BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037974
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
           Coxiella Burnetii
          Length = 462

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 74  DEFYTRMSDDLNTSHILTGAFLDALKFINNSXXXXXXXXLSLIESLLKIENEVKVVLDVL 133
           D FY    DD NT  I      + ++ IN           + IE    +  E+K + ++ 
Sbjct: 342 DRFYEAXDDDFNTP-IAFALLFEXVREINRFRDN------NQIEKAAVLAAELKCLGNIF 394

Query: 134 GLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRK 193
           GLL     YS   +Q    A K A++ E  +  LI++R  A+  KD+  +DQIR  LT  
Sbjct: 395 GLL----QYSP--EQFLQGAKKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDL 446

Query: 194 GIALMDVRKETIWR 207
           G+A+ D    T WR
Sbjct: 447 GVAIEDSSDGTSWR 460


>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
 pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
          Length = 501

 Score = 37.0 bits (84), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 167 LIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKET 204
           LIEER  AK  K+F ++D+IR    +KG  L+D ++ T
Sbjct: 459 LIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGT 496


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,005,008
Number of Sequences: 62578
Number of extensions: 220458
Number of successful extensions: 625
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 11
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)