine kinase; NESG, 68.9 8.5 0.00029 35.0 6.4 53 49-106 81-142 (191)
162 1u94_A RECA protein, recombina 68.8 19 0.00064 36.2 9.4 76 39-114 129-238 (356)
163 1v5w_A DMC1, meiotic recombina 67.5 8 0.00027 38.6 6.4 54 38-91 204-274 (343)
164 2z43_A DNA repair and recombin 66.3 4.4 0.00015 40.1 4.1 83 5-91 156-258 (324)
165 2ewv_A Twitching motility prot 65.8 0.011 3.7E-07 60.7 -15.6 60 32-93 284-353 (372)
166 3c8u_A Fructokinase; YP_612366 65.7 0.053 1.8E-06 50.4 -9.6 57 31-101 111-168 (208)
167 1in4_A RUVB, holliday junction 65.7 0.37 1.3E-05 48.2 -4.0 35 30-80 161-195 (334)
168 2f9l_A RAB11B, member RAS onco 65.5 3.8 0.00013 36.8 3.2 37 40-78 130-166 (199)
169 2qtf_A Protein HFLX, GTP-bindi 65.1 3.6 0.00012 41.6 3.3 69 6-79 280-353 (364)
170 2qm8_A GTPase/ATPase; G protei 64.7 2.8 9.6E-05 41.9 2.3 46 30-79 209-260 (337)
171 2oap_1 GSPE-2, type II secreti 64.2 0.0069 2.4E-07 64.8 -18.0 56 31-99 400-457 (511)
172 2j9r_A Thymidine kinase; TK1, 63.7 10 0.00034 35.4 5.8 54 49-107 101-163 (214)
173 2q6t_A DNAB replication FORK h 63.2 25 0.00085 36.2 9.4 60 48-107 309-397 (444)
174 3k1j_A LON protease, ATP-depen 61.9 1.7 5.9E-05 47.1 0.2 46 30-76 182-227 (604)
175 3e70_C DPA, signal recognition 56.5 13 0.00044 36.9 5.5 45 40-91 234-279 (328)
176 3bgw_A DNAB-like replicative h 54.9 37 0.0013 35.0 8.9 59 49-107 308-394 (444)
177 3hr8_A Protein RECA; alpha and 54.7 56 0.0019 32.7 9.9 72 38-109 126-231 (356)
178 2qgz_A Helicase loader, putati 54.2 9.4 0.00032 37.4 4.0 53 47-99 212-266 (308)
179 2r8r_A Sensor protein; KDPD, P 53.0 16 0.00056 34.2 5.3 48 42-89 77-125 (228)
180 1jjv_A Dephospho-COA kinase; P 50.5 2.1 7.3E-05 38.9 -1.3 70 33-106 61-131 (206)
181 4ag6_A VIRB4 ATPase, type IV s 49.5 22 0.00076 35.7 6.1 45 49-93 262-309 (392)
182 3d8b_A Fidgetin-like protein 1 49.0 42 0.0014 33.3 8.0 53 39-91 166-231 (357)
183 3bos_A Putative DNA replicatio 48.4 13 0.00044 33.8 3.8 45 48-92 103-149 (242)
184 2x8a_A Nuclear valosin-contain 47.9 0.092 3.1E-06 51.2 -11.7 28 31-60 137-164 (274)
185 2qby_A CDC6 homolog 1, cell di 47.1 4 0.00014 40.5 -0.0 44 49-92 128-174 (386)
186 4dgh_A Sulfate permease family 46.4 30 0.001 28.7 5.5 51 47-99 46-97 (130)
187 2orw_A Thymidine kinase; TMTK, 45.8 14 0.00047 33.2 3.4 54 49-107 76-138 (184)
188 1p9r_A General secretion pathw 44.7 0.62 2.1E-05 48.3 -6.6 37 9-54 278-314 (418)
189 1m3s_A Hypothetical protein YC 42.1 40 0.0014 29.7 6.0 42 68-109 93-134 (186)
190 2ks1_B Epidermal growth factor 40.4 37 0.0013 23.2 4.0 16 510-525 29-44 (44)
191 3h4m_A Proteasome-activating n 40.0 34 0.0011 32.3 5.4 51 41-91 102-166 (285)
192 2l2t_A Receptor tyrosine-prote 39.8 38 0.0013 23.1 4.0 16 510-525 28-43 (44)
193 3cf0_A Transitional endoplasmi 39.8 39 0.0013 32.5 5.9 51 42-92 101-165 (301)
194 1njg_A DNA polymerase III subu 39.5 16 0.00053 33.0 2.8 42 49-92 126-167 (250)
195 4dgf_A Sulfate transporter sul 39.3 39 0.0013 28.3 5.1 50 48-99 50-100 (135)
196 3sho_A Transcriptional regulat 38.2 44 0.0015 29.4 5.6 42 68-109 101-142 (187)
197 1b9m_A Protein (mode); DNA-bin 37.3 13 0.00045 35.1 2.0 41 5-51 53-93 (265)
198 1tk9_A Phosphoheptose isomeras 37.3 40 0.0014 29.6 5.2 41 68-108 124-164 (188)
199 2xhz_A KDSD, YRBH, arabinose 5 36.6 44 0.0015 29.3 5.3 41 68-108 110-150 (183)
200 2xbl_A Phosphoheptose isomeras 35.9 48 0.0016 29.4 5.5 41 68-108 130-170 (198)
201 2i1q_A DNA repair and recombin 35.6 35 0.0012 33.2 4.8 69 40-108 192-291 (322)
202 3fxa_A SIS domain protein; str 35.2 37 0.0013 30.4 4.6 41 68-108 106-146 (201)
203 3llm_A ATP-dependent RNA helic 34.8 43 0.0015 30.7 5.1 67 33-101 162-229 (235)
204 3llo_A Prestin; STAS domain, c 34.5 57 0.002 27.3 5.5 50 49-100 63-113 (143)
205 1vim_A Hypothetical protein AF 34.0 56 0.0019 29.3 5.6 61 49-109 73-144 (200)
206 2qz4_A Paraplegin; AAA+, SPG7, 34.0 92 0.0032 28.5 7.4 51 42-92 91-156 (262)
207 3szr_A Interferon-induced GTP- 33.6 18 0.00062 39.1 2.5 59 30-89 163-223 (608)
208 1xp8_A RECA protein, recombina 33.4 1.3E+02 0.0046 29.9 8.9 72 39-110 140-245 (366)
209 3oiz_A Antisigma-factor antago 33.2 27 0.00092 27.7 2.9 53 47-101 41-94 (99)
210 1q57_A DNA primase/helicase; d 33.1 1.4E+02 0.0047 31.0 9.2 59 48-107 353-441 (503)
211 1sbo_A Putative anti-sigma fac 32.1 1.2E+02 0.0041 23.6 6.8 56 42-99 35-92 (110)
212 3etn_A Putative phosphosugar i 31.3 73 0.0025 29.1 6.0 43 67-109 119-163 (220)
213 1x92_A APC5045, phosphoheptose 31.2 76 0.0026 28.2 6.0 41 68-108 127-170 (199)
214 3fj1_A Putative phosphosugar i 29.5 73 0.0025 31.5 6.1 43 67-109 104-146 (344)
215 3ny7_A YCHM protein, sulfate t 29.4 34 0.0012 28.0 3.0 51 48-101 44-95 (118)
216 2i2w_A Phosphoheptose isomeras 28.8 62 0.0021 29.3 5.0 41 68-108 145-185 (212)
217 3eua_A Putative fructose-amino 28.1 78 0.0027 31.0 5.9 43 67-109 87-129 (329)
218 3co5_A Putative two-component 27.2 84 0.0029 26.3 5.3 43 48-91 74-116 (143)
219 1srr_A SPO0F, sporulation resp 26.7 1.9E+02 0.0064 22.5 7.2 40 47-90 45-84 (124)
220 3hu3_A Transitional endoplasmi 26.5 69 0.0024 33.4 5.4 51 42-92 290-351 (489)
221 2yva_A DNAA initiator-associat 26.5 1.1E+02 0.0036 27.0 6.1 41 68-108 123-166 (196)
222 2kln_A Probable sulphate-trans 26.3 42 0.0014 27.8 3.1 50 49-100 47-97 (130)
223 3cmw_A Protein RECA, recombina 26.1 2.3E+02 0.0079 34.5 10.3 79 37-115 796-908 (1706)
224 1ega_A Protein (GTP-binding pr 25.6 33 0.0011 33.2 2.6 64 32-103 101-170 (301)
225 3jte_A Response regulator rece 25.3 1.3E+02 0.0045 24.2 6.1 39 48-90 48-87 (143)
226 2qp9_X Vacuolar protein sortin 25.2 2.2E+02 0.0076 27.8 8.8 62 42-103 136-212 (355)
227 1xwi_A SKD1 protein; VPS4B, AA 25.1 2.4E+02 0.0082 27.2 8.9 50 42-91 98-159 (322)
228 3trj_A Phosphoheptose isomeras 24.7 90 0.0031 28.1 5.3 41 68-108 128-171 (201)
229 4fcw_A Chaperone protein CLPB; 24.7 1.2E+02 0.0042 28.6 6.6 56 42-98 111-177 (311)
230 1jeo_A MJ1247, hypothetical pr 24.1 80 0.0027 27.4 4.7 39 68-107 96-134 (180)
231 3hba_A Putative phosphosugar i 24.0 88 0.003 30.8 5.4 43 67-109 103-145 (334)
232 1tmy_A CHEY protein, TMY; chem 23.8 1.8E+02 0.006 22.4 6.5 40 48-90 46-85 (120)
233 4b4t_L 26S protease subunit RP 23.6 1.5E+02 0.0052 30.4 7.3 75 38-118 263-354 (437)
234 4b4t_M 26S protease regulatory 23.4 1.3E+02 0.0044 30.9 6.6 74 39-118 264-354 (434)
235 2rdm_A Response regulator rece 23.4 2.6E+02 0.0088 21.8 7.5 40 49-91 50-90 (132)
236 3k7i_B IHH, HHG-2, indian hedg 23.2 25 0.00087 31.5 1.1 34 47-80 69-102 (187)
237 3fkj_A Putative phosphosugar i 23.1 1E+02 0.0035 30.5 5.7 42 67-108 102-143 (347)
238 1sxj_D Activator 1 41 kDa subu 23.0 47 0.0016 32.2 3.2 42 49-92 133-174 (353)
239 4b4t_I 26S protease regulatory 22.8 1.4E+02 0.0048 30.7 6.7 78 35-118 260-355 (437)
240 2chg_A Replication factor C sm 22.7 71 0.0024 28.0 4.1 43 48-92 101-143 (226)
241 1lv7_A FTSH; alpha/beta domain 22.2 1.8E+02 0.0063 26.5 7.1 48 45-92 100-161 (257)
242 3rhz_A GTF3, nucleotide sugar 21.8 2.2E+02 0.0074 27.9 7.8 84 3-93 30-114 (339)
243 4b4t_J 26S protease regulatory 20.9 2.8E+02 0.0097 28.1 8.6 74 39-118 231-321 (405)
244 3hzh_A Chemotaxis response reg 20.9 1.8E+02 0.0061 24.0 6.2 40 49-91 83-122 (157)
245 3f6c_A Positive transcription 20.8 1.7E+02 0.0059 23.0 5.9 39 48-90 45-83 (134)
246 1jcn_A Inosine monophosphate d 20.7 0.74 2.5E-05 49.0 -11.4 72 44-122 28-103 (514)
247 3a10_A Response regulator; pho 20.7 2.2E+02 0.0075 21.6 6.4 39 48-89 44-82 (116)
248 2ka5_A Putative anti-sigma fac 20.5 1.9E+02 0.0066 23.4 6.1 51 47-99 49-100 (125)
249 1dbw_A Transcriptional regulat 20.3 1.5E+02 0.0052 23.2 5.4 41 48-92 46-86 (126)
250 2zts_A Putative uncharacterize 20.3 1.2E+02 0.0041 27.4 5.3 60 47-106 133-206 (251)
251 1zgz_A Torcad operon transcrip 20.3 2.7E+02 0.0093 21.3 7.0 40 48-92 45-84 (122)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=2.5e-25 Score=221.67 Aligned_cols=111 Identities=24% Similarity=0.454 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA-QSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ ++|
T Consensus 120 ~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g 194 (275)
T 3gfo_A 120 IRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194 (275)
T ss_dssp HHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCC
Confidence 356899999999999988888765 99999999999999999999999999999999999999999999998 569
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. .+.++||+|++|++|++++.|+++++
T Consensus 195 ~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 195 ITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp CEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999987 58889999999999999999998765
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=3.5e-25 Score=227.69 Aligned_cols=111 Identities=23% Similarity=0.444 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++|+.+||.+.+++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.+++++|++++++ |
T Consensus 140 ~~~~v~~lL~~vgL~~~~~~~~~~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g 214 (366)
T 3tui_C 140 VKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214 (366)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCTTT-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 456899999999999988887765 9999999999999999999999999999999999999999999999865 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|||++||++. .+.++||||++|++|++++.|++.++
T Consensus 215 ~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 215 LTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp CEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999986 68899999999999999999988665
No 3
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=1.1e-24 Score=215.33 Aligned_cols=109 Identities=20% Similarity=0.389 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 131 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 205 (257)
T 1g6h_A 131 VEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 205 (257)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCchhhCCCchh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 45789999999999988888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMN 118 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~ 118 (525)
||+++|++. ++.++||++++|++|++++.|++++
T Consensus 206 vi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 206 FLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999987 5788999999999999999998866
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=1.1e-24 Score=215.81 Aligned_cols=110 Identities=28% Similarity=0.538 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 137 ~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 211 (263)
T 2olj_A 137 EAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211 (263)
T ss_dssp HHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 46789999999999888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 212 vi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 212 MVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999986 68889999999999999999987654
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=9.5e-25 Score=216.33 Aligned_cols=110 Identities=26% Similarity=0.469 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||.+. .++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 130 ~~~~~~~l~~~~L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~ 204 (262)
T 1b0u_A 130 RERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 204 (262)
T ss_dssp HHHHHHHHHHTTCCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 4678999999999988 8888765 999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus 205 tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 205 TMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp CEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999986 68889999999999999999987654
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.5e-24 Score=215.35 Aligned_cols=111 Identities=27% Similarity=0.412 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIH------DPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~------~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.+++++++++.++|.+..++.+++ ||||||||++||++|+. +|++|+|||||+|||+.++.++++.|++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSBGGG-----CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 456899999999999988888765 99999999999999999 9999999999999999999999999999
Q ss_pred HHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++++ |+|||+++|+++ ++.++||+|++|++|++++.|+++++
T Consensus 193 l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 193 LTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9876 569999999986 68889999999999999999998765
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=2.7e-24 Score=208.27 Aligned_cols=106 Identities=32% Similarity=0.510 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~t 192 (224)
T 2pcj_A 118 KERGEYLLSELGLGDKLSRKPYE-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192 (224)
T ss_dssp HHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 45789999999999888888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCC
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSP 116 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~ 116 (525)
||+++|++. .+ ++||++++|++|++++.|+.
T Consensus 193 vi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 193 IVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp EEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999976 45 89999999999999999864
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=3.2e-24 Score=209.19 Aligned_cols=110 Identities=22% Similarity=0.439 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 037973 3 KKIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS- 80 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~- 80 (525)
.++++.++++.++|.+. .++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++.++++.|++++++
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~ 195 (235)
T 3tif_A 121 RRKRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195 (235)
T ss_dssp HHHHHHHHHHHTTCCGGGTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChhhhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 34678899999999875 3776654 9999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|||++||++. +.++||+|++|++|+++..+++++.
T Consensus 196 g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 196 GKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp CCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999985 4589999999999999999988764
No 9
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=1.5e-24 Score=212.15 Aligned_cols=110 Identities=25% Similarity=0.412 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+++|++|+|||||+|||+.++..+++.|++++++ |+
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999888888765 9999999999999999999999999999999999999999999999764 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 179 tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 179 PILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp CEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999986 58889999999999999999987654
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=2.5e-24 Score=212.44 Aligned_cols=110 Identities=31% Similarity=0.424 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 124 ~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 124 EEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp HHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHCCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 35789999999999988888765 9999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. ++..+||++++|++|++++.|+++++
T Consensus 199 iiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 199 ILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp EEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHH
Confidence 999999986 68889999999999999999987655
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=2.9e-24 Score=220.72 Aligned_cols=111 Identities=24% Similarity=0.456 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g 81 (525)
.+++++++++.+||++..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+..+.++.+.|+++.+ .|
T Consensus 115 ~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g 189 (359)
T 3fvq_A 115 ERQRIEAMLELTGISELAGRYPHE-----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189 (359)
T ss_dssp HHHHHHHHHHHHTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 457899999999999998888765 999999999999999999999999999999999999999998888764 69
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|||++|++|+++..|+++++
T Consensus 190 ~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 190 KSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp CEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999986 78999999999999999999998765
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=3.3e-24 Score=221.76 Aligned_cols=111 Identities=28% Similarity=0.501 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+.+ |||||||||+||+||+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~p~~-----LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCChhH-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 457899999999999988888765 9999999999999999999999999999999999999999999999765 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|||++|++|+++..|+++++
T Consensus 185 ~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 185 RTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp CEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 99999999986 78999999999999999999998765
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=3.1e-24 Score=209.95 Aligned_cols=110 Identities=28% Similarity=0.456 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLG-LRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~-L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.++ |.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+
T Consensus 116 ~~~~~~~l~~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ 190 (240)
T 1ji0_A 116 KRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190 (240)
T ss_dssp HHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcccHhhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 467888999995 98877877655 999999999999999999999999999999999999999999999987899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 191 tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 191 TILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp CEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999986 58889999999999999999887554
No 14
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=5.5e-24 Score=211.32 Aligned_cols=110 Identities=31% Similarity=0.548 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 4 KIRVQALIDQLGLR--NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~--~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcCCcccccCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 56789999999998 888887765 99999999999999999999999999999999999999999999998779
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|||+++|++. .+..+||++++|++|++++.|+++++
T Consensus 189 ~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 189 KTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp CEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999987 57788999999999999999987655
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.90 E-value=5.9e-24 Score=218.48 Aligned_cols=111 Identities=23% Similarity=0.438 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999988888765 9999999999999999999999999999999999999999999999865 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 197 ~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 197 VTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp CEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999976 68899999999999999999998765
No 16
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=4.3e-24 Score=213.33 Aligned_cols=110 Identities=26% Similarity=0.481 Sum_probs=101.6
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 139 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~t 213 (279)
T 2ihy_A 139 RNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213 (279)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCE
Confidence 45788999999999988888765 9999999999999999999999999999999999999999999999877999
Q ss_pred E--EEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 V--IMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 v--i~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
| |+++|++. ++.++||++++|++|++++.|+++++
T Consensus 214 v~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 214 LAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9 99999986 57789999999999999999987554
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=8.1e-24 Score=217.89 Aligned_cols=110 Identities=23% Similarity=0.443 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |.
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~~~-----LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 185 (359)
T 2yyz_A 111 EKRVVEIARKLLIDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185 (359)
T ss_dssp THHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999988888765 9999999999999999999999999999999999999999999999765 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 186 tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 186 TSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp EEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999976 68899999999999999999998765
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=6.8e-24 Score=218.40 Aligned_cols=111 Identities=27% Similarity=0.504 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 117 ~~~~v~~~l~~~~L~~~~~~~~~~-----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 191 (353)
T 1oxx_K 117 IRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191 (353)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999988888765 9999999999999999999999999999999999999999999999765 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 192 ~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 192 VTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp CEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999976 68899999999999999999998765
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=9.2e-24 Score=208.12 Aligned_cols=109 Identities=29% Similarity=0.468 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~ 82 (525)
+++++++++.+||.+..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 106 YQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHcCChHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999988888765 9999999999999999999999999999999999999999999999877 99
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+.++||++++|++|+ ++.|+++++
T Consensus 181 tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 181 TVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp EEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred EEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999986 5788999999999999 998876554
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=6.9e-24 Score=218.64 Aligned_cols=111 Identities=25% Similarity=0.453 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCchHhhCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC
Confidence 356899999999999988888765 9999999999999999999999999999999999999999999999765 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 185 ~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 185 ITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp CEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999976 68899999999999999999998765
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.1e-23 Score=218.12 Aligned_cols=111 Identities=28% Similarity=0.487 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 116 ~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 190 (372)
T 1g29_1 116 IDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (372)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCchHhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999988888765 9999999999999999999999999999999999999999999999765 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 191 ~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 191 VTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp CEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999976 68899999999999999999998765
No 22
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=1.9e-23 Score=207.50 Aligned_cols=112 Identities=24% Similarity=0.284 Sum_probs=99.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.++ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~ 215 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 215 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 35788999999996 56676654 14999999999999999999999999999999999999999999999977799
Q ss_pred EEEEEeCCCchHHHhh-cCeEEEeeCCcEEEecCCCChh
Q 037973 83 IVIMSIHQPSYRILGL-LDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~-~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
|||+++|++. .+..+ ||++++|++|++++.|+++++.
T Consensus 216 tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 216 SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred EEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999986 46665 8999999999999999987653
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.89 E-value=1.1e-23 Score=217.84 Aligned_cols=111 Identities=26% Similarity=0.432 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-G 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g 81 (525)
.+++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~~~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCTTT-----CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999988888765 9999999999999999999999999999999999999999999999865 9
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.|+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 193 ~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 193 VTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp CEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999976 68899999999999999999998765
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=1.5e-23 Score=206.07 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI-------LLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~-------illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++.+||++..++.+++ ||||||||++||++|+.+|+ +|+|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 46789999999999988887765 99999999999999999999 9999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
++++|+|||+++|++. .+.+++|++++|++|++++.|+++++
T Consensus 179 l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 179 LSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp HHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9878999999999986 57789999999999999999886554
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=2.1e-23 Score=205.28 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGL-RNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L-~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+|| .+..++.+++ +||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus 119 ~~~~~~~l~~~gl~~~~~~~~~~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 194 (250)
T 2d2e_A 119 WTKVKKALELLDWDESYLSRYLNE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194 (250)
T ss_dssp HHHHHHHHHHHTCCGGGGGSBTTC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTC
T ss_pred HHHHHHHHHHcCCChhHhcCCccc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999 5777777642 3999999999999999999999999999999999999999999999977799
Q ss_pred EEEEEeCCCchHHHhh-cCeEEEeeCCcEEEecCCC
Q 037973 83 IVIMSIHQPSYRILGL-LDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~-~d~v~~l~~G~~v~~G~~~ 117 (525)
|||+++|++. .+..+ ||++++|++|++++.|+++
T Consensus 195 tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 195 GALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp EEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred EEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999987 56677 5999999999999999865
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=1.6e-23 Score=214.93 Aligned_cols=109 Identities=24% Similarity=0.379 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSI 83 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~t 83 (525)
++++++++.++|++..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.++ |.|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 6899999999999988888765 9999999999999999999999999999999999999999999999764 999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|++||++. ++..++|+|++|++|+++..|+++++
T Consensus 181 ii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 181 VLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp EEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred EEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999976 68899999999999999999998665
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.2e-22 Score=201.14 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||+ +..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~~~-----LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--- 176 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKLYK-----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--- 176 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBGGG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHHHcCCChhHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence 56789999999998 888888765 999999999999999999999999999999999999999999999854
Q ss_pred EEEEEeCCCchHHHhhcC-eEEEeeCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLD-RMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d-~v~~l~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+.++|| ++++|++|++++.|+++++
T Consensus 177 tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 177 EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHH
Confidence 9999999986 5778999 9999999999999987655
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=2.1e-22 Score=197.71 Aligned_cols=113 Identities=28% Similarity=0.475 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIG------DEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg------~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++++++++.+++.+..++... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567888999999876654421 1234679999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ +|+|||+++|++. .+ +.||++++|++|++++.|+++++
T Consensus 192 ~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 192 C-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp H-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHH
T ss_pred c-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHH
Confidence 5 6999999999987 34 45999999999999999987654
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=1.8e-22 Score=200.84 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=92.5
Q ss_pred HHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCE
Q 037973 7 VQALIDQL--GLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSI 83 (525)
Q Consensus 7 v~~~l~~l--~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~t 83 (525)
++++++.+ ||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+|
T Consensus 135 ~~~~l~~l~~gl~~~~~~~~~-----~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 135 AHDFISGFPQGYDTEVGETGN-----QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp CHHHHHHSTTGGGSBCCGGGT-----TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred HHHHHHhhhcchhhhhcCCcC-----CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 45667777 67766666655 4999999999999999999999999999999999999999999999875 5899
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
||+++|++. .+. .||+|++|++|+++..|+++++
T Consensus 210 viivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 210 VLLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQL 243 (271)
T ss_dssp EEEECSCHH-HHT-TCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHHH
Confidence 999999986 454 5999999999999999987654
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=2.6e-22 Score=196.69 Aligned_cols=113 Identities=30% Similarity=0.434 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIG------DEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg------~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++++++++.+++.+..++... +..+..||||||||++||++|+++|++|+|||||+|||+.++..+++.|+++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 4568889999999876654321 1234679999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ +|+|||+++|++. .+ +.||++++|++|+++..|+++++
T Consensus 186 ~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 186 M-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp H-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred c-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 7 6999999999986 45 46999999999999998887554
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=1.1e-21 Score=198.13 Aligned_cols=112 Identities=28% Similarity=0.473 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.++++++++..++.+.. ++.+|. ....||||||||++|||||+.+|+||||||||++||+.+...+.+.|++
T Consensus 157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 34677777877776543 445543 3457999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.+ ++|+|+++|+++ .+.. ||+|++|++|++++.|+++++
T Consensus 236 l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el 275 (306)
T 3nh6_A 236 VCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEAL 275 (306)
T ss_dssp HHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHH
T ss_pred HcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHH
Confidence 864 789999999987 4555 999999999999999998665
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=1.3e-21 Score=193.49 Aligned_cols=112 Identities=29% Similarity=0.492 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++.+++.+.. ++.++. .+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 34567788888876543 333332 3567999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+++ |+|||+++|++.. + +.||++++|++|+++..|+++++
T Consensus 201 l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l 240 (260)
T 2ghi_A 201 LRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDL 240 (260)
T ss_dssp HTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHH
T ss_pred hcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHH
Confidence 964 8999999999873 4 46999999999999999987654
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=202.65 Aligned_cols=114 Identities=18% Similarity=0.339 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHcCCcccccccccC------CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGD------EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~------~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.+++++++++.++|.+..++.... +....|||||||||+||+||+.+|++|||||||+|||+..+.++.+.|++
T Consensus 121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 356789999999999877766532 12234999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. ++.|+|+++|++. ....+|+|++|++|+++..|++.++
T Consensus 201 ~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 201 AF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp TT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHH
T ss_pred Hh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHH
Confidence 64 5789999999974 4567999999999999999998765
No 34
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=1.5e-20 Score=206.96 Aligned_cols=114 Identities=27% Similarity=0.442 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQ 75 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~ 75 (525)
.+++++++++.+++.+. .|+.+|+ ....||||||||++|||+|+++|++|+|||||++||+.+...+.+.|+
T Consensus 449 ~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 527 (595)
T 2yl4_A 449 TAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALD 527 (595)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 35678899999988654 4666654 346799999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 76 RIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 76 ~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
++.+ |+|+|+++|+++ .+ +.||+|++|++|++++.|+++++.
T Consensus 528 ~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 528 RLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 9876 899999999986 35 469999999999999999998863
No 35
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-20 Score=207.42 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
.+.++++++.++|.+.+++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..++++|+++++ +|.
T Consensus 445 ~~~~~~~l~~l~l~~~~~~~~~~-----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~ 519 (608)
T 3j16_B 445 PQFQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519 (608)
T ss_dssp HHHHHHTHHHHTSTTTSSSBSSS-----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35678899999999988888765 999999999999999999999999999999999999999999999964 699
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC--CcEEEecCCCChh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR--GQTVYSGSPMNLP 120 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~--G~~v~~G~~~~~~ 120 (525)
|||+++|++. ++..++|||++|++ |+++..|+|+++.
T Consensus 520 tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 520 TAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp EEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 9999999986 68899999999996 8999999998874
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=4e-21 Score=184.43 Aligned_cols=96 Identities=22% Similarity=0.350 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||++. ++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~~~-----LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBGGG-----SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHcCCCcC-CCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4678999999999887 776654 9999999999999999999999999999999999999999999999877999
Q ss_pred EEEEeCCCchHHHhhcCeEEEee
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
||+++|++. ++..++|++++++
T Consensus 186 iiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 186 VIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp EEEEESSCC-TTSSEEEEGGGGB
T ss_pred EEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999987 5778888877543
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.82 E-value=2.5e-20 Score=204.77 Aligned_cols=112 Identities=25% Similarity=0.390 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++.+++.+.. |+.+|+ ....||||||||++|||+|+++|++|+|||||++||+.+...+.+.|++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 46788889988887643 455554 3467999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.+ |+|+|+++|+++. + +.||+|++|++|++++.|+++++
T Consensus 526 ~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 526 LQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHH
T ss_pred HhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHH
Confidence 865 9999999999873 4 57999999999999999987665
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=1.2e-20 Score=183.28 Aligned_cols=110 Identities=23% Similarity=0.409 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q 037973 6 RVQALIDQLGLRNAAKT-------VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKV-LQRI 77 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~-------~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l 77 (525)
++++.++.+++.+..+. .++. ....||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence 34556666676554332 2222 2467999999999999999999999999999999999999999997 4666
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
. +|+|||+++|++. .+. .||++++|++|++++.|+++++
T Consensus 178 ~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 178 M-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp T-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHHH
T ss_pred h-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHHH
Confidence 4 4899999999976 454 5999999999999999987654
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=183.75 Aligned_cols=89 Identities=24% Similarity=0.389 Sum_probs=79.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 28 GHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQ---RIAQSGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
.+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||+++|++.. + +.||++++
T Consensus 124 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~ 200 (237)
T 2cbz_A 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIV 200 (237)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEE
Confidence 356799999999999999999999999999999999999999999995 443 58999999999874 4 57999999
Q ss_pred eeCCcEEEecCCCCh
Q 037973 105 LSRGQTVYSGSPMNL 119 (525)
Q Consensus 105 l~~G~~v~~G~~~~~ 119 (525)
|++|+++..|+++++
T Consensus 201 l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 201 MSGGKISEMGSYQEL 215 (237)
T ss_dssp EETTEEEEEECHHHH
T ss_pred EeCCEEEEeCCHHHH
Confidence 999999999987654
No 40
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=4.8e-20 Score=202.44 Aligned_cols=112 Identities=24% Similarity=0.399 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+||.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|.
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 523 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCchHhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35688999999999888888876 999999999999999999999999999999999999999999999975 689
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC--CcEEEecCCCChhh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR--GQTVYSGSPMNLPH 121 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~--G~~v~~G~~~~~~~ 121 (525)
|||+++||+. .+..+||+|++|++ |+++..|++.++..
T Consensus 524 tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 524 TALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999976 68889999999986 88889999988743
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=3.3e-20 Score=201.48 Aligned_cols=112 Identities=22% Similarity=0.388 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
+++++++++.+++.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~~~-----LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 453 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence 35678899999998888888766 999999999999999999999999999999999999999999999974 699
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC--CcEEEecCCCChhh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR--GQTVYSGSPMNLPH 121 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~--G~~v~~G~~~~~~~ 121 (525)
|||+++|++. ++..+||+|++|++ |+++..|+++++..
T Consensus 454 tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 454 TALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999976 68889999999986 78989999988643
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=3.5e-20 Score=203.57 Aligned_cols=112 Identities=28% Similarity=0.454 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
+++++++++.+++.+.. |+.+|+ ....||||||||++|||+|+++|++|+|||||++||+.+...+.+.|++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 46788899999987654 344554 3467999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+.+ |+|+|+++|+++ .+ +.||+|++|++|++++.|+++++
T Consensus 526 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 526 LQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHH
Confidence 864 999999999986 34 47999999999999999988665
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=5.3e-20 Score=202.22 Aligned_cols=112 Identities=21% Similarity=0.363 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++.+.++..++.+ -.|+.+|+ ....||||||||++|||||+++|++|+|||||++||+.+..++.+.|+++
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 45566666666544 34556654 45679999999999999999999999999999999999999999999998
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
. +|+|+|+++|+++ .+ +.||+|++|++|++++.|+++++.
T Consensus 526 ~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 526 T-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp S-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred C-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 4 5899999999986 34 589999999999999999987763
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.81 E-value=5.9e-20 Score=201.58 Aligned_cols=112 Identities=25% Similarity=0.397 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-------AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.+.++..++.+. .|+.+|+ ....||||||||++|||||+++|++|+|||||+|||+.+...+.+.+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 522 (578)
T 4a82_A 444 DEEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522 (578)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 4567777777776543 3555554 3457999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+. +++|+|+++|+++. + +.||+|++|++|++++.|+++++
T Consensus 523 ~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el 562 (578)
T 4a82_A 523 LS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHREL 562 (578)
T ss_dssp HT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHH
T ss_pred Hc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 85 47999999999874 4 56999999999999999998765
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=5.9e-20 Score=199.20 Aligned_cols=111 Identities=24% Similarity=0.395 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCC
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~ 82 (525)
...++++++.++|.+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~-----LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34678899999999888888765 999999999999999999999999999999999999999999999986 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeC--CcEEEecCCCChh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSR--GQTVYSGSPMNLP 120 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~--G~~v~~G~~~~~~ 120 (525)
|||+++|++. ++..+||||++|++ |.....|++.++.
T Consensus 438 tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 438 VTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999986 68889999999986 5677777776653
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.80 E-value=8.8e-20 Score=200.37 Aligned_cols=100 Identities=26% Similarity=0.408 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+||++..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus 207 ~~~~~~L~~lgL~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCchhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4688999999999999988876 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|+++|++. .+..++|+|++|+++..
T Consensus 282 IivsHdl~-~~~~~adri~vl~~~~~ 306 (607)
T 3bk7_A 282 LVVEHDLA-VLDYLSDVIHVVYGEPG 306 (607)
T ss_dssp EEECSCHH-HHHHHCSEEEEEESCTT
T ss_pred EEEecChH-HHHhhCCEEEEECCCcc
Confidence 99999976 68889999999987543
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=7.4e-20 Score=201.54 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAA-------KTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~-------~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
++++++++..++.+.. |+.+|+ ....||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4566666666665433 333432 23469999999999999999999999999999999999999999999998
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
. +|+|+|+++|+++ .+. .||+|++|++|++++.|+++++
T Consensus 538 ~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 538 M-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp H-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHHHH
T ss_pred c-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHH
Confidence 5 5899999999997 354 5999999999999999998765
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=1.5e-19 Score=201.78 Aligned_cols=108 Identities=30% Similarity=0.437 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.+.++.++|.+ ..++.+++ |||||||||+||++|+.+| ++|+|||||+|||+.++.+++++|++++++
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhccCCchh-----CCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45677888899864 34666554 9999999999999999887 599999999999999999999999999988
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. .+ +.||+|++| ++|++++.|+++++
T Consensus 596 g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 596 GDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 999999999986 34 679999999 89999999998765
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-19 Score=198.24 Aligned_cols=104 Identities=27% Similarity=0.358 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
+++++++++.+||.+..|+.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus 199 ~~~~~~~l~~~gl~~~~~~~~~~-----LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~t 273 (608)
T 3j16_B 199 PEDVKRYIKILQLENVLKRDIEK-----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273 (608)
T ss_dssp HHHHHHHHHHHTCTGGGGSCTTT-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCE
T ss_pred HHHHHHHHHHcCCcchhCCChHH-----CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 36899999999999999988876 9999999999999999999999999999999999999999999999988999
Q ss_pred EEEEeCCCchHHHhhcCeEEEeeCCcEEEe
Q 037973 84 VIMSIHQPSYRILGLLDRMIFLSRGQTVYS 113 (525)
Q Consensus 84 vi~~~H~~~~~v~~~~d~v~~l~~G~~v~~ 113 (525)
||+++|++. ++..++|+|++|.+|..++.
T Consensus 274 vi~vtHdl~-~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 274 VICVEHDLS-VLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp EEEECSCHH-HHHHHCSEEEEEESCTTTEE
T ss_pred EEEEeCCHH-HHHHhCCEEEEEeCCccccc
Confidence 999999986 68899999999998876554
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.79 E-value=9.1e-20 Score=198.03 Aligned_cols=99 Identities=24% Similarity=0.402 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+||++..++.+++ |||||||||+||++|+.+|++|+|||||++||+.++..+.+.|++++++|.||
T Consensus 137 ~~~~~~l~~lgl~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 137 GKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp SCHHHHHHHTTCTTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCChhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4688999999999888888766 99999999999999999999999999999999999999999999998889999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
|+++|++. .+.++||+|++|++|.
T Consensus 212 i~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 212 LVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEECSCHH-HHHHHCSEEEEEEEET
T ss_pred EEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 99999976 6888999999998754
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.79 E-value=9.9e-20 Score=182.59 Aligned_cols=110 Identities=24% Similarity=0.415 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Q 037973 6 RVQALIDQLGLRNAAKT-------VIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKV-LQRI 77 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~-------~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~-l~~l 77 (525)
++++.++.+++.+..+. .++ ...+.||||||||++||++|+.+|++|+|||||+|||+.++..+++. ++++
T Consensus 128 ~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~ 206 (290)
T 2bbs_A 128 RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206 (290)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 34556667777554332 222 12457999999999999999999999999999999999999999997 4555
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+ +|+|||+++|++. .+ +.||++++|++|++++.|+++++
T Consensus 207 ~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 207 M-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp T-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred h-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 4 5899999999985 45 46999999999999999987665
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=2e-19 Score=200.82 Aligned_cols=104 Identities=25% Similarity=0.440 Sum_probs=93.8
Q ss_pred HHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 037973 9 ALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI--LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 85 (525)
Q Consensus 9 ~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 85 (525)
++++.+||.+. .|+.+++ |||||||||+||++|+++|+ +|+|||||+|||+.++..+++.|++++++|.|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi 258 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 258 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 35888999764 5777765 99999999999999999998 9999999999999999999999999998899999
Q ss_pred EEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 86 MSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
+++|++. . ...||+|++| ++|++++.|+++++
T Consensus 259 ~vtHd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 259 VVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp EECCCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred EEeCCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999986 3 4569999999 89999999998765
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.78 E-value=2.3e-19 Score=194.59 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIV 84 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tv 84 (525)
++++++++.+|+.+..|+.+++ |||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti 190 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 3678999999999999988876 999999999999999999999999999999999999999999999976 9999
Q ss_pred EEEeCCCchHHHhhcCeEEEeeCCcEEE
Q 037973 85 IMSIHQPSYRILGLLDRMIFLSRGQTVY 112 (525)
Q Consensus 85 i~~~H~~~~~v~~~~d~v~~l~~G~~v~ 112 (525)
|+++|++. ++..+||+|++|++|..++
T Consensus 191 i~vsHdl~-~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 191 IVVDHDLI-VLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEECSCHH-HHHHHCSEEEEEEEETTTE
T ss_pred EEEEeChH-HHHhhCCEEEEecCCcccc
Confidence 99999986 7899999999998765543
No 54
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=6.4e-19 Score=200.18 Aligned_cols=109 Identities=29% Similarity=0.451 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
.++.++|+.+||... .+..+ ..|||||||||.||++|+.+| +||||||||+|||+.+...+++.|++++++
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~ 857 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 467788999999653 24444 359999999999999999875 799999999999999999999999999989
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~~ 120 (525)
|.|||+++|++. .+ +.+|+|++| ++|++++.|+++++.
T Consensus 858 G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 999999999985 34 569999999 899999999997763
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.76 E-value=1e-18 Score=198.92 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 4 KIRVQALIDQLGLR-NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+++++++++.+||. +..++.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .|.
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~-----LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~ 596 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI 596 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGG-----CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred HHHHHHHHHHcCCChhhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence 46789999999994 677888876 999999999999999999999999999999999999999999998 589
Q ss_pred EEEEEeCCCchHHHhhcCeEEEeeCCcEE-EecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFLSRGQTV-YSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l~~G~~v-~~G~~~~~ 119 (525)
|||+++|++. .+.++||++++|++|+++ +.|+++++
T Consensus 597 tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 597 TSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999976 688899999999999997 68987654
No 56
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=1e-18 Score=197.08 Aligned_cols=109 Identities=23% Similarity=0.413 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHD---PILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~---p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
.+++.++|+.+||... .++.+++ |||||||||.||++|+.+ |+||||||||+|||+.+..++.+.|+++++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~ 781 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3467899999999873 4666654 999999999999999996 799999999999999999999999999998
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
+|.|||+++|++. .+ +.||+|++| ++|++++.|+++++
T Consensus 782 ~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 782 AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 9999999999976 46 789999999 68999999988665
No 57
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=2.5e-18 Score=155.27 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeE
Q 037973 29 HRGVSGGERRRVSIG------IDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM 102 (525)
Q Consensus 29 ~~glSgGerkRv~ia------~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v 102 (525)
++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 456999999999886 889999999999999999999999999999999987899999999997 367899999
Q ss_pred EEee--CCc
Q 037973 103 IFLS--RGQ 109 (525)
Q Consensus 103 ~~l~--~G~ 109 (525)
++|+ +|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 9994 553
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=2.1e-18 Score=194.87 Aligned_cols=108 Identities=30% Similarity=0.437 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.++++.+||.. ..++.+++ |||||||||.||++|+.+| ++|||||||+|||+.++..+++.|++++++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 35678999999987 56777665 9999999999999999865 999999999999999999999999999989
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. .+ +.||+|++| ++|++++.|+++++
T Consensus 898 G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 898 GDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 999999999976 34 689999999 68999999998665
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=8.8e-19 Score=208.29 Aligned_cols=113 Identities=28% Similarity=0.465 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++.+.++++..++.+ -.||.||+.+ ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 456788888887754 3688888643 45999999999999999999999999999999999999999999988
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+. +|+|+|+++|.++ ....||+|++|++|+++++|+++++.
T Consensus 1263 ~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp TS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred Hc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 64 5899999999987 35579999999999999999998764
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=2.7e-18 Score=194.01 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++|+ +.|+.+||... .|+.+++ ||||||||+.||++|.++| ++|+|||||+|||+.....+.+.|++|.+.
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~ 555 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL 555 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT
T ss_pred HHHH-HHhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC
Confidence 3455 45899999865 6888776 9999999999999999985 999999999999999999999999999888
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCChh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNLP 120 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~~ 120 (525)
|.|||+++|++. . .+.+|+|++| ++|++++.|+++++.
T Consensus 556 G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 556 GNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp TCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999974 4 4579999999 789999999998763
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=2e-18 Score=196.23 Aligned_cols=107 Identities=26% Similarity=0.428 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 037973 6 RVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI--LLFLDEPTSGLDSTSAYMVVKVLQRIAQSGS 82 (525)
Q Consensus 6 ~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~~g~ 82 (525)
+..+.|..+||.+. .++.+++ |||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~-----LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATT-----LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGG-----CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHcCCccccccCCccc-----CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 34567888999764 5777765 99999999999999999887 9999999999999999999999999998899
Q ss_pred EEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 83 IVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 83 tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|||+++|++. .+ ..+|+|+.| ++|++++.|+++++
T Consensus 518 TvivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 518 TVIVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp EEEEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred EEEEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 9999999974 34 569999999 89999999998765
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=3.2e-18 Score=194.07 Aligned_cols=108 Identities=27% Similarity=0.403 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 5 IRVQALIDQLGLRN-AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDP---ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p---~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
+++.++++.+||.. ..++.+++ |||||||||.||++|+.+| ++|||||||+|||+.+...+++.|++++++
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 915 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPT-----LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGG-----SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCcccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34578899999986 56666655 9999999999999999865 999999999999999999999999999989
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. .+ +.||+|++| ++|++++.|+++++
T Consensus 916 G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 916 GNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHH
Confidence 999999999976 34 689999999 68999999998665
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=4.5e-18 Score=202.22 Aligned_cols=113 Identities=31% Similarity=0.466 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLR-------NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 4 ~~~v~~~l~~l~L~-------~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
++++.++++..++. +-.||.||+.+ ..||||||||++||||+.++|+||+||||||+||+++...+.+.|++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 46777777777654 34678888754 45999999999999999999999999999999999999999999998
Q ss_pred HHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 77 IAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 77 l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
+. +|+|+|+++|+++ ..+.+|+|++|++|++++.|+.+++.
T Consensus 600 ~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 600 AA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp HH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred Hh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 76 5899999999987 46789999999999999999987764
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=6.5e-18 Score=191.54 Aligned_cols=108 Identities=25% Similarity=0.427 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 4 KIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHD--PILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~--p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
++++ +.|+.+||... .|+.+++ ||||||||+.||++|..+ |++|+|||||+|||+.....+.+.|++|.+.
T Consensus 499 ~~Rl-~~L~~vGL~~l~l~r~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~ 572 (993)
T 2ygr_A 499 RSRL-GFLLDVGLEYLSLSRAAAT-----LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL 572 (993)
T ss_dssp HHHH-HHHHHHTGGGSCTTCBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHhhCCCCccccCCCccc-----CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc
Confidence 3455 35788999865 6877776 999999999999999999 5999999999999999999999999999989
Q ss_pred CCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCCh
Q 037973 81 GSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNL 119 (525)
Q Consensus 81 g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~ 119 (525)
|.|||+++|++. . .+.+|+|++| ++|++++.|+++++
T Consensus 573 G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~ 615 (993)
T 2ygr_A 573 GNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDEL 615 (993)
T ss_dssp TCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHHH
T ss_pred CCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHHh
Confidence 999999999974 3 4579999999 68999999998765
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.1e-17 Score=188.71 Aligned_cols=110 Identities=22% Similarity=0.424 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 3 KKIRVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
..++++ .++.+||.+. .++.+.+ |||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|.+
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~t-----LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPT-----LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGG-----SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCc-----CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 345565 6889999865 6777766 9999999999999999999 59999999999999999999999999998
Q ss_pred cCCEEEEEeCCCchHHHhhcCeEEEe------eCCcEEEecCCCChh
Q 037973 80 SGSIVIMSIHQPSYRILGLLDRMIFL------SRGQTVYSGSPMNLP 120 (525)
Q Consensus 80 ~g~tvi~~~H~~~~~v~~~~d~v~~l------~~G~~v~~G~~~~~~ 120 (525)
.|.|||+++|++. +.+.+|+|+.| .+|++++.|+++++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999999999974 56789999999 789999999987763
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.72 E-value=4.1e-18 Score=193.86 Aligned_cols=103 Identities=25% Similarity=0.365 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCcc-c-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 4 KIRVQALIDQLGLRN-A-AKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~-~-~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
+++++++++.+||.+ . .++.+++ ||||||||+.||++|+.+|++|+|||||+|||+.+...+.+.|+++ +
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~-----LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRG-----LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGG-----CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCccc-----cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 457889999999975 3 5777665 9999999999999999999999999999999999999999888765 6
Q ss_pred CEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecC
Q 037973 82 SIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 82 ~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
.|||+++|++. .+.++||++++|++|+++..|+
T Consensus 949 ~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 79999999976 5888999999999999988775
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=8e-18 Score=199.58 Aligned_cols=111 Identities=26% Similarity=0.443 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRN-------AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+.+.+.++..++.+ -.|+.+|+ ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++.
T Consensus 1139 ~~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp HHHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 45566666665543 45677775 34569999999999999999999999999999999999999999999885
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCCh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~ 119 (525)
.+|+|+|+++|+++. + ..||||++|++|++++.|+++++
T Consensus 1218 -~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1218 -REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp -SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHH
T ss_pred -CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 468999999999974 5 55999999999999999998665
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.72 E-value=9.7e-18 Score=173.73 Aligned_cols=82 Identities=27% Similarity=0.446 Sum_probs=75.8
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeE
Q 037973 29 HRGVSGGERRRVSIGIDII------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM 102 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v 102 (525)
+..||||||||++||++|+ .+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3469999999999999999 699999999999999999999999999999888999999999985 36789999
Q ss_pred EEeeCCcEEE
Q 037973 103 IFLSRGQTVY 112 (525)
Q Consensus 103 ~~l~~G~~v~ 112 (525)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.71 E-value=1.5e-17 Score=197.17 Aligned_cols=112 Identities=25% Similarity=0.398 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLR-------NAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 5 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
+++++.++..++. +-.|+.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 4555555555543 345677765 34569999999999999999999999999999999999999999999886
Q ss_pred HHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChh
Q 037973 78 AQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLP 120 (525)
Q Consensus 78 ~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~ 120 (525)
. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|+++++.
T Consensus 573 ~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 573 R-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp H-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHH
T ss_pred c-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 5 5899999999986 45 459999999999999999987763
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.64 E-value=7.6e-16 Score=161.82 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe----
Q 037973 32 VSGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL---- 105 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l---- 105 (525)
+|||||||+.||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.|||++||++. +.+.||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 6899999999973 56889999999
Q ss_pred eCCcEEEec
Q 037973 106 SRGQTVYSG 114 (525)
Q Consensus 106 ~~G~~v~~G 114 (525)
.+|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899987654
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=9.1e-15 Score=148.79 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeE--E
Q 037973 30 RGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM--I 103 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v--~ 103 (525)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEE
Confidence 459999999999999997 5789999999999999999999999999985 588999999996 367889986 7
Q ss_pred EeeCCc-EEEecCCCC
Q 037973 104 FLSRGQ-TVYSGSPMN 118 (525)
Q Consensus 104 ~l~~G~-~v~~G~~~~ 118 (525)
+|.+|+ .+.....++
T Consensus 295 ~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 295 TMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EESSSCEEEEECCC--
T ss_pred EEeCCEEEEEEEEcch
Confidence 888875 444455544
No 72
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.54 E-value=8.4e-15 Score=150.15 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=68.8
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeE
Q 037973 29 HRGVSGGERR------RVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRM 102 (525)
Q Consensus 29 ~~glSgGerk------Rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v 102 (525)
++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|+|||+++|++ ++.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 3569999999 56777888889999999999999999999999999999988899999999995 478899999
Q ss_pred EEee
Q 037973 103 IFLS 106 (525)
Q Consensus 103 ~~l~ 106 (525)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 73
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.3e-14 Score=134.32 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 29 HRGVSGGERRRVSIGIDIIH----DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~----~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
+..||||||||++||++++. .|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45699999999999999975 4699999999999999999999999999875 46789999995 46789999986
Q ss_pred ee--CCc
Q 037973 105 LS--RGQ 109 (525)
Q Consensus 105 l~--~G~ 109 (525)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 553
No 74
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.53 E-value=9.7e-15 Score=158.07 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=71.3
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 29 HRGV-SGGERRRVSIGIDIIHDP--ILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 29 ~~gl-SgGerkRv~ia~~l~~~p--~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
...| |||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+|. +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3557 999999999999999999 99999999999999999999999999987 899999999975 45679999999
Q ss_pred eCCc
Q 037973 106 SRGQ 109 (525)
Q Consensus 106 ~~G~ 109 (525)
++|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7653
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.51 E-value=2.4e-14 Score=147.50 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=75.3
Q ss_pred CC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhh
Q 037973 29 HR-GVSGGERRRVSIGIDII---------HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 29 ~~-glSgGerkRv~ia~~l~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~ 98 (525)
++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. +|+|+++|. . . .
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~ 333 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---G 333 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---T
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---c
Confidence 44 69999999999999999 8999999999999999999999999998874 688889984 4 2 7
Q ss_pred cCeEEEeeCCcEEEecCCCCh
Q 037973 99 LDRMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 99 ~d~v~~l~~G~~v~~G~~~~~ 119 (525)
+|+++++++|+++..|+++++
T Consensus 334 ~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp CSEEEEEETTEEEECCCTTTS
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998775
No 76
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.6e-15 Score=159.71 Aligned_cols=101 Identities=10% Similarity=0.141 Sum_probs=80.7
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHH
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGID--IIHDPIL----LFLDE-PTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~--l~~~p~i----lllDE-PtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+.++++.+||++..+ . +.||||||||+++|++ |+.+|++ |+||| ||++||+. ...+.+++++
T Consensus 218 ~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred HHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence 445566677766554 2 4599999999999999 9999999 99999 99999998 4444444433
Q ss_pred cCCEEEEEeCCCch-----HHHhhcCe-----EEEee-CCcEEEecCCCCh
Q 037973 80 SGSIVIMSIHQPSY-----RILGLLDR-----MIFLS-RGQTVYSGSPMNL 119 (525)
Q Consensus 80 ~g~tvi~~~H~~~~-----~v~~~~d~-----v~~l~-~G~~v~~G~~~~~ 119 (525)
.+.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|+++++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 37889999999761 45689999 99999 99999 8887554
No 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.42 E-value=4.4e-13 Score=139.04 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCccc-------ccccccC----CCCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHH
Q 037973 5 IRVQALIDQLGLRNA-------AKTVIGD----EGHRGVSGGERRRV------SIGIDIIHD-PILLFLDEPTSGLDSTS 66 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~-------~~~~vg~----~~~~glSgGerkRv------~ia~~l~~~-p~illlDEPtsgLD~~~ 66 (525)
+.+++.++.+++.+. .+..+.+ ..++.+|||||||+ ++|++++.+ |++|+|||||+|||+..
T Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 346677888877551 1111111 22356999999988 556888889 99999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 67 AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 67 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+..+.+.|+++. ++.+||+++|++. +...+|+++++++
T Consensus 323 ~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~~~l~k 360 (371)
T 3auy_A 323 RAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVIINVKK 360 (371)
T ss_dssp HHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEEEEEEE
T ss_pred HHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEEEEEEe
Confidence 999999999974 3568999999974 6789999999974
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.37 E-value=5.9e-13 Score=123.82 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CCchHHHhhcC
Q 037973 30 RGVSGGERRRVSIGID-----IIHDPILLFLDE--PTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH--QPSYRILGLLD 100 (525)
Q Consensus 30 ~glSgGerkRv~ia~~-----l~~~p~illlDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H--~~~~~v~~~~d 100 (525)
..||||||||++||++ ++.+|++++||| ||++||+.....+.+.+++ .+.|+|+++| |....+.+++|
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~ 151 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRR 151 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHT
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHh
Confidence 4599999999999996 999999999999 9999999999999888876 4677888887 34556788888
Q ss_pred eEEEeeCCcEEE
Q 037973 101 RMIFLSRGQTVY 112 (525)
Q Consensus 101 ~v~~l~~G~~v~ 112 (525)
+ .+|+++.
T Consensus 152 r----~~~~i~~ 159 (178)
T 1ye8_A 152 L----PGAVLIE 159 (178)
T ss_dssp C----TTCEEEE
T ss_pred c----CCcEEEE
Confidence 7 5566654
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.36 E-value=1.5e-13 Score=126.82 Aligned_cols=61 Identities=10% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST----------------SAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~----------------~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
.|||||||++||++++.+|++++|||||+|||+. ...++.+.|++++++|.|+|+++|++.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 6999999999999999999999999999999999 668999999999888999999999976
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.32 E-value=3.6e-12 Score=134.69 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEe
Q 037973 30 RGVSGGERRRVSIGIDII----HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFL 105 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~----~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l 105 (525)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|+++|++ ...+.+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 349999999999999999 57999999999999999999999999999876688999999995 467889999998
Q ss_pred eC
Q 037973 106 SR 107 (525)
Q Consensus 106 ~~ 107 (525)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.14 E-value=1.4e-12 Score=124.35 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 35 GERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 35 GerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
|||||++||++|+.+|++|+|||||+| ++..+.+.|+++ ++|+||| ++|++.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999999999999999999999999999 899999999998 6789999 999976
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.13 E-value=2.6e-11 Score=131.42 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=73.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCEEEEEeCCCc---------hH
Q 037973 29 HRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDST-----SAYMVVKVLQRIAQSGSIVIMSIHQPS---------YR 94 (525)
Q Consensus 29 ~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~-----~~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~ 94 (525)
+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+++.|.|||+++|++. ..
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 4569999999999999999999999999 99999999 999999999999888999999999981 35
Q ss_pred HHhhcCeEEEeeCCc
Q 037973 95 ILGLLDRMIFLSRGQ 109 (525)
Q Consensus 95 v~~~~d~v~~l~~G~ 109 (525)
+..++|+|++|.+|+
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 778999999999886
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=3.5e-11 Score=125.92 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGG--ERRRVSIGIDIIH----------DPILLFLDEPTSGLDSTSAYMVVK 72 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgG--erkRv~ia~~l~~----------~p~illlDEPtsgLD~~~~~~i~~ 72 (525)
.+++++++.+++.+..... . +||| ||||+.||++|+. +|++++|||||+|||+.++.++++
T Consensus 135 ~~~~~~L~~~~L~~~~~~~------~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFI------I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEE------E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeE------E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 3578899999997653322 1 8999 9999999999999 999999999999999999999999
Q ss_pred HHHHHH-----HcC----CEEEEEeCCCch-HHHhhcCeEE
Q 037973 73 VLQRIA-----QSG----SIVIMSIHQPSY-RILGLLDRMI 103 (525)
Q Consensus 73 ~l~~l~-----~~g----~tvi~~~H~~~~-~v~~~~d~v~ 103 (525)
.|+++. +.| .+|++++|+... .+.+++|+|.
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999985 333 568889998763 3777788764
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.94 E-value=6.6e-10 Score=126.95 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=76.5
Q ss_pred CCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEeCCCchHHHhhcCeEE
Q 037973 28 GHRGVSGGERRRVSIGIDI--IHDPILLFLDEPTSGLDSTSAYMV-VKVLQRIAQ-SGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l--~~~p~illlDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
..+++|+|++++..++.++ +++|+++||||||+|||+.....+ ..+++.+++ .|.++|++||++ ++.+++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 3567999999999999999 999999999999999999999888 677788876 489999999995 4678999999
Q ss_pred EeeCCcEEEecCCCCh
Q 037973 104 FLSRGQTVYSGSPMNL 119 (525)
Q Consensus 104 ~l~~G~~v~~G~~~~~ 119 (525)
.+.+|++...++++++
T Consensus 796 ~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 796 TVNNLHVTALTTEETL 811 (934)
T ss_dssp TEEEEEEEEEEETTEE
T ss_pred eeEeeEEEEEecCCcE
Confidence 9999999998887765
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.89 E-value=3e-09 Score=106.29 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEeCCCc-h------
Q 037973 30 RGVSGGE-RRRVSIGIDIIHDPILLFLDEPTS---G---LDS-TSAYMVVKVLQRIAQS-GSIVIMSIHQPS-Y------ 93 (525)
Q Consensus 30 ~glSgGe-rkRv~ia~~l~~~p~illlDEPts---g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~-~------ 93 (525)
..+|.+| +||+. ++++..+|+++++||||+ + +|. ....++++.|++++++ |.|||+++|+.. .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3488999 66776 999999999999999999 5 565 6778899999999875 999999999962 2
Q ss_pred --------------HHHhhcCeEEEeeCCcE
Q 037973 94 --------------RILGLLDRMIFLSRGQT 110 (525)
Q Consensus 94 --------------~v~~~~d~v~~l~~G~~ 110 (525)
.+.++||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 57889999999999875
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.69 E-value=1.3e-10 Score=110.20 Aligned_cols=62 Identities=8% Similarity=-0.050 Sum_probs=54.6
Q ss_pred HHhhCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 45 DIIHDPILLFLDEPTSGL----DSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 45 ~l~~~p~illlDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+|+.+|++++|||||+|+ |+..+.++.+.++++++ .|.|+|+++|++. ++.++||+|++|.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 889999999999999998 78899999999999975 5899999999986 79999999999854
No 87
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.65 E-value=3.8e-09 Score=107.59 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCcE
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~ 110 (525)
|||+||++|+++|..+|+++++||||+ .++.+.|+.+.+.+.|+|+++|+++ ..+.+||+++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 899999999999999999999999998 2456778877654457999999986 6778999999988854
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.64 E-value=2.5e-08 Score=115.35 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSA-YMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+|++++ +++++++++++|++++||||++|+|+... ..+...|+.++++ |.++|++||++. .+...+|++.++ +|+
T Consensus 852 f~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 556555 59999999999999999999999999985 5578999999876 899999999976 567789998886 488
Q ss_pred EE--EecCCC
Q 037973 110 TV--YSGSPM 117 (525)
Q Consensus 110 ~v--~~G~~~ 117 (525)
+. +.|++.
T Consensus 929 ~~~~~~~~~~ 938 (1022)
T 2o8b_B 929 MACMVENECE 938 (1022)
T ss_dssp EEEC------
T ss_pred EEEEEecCcc
Confidence 77 556543
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.63 E-value=2.4e-08 Score=113.87 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCEEEEEeCCCchHHHhhcCeE
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVV-KVLQRIAQ-SGSIVIMSIHQPSYRILGLLDRM 102 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~-~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d~v 102 (525)
..+|+|++|++.|+++ +++|+++||||||+|||+.....+. .+++.+++ .|.|+|++||++. +.+++|+.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 4578999999999998 8999999999999999999999998 77888876 5999999999964 55667654
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.61 E-value=5.9e-08 Score=92.34 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEeCCCc-------hHHHhhc
Q 037973 32 VSGGERRRVSIGIDIIHDPI--LLFLDEPTSGL--DSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPS-------YRILGLL 99 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~--illlDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~-------~~v~~~~ 99 (525)
.|.++.++...+.....+|+ ++++||||+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 48999888888877778999 99999999877 99999999999999976 4889999999983 3488899
Q ss_pred CeEEEeeCC
Q 037973 100 DRMIFLSRG 108 (525)
Q Consensus 100 d~v~~l~~G 108 (525)
|+|++|++.
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999864
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.59 E-value=3.3e-10 Score=113.81 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 85 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi 85 (525)
.+.+.++.+ |.+-.| | ..|||||||| |++|+.+|+||| |++||+.+...+..
T Consensus 183 ~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------------- 234 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------------- 234 (305)
T ss_dssp HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------------
T ss_pred HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------
Confidence 345566664 444334 2 4699999999 999999999999 99999999888752
Q ss_pred EEeCCCchHHHhhcCeEEEeeCCcEEEecCCCChhhHH
Q 037973 86 MSIHQPSYRILGLLDRMIFLSRGQTVYSGSPMNLPHFF 123 (525)
Q Consensus 86 ~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~~~~~~~ 123 (525)
.+|++. ..+.+|+| +|++|++++.|+++++..++
T Consensus 235 -ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 235 -LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp -GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred -HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 178865 46789999 99999999999887764433
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.58 E-value=7.4e-08 Score=95.39 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHH-c
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTS--GLDSTSA---YMVVKVLQRIAQ-S 80 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPts--gLD~~~~---~~i~~~l~~l~~-~ 80 (525)
++++++.+++.+..+..+ ..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .
T Consensus 99 ~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 445677777776655544 34999998876 57888999999999999 9998544 888999999975 5
Q ss_pred CCEEEEEeCCCc
Q 037973 81 GSIVIMSIHQPS 92 (525)
Q Consensus 81 g~tvi~~~H~~~ 92 (525)
|.|||+++|+..
T Consensus 171 g~tvi~i~H~~~ 182 (279)
T 1nlf_A 171 GCSIVFLHHASK 182 (279)
T ss_dssp CCEEEEEEEC--
T ss_pred CCEEEEEecCCC
Confidence 999999999965
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.50 E-value=9.1e-08 Score=92.30 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHcCCEEEEEeCCCchHH---------Hhhc
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEPTSGLD-----STSAYMVVKVLQRIAQSGSIVIMSIHQPSYRI---------LGLL 99 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEPtsgLD-----~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v---------~~~~ 99 (525)
.++..+......-..+|+++++||||++|| +..+..+.++++.++++|.|||+++|++.. + ..+|
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEe
Confidence 344444444444468999999999999997 666777999999998889999999999874 4 5788
Q ss_pred -CeEEEeeC
Q 037973 100 -DRMIFLSR 107 (525)
Q Consensus 100 -d~v~~l~~ 107 (525)
|+|++|++
T Consensus 199 aD~vi~l~~ 207 (251)
T 2ehv_A 199 ARGVIVLDL 207 (251)
T ss_dssp CSEEEEEEE
T ss_pred eeEEEEEee
Confidence 99999963
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=5.9e-07 Score=84.78 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=61.1
Q ss_pred CCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHHc-CCEEEEEeCCCch------
Q 037973 32 VSGGE--RRRVSIGIDIIHD-PILLFLDEPTSGLDSTS--------AYMVVKVLQRIAQS-GSIVIMSIHQPSY------ 93 (525)
Q Consensus 32 lSgGe--rkRv~ia~~l~~~-p~illlDEPtsgLD~~~--------~~~i~~~l~~l~~~-g~tvi~~~H~~~~------ 93 (525)
.++++ ++++..+++++.+ |+++++||||+.+|+.. ..++++.|++++++ |.|||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45554 5678888899886 99999999999999733 35567778888765 8899999998652
Q ss_pred ------HHHhhcCeEEEeeCC
Q 037973 94 ------RILGLLDRMIFLSRG 108 (525)
Q Consensus 94 ------~v~~~~d~v~~l~~G 108 (525)
.+.+.+|.+++|++.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 477899999999865
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.36 E-value=5.1e-08 Score=105.49 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHH-hhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH--------HHhhcCeEE
Q 037973 38 RRVSIGIDI-IHDPILLFLDEPTS-----GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR--------ILGLLDRMI 103 (525)
Q Consensus 38 kRv~ia~~l-~~~p~illlDEPts-----gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~--------v~~~~d~v~ 103 (525)
+.-.+..+| -.+|+++++||||+ +||+..+.++.++++.++++|.|||+++|++... ...+||+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 344455555 36899999999998 5699999999999999988899999999998742 345699999
Q ss_pred EeeCCc
Q 037973 104 FLSRGQ 109 (525)
Q Consensus 104 ~l~~G~ 109 (525)
+|++|+
T Consensus 206 ~L~~~~ 211 (525)
T 1tf7_A 206 ILRNVL 211 (525)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999854
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.33 E-value=7.6e-08 Score=96.67 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=61.1
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeC
Q 037973 13 QLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI--LLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIH 89 (525)
Q Consensus 13 ~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H 89 (525)
.+|+.+..+..++ .|| |||+.||++++.+|+ +|+|| ||+|||+..+ ++++.+ .|.|+|++||
T Consensus 191 t~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 191 TSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 255 (302)
T ss_dssp CCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred cCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence 3444444444443 388 999999999999999 99999 9999998755 345554 5899999999
Q ss_pred CCc--------hHHHhhcCeEEEeeCCcEE
Q 037973 90 QPS--------YRILGLLDRMIFLSRGQTV 111 (525)
Q Consensus 90 ~~~--------~~v~~~~d~v~~l~~G~~v 111 (525)
... +.+....+.|.++..|+.+
T Consensus 256 lD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 256 LDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp CSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 432 2333456778888888653
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.28 E-value=4.9e-07 Score=101.50 Aligned_cols=81 Identities=19% Similarity=0.143 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 28 GHRGVSGGERRRVSIGIDI--IHDPILLFLDEP---TSGLDSTSA-YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 28 ~~~glSgGerkRv~ia~~l--~~~p~illlDEP---tsgLD~~~~-~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
...++|+|+++++.++.++ +++|++++|||| |++||..+. ..+++.|++ .|.++|++||++. ..+++
T Consensus 632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~-- 704 (765)
T 1ewq_A 632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG-- 704 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--
T ss_pred HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--
Confidence 3457999999999999999 999999999999 999998875 578888766 5899999999964 45554
Q ss_pred EEEeeCCcEEEecC
Q 037973 102 MIFLSRGQTVYSGS 115 (525)
Q Consensus 102 v~~l~~G~~v~~G~ 115 (525)
.--+.++++.....
T Consensus 705 ~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 705 LPRLKNLHVAAREE 718 (765)
T ss_dssp CTTEEEEEEEEECC
T ss_pred hhcceEEEEEEEEc
Confidence 22234455554443
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.22 E-value=1e-06 Score=83.73 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCccc--c-cccccCCCCCCCCHHHH-HHHHHHHHHhh-------CCCEEEEeCCCCCCCHHH------
Q 037973 4 KIRVQALIDQLGLRNA--A-KTVIGDEGHRGVSGGER-RRVSIGIDIIH-------DPILLFLDEPTSGLDSTS------ 66 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~--~-~~~vg~~~~~glSgGer-kRv~ia~~l~~-------~p~illlDEPtsgLD~~~------ 66 (525)
.+++..+.+..++... . +-.+ .+..+++++ +.+..+.+++. +|+++++||||+++|+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYV----ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEE----EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEE----EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 3466677777777531 1 1111 123455554 44677777776 999999999999999842
Q ss_pred ------HHHHHHHHHHHHH-cCCEEEEEeCCCch---HHHhhcCeEEEeeCCc
Q 037973 67 ------AYMVVKVLQRIAQ-SGSIVIMSIHQPSY---RILGLLDRMIFLSRGQ 109 (525)
Q Consensus 67 ------~~~i~~~l~~l~~-~g~tvi~~~H~~~~---~v~~~~d~v~~l~~G~ 109 (525)
..++++.|+++++ .|.|||+++|.... .+.+.+|++++|++|+
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3478888888876 49999999995431 3778899999999863
No 99
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.18 E-value=4e-08 Score=100.59 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEeCCCchHHHhhcCeE
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ--SGS-----IVIMSIHQPSYRILGLLDRM 102 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~~~H~~~~~v~~~~d~v 102 (525)
..+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ +|. ||++++|+++ ..+||++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4589999 899999 678876 999999999999999999874 477 8999999987 4579999
Q ss_pred EEeeCCcEEEecCCCCh
Q 037973 103 IFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 103 ~~l~~G~~v~~G~~~~~ 119 (525)
..+.+|+++..|++.+.
T Consensus 237 ~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 RSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHCSEEEEBCHHHHTT
T ss_pred EEeeCcEEEEeCCHHHc
Confidence 99999999999876554
No 100
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.18 E-value=1.3e-07 Score=93.54 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=50.5
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 17 RNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 17 ~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
.+..+...+. ||||||||+.+|++++. ++++|||+.|||+.. .+.++.+.+. .++|+++|..
T Consensus 89 ~~~~~~~~~~-----LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 89 EQYEKFLKEE-----VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHHHH-----SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTG
T ss_pred HHHHhhhHHh-----cCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecc
Confidence 4455666554 99999999999999775 999999999999987 5666777666 8899998874
No 101
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.17 E-value=4e-07 Score=93.41 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=59.7
Q ss_pred cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Q 037973 14 LGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI--LLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQ 90 (525)
Q Consensus 14 l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~--illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~ 90 (525)
+|+.+..+..++ .|| |||+.||++++.+|+ +|+|| ||+|||+..+. +++.+ .|.|+|++||.
T Consensus 249 ~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 249 SGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp CCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred cCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 444444444443 388 999999999999999 99999 99999987653 45554 48999999994
Q ss_pred Cc--------hHHHhhcCeEEEeeCCcE
Q 037973 91 PS--------YRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 91 ~~--------~~v~~~~d~v~~l~~G~~ 110 (525)
.. +.+....+.|.++..|+.
T Consensus 314 D~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 314 DGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp TTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 21 123345667888887765
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.16 E-value=7.7e-07 Score=100.44 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMV-VKVLQRIAQ-SGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+|++++ ++..+...+++|++++||||++|+|+.....+ ...++.+++ .|.++|++||++. +.+++|++..+.+|+
T Consensus 670 f~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 670 FMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVH 746 (800)
T ss_dssp CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEE
T ss_pred hhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEE
Confidence 455554 45555566899999999999999999887775 788888887 4999999999974 567899988888888
Q ss_pred EEEecCCCC
Q 037973 110 TVYSGSPMN 118 (525)
Q Consensus 110 ~v~~G~~~~ 118 (525)
+.+....++
T Consensus 747 ~~~~~~~~~ 755 (800)
T 1wb9_A 747 LDALEHGDT 755 (800)
T ss_dssp EEEEEETTE
T ss_pred EEEEEcCCc
Confidence 876654433
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.16 E-value=1.2e-06 Score=89.60 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCccc--c-cccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCCCHHH--------
Q 037973 5 IRVQALIDQLGLRNA--A-KTVIGDEGHRGVSGGERRRVSIGIDII-------HDPILLFLDEPTSGLDSTS-------- 66 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~--~-~~~vg~~~~~glSgGerkRv~ia~~l~-------~~p~illlDEPtsgLD~~~-------- 66 (525)
+++..+.+..++... . +-.+... --|+++++++.++.+++ .+|+++++||||+++|+..
T Consensus 180 ~~i~~i~q~~~~~~~~v~~ni~~~~~---~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~ 256 (349)
T 1pzn_A 180 ERIREIAQNRGLDPDEVLKHIYVARA---FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAE 256 (349)
T ss_dssp HHHHHHHHTTTCCHHHHGGGEEEEEC---CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCEEEEec---CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHH
Confidence 455666666666421 1 1112111 12688999999999999 6899999999999999852
Q ss_pred ----HHHHHHHHHHHHHc-CCEEEEEeCCCchHHHhhcCeEEEeeCCcEEEecCCC
Q 037973 67 ----AYMVVKVLQRIAQS-GSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPM 117 (525)
Q Consensus 67 ----~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v~~~~d~v~~l~~G~~v~~G~~~ 117 (525)
..++++.|++++++ |.|||+++|... .....+++......|+++.++...
T Consensus 257 r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 257 RQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCcE
Confidence 46677778888764 889999999865 455556667777788877766543
No 104
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.05 E-value=1.1e-07 Score=100.36 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEeCCCchHHHhhcC
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ---S-GS-----IVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~~H~~~~~v~~~~d 100 (525)
..+|+|| ||++|| +.+|++ |+|||+.....+.++++++.+ + |+ ||++++|+++ ..++|
T Consensus 257 ~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad 323 (438)
T 2dpy_A 257 TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIAD 323 (438)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHH
T ss_pred HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhc
Confidence 3489999 999999 888887 999999999999999999876 3 64 8999999987 46799
Q ss_pred eEEEeeCCcEEEecCCCCh
Q 037973 101 RMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 101 ~v~~l~~G~~v~~G~~~~~ 119 (525)
++++|.+|+++..|++.+.
T Consensus 324 ~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 324 SARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHSSEEEEECHHHHHT
T ss_pred eEEEEeCcEEEEeCCHHHc
Confidence 9999999999999876443
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.04 E-value=2.9e-08 Score=100.16 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDS 64 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~ 64 (525)
.+++.+.++.++ .+..++.+.. +||||+||+.+|++++.+|+|||+|||+..+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPV-----YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEE-----EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCccc-----CChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 356788888888 5555566554 999999999999999999999999999999986
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.02 E-value=3.2e-06 Score=83.03 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 38 RRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 38 kRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
-|++|+++|..+|+++++|||| |+.+...++ +. +..|++|++++|+++ +.+.+|+++.|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 3899999999999999999999 988866544 33 457999999999975 5678999888754
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.92 E-value=7.7e-06 Score=76.43 Aligned_cols=73 Identities=10% Similarity=-0.044 Sum_probs=56.5
Q ss_pred HHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 037973 6 RVQALIDQLGLRNA-AKTVIGDEGHRGVSGGERRR-VSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI 83 (525)
Q Consensus 6 ~v~~~l~~l~L~~~-~~~~vg~~~~~glSgGerkR-v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t 83 (525)
++.+.++..++... ..+++. .+|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.++|.+
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 45556666676543 233443 389999999 89999999999999999999999999999999999998776654
No 108
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.91 E-value=4.6e-08 Score=93.48 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSI-----GIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~i-----a~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
..++++++...+. ..+ ..+|||||||+++ +++++.+|++++|||||+++|..+...+.+.+++..+
T Consensus 105 ~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 105 SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3566666654321 112 2489999999999 8899999999999999999999999999998887654
Q ss_pred c-------CCEEEEEeCCCchHHHhhcCeEE
Q 037973 80 S-------GSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 80 ~-------g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
+ +...|+++|++. +.++..|+++
T Consensus 176 ~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 176 ELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 2 233445555533 3444444443
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=6.1e-07 Score=83.81 Aligned_cols=78 Identities=8% Similarity=0.057 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHH-HHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCEEEE---E-eCCCchHHHhhc
Q 037973 30 RGVSGGERRRVS-IGI---DIIHDPILLFLDE--PTSGLDSTSAYMVVKVLQRIAQSGSIVIM---S-IHQPSYRILGLL 99 (525)
Q Consensus 30 ~glSgGerkRv~-ia~---~l~~~p~illlDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~---~-~H~~~~~v~~~~ 99 (525)
..+|||||+++. +.+ |+..+|+++++|| |+..+|... ++.|+++.++.+++|+ + +|+.+ ..+.
T Consensus 82 ~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~ilgti~vsh~~~---~~~v 154 (189)
T 2i3b_A 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTIILGTIPVPKGKP---LALV 154 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCEEEECCCCCSSC---CTTH
T ss_pred EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEEEEEeecCCCCc---hHHH
Confidence 358999998874 343 5789999999999 898898865 4555555555555553 2 27753 3467
Q ss_pred CeEEEeeCCcEEEec
Q 037973 100 DRMIFLSRGQTVYSG 114 (525)
Q Consensus 100 d~v~~l~~G~~v~~G 114 (525)
|+|..+.+|+++.-.
T Consensus 155 d~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 155 EEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHTTCCSEEEECC
T ss_pred HHHeecCCcEEEEeC
Confidence 888888888887643
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.79 E-value=8e-06 Score=83.76 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=48.6
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 41 SIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 41 ~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
+|+++|..+|++|++|||| |..+ .+.+.+.+..|++|++|+|+.+. + +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 9999999999999999999 6555 44445556789999999999873 4 789999988654
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=1.5e-05 Score=73.01 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH
Q 037973 45 DIIHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR 94 (525)
Q Consensus 45 ~l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~ 94 (525)
..+.+|++|+||||++ ++|+..+..+.+++++..++|+++|+++|.+..+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 4466999999999985 9999999999999999888899999999998654
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.73 E-value=4.8e-08 Score=92.22 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGER----RRVSIGIDIIHDPILLFLDEPTSG-------LDSTSAYMVVK 72 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGer----kRv~ia~~l~~~p~illlDEPtsg-------LD~~~~~~i~~ 72 (525)
++++.+.++.+++.+..+.++. .+|+||| ||+.++++++.+|.++++||||++ ||+....++.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCE-----ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 3567788888888766555543 4889964 688899999999999999999999 99999999999
Q ss_pred HHHHH-HHcCCEEEEEeCCCc
Q 037973 73 VLQRI-AQSGSIVIMSIHQPS 92 (525)
Q Consensus 73 ~l~~l-~~~g~tvi~~~H~~~ 92 (525)
.+++. .++|.|++.++|+..
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH
Confidence 99886 456899988899743
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.58 E-value=0.00025 Score=67.56 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHc-CCEEEEEeCCCchH-
Q 037973 32 VSGGERRR-VSIGIDII--HDPILLFLDEPTSGLDST-------S-----AYMVVKVLQRIAQS-GSIVIMSIHQPSYR- 94 (525)
Q Consensus 32 lSgGerkR-v~ia~~l~--~~p~illlDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~~H~~~~~- 94 (525)
.++.+... +.-..+++ .+|+++++|||++.+|+. . ..++++.|++++++ |.|||+++|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 56666433 33333444 489999999999999985 3 45667777777764 89999999965421
Q ss_pred -----------------HHhhcCeEEEeeCCc
Q 037973 95 -----------------ILGLLDRMIFLSRGQ 109 (525)
Q Consensus 95 -----------------v~~~~d~v~~l~~G~ 109 (525)
+..++|.+++|++|+
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ------------------CCTTCEEEEEEECS
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 233799999998753
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.36 E-value=8.5e-07 Score=82.11 Aligned_cols=81 Identities=10% Similarity=0.147 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CchHHHhhcCeEEEe
Q 037973 33 SGGERRRVSIGI------DIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ-PSYRILGLLDRMIFL 105 (525)
Q Consensus 33 SgGerkRv~ia~------~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~-~~~~v~~~~d~v~~l 105 (525)
|+|+++++.++. ++..+|+...+|| |||+..... .+.++.+.+.+.++|.++|+ +. ++.+.+|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--
Confidence 777777777777 8889998888884 899988888 88888886667899999998 76 5889999999
Q ss_pred eCCcEEEecCCCChh
Q 037973 106 SRGQTVYSGSPMNLP 120 (525)
Q Consensus 106 ~~G~~v~~G~~~~~~ 120 (525)
++|+++..|+++-+.
T Consensus 169 ~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HCGGGSCC-------
T ss_pred hCCcEEEeecCCchh
Confidence 999999999886543
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.24 E-value=1.2e-05 Score=80.50 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCc
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
+++|||||||+.+|++++ ++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 459999999988887764 999999998 5999873 666776654 678888999964
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00016 Score=64.44 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=40.6
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEeCCCchHH
Q 037973 45 DIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSI-VIMSIHQPSYRI 95 (525)
Q Consensus 45 ~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~~~v 95 (525)
+++.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+..++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 4567899999999998 6655588999999999888888 888999765433
No 117
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.13 E-value=0.0011 Score=68.88 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCccc--c-cccccCCCCCCCCHH-HHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH----------
Q 037973 4 KIRVQALIDQLGLRNA--A-KTVIGDEGHRGVSGG-ERRRVSIGIDII--HDPILLFLDEPTSGLDSTSA---------- 67 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~--~-~~~vg~~~~~glSgG-erkRv~ia~~l~--~~p~illlDEPtsgLD~~~~---------- 67 (525)
..++.+..+.+|+..- . +..+.. ..++. +.+.+.-+.+++ .+|+++++|||++.+|+...
T Consensus 226 ~~rl~~~a~~~gl~~~~vleni~~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~ 301 (400)
T 3lda_A 226 PVRLVSIAQRFGLDPDDALNNVAYAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQM 301 (400)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEEEEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHH
T ss_pred HHHHHHHHHHcCCChHhHhhcEEEec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHH
Confidence 3456666777887431 1 122222 12322 233344344433 46999999999999997533
Q ss_pred --HHHHHHHHHHHHc-CCEEEEEeCCCc------------------hHHHhhcCeEEEeeCCc
Q 037973 68 --YMVVKVLQRIAQS-GSIVIMSIHQPS------------------YRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 68 --~~i~~~l~~l~~~-g~tvi~~~H~~~------------------~~v~~~~d~v~~l~~G~ 109 (525)
.++++.|++++++ |.|||+++|... ..+.+.+|.+++|.+++
T Consensus 302 ~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 302 HLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 6788899999875 899999999821 23567889999998764
No 118
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.05 E-value=2.4e-05 Score=75.70 Aligned_cols=68 Identities=1% Similarity=0.007 Sum_probs=48.9
Q ss_pred HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 037973 7 VQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM 86 (525)
Q Consensus 7 v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~ 86 (525)
+.+.++.+ .+..+..+. .+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++
T Consensus 99 ~~~~L~~l--~~~~~~~~~-----~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v 160 (245)
T 2jeo_A 99 MHRTLKNI--VEGKTVEVP-----TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFV 160 (245)
T ss_dssp HHHHHHHH--HTTCCEEEC-----CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEE
T ss_pred HHHHHHHH--HCCCCeecc-----cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEE
Confidence 44445443 444555554 499999999987 5778899999999998888763 2222 3789999
Q ss_pred EeCCCc
Q 037973 87 SIHQPS 92 (525)
Q Consensus 87 ~~H~~~ 92 (525)
++|+..
T Consensus 161 ~th~~~ 166 (245)
T 2jeo_A 161 DTDSDV 166 (245)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 999743
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.00 E-value=0.0028 Score=66.86 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHHc-CCEEEEEeC---------C
Q 037973 31 GVSGGERRRVSIGIDII--HDPILLFLDEPTSGLD--------STSAYMVVKVLQRIAQS-GSIVIMSIH---------Q 90 (525)
Q Consensus 31 glSgGerkRv~ia~~l~--~~p~illlDEPtsgLD--------~~~~~~i~~~l~~l~~~-g~tvi~~~H---------~ 90 (525)
++|++|.+ +.++.++ .+|+++++|+++...+ .....++.+.|+.++++ |.+||+++| +
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 58999987 5566666 6899999999998774 23447788889999865 889999999 2
Q ss_pred --Cc-------hHHHhhcCeEEEeeCCcE
Q 037973 91 --PS-------YRILGLLDRMIFLSRGQT 110 (525)
Q Consensus 91 --~~-------~~v~~~~d~v~~l~~G~~ 110 (525)
|. ..+...+|.|++|.+++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 42 147778999999998764
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0016 Score=65.72 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=38.1
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCch
Q 037973 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 46 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
+..+|+++++|||++ ||+.++..+.+.+.+.. .+.++|+++|++..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 567999999999999 99999999999998864 46789999999864
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.67 E-value=0.0015 Score=71.62 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=57.2
Q ss_pred hCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCch------HHHhh-----cCeEEEeeCC
Q 037973 48 HDPILLFLDEP------TSGLDSTSAYMVVKVLQRIAQS--GSIVIMSIHQPSY------RILGL-----LDRMIFLSRG 108 (525)
Q Consensus 48 ~~p~illlDEP------tsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~------~v~~~-----~d~v~~l~~G 108 (525)
.+|+++++||| |+|||+....++.++++++.++ +.++++++|+... .+.+. ...|.++.++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecch
Confidence 46999999999 9999999999999999997554 4567788888651 12222 2458899999
Q ss_pred cEEEecCCCChhhHHH
Q 037973 109 QTVYSGSPMNLPHFFD 124 (525)
Q Consensus 109 ~~v~~G~~~~~~~~~~ 124 (525)
..+..|+..++.+.+.
T Consensus 225 Dlv~~g~~~~~~~~l~ 240 (608)
T 3szr_A 225 DLVDKGTEDKVVDVVR 240 (608)
T ss_dssp GGSSSSSTTCCCCCC-
T ss_pred hhcCcccHHHHHHHHh
Confidence 9888888766554443
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.54 E-value=0.00093 Score=68.74 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEee
Q 037973 39 RVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLS 106 (525)
Q Consensus 39 Rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~ 106 (525)
+.+|+.+|..+|+++++|||+ |..+... .++. +..|.++++|+|..+ +.+.+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 579999999999999999999 7766443 3443 456899999999954 677888887664
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.54 E-value=0.00013 Score=74.74 Aligned_cols=84 Identities=8% Similarity=-0.094 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHh-hCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCchHHHhhcC
Q 037973 32 VSGGERRRVSIGIDII-HDPILLFLDE---PT------SGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 32 lSgGerkRv~ia~~l~-~~p~illlDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~v~~~~d 100 (525)
+|+|+++|..++.++. .+|++++||| |+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~ 336 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQ 336 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHH
Confidence 5677788888877764 5999999999 65 58999999999999999865 47888888864 3 5677888
Q ss_pred eEEEeeCCcEEEecCCCCh
Q 037973 101 RMIFLSRGQTVYSGSPMNL 119 (525)
Q Consensus 101 ~v~~l~~G~~v~~G~~~~~ 119 (525)
++.++++ ++..|+++++
T Consensus 337 ~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 337 VKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHHH--HTSCCCCSSC
T ss_pred HHHHHHH--HhcccchhHh
Confidence 8877765 4445555544
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.32 E-value=0.0011 Score=66.20 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCc
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
++..++||+.||++++.+|+.++| .||+.+..++++.++++.+. |.|+|++||...
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 466779999999999999994444 45555555677778887764 899999999854
No 125
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.013 Score=55.53 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=46.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEeCCCchH-------HHhhcCeEEEeeC
Q 037973 48 HDPILLFLDEPTSGL--DSTSAYMVVKVLQRIAQ-SGSIVIMSIHQPSYR-------ILGLLDRMIFLSR 107 (525)
Q Consensus 48 ~~p~illlDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~-------v~~~~d~v~~l~~ 107 (525)
.+|+++++|||++.+ |+....+.+..|+++++ .|.||++++|..... +.+.+|.|+.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 66556677777777764 588999999987531 4678899999975
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.04 E-value=0.00065 Score=68.29 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
.+|+||+||+..++.++++|+++ ||| .++.+.|++++ .+.+|++++|.+. +...++|
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 48999999998888888899887 888 77888888875 5789999999875 3444454
No 127
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.84 E-value=0.0011 Score=69.31 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 32 VSGGERRRVSIGIDIIHDPI---LLFLDEPT-SGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~---illlDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
++.++++|+.|+++++.+|+ ++++|||| .|||+... +.++.+.. +.++|+++|..
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 45667788889999999999 99999999 69998773 44555543 67777777764
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.81 E-value=0.00015 Score=69.93 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHH-hhCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 31 GVSGGERRRVSIGIDI-IHDPILLFLD----EPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 31 glSgGerkRv~ia~~l-~~~p~illlD----EPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
.+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+++
T Consensus 152 ~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 152 PPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 4888 55 667 8999999999 9999999999999999999987654
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.72 E-value=0.028 Score=57.09 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCEEEEEeCCCch-----
Q 037973 38 RRVSIGIDIIHD--PILLFLDEPTSGL----------DS---TSAYMVVKVLQRI----AQSGSIVIMSIHQPSY----- 93 (525)
Q Consensus 38 kRv~ia~~l~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~~H~~~~----- 93 (525)
+-+.++.+++.+ |+++++||+++.+ |+ ..+..+.+.++++ .+.|.+||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677778754 9999999999998 33 2333445555555 3458999999996431
Q ss_pred ----------HHHhhcCeEEEeeCCcEEEecC
Q 037973 94 ----------RILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 94 ----------~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
.+...+|.++.+.+++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999999887766655
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.68 E-value=0.00051 Score=68.21 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHH
Q 037973 29 HRGVSGGERRRVSIG--IDIIHDPILLFLDEPTSGLDSTS 66 (525)
Q Consensus 29 ~~glSgGerkRv~ia--~~l~~~p~illlDEPtsgLD~~~ 66 (525)
.+.+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 367999999999987 454 899999999999999864
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.64 E-value=0.00038 Score=63.58 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC---CCHHHHHHHHHHH
Q 037973 6 RVQALIDQ-LGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILL-------FLDEPTSG---LDSTSAYMVVKVL 74 (525)
Q Consensus 6 ~v~~~l~~-l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~il-------llDEPtsg---LD~~~~~~i~~~l 74 (525)
.++++++. +. -.|+.+++ ++|||||||++|||+++.+|++. .-|.|..+ +|......+.+.+
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i 156 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI 156 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence 35566665 43 35788876 59999999999999999999873 23555322 3445567777777
Q ss_pred HHHHHcCC
Q 037973 75 QRIAQSGS 82 (525)
Q Consensus 75 ~~l~~~g~ 82 (525)
.+..++|.
T Consensus 157 ~~~~~~~~ 164 (171)
T 2f1r_A 157 LSLLREGG 164 (171)
T ss_dssp HHHHTC--
T ss_pred HHHHhccC
Confidence 66666654
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.34 E-value=0.0051 Score=64.11 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCCchHHHhhcCeEE
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA-QSGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
..+|+|++|++.++++|+..|.++++ +++|...+ ..++.+++.. +.+.+++.++..-...+.++++.+.
T Consensus 251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 35999999999999999999999999 99999877 5555555544 4577766655443445777777654
No 133
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.87 E-value=0.048 Score=57.73 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCCc
Q 037973 34 GGERRRVSIGIDIIHDPILLFLDEP----------TSGLDSTSAYMVVKVLQRIA----QSGSIVIMSIHQPS 92 (525)
Q Consensus 34 gGerkRv~ia~~l~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~~~H~~~ 92 (525)
|++++|-.+..+....|.+||+||+ ++|.|......+.++++.+- +.+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677776666777777663 34667889999974
No 134
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.93 E-value=0.025 Score=63.68 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-eCCCchHHHhhcCeE
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQSGSIVIMS-IHQPSYRILGLLDRM 102 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~-~H~~~~~v~~~~d~v 102 (525)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|++| ||++. .+.+++++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 368999999999999999999999999996 999887777776666554456777775 78754 677777753
No 135
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.89 E-value=0.00022 Score=73.87 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=59.3
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCCchHHHhhcCeEE-EeeCC-cEEEecCCCCh
Q 037973 49 DP--ILLFLDEPTSGLDSTSAYMVVKVLQRI-AQSGSIVIMSIHQPSYRILGLLDRMI-FLSRG-QTVYSGSPMNL 119 (525)
Q Consensus 49 ~p--~illlDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~~~H~~~~~v~~~~d~v~-~l~~G-~~v~~G~~~~~ 119 (525)
+| +++++|||+.++|+......++.++++ ++.|.|++ +|... ++.++||++. +|.+| ++++.|+.++-
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~~ 211 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSNR 211 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCHH
Confidence 78 999999999999999999999999998 77777764 89865 6899999999 99999 99988876543
No 136
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.68 E-value=0.0052 Score=65.61 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=53.2
Q ss_pred HHHHHHcCCcccccc--cccCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHH
Q 037973 8 QALIDQLGLRNAAKT--VIGDEGHRGVSGGERRRV----------SIGIDIIHDPI-LLFLDEPTSGLDSTSAYMVVKVL 74 (525)
Q Consensus 8 ~~~l~~l~L~~~~~~--~vg~~~~~glSgGerkRv----------~ia~~l~~~p~-illlDEPtsgLD~~~~~~i~~~l 74 (525)
.++++..|+.+..+- .+. ..+||||+||. .++.++...|. ++++||++.-+|.. ...+.+.+
T Consensus 247 ~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l 321 (512)
T 2ius_A 247 YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELI 321 (512)
T ss_dssp HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHH
Confidence 367777887664332 121 13678887642 24445667897 78999999988843 35566777
Q ss_pred HHHHHc----CCEEEEEeCCCc
Q 037973 75 QRIAQS----GSIVIMSIHQPS 92 (525)
Q Consensus 75 ~~l~~~----g~tvi~~~H~~~ 92 (525)
.++++. |.++|+++|.|+
T Consensus 322 ~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 322 ARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHhhhCCcEEEEEecCCc
Confidence 766654 668999999998
No 137
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.82 E-value=0.031 Score=58.62 Aligned_cols=70 Identities=11% Similarity=0.222 Sum_probs=53.1
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEE-eeCCcEEEecCCCC
Q 037973 49 DPILLFLDEPTSGLDS-TSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIF-LSRGQTVYSGSPMN 118 (525)
Q Consensus 49 ~p~illlDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~-l~~G~~v~~G~~~~ 118 (525)
+|++|++||+..-.+. .++..+.+.+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 8999999999876664 6788889999998888899999999976544334444443 45677877777753
No 138
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.81 E-value=0.073 Score=50.22 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=40.6
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 43 GIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 43 a~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
..+++..+++++|| ||+.++.++.+.+. ++.+|++++|++. ++.+ |+ +.+|
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG 151 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI-ELDR---RL--RGRG 151 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC
Confidence 45567789999999 99999999999876 5889999999976 3443 33 5666
No 139
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.79 E-value=0.25 Score=52.29 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 29 HRGVSGGERRRVSIGI--DIIH---------------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 29 ~~glSgGerkRv~ia~--~l~~---------------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
.++.||||+|-.-+++ +++. .=.++++||. +.+|...+...+++++++ |--+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 3569999999644444 3332 1257999999 999999999999999976 4445555433
Q ss_pred chHHHhhcCeEEEee
Q 037973 92 SYRILGLLDRMIFLS 106 (525)
Q Consensus 92 ~~~v~~~~d~v~~l~ 106 (525)
.+....|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3566778877765
No 140
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.38 E-value=0.16 Score=47.04 Aligned_cols=72 Identities=21% Similarity=0.110 Sum_probs=53.1
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 37 RRRVSIGIDII--HDPILLFLDEPTS--GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 37 rkRv~ia~~l~--~~p~illlDEPts--gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
++.+.-++..+ .+.++++|||.+. .++-....++++.|++ .-++..||+|...+..++.+++|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34556666777 5679999999976 2333444567777654 22467899999999999999999999987743
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.30 E-value=0.025 Score=51.47 Aligned_cols=52 Identities=8% Similarity=-0.144 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH 89 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 89 (525)
..+|+|++||+.++|++..+|+++ +|+.....+.+.++.+...+..+|.+++
T Consensus 108 ~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 108 HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence 358999999999999999999876 6888887777777665443333444443
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.73 E-value=0.23 Score=49.27 Aligned_cols=45 Identities=9% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 32 VSGGERRRV---SIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 32 lSgGerkRv---~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
.|||+.+++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 166 ~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 689999999 89999999999999999974 3455566666666543
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.47 E-value=0.3 Score=49.16 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEE
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS--GSIVIM 86 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~--g~tvi~ 86 (525)
||++|++|+..|...+.++++++.|+|... ..++...++++.++ |..+|+
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIV 161 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAF 161 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999998654 34677777777654 445444
No 144
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.32 E-value=0.069 Score=54.37 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 33 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 33 SgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+++...|-.|+.++..+|+.+++||++. .++.+.|+.+...+.|++.++|..+ ....+||+..+.+|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 4677789999999999999999999986 3456677777655567899999965 677899999988764
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.17 E-value=0.12 Score=51.10 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEE-EeCCCchHHHhhcCeEEEeeCCcEEEe
Q 037973 39 RVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA---QSGSIVIM-SIHQPSYRILGLLDRMIFLSRGQTVYS 113 (525)
Q Consensus 39 Rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~---~~g~tvi~-~~H~~~~~v~~~~d~v~~l~~G~~v~~ 113 (525)
+..++ .+.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|... ++.+.+|++..+..+.++..
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 44444 45999999999 99999877655555444332 12334444 477754 67778887766666777663
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.14 E-value=0.6 Score=45.92 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 037973 33 SGGERRRVSIGIDIIHDPILLFLDEP-TSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 33 SgGerkRv~ia~~l~~~p~illlDEP-tsgLD~~~~~~i~~~l~~l 77 (525)
.-.+.+|..++.+...+++++++||| +.|+|.....++.+..+.+
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 44566788999888899999999999 9999998888877777665
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.67 E-value=0.49 Score=47.79 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--CCCc
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSI--HQPS 92 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~--H~~~ 92 (525)
..+|+||+|++. +.+...++-++++| +|..|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 357899998876 55555778889999 99999999998888888777654 67777777 7754
No 148
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.96 E-value=0.29 Score=49.66 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 037973 32 VSGGERRRVSIGIDI---IH--DPILLFLDEPT 59 (525)
Q Consensus 32 lSgGerkRv~ia~~l---~~--~p~illlDEPt 59 (525)
+|+||+||..++++| .. +++++++|||+
T Consensus 297 ~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 297 SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 899999999999999 76 89999999997
No 149
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.66 E-value=1.6 Score=43.24 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 037973 32 VSGGERRRVSIGIDIIHDPILLFLDEP 58 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~illlDEP 58 (525)
||++|++|+..|...+.++++++.|+|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~ 160 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKA 160 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 778888888877777666666666665
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.81 E-value=1.4 Score=41.53 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---------CCchHHHhhcCeEEEee
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH---------QPSYRILGLLDRMIFLS 106 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~v~~~~d~v~~l~ 106 (525)
+|+++++||--. |+. ++++.++.+++.|..||++-| .++.++.+++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 356667777778999999999 67778999999999875
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.60 E-value=0.018 Score=53.35 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=39.8
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 45 DIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 45 ~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
+++.+|++++|||+|+++|..+...+.+.|++..++ +...|.+ ..+|+|+++++
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 566677777888889999999999999988887654 2234522 46999888764
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.63 E-value=2.7 Score=40.55 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEeCCCc---hHH
Q 037973 33 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDST----------SAYMVVKVLQRIAQ----SGSIVIMSIHQPS---YRI 95 (525)
Q Consensus 33 SgGerkRv~ia~~l~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~~~H~~~---~~v 95 (525)
+++++.|..+..+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 467788888888888899999999998765532 22233444433321 1234777888753 334
Q ss_pred HhhcCeEEE
Q 037973 96 LGLLDRMIF 104 (525)
Q Consensus 96 ~~~~d~v~~ 104 (525)
.+-|++++.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445665433
No 153
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=80.41 E-value=0.42 Score=43.28 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 037973 37 RRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRI 77 (525)
Q Consensus 37 rkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l 77 (525)
.++..+|++++.+|+++++| ||++|.....++.+.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999988653
No 154
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=75.47 E-value=5.2 Score=37.85 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=46.0
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC---------CchHHHhhcCeEEEee
Q 037973 46 IIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ---------PSYRILGLLDRMIFLS 106 (525)
Q Consensus 46 l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~---------~~~~v~~~~d~v~~l~ 106 (525)
.+.+.+++++||----.| +.+.++.+++.|..||++-++ +..++.+++|.|.-|.
T Consensus 87 ~~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HhccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 347789999999877643 667777777789999999999 8889999999999875
No 155
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.37 E-value=1.7 Score=45.14 Aligned_cols=58 Identities=2% Similarity=-0.024 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEeCC
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR-IAQSGSIVIMSIHQ 90 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~-l~~~g~tvi~~~H~ 90 (525)
++++-.+ +.|+.+|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 4577666 7889999899999999999999999999999999986 77788888876654
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.70 E-value=0.0055 Score=59.76 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=48.1
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHHcCCEEEEEe
Q 037973 19 AAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIL--LFLDEPTSGLDSTSA--------YMVVKVLQRIAQSGSIVIMSI 88 (525)
Q Consensus 19 ~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~i--lllDEPtsgLD~~~~--------~~i~~~l~~l~~~g~tvi~~~ 88 (525)
..+..|+....+ +|+| ||+.|+++++.+|++ +++||.|+.+|...+ ..+.+...++..+|+|.+...
T Consensus 161 ~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a 237 (261)
T 2eyu_A 161 ILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDA 237 (261)
T ss_dssp HEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHH
T ss_pred HhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHH
Confidence 344455543222 5788 889999999999999 999999999998743 234444445556788766555
Q ss_pred CC
Q 037973 89 HQ 90 (525)
Q Consensus 89 H~ 90 (525)
|.
T Consensus 238 ~r 239 (261)
T 2eyu_A 238 ME 239 (261)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.90 E-value=5.5 Score=39.67 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCc
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ---SGSIVIMSIHQPS 92 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~---~g~tvi~~~H~~~ 92 (525)
.+|.++++||+..- |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 4677899999974
No 158
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=72.03 E-value=1.2 Score=45.26 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 4 KIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 4 ~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
.+++.++++.+|+.+..|.... ++| ||+||++||+++ +++.-.....++++++.+
T Consensus 292 ~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 292 TQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA---------------IAETRFENYHRILESMAQ 346 (358)
T ss_dssp HHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHHh
Confidence 3456778888899887777765 499 999999999764 344444555566666543
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=70.05 E-value=3.5 Score=40.49 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=35.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCch
Q 037973 47 IHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 47 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
..+|++|++||+-. ..|..++..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 45799999999865 334477888889998888778777777776543
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=69.23 E-value=3 Score=37.72 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=29.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCCchHHHhh
Q 037973 47 IHDPILLFLDEPTS-GLDSTSAYMVV-KVLQRIAQSGSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 47 ~~~p~illlDEPts-gLD~~~~~~i~-~~l~~l~~~g~tvi~~~H~~~~~v~~~ 98 (525)
+.++++|++||+-. .++...+..++ .++.....++..+|++++.+..++...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 45688999999932 23333333344 455554455667777777765555543
No 161
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=68.93 E-value=8.5 Score=35.04 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---------CCchHHHhhcCeEEEee
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH---------QPSYRILGLLDRMIFLS 106 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~v~~~~d~v~~l~ 106 (525)
+.+++++||--- +|+. .++.+++++..|..||++.+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6543 36678888878999999999 66778999999998765
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.75 E-value=19 Score=36.18 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---HH-cCCEEEEEeCCCch------
Q 037973 39 RVSIGIDII--HDPILLFLDEPTSGLDST-------------SAYMVVKVLQRI---AQ-SGSIVIMSIHQPSY------ 93 (525)
Q Consensus 39 Rv~ia~~l~--~~p~illlDEPtsgLD~~-------------~~~~i~~~l~~l---~~-~g~tvi~~~H~~~~------ 93 (525)
-..++..++ .+++++++|+++.=.... .+..+.+.+++| ++ .+.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345555554 579999999999866311 122344444444 44 47888887774321
Q ss_pred ---------HHHhhcCeEEEeeCCcEEEec
Q 037973 94 ---------RILGLLDRMIFLSRGQTVYSG 114 (525)
Q Consensus 94 ---------~v~~~~d~v~~l~~G~~v~~G 114 (525)
.+...+|-++.+.+.++...|
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 345678888888776654444
No 163
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.49 E-value=8 Score=38.55 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHHHHHh----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHHc-CCEEEEEeCCC
Q 037973 38 RRVSIGIDII----HDPILLFLDEPTSGLDST------------SAYMVVKVLQRIAQS-GSIVIMSIHQP 91 (525)
Q Consensus 38 kRv~ia~~l~----~~p~illlDEPtsgLD~~------------~~~~i~~~l~~l~~~-g~tvi~~~H~~ 91 (525)
+.+..+..++ .+++++++|+.++-.+.. ...+++..|++++++ +.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4455555555 579999999999865432 135566667777764 77888877754
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.27 E-value=4.4 Score=40.07 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCccc--ccc-cccCCCCCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H----
Q 037973 5 IRVQALIDQLGLRNA--AKT-VIGDEGHRGVSGGE-RRRVSIGIDII---HDPILLFLDEPTSGLDS--------T---- 65 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~--~~~-~vg~~~~~glSgGe-rkRv~ia~~l~---~~p~illlDEPtsgLD~--------~---- 65 (525)
+++.+.++.+|+..- .+. .+. +..++.+ .+.+..+..++ .+|+++++|+.++-.+. .
T Consensus 156 ~~l~~~~~~~g~~~~~~~~~l~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~ 231 (324)
T 2z43_A 156 ERIENMAKALGLDIDNVMNNIYYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQ 231 (324)
T ss_dssp HHHHHHHHHTTCCHHHHHHTEEEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhccEEEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHH
Confidence 455556677776421 111 111 1133333 35566777777 57999999999875432 1
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEeCCC
Q 037973 66 SAYMVVKVLQRIAQS-GSIVIMSIHQP 91 (525)
Q Consensus 66 ~~~~i~~~l~~l~~~-g~tvi~~~H~~ 91 (525)
...+++..|++++++ +.+||++.|-.
T Consensus 232 ~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 232 KLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 135566667777754 77888876643
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=65.82 E-value=0.011 Score=60.73 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHHcCCEEEEEeCCCch
Q 037973 32 VSGGERRRVSIGIDIIHDPIL--LFLDEPTSGLDSTS---A-----YMVVKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 32 lSgGerkRv~ia~~l~~~p~i--lllDEPtsgLD~~~---~-----~~i~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
.||| ||++|+++++.+|++ +++||.|+.||... . ..+.+...++..+|+|.+...|..+.
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 4788 789999999999999 99999999999752 1 23444444555678887777777653
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.71 E-value=0.053 Score=50.36 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 31 GVSGGERRRVSIG-IDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 31 glSgGerkRv~ia-~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
+.|+||+||++++ +.++.++.++++|||.. +.+.+.-..++.+.+.....+.+...|
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 4799999999887 67777777777888731 011222235666666654445556665
No 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.71 E-value=0.37 Score=48.17 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
..||+|+|+|+.++ .+||+.+..++.++|++.++.
T Consensus 161 ~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 161 GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHH
Confidence 35999999998554 788999999999999998764
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=65.52 E-value=3.8 Score=36.83 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 037973 40 VSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIA 78 (525)
Q Consensus 40 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~ 78 (525)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999998887754
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=65.14 E-value=3.6 Score=41.58 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 6 RVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIG----IDI-IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 6 ~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia----~~l-~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
.+.++++.+++.+..--.|++. ..-+|+|+++|+.++ .++ ..+|++ +|+|++|.....++.+.|.++..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4567788887765432222221 112688888888877 444 334444 89999999999999999988764
No 170
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.72 E-value=2.8 Score=41.89 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 037973 30 RGVSGGERRRVSIGIDIIH------DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ 79 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~------~p~illlDEPtsgLD~~~~~~i~~~l~~l~~ 79 (525)
+.+|+|++|++..+.+++. +|++++ ||++|.....++.+.|.++.+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3478999999999998887 688876 999999999999999988754
No 171
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=64.19 E-value=0.0069 Score=64.85 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EeCCCchHHHhhc
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM--SIHQPSYRILGLL 99 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~--~~H~~~~~v~~~~ 99 (525)
.+|||||||..++. + | |+|||+.....+.+.+.++.++|+|+++ ++|+.. ++.+.+
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 47999998876541 1 7 9999998777777777777666788775 788865 455444
No 172
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=63.74 E-value=10 Score=35.36 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---------CCchHHHhhcCeEEEeeC
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH---------QPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H---------~~~~~v~~~~d~v~~l~~ 107 (525)
+.+++++||--- +|.. .++.++.++..|..||++-+ .++.++.+++|.|.-|..
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 479999999876 6543 34777887778999999999 788899999999998763
No 173
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=63.23 E-value=25 Score=36.19 Aligned_cols=60 Identities=17% Similarity=0.141 Sum_probs=40.6
Q ss_pred hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHc-CCEEEEEeCCCch------------------HHHhh
Q 037973 48 HDPILLFLDEPTSGLDS----------TSAYMVVKVLQRIAQS-GSIVIMSIHQPSY------------------RILGL 98 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~----------~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------------~v~~~ 98 (525)
.+|+++++|..+.=.+. ....++.+.|+.++++ +.+||+++|-... .+...
T Consensus 309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~ 388 (444)
T 2q6t_A 309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD 388 (444)
T ss_dssp SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence 47899999988753322 1235677888888875 7788888773210 24567
Q ss_pred cCeEEEeeC
Q 037973 99 LDRMIFLSR 107 (525)
Q Consensus 99 ~d~v~~l~~ 107 (525)
+|.|++|.+
T Consensus 389 aD~vi~L~r 397 (444)
T 2q6t_A 389 ADLVMFIYR 397 (444)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEec
Confidence 888888864
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.92 E-value=1.7 Score=47.09 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 037973 30 RGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQR 76 (525)
Q Consensus 30 ~glSgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 76 (525)
.++|+|++|++..+.....++.+||+||.-. |++..+..+.+.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4689999999999999999999999999988 899888887777764
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=56.47 E-value=13 Score=36.95 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCC
Q 037973 40 VSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQ-SGSIVIMSIHQP 91 (525)
Q Consensus 40 v~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~ 91 (525)
-.+++++..++.++.||.+|. .++++.++.+.+ .+.|+|++||..
T Consensus 234 ~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 234 KKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 347788877777777774443 466667777764 488999999964
No 176
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=54.89 E-value=37 Score=35.03 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCC--EEEEeCCCC---CC---C-HHHHHHHHHHHHHHHHc-CCEEEEEeCCCch------------------HHHhhcC
Q 037973 49 DPI--LLFLDEPTS---GL---D-STSAYMVVKVLQRIAQS-GSIVIMSIHQPSY------------------RILGLLD 100 (525)
Q Consensus 49 ~p~--illlDEPts---gL---D-~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~------------------~v~~~~d 100 (525)
+|+ ++++|--.. +- + .....++...|+.++++ |.+||+++|-.+. .+.+.+|
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD 387 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDAD 387 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCS
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCC
Confidence 677 888885432 10 1 12335667788888875 7888888874321 2666788
Q ss_pred eEEEeeC
Q 037973 101 RMIFLSR 107 (525)
Q Consensus 101 ~v~~l~~ 107 (525)
-|++|.+
T Consensus 388 ~Vi~L~r 394 (444)
T 3bgw_A 388 IIEFLYR 394 (444)
T ss_dssp EEEECCB
T ss_pred EEEEEec
Confidence 8888764
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.71 E-value=56 Score=32.69 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHHc-CCEEEEEeCCC-------
Q 037973 38 RRVSIGIDII--HDPILLFLDEPTSGLD----------------STSAYMVVKVLQRIAQS-GSIVIMSIHQP------- 91 (525)
Q Consensus 38 kRv~ia~~l~--~~p~illlDEPtsgLD----------------~~~~~~i~~~l~~l~~~-g~tvi~~~H~~------- 91 (525)
+-+.++..++ .+|+++++|+-++=.. .....+++..|+.++++ +.+||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3445666665 4699999998665443 12223455566677765 77788877761
Q ss_pred --------chHHHhhcCeEEEeeCCc
Q 037973 92 --------SYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 92 --------~~~v~~~~d~v~~l~~G~ 109 (525)
...+.+.+|.++.+.++.
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~~ 231 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRGE 231 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEecc
Confidence 112456889999998643
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=54.18 E-value=9.4 Score=37.39 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=31.0
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 47 IHDPILLFLDEPT-SGLDSTSAYMVVK-VLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 47 ~~~p~illlDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
+.++++|++||.- ..++...+..++. ++.....+++.+|+|++.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 4578999999982 2344444444544 565544456678888887766665543
No 179
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=53.05 E-value=16 Score=34.24 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Q 037973 42 IGIDIIHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQSGSIVIMSIH 89 (525)
Q Consensus 42 ia~~l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H 89 (525)
+..++..+|+++++||+-. ..+........+.+..+...|..++.|+|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3344557899999999763 23322222333333445567888888888
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=50.55 E-value=2.1 Score=38.88 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchH-HHhhcCeEEEee
Q 037973 33 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYR-ILGLLDRMIFLS 106 (525)
Q Consensus 33 SgGerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~-v~~~~d~v~~l~ 106 (525)
+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .+.++|+.+|..... +.+.||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 578899999999888888654333 3345555555554444332 356788888876432 356788888775
No 181
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=49.48 E-value=22 Score=35.70 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEeCCCch
Q 037973 49 DPILLFLDEPTSGLD---STSAYMVVKVLQRIAQSGSIVIMSIHQPSY 93 (525)
Q Consensus 49 ~p~illlDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~ 93 (525)
.|.++++||-=.=++ +..+..+.+.+++..+.|..+++++|.|++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999977774 667788888888888889999999999874
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=49.03 E-value=42 Score=33.26 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHHH-----c-CCEEEEEeCCC
Q 037973 39 RVSIGIDIIHDPILLFLDEP-------TSGLDSTSAYMVVKVLQRIAQ-----S-GSIVIMSIHQP 91 (525)
Q Consensus 39 Rv~ia~~l~~~p~illlDEP-------tsgLD~~~~~~i~~~l~~l~~-----~-g~tvi~~~H~~ 91 (525)
|-.+..+-..+|.+||+||. ..+.+.......-+++..+.. . +..+|.+++.|
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 34445555678999999998 334343343334444444431 1 23466788775
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.40 E-value=13 Score=33.84 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=31.4
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEeCCCc
Q 037973 48 HDPILLFLDEPTSGL-DSTSAYMVVKVLQRIAQSGSI-VIMSIHQPS 92 (525)
Q Consensus 48 ~~p~illlDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-vi~~~H~~~ 92 (525)
.+|+++++||.-.-- +......+.+.++.....++. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965422 233377788888888777765 777777543
No 184
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=47.89 E-value=0.092 Score=51.25 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 037973 31 GVSGGERRRVSIGIDIIHDPILLFLDEPTS 60 (525)
Q Consensus 31 glSgGerkRv~ia~~l~~~p~illlDEPts 60 (525)
.|||||+||+.+++++..+|++| ||++.
T Consensus 137 ~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 137 EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 48999999999999999999985 88864
No 185
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.07 E-value=4 Score=40.49 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=25.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCEEEEEeCCCc
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIA---QSGSIVIMSIHQPS 92 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~---~~g~tvi~~~H~~~ 92 (525)
.|.++++||+..-.|......+..+++.+. ..+.++|+++|++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 388999999987553221222333333332 23457889999874
No 186
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=46.44 E-value=30 Score=28.72 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=41.6
Q ss_pred hhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 47 IHDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 47 ~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
..+|+.+++| ...+.+|+.....+.+..+++.+.|..++++--++ .+.+.+
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l 97 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANS--RVSQKL 97 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCH--HHHHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHH
Confidence 4678999999 67889999999999999999999898888776554 354443
No 187
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=45.80 E-value=14 Score=33.19 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc---------hHHHhhcCeEEEeeC
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS---------YRILGLLDRMIFLSR 107 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~---------~~v~~~~d~v~~l~~ 107 (525)
+++++++||--- +|+ .+++.|+.++++|..|+++.++.. ..+.+++|.|.-|..
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 678999999743 443 366777888888899999888433 456667898876643
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=44.67 E-value=0.62 Score=48.29 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 037973 9 ALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLF 54 (525)
Q Consensus 9 ~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~ill 54 (525)
+.|..+|+.+.. ... .|||||+|| |+++|+.+|++..
T Consensus 278 ~rL~~lgl~~~~--~~~-----~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 278 TRLRDMGIEPFL--ISS-----SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHTCCHHH--HHH-----HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHcCCcHHH--HHH-----HHHHHHHHH--hhhhhcCCCCccC
Confidence 346677887643 333 499999999 9999999999875
No 189
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=42.07 E-value=40 Score=29.68 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
.++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..+.
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 677888888777888888888877778899999988877654
No 190
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.44 E-value=37 Score=23.16 Aligned_cols=16 Identities=6% Similarity=-0.064 Sum_probs=10.1
Q ss_pred HHHHHHHHhccccCCC
Q 037973 510 FLFYFSLLLGSKNKRR 525 (525)
Q Consensus 510 ~l~y~~L~~~~~~~r~ 525 (525)
++.++.+|.++++|+|
T Consensus 29 ~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHTTTCCSCC
T ss_pred HHHHHHhhhhHhhccC
Confidence 5556667777665555
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=40.05 E-value=34 Score=32.29 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCC
Q 037973 41 SIGIDIIHDPILLFLDEPTS----------GLDSTSAYMVVKVLQRIAQ---S-GSIVIMSIHQP 91 (525)
Q Consensus 41 ~ia~~l~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~---~-g~tvi~~~H~~ 91 (525)
.+..+....|.+|++||--. +-|......+.+++..+.. . +..+|.+++.|
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 34445566889999999733 1255666777777777642 2 34577788765
No 192
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.83 E-value=38 Score=23.07 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=9.7
Q ss_pred HHHHHHHHhccccCCC
Q 037973 510 FLFYFSLLLGSKNKRR 525 (525)
Q Consensus 510 ~l~y~~L~~~~~~~r~ 525 (525)
++.++.+|.+++++||
T Consensus 28 ~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 28 LTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHTTCSSCCC
T ss_pred HHHHHHhhhhhhhhcc
Confidence 4456666776665554
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=39.82 E-value=39 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=29.7
Q ss_pred HHHHHhhCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCc
Q 037973 42 IGIDIIHDPILLFLDEPTS-------------GLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 42 ia~~l~~~p~illlDEPts-------------gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
+..+.-..|.++++||--+ +.......++++.+..+... +..||.+++.|.
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 4444456799999999532 22223344444444433322 456888998874
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=39.47 E-value=16 Score=32.95 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 478999999765 7877776666655432 12456788888764
No 195
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=39.30 E-value=39 Score=28.31 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=40.5
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 48 HDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 48 ~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
.+++.+++| ...+.+|+.....+.+..+++.+.|..+.++--++ .+.+.+
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l 100 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSD--RLYGAL 100 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCH--HHHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHH
Confidence 678899999 56889999999999999999998898888776554 344433
No 196
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=38.17 E-value=44 Score=29.39 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
.++++.++...+.|..+|.+|..+.+.+.+++|.++.+..+.
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 567788887777888888888877778999999999887653
No 197
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=37.32 E-value=13 Score=35.11 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 037973 5 IRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPI 51 (525)
Q Consensus 5 ~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerkRv~ia~~l~~~p~ 51 (525)
++++++-+.+|. +..++.. +|+|||+.+++..|++|+..|+
T Consensus 53 ~~i~~le~~lg~-~L~~R~~-----~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 53 DAINEMNQLSEH-ILVERAT-----GGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHHHTS-CCEEECC-----CC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CeEEecC-----CCCCCCceEECHHHHHHHHHHH
Confidence 457777788888 5555543 5699999999999999999886
No 198
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=37.31 E-value=40 Score=29.60 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.++++.++...++|.++|.+|..+.+.+.+++|.++.+..|
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 55677777777788888877777777789999988876654
No 199
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=36.65 E-value=44 Score=29.25 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..+
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 56778887777778878887877777899999999887754
No 200
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=35.92 E-value=48 Score=29.40 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.++++.++...++|..+|.+|..+.+.+.+++|.++.+..+
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 55677777766778877777777666788899988766544
No 201
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.64 E-value=35 Score=33.19 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=41.5
Q ss_pred HHHHHHHh---hCCCEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHHc-CCEEEEEeCCCc-----------
Q 037973 40 VSIGIDII---HDPILLFLDEPTSGLD--------ST----SAYMVVKVLQRIAQS-GSIVIMSIHQPS----------- 92 (525)
Q Consensus 40 v~ia~~l~---~~p~illlDEPtsgLD--------~~----~~~~i~~~l~~l~~~-g~tvi~~~H~~~----------- 92 (525)
+.....++ .+++++++|.-+.=.. .. ...+++..|++++++ +.+||++.|-..
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~ 271 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQ 271 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcC
Confidence 44445555 4589999998875321 11 125566667777765 667777655321
Q ss_pred ----hHHHhhcCeEEEeeCC
Q 037973 93 ----YRILGLLDRMIFLSRG 108 (525)
Q Consensus 93 ----~~v~~~~d~v~~l~~G 108 (525)
..+.+.+|.++.|.+.
T Consensus 272 ~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 272 AIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp ESSHHHHHHHCSEEEEEEEC
T ss_pred CCCcHHHHhcCcEEEEEEec
Confidence 1255567888888653
No 202
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=35.19 E-value=37 Score=30.38 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.++++.++...+.|..+|.+|..+.+.+.+++|.++.+..+
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 56777777777789899988888888899999999988764
No 203
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=34.76 E-value=43 Score=30.73 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 33 SGGERRRVSIGIDIIHDPILLFLDEPTS-GLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 33 SgGerkRv~ia~~l~~~p~illlDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
+.|.-.+.. ..-+.+-+++++||.=. ++|.......++.+.....+-+++++|-.-+.....++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445544442 33578999999999965 68776665555554443333456666655555555555543
No 204
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=34.46 E-value=57 Score=27.35 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 49 DPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 49 ~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
+++.+++| ...+.+|+.....+.+..+++.+.|..+.++-.++ .+.+.++
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~ 113 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSA--QVVNDLT 113 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCH--HHHHHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 67889999 57889999999999999999998888888776553 3554443
No 205
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=34.03 E-value=56 Score=29.35 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCC-CCCHHH----------HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 49 DPILLFLDEPTS-GLDSTS----------AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 49 ~p~illlDEPts-gLD~~~----------~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
+.++..++++.. .+++.. ..++++.++...+.|..+|.+|-.+.+.+.+++|.++.+..+.
T Consensus 73 g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 73 GYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 456666666543 343322 3677788887777888888888887778999999998876553
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.97 E-value=92 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCCc
Q 037973 42 IGIDIIHDPILLFLDEPTSGL-----------DSTSAYMVVKVLQRIAQ---S-GSIVIMSIHQPS 92 (525)
Q Consensus 42 ia~~l~~~p~illlDEPtsgL-----------D~~~~~~i~~~l~~l~~---~-g~tvi~~~H~~~ 92 (525)
+..+.-..|.+|++||.-.=. +......+.+++..+.. . +..+|.++..+.
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 333444569999999975421 23334445555555543 1 335666776654
No 207
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=33.61 E-value=18 Score=39.06 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCCH-HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEeC
Q 037973 30 RGVSG-GERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG-SIVIMSIH 89 (525)
Q Consensus 30 ~glSg-GerkRv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H 89 (525)
.+++. ++++...+...++.+|.-++++.+|.++|..+. ...++++++...| +||++.+|
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 34543 455778899999999999999999999998844 4777888876655 67777776
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.45 E-value=1.3e+02 Score=29.90 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=42.2
Q ss_pred HHHHHHHHh--hCCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---HHc-CCEEEEEeCCCch------
Q 037973 39 RVSIGIDII--HDPILLFLDEPTSGL-----DS--------TSAYMVVKVLQRI---AQS-GSIVIMSIHQPSY------ 93 (525)
Q Consensus 39 Rv~ia~~l~--~~p~illlDEPtsgL-----D~--------~~~~~i~~~l~~l---~~~-g~tvi~~~H~~~~------ 93 (525)
-+.++..++ .+++++++|..++=. |. ..+..+.+.+++| +++ +.+||++.|-...
T Consensus 140 ~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 140 ALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------
T ss_pred HHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC
Confidence 345566665 469999999988643 11 1223445555555 444 6677776664321
Q ss_pred ---------HHHhhcCeEEEeeCCcE
Q 037973 94 ---------RILGLLDRMIFLSRGQT 110 (525)
Q Consensus 94 ---------~v~~~~d~v~~l~~G~~ 110 (525)
.+...+|-++.|.+++.
T Consensus 220 ~p~~~~gg~al~~~a~~rl~L~r~~~ 245 (366)
T 1xp8_A 220 NPETTTGGRALKFYASVRLDVRKIGQ 245 (366)
T ss_dssp ------CHHHHHHHCSEEEEEEEESC
T ss_pred CccccCCcchhhheeeEEEEEEecch
Confidence 13456788888887653
No 209
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=33.18 E-value=27 Score=27.70 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=41.6
Q ss_pred hhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 47 IHDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 47 ~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
..+|+.+++| ....-+|+.....+.+..+++.++|.++.++--++ .+.+++++
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~ 94 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNE--ASETMVDR 94 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH--HHTTCC--
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHH
Confidence 3578889888 56889999999999999999999999988775543 46665554
No 210
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=33.07 E-value=1.4e+02 Score=30.97 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=40.7
Q ss_pred hCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHc-CCEEEEEeCCCc---------------------hHHHh
Q 037973 48 HDPILLFLDEPTSGL-------DS-TSAYMVVKVLQRIAQS-GSIVIMSIHQPS---------------------YRILG 97 (525)
Q Consensus 48 ~~p~illlDEPtsgL-------D~-~~~~~i~~~l~~l~~~-g~tvi~~~H~~~---------------------~~v~~ 97 (525)
.+|+++++|=-+. + +. ....+++..|+.++++ +.+||+++|-.. ..+..
T Consensus 353 ~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~ 431 (503)
T 1q57_A 353 LGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 431 (503)
T ss_dssp TCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHH
T ss_pred cCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhe
Confidence 4799999995432 2 11 2335677888888875 888888887542 13556
Q ss_pred hcCeEEEeeC
Q 037973 98 LLDRMIFLSR 107 (525)
Q Consensus 98 ~~d~v~~l~~ 107 (525)
.+|-|++|.+
T Consensus 432 ~aD~vi~l~r 441 (503)
T 1q57_A 432 LSDTIIALER 441 (503)
T ss_dssp HCSEEEEEEE
T ss_pred cCcEEEEEEe
Confidence 7899998864
No 211
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=32.10 E-value=1.2e+02 Score=23.56 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHhhCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 42 IGIDIIHDP-ILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 42 ia~~l~~~p-~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
+...+...+ +.+++| .-.+.+|+.....+.+..+++.++|..+.++.-+| .+.+++
T Consensus 35 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l 92 (110)
T 1sbo_A 35 LRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKE--SISRIL 92 (110)
T ss_dssp HHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCH--HHHHHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH
Confidence 333344444 778889 67889999999999999999988888877765443 455444
No 212
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=31.27 E-value=73 Score=29.13 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHH--cCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 67 AYMVVKVLQRIAQ--SGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 67 ~~~i~~~l~~l~~--~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
..++++.++...+ .|..+|.+|..+.+.+.+++|.++....+.
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 3678888888888 898888888888888999999999876653
No 213
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=31.16 E-value=76 Score=28.16 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhh---cCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGL---LDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~---~d~v~~l~~G 108 (525)
.++++.++...++|..+|.+|..+.+.+.++ +|.++....+
T Consensus 127 ~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 127 ANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 6677888887778888888888777789999 9988887654
No 214
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=29.51 E-value=73 Score=31.47 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 67 AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 67 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
..++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..|.
T Consensus 104 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 4778888888777899999999988889999999999988764
No 215
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=29.45 E-value=34 Score=28.01 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=41.0
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCe
Q 037973 48 HDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDR 101 (525)
Q Consensus 48 ~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~ 101 (525)
.+|+.+++| ...+.+|+.....+.+..+++.+ |..++++--+| .+.+.+++
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~--~v~~~l~~ 95 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEF--QPLRTMAR 95 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCH--HHHHHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCH--HHHHHHHH
Confidence 678999998 67889999999999999999988 98888776554 35554443
No 216
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=28.81 E-value=62 Score=29.31 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
.++++.++...++|..+|.+|-.+.+.+.+++|.++.+..|
T Consensus 145 ~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 56777888777778888887777767788999988887765
No 217
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=28.13 E-value=78 Score=30.99 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 67 AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 67 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
..++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..|.
T Consensus 87 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 87 TPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 3677788887777899999999988889999999999888764
No 218
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=27.22 E-value=84 Score=26.26 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
.+..++++||.- .|+...+..+.+.+.+..+.+..+|+++..+
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 357899999964 6788888888888776543445677766654
No 219
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.71 E-value=1.9e+02 Score=22.47 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Q 037973 47 IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90 (525)
Q Consensus 47 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 90 (525)
-..|+++++|--..+.|. .++.+.+++.. .+..+|+.+.+
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 84 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDG---IEILKRMKVID-ENIRVIIMTAY 84 (124)
T ss_dssp HHCCSEEEEESCCTTCCH---HHHHHHHHHHC-TTCEEEEEESS
T ss_pred ccCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCCEEEEEcc
Confidence 358999999988877775 34455555432 23344444443
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.55 E-value=69 Score=33.45 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=28.8
Q ss_pred HHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCc
Q 037973 42 IGIDIIHDPILLFLDEPT----------SGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPS 92 (525)
Q Consensus 42 ia~~l~~~p~illlDEPt----------sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~ 92 (525)
+..+.-..|.+||+||-- ..++...+..+++.+..+... +..||.+++.|.
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 344555678999999961 122223344444444443333 345777888874
No 221
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.51 E-value=1.1e+02 Score=27.05 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhh---cCeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGL---LDRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~---~d~v~~l~~G 108 (525)
.++++.++...++|..+|.+|..+.+.+.++ +|.++.+..+
T Consensus 123 ~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 123 RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 6777888887778888888888777778888 8987776543
No 222
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=26.33 E-value=42 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcC
Q 037973 49 DPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLD 100 (525)
Q Consensus 49 ~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d 100 (525)
+++.+++| +-.+.+|+.....+.+..+++.+.|..++++.-+| .+.+.++
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~ 97 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQ--DLRESLR 97 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSS--HHHHHHH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHH
Confidence 46889999 67889999999999999999988888887776654 3555443
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=26.15 E-value=2.3e+02 Score=34.46 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHHc-CCEEEEEeC--------
Q 037973 37 RRRVSIGIDII--HDPILLFLDEPTSGLD----------------STSAYMVVKVLQRIAQS-GSIVIMSIH-------- 89 (525)
Q Consensus 37 rkRv~ia~~l~--~~p~illlDEPtsgLD----------------~~~~~~i~~~l~~l~~~-g~tvi~~~H-------- 89 (525)
.+-...++.++ .+|+++++|+...=.. .....+++..|+.++++ |.+||++.|
T Consensus 796 eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~ 875 (1706)
T 3cmw_A 796 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 875 (1706)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCC
T ss_pred HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccc
Q ss_pred --CC-----chHHHhhcCeEEEeeCCcEEEecC
Q 037973 90 --QP-----SYRILGLLDRMIFLSRGQTVYSGS 115 (525)
Q Consensus 90 --~~-----~~~v~~~~d~v~~l~~G~~v~~G~ 115 (525)
+| +..+.+.+|-++.+.+++....|+
T Consensus 876 ~Gdp~~p~gs~~Leq~ADvvl~L~R~~~~~~g~ 908 (1706)
T 3cmw_A 876 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 908 (1706)
T ss_dssp SSCCEEESSCSHHHHHEEEEEEEEEEEEEEETT
T ss_pred cCCccccCCcchhhheeeEEEEEEecccccccc
No 224
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=25.63 E-value=33 Score=33.20 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEeCCCchHHHhhcCeEE
Q 037973 32 VSGGERRRVSIGIDII--HDPILLFLDEPTSGLDSTS-AYMVVKVLQRIAQS-GS--IVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 32 lSgGerkRv~ia~~l~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tvi~~~H~~~~~v~~~~d~v~ 103 (525)
+|+|++ .++..+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+.. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4555665 68999998 7899876 67778888888764 43 4556777754 5777777765
No 225
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.32 E-value=1.3e+02 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-EeCC
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIM-SIHQ 90 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~-~~H~ 90 (525)
..|+++++|--..+.|. .++++.+++... ...||+ +.+.
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~-~~~ii~ls~~~ 87 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITP-HMAVIILTGHG 87 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCT-TCEEEEEECTT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCC-CCeEEEEECCC
Confidence 58999999988877764 345555555322 334444 4444
No 226
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=25.20 E-value=2.2e+02 Score=27.83 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=31.6
Q ss_pred HHHHHhhCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHHH--cCCEEEEEeCCC---chHHHhhcCeEE
Q 037973 42 IGIDIIHDPILLFLDEPTSGLD----------STSAYMVVKVLQRIAQ--SGSIVIMSIHQP---SYRILGLLDRMI 103 (525)
Q Consensus 42 ia~~l~~~p~illlDEPtsgLD----------~~~~~~i~~~l~~l~~--~g~tvi~~~H~~---~~~v~~~~d~v~ 103 (525)
+..+-...|.+||+||--+=.. ......++..+..+.. .+..||.+++.| ...+.+-||+.+
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 212 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 212 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEE
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEE
Confidence 3444456899999999653211 1112233333333221 244567788876 334455555544
No 227
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=25.10 E-value=2.4e+02 Score=27.15 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHhhCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHH-----cCCEEEEEeCCC
Q 037973 42 IGIDIIHDPILLFLDEPTS-------GLDSTSAYMVVKVLQRIAQ-----SGSIVIMSIHQP 91 (525)
Q Consensus 42 ia~~l~~~p~illlDEPts-------gLD~~~~~~i~~~l~~l~~-----~g~tvi~~~H~~ 91 (525)
+..+-...|.+||+||--+ +........+-+++..+-. .+..||.++..|
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 3444457899999999743 1122222333344444431 234566778776
No 228
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=24.71 E-value=90 Score=28.07 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc---CeEEEeeCC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL---DRMIFLSRG 108 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~---d~v~~l~~G 108 (525)
.++++.++...+.|..+|.+|..+.+.+.+++ |.++.+...
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 56777777777788888887777777888899 988876543
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=24.70 E-value=1.2e+02 Score=28.56 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc----------CCEEEEEeCCCchHHHhh
Q 037973 42 IGIDIIHDP-ILLFLDEPTSGLDSTSAYMVVKVLQRIAQS----------GSIVIMSIHQPSYRILGL 98 (525)
Q Consensus 42 ia~~l~~~p-~illlDEPtsgLD~~~~~~i~~~l~~l~~~----------g~tvi~~~H~~~~~v~~~ 98 (525)
+..++...| .++++||. ..|++..+..+++.+.+-.-. +..+|++++.....+.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~ 177 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEG 177 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTT
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhh
Confidence 444555445 89999998 678888888888877663211 223677777755444443
No 230
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.11 E-value=80 Score=27.44 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeC
Q 037973 68 YMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSR 107 (525)
Q Consensus 68 ~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~ 107 (525)
.++++.++...+.|..+|.+|..+.+ +.+.+|.++.+..
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 66778888777778888888888777 8899998887764
No 231
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=23.96 E-value=88 Score=30.75 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCCc
Q 037973 67 AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQ 109 (525)
Q Consensus 67 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G~ 109 (525)
..++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..|.
T Consensus 103 T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~ 145 (334)
T 3hba_A 103 SPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGE 145 (334)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCC
Confidence 4677888888777898899999888888999999999988764
No 232
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=23.77 E-value=1.8e+02 Score=22.41 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 90 (525)
..|+++++|--..+.|. .++.+.+++....-..|+++.+.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCC
Confidence 47999999988777664 34555555533222334444444
No 233
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.62 E-value=1.5e+02 Score=30.39 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCCchHHHhhcCeEE
Q 037973 38 RRVSIGIDIIHDPILLFLDEPTS----------GLDSTSAYMVVKVLQRIAQ----SGSIVIMSIHQPSYRILGLLDRMI 103 (525)
Q Consensus 38 kRv~ia~~l~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~~~v~~~~d~v~ 103 (525)
-|-....|-...|.|+|+||-=+ +-|......+.++|..+-. .+..||.+|.+|.. .|.-
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA- 336 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA- 336 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-
Confidence 34455566677899999999753 2244455556667776632 24578899999862 3433
Q ss_pred EeeCCc---EEEecCCCC
Q 037973 104 FLSRGQ---TVYSGSPMN 118 (525)
Q Consensus 104 ~l~~G~---~v~~G~~~~ 118 (525)
++..|| .++.+.|+.
T Consensus 337 llRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 337 LLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp TTSTTSEEEEECCCCCCH
T ss_pred HhCCCccceeeecCCcCH
Confidence 245565 466777754
No 234
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.41 E-value=1.3e+02 Score=30.94 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=44.4
Q ss_pred HHHHHHHHhhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 39 RVSIGIDIIHDPILLFLDEPT----------SGLDSTSAYMVVKVLQRIAQ----SGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 39 Rv~ia~~l~~~p~illlDEPt----------sgLD~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
|-....|-...|.|+|+||-= ++=|......+.++|..+-. .+..||.+|.+|.. .|.- +
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~A-l 337 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPA-L 337 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTT-T
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHh-H
Confidence 445555667789999999942 12233444555666666632 24568889998863 2322 2
Q ss_pred eeCCc---EEEecCCCC
Q 037973 105 LSRGQ---TVYSGSPMN 118 (525)
Q Consensus 105 l~~G~---~v~~G~~~~ 118 (525)
+..|| .++.+.|+.
T Consensus 338 lRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 338 LRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp CSTTSEEEEEECCCCCH
T ss_pred hcCCceeEEEEeCCcCH
Confidence 34554 467777764
No 235
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.36 E-value=2.6e+02 Score=21.78 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=23.8
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 49 DPILLFLDEPTSG-LDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 49 ~p~illlDEPtsg-LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
.|+++++|--..+ .|. .++++.+++....-..|+++.+..
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESSCC
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCcc
Confidence 7999999987775 664 345555655432223344454443
No 236
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=23.24 E-value=25 Score=31.46 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=29.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 037973 47 IHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS 80 (525)
Q Consensus 47 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~ 80 (525)
..||+|+|=||..+|=|-....++.+.|..|+..
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~~ 102 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLAIS 102 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHHHH
Confidence 3489999999999999999999999999888753
No 237
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=23.08 E-value=1e+02 Score=30.48 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhcCeEEEeeCC
Q 037973 67 AYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRG 108 (525)
Q Consensus 67 ~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~d~v~~l~~G 108 (525)
..++++.++...+.|..+|.+|..+.+.+.+.+|.++.+..|
T Consensus 102 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 366777777777779999999998888999999999998877
No 238
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.99 E-value=47 Score=32.21 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
+++++++|| ...+++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 456999999 788999888888877776432 334666777765
No 239
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.77 E-value=1.4e+02 Score=30.69 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=47.6
Q ss_pred HHH-HHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCCchHHHhhc
Q 037973 35 GER-RRVSIGIDIIHDPILLFLDEPTS----------GLDSTSAYMVVKVLQRIAQ----SGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 35 Ger-kRv~ia~~l~~~p~illlDEPts----------gLD~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~~~v~~~~ 99 (525)
+|+ -|-....|--..|.|+|+||-=+ +-|......+.++|..+-. .+..||.+|.+|.. .
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----L 334 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----L 334 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----C
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----c
Confidence 444 34555556667899999999543 2233455566666666532 24568889999863 3
Q ss_pred CeEEEeeCCcE---EEecCCCC
Q 037973 100 DRMIFLSRGQT---VYSGSPMN 118 (525)
Q Consensus 100 d~v~~l~~G~~---v~~G~~~~ 118 (525)
|.-+ +..||. ++.+.|+.
T Consensus 335 DpAL-lRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 335 DPAL-IRPGRIDRKILFENPDL 355 (437)
T ss_dssp CTTS-SCTTTEEEEECCCCCCH
T ss_pred CHHH-hcCCceeEEEEcCCcCH
Confidence 4332 355654 67777754
No 240
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=22.67 E-value=71 Score=27.97 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=28.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
.++.++++||. ..++......+.+.+.+. ..+..+|+++..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 46889999995 456776666666666552 22345677776653
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.17 E-value=1.8e+02 Score=26.54 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCCc
Q 037973 45 DIIHDPILLFLDEP----------TSGLDSTSAYMVVKVLQRIAQ----SGSIVIMSIHQPS 92 (525)
Q Consensus 45 ~l~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~ 92 (525)
+.-..|.++++||- .++-+......+.++++.+-. .+..||.++++|.
T Consensus 100 a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 100 AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp HHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 33456889999995 111112222334445555432 2446788888874
No 242
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=21.81 E-value=2.2e+02 Score=27.90 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH-HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 037973 3 KKIRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERR-RVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSG 81 (525)
Q Consensus 3 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~glSgGerk-Rv~ia~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g 81 (525)
.+..++++++.+|..+..-.... ..+-|..++. |+.-..+-+..+|+++..-|+-..-. -.. ..++.+.+.+
T Consensus 30 a~~dv~~i~~~~G~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~DvIi~q~P~~~~~~-~~~---~~~~~lk~~~ 102 (339)
T 3rhz_A 30 CQNTVTDVAVSLGYRELGIYCYQ---IHTDSESELSKRLDGIVAGLRHGDVVIFQTPTWNTTE-FDE---KLMNKLKLYD 102 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCC---GGGSCHHHHHHHHHHHTTTCCTTCEEEEEECCSSCHH-HHH---HHHHHHTTSS
T ss_pred HHHHHHHHHHHCCCeEEEeeccc---cccccHHHHHHHHHHHHhcCCCCCEEEEeCCCcchhh-HHH---HHHHHHHhcC
Confidence 35689999999999764311110 0123445543 55444445778999999999743211 112 2344444457
Q ss_pred CEEEEEeCCCch
Q 037973 82 SIVIMSIHQPSY 93 (525)
Q Consensus 82 ~tvi~~~H~~~~ 93 (525)
.-+++.+||..+
T Consensus 103 ~k~i~~ihDl~p 114 (339)
T 3rhz_A 103 IKIVLFIHDVVP 114 (339)
T ss_dssp CEEEEEESCCHH
T ss_pred CEEEEEecccHH
Confidence 779999999754
No 243
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.93 E-value=2.8e+02 Score=28.05 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=44.2
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----cCCEEEEEeCCCchHHHhhcCeEEE
Q 037973 39 RVSIGIDIIHDPILLFLDEPTSG----------LDSTSAYMVVKVLQRIAQ----SGSIVIMSIHQPSYRILGLLDRMIF 104 (525)
Q Consensus 39 Rv~ia~~l~~~p~illlDEPtsg----------LD~~~~~~i~~~l~~l~~----~g~tvi~~~H~~~~~v~~~~d~v~~ 104 (525)
|-....|-...|.|+|+||-=+= -|......+.++|..+-. .+..||.+|.+|.. .|.-+
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-----LDpAl- 304 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-----LDPAL- 304 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----SCHHH-
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----CCHhH-
Confidence 33445555678999999996542 233445556666766632 24468889998863 23322
Q ss_pred eeCC---cEEEecCCCC
Q 037973 105 LSRG---QTVYSGSPMN 118 (525)
Q Consensus 105 l~~G---~~v~~G~~~~ 118 (525)
+..| +.++.+.|+.
T Consensus 305 lRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 305 LRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp HSTTSSCCEEECCCCCH
T ss_pred cCCCcCceEEEcCCcCH
Confidence 2334 3567777764
No 244
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.91 E-value=1.8e+02 Score=24.02 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=25.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Q 037973 49 DPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQP 91 (525)
Q Consensus 49 ~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~ 91 (525)
+|+++|+|--..+.|. .++++.|++....-..|+++.+..
T Consensus 83 ~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~~~ 122 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDG---ITCLSNIMEFDKNARVIMISALGK 122 (157)
T ss_dssp GCCEEEECSSCSSSCH---HHHHHHHHHHCTTCCEEEEESCCC
T ss_pred CCCEEEEeccCCCccH---HHHHHHHHhhCCCCcEEEEeccCc
Confidence 7899999988888774 455555655443334455555543
No 245
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.79 E-value=1.7e+02 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=23.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQ 90 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 90 (525)
.+|+++++|-...+.|. .++++.+++.. .+..||+.+.+
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 83 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRKRQ-YSGIIIIVSAK 83 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTT-CCSEEEEEECC
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHhcC-CCCeEEEEeCC
Confidence 58999999998888774 34445555422 23344444443
No 246
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.69 E-value=0.74 Score=49.01 Aligned_cols=72 Identities=7% Similarity=-0.030 Sum_probs=49.5
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchHH--HhhcCeEEEeeCCcEEEe-cCCCCh
Q 037973 44 IDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYRI--LGLLDRMIFLSRGQTVYS-GSPMNL 119 (525)
Q Consensus 44 ~~l~~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~v--~~~~d~v~~l~~G~~v~~-G~~~~~ 119 (525)
++|..| +||++ ||.+.+|| ++..+.. +|.+. +.++.+++|.+. ++ .++.|++..+..+.++.. +++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md-~~t~~~la~~ia~~gg~gii~~~~t~e~~ 100 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMD-TVTEADMAIAMALMGGIGFIHHNCTPEFQ 100 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCT-TTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehh-hhhhhhHHHHHHhcCCeeEEecCCCHHHH
Confidence 788888 99999 99999999 4433322 23222 456778889876 45 668888888877777754 466555
Q ss_pred hhH
Q 037973 120 PHF 122 (525)
Q Consensus 120 ~~~ 122 (525)
.++
T Consensus 101 ~~~ 103 (514)
T 1jcn_A 101 ANE 103 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 247
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.67 E-value=2.2e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=23.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIH 89 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H 89 (525)
..|+++++|-...+.|. .++.+.+++....-..++++.+
T Consensus 44 ~~~dlvl~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 44 GNYDLVILDIEMPGISG---LEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp SCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHccCCCCeEEEEECC
Confidence 57999999998877774 3455555553322233444443
No 248
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.49 E-value=1.9e+02 Score=23.43 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=39.0
Q ss_pred hhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHhhc
Q 037973 47 IHDPILLFLD-EPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLL 99 (525)
Q Consensus 47 ~~~p~illlD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~v~~~~ 99 (525)
..+++.+++| +-.+.+|+.....+.+..+++.++|..+.++.-+| .+.+++
T Consensus 49 ~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l 100 (125)
T 2ka5_A 49 NKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNE--KVERVL 100 (125)
T ss_dssp TTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHHHH
T ss_pred hCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH
Confidence 3467788888 56889999999999999999988888877664443 455544
No 249
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=20.30 E-value=1.5e+02 Score=23.19 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=23.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
..|+++++|--..+.|. .++++.+++.. .+..||+.+.+..
T Consensus 46 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 46 VRNGVLVTDLRMPDMSG---VELLRNLGDLK-INIPSIVITGHGD 86 (126)
T ss_dssp CCSEEEEEECCSTTSCH---HHHHHHHHHTT-CCCCEEEEECTTC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhcC-CCCCEEEEECCCC
Confidence 47999999988777774 34445554422 2333444444333
No 250
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.29 E-value=1.2e+02 Score=27.37 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=40.8
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCchH---------HHhhcCeEEEee
Q 037973 47 IHDPILLFLDEPTS----GLDSTSAYMVVKVLQRIAQS-GSIVIMSIHQPSYR---------ILGLLDRMIFLS 106 (525)
Q Consensus 47 ~~~p~illlDEPts----gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~---------v~~~~d~v~~l~ 106 (525)
-.+|+++++|.-+. .-|.....+++..|+.++++ +.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45899999996432 12455667788888888865 88999988864321 344688888775
No 251
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.25 E-value=2.7e+02 Score=21.28 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=25.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Q 037973 48 HDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPS 92 (525)
Q Consensus 48 ~~p~illlDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 92 (525)
..|+++++|--..+.|. .++.+.+++ .....+|+.+.+..
T Consensus 45 ~~~dlvi~d~~l~~~~g---~~~~~~l~~--~~~~~ii~~s~~~~ 84 (122)
T 1zgz_A 45 QSVDLILLDINLPDENG---LMLTRALRE--RSTVGIILVTGRSD 84 (122)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHT--TCCCEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCh---HHHHHHHHh--cCCCCEEEEECCCC
Confidence 57999999988888775 345555554 23344555554443
Done!