BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037974
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 48 ALSPFQEDARSGSITPAAEDC------IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFI 101
AL+ E SG+ TPA D + F M DD NT+ L G D ++ I
Sbjct: 322 ALAGIDERLASGAHTPADADNTEFAEKVAGFAGRFGDAMDDDFNTALAL-GHLFDLVRVI 380
Query: 102 NNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAE 161
N ++ L+E K++ EV + VLG+ S + LQ++KD+ E++
Sbjct: 381 N---RELPTASTGLLE---KVKAEVAKMAAVLGICD--SVPAAFLQRMKDRKTSDMEMSA 432
Query: 162 NDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
++ LI ERA A+K K+F + D+IR L K I L+D + T W+
Sbjct: 433 EEIETLIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTWK 478
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 40 ITLQDCEVAL-------SPFQEDARSGSITPA---AEDCIK--KLRDEFYTRMSDDLNTS 87
I +QD E AL Q+ A+ PA A+D K + F M++D NT+
Sbjct: 307 IAMQDAETALVRLYECLHDIQQLAKGDPTLPALISAKDAAKLNSIETRFQEAMNNDFNTA 366
Query: 88 HILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENE-VKVVLDVLGLLPEGSTYSEVL 146
L G DA+K IN +++ +L +LK ++ + ++GLL E + L
Sbjct: 367 LAL-GVLYDAIKIINRAQRALTDTPSALDVKMLKGSMTLIQKLAGIVGLLQEDANL--FL 423
Query: 147 QQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIW 206
QQ K+K L ++ E ++ I++R A+ NKD+++SD+IR L KGI L D T W
Sbjct: 424 QQRKEKMLSGIDITEAEIESYIQQRLDARANKDWARSDEIRDILLEKGITLKDGADGTGW 483
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 76 FYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGL 135
F M DD NT+ + G D ++ +N + K++ +L +++ + + DVLG+
Sbjct: 364 FREAMDDDFNTA-LAMGHIFDLVRCVNRVLSEAKERSNTLSALCAQVKANIGKIADVLGI 422
Query: 136 LPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGI 195
S + +L +LKD+ +++ ++ LI ERA A+K KDF +SD+IR L K I
Sbjct: 423 FT--SEPASLLTRLKDRKASELDISVEEIERLITERAAARKAKDFKRSDEIRDFLLGKNI 480
Query: 196 ALMDVRKETIW 206
L+D + T W
Sbjct: 481 VLLDSAQGTSW 491
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 40 ITLQDCEVALSPFQEDARSGSITPAAEDC------IKKLRDEFYTRMSDDLNTSHILTGA 93
+ L+ AL+ E SG+ TPA D + F M DD NT+ L G
Sbjct: 314 LGLERIYKALAGIYERLASGANTPAGADNAEFVEKVAGFAGRFGDAMDDDFNTALAL-GH 372
Query: 94 FLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKA 153
D ++ IN ++ L+E + + EV + VLG+ S + LQ++KD+
Sbjct: 373 LFDLVRVIN---RELPTASTGLLE---QAKAEVAKMAAVLGICD--SVPAAFLQRMKDRK 424
Query: 154 LKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
E++ ++ LI ERA A+K K+F + D+IR L K I L+D + T W+
Sbjct: 425 TSDIEMSAEEIEALIAERAEARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTWK 478
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 61 ITPAAEDCIKKLRD---EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIE 117
+ PA + +KL+ F M DD NT+ L G +A++ N + Q + +
Sbjct: 345 LPPAGAELHEKLQSLISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQTPATLA 403
Query: 118 SLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKN 177
L ++ DVLGL S + L+ +K + E++ ++ LI ERA A+ N
Sbjct: 404 LLGQVRRLFAETGDVLGLFT--SQPAAWLESIKQAKSDQMEISPQEIEQLIAERAAARTN 461
Query: 178 KDFSKSDQIRADLTRKGIALMDVRKETIW 206
+DF + D+IR L +KGI L+D + T W
Sbjct: 462 RDFKRGDEIRDLLLQKGIQLLDSPQGTTW 490
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=cysS PE=3 SV=1
Length = 467
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENE 125
E + + R+ F+ M DD NTS + D K +N +KK+ + + LSL + ++ +
Sbjct: 337 EPLVGEYRERFHQAMDDDFNTSSAVA-VLFDMAKAVNVAKKEDRTRALSLAKGMVDL--- 392
Query: 126 VKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+VLGLL E L Q + + + +AE + I +R A+ NKDF++SD+
Sbjct: 393 ----AEVLGLL---QADPESLMQGEGEEVGGLSVAE--IEDFIAQRNAARANKDFAESDR 443
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR L KG+ L D R+ T W+
Sbjct: 444 IRDLLKEKGVLLNDSREGTSWQ 465
>sp|Q1QVV6|SYC_CHRSD Cysteine--tRNA ligase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=cysS PE=3 SV=1
Length = 461
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 60 SITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESL 119
+ P A + R+ F M DD NT+ L D + +N +K++ +L L
Sbjct: 324 GVAPVAGEVAAGYRERFIAAMDDDFNTAEALA-VLFDLARELNRAKQEAPAHAPALAHEL 382
Query: 120 LKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKD 179
E+ VL + G PEG LQ R ++E D+ IE RA AKK KD
Sbjct: 383 ----KELGGVLGLFGQDPEG-----FLQ----AGAGRLPMSEEDIEARIEARAQAKKAKD 429
Query: 180 FSKSDQIRADLTRKGIALMDVRKETIW 206
F+ +D IR +L GI L D R T W
Sbjct: 430 FATADGIRDELAALGIVLKDGRDGTTW 456
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 76 FYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGL 135
F M DD NT+ + F D ++ +N + ++ I+ EV + VLG+
Sbjct: 364 FGEAMDDDFNTALAMAHVF-DLVRCVNRVLSETAGASDNICSLCTLIKAEVAKIAGVLGI 422
Query: 136 LPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGI 195
S + L++LK + ++A +++ LI ER A+K KDF +SD+IR L K I
Sbjct: 423 FS--SKPASFLERLKSRKAGNLDIAVDEIERLIAERTAARKAKDFKRSDEIRDQLAAKNI 480
Query: 196 ALMDVRKETIW 206
L+D ++ T W
Sbjct: 481 VLLDSQQGTTW 491
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINN-SKKQPKQQQLSLIESLLKIENEVK 127
++ L+ EF M DD NT+ L G + +K IN K+P Q + I+ L+ + +K
Sbjct: 351 LENLKPEFEKAMDDDFNTAKAL-GILFEFIKEINRFMDKKPSQNKE--IDFLVTAKRAIK 407
Query: 128 VVLDVLGLLPEGST--YSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ VL L Y ++L+ +K+ + E ++ LI+ER A+KNKD+ K+D
Sbjct: 408 EIGSVLNLFQRQPVDWYRDLLK------VKKIAIKEEEINRLIKERTEARKNKDWKKADS 461
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR L KGI L D TIW+
Sbjct: 462 IREQLLSKGIILEDKPDRTIWK 483
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 41 TLQDCEVALSPFQEDARSGSITPAA-------EDCIKKLRDEFYTRMSDDLNTSHILTGA 93
LQD + LS F E + S AA + L + F M DD NT+ + G
Sbjct: 308 NLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATLENVFREAMDDDFNTAAAI-GH 366
Query: 94 FLDALKFINN----SKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQL 149
DA++ IN + +++++ + +L ++ VL + P + L+Q+
Sbjct: 367 LFDAVRTINRLITEKGFRKNREKVAQVRALYDALLKLGGVLGLFVSDP-----AAWLKQM 421
Query: 150 KDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
L E+D+ I +R A+KNKDF+++D+IR +L KGI L+D + T W+
Sbjct: 422 NLAMLATTGYTESDIEDFIRQRQEARKNKDFARADEIRDELAAKGIQLLDGPQGTAWK 479
>sp|B0S0W3|SYC_FINM2 Cysteine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=cysS PE=3 SV=1
Length = 462
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENE 125
+D IK R++F M DD+NT+ ++ F D +K+IN + + +
Sbjct: 340 DDNIKTFREKFEQAMDDDINTADAISVLF-DFIKYINKNYDENTSKN------------- 385
Query: 126 VKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
++LD L+ + S +L + D L ++++ LIE+R A+K KDF K+D+
Sbjct: 386 --ILLDAKKLMDDISYVLGILFKEDDDDL------DSEIEELIEQRNAARKEKDFKKADE 437
Query: 186 IRADLTRKGIALMDVRKETIW 206
IR L GI L D R IW
Sbjct: 438 IRDKLLSMGIVLKDTRDGVIW 458
>sp|B2G5S5|SYC_LACRJ Cysteine--tRNA ligase OS=Lactobacillus reuteri (strain JCM 1112)
GN=cysS PE=3 SV=1
Length = 470
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 21/159 (13%)
Query: 49 LSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108
L+ ++DA G + D +++ +F T M DD+N + + + + +K+ N
Sbjct: 331 LTYREQDADEGDVQEVT-DRLEQFHHQFITAMDDDINVQNGIATVY-ELVKYAN---VYA 385
Query: 109 KQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLI 168
+Q +SL ++ I+ E+ ++ + G+ E S Q+ D+ +K+ LI
Sbjct: 386 QQDNVSL-GAIQAIKKELVELMSIFGVKLEASD-----NQINDEKIKQ----------LI 429
Query: 169 EERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
EER A+KNKDF++SD+IR +L ++GI L D + T ++
Sbjct: 430 EERNIARKNKDFARSDEIRDNLKKQGIILEDTPQGTRYK 468
>sp|A5VI99|SYC_LACRD Cysteine--tRNA ligase OS=Lactobacillus reuteri (strain DSM 20016)
GN=cysS PE=3 SV=1
Length = 470
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 21/159 (13%)
Query: 49 LSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108
L+ ++DA G + D +++ +F T M DD+N + + + + +K+ N
Sbjct: 331 LTYREQDADEGDVQEVT-DRLEQFHHQFITAMDDDINVQNGIATVY-ELVKYAN---VYA 385
Query: 109 KQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLI 168
+Q +SL ++ I+ E+ ++ + G+ E S Q+ D+ +K+ LI
Sbjct: 386 QQDNVSL-GAIQAIKKELVELMSIFGVKLEASD-----NQINDEKIKQ----------LI 429
Query: 169 EERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
EER A+KNKDF++SD+IR +L ++GI L D + T ++
Sbjct: 430 EERNIARKNKDFARSDEIRDNLKKQGIILEDTPQGTRYK 468
>sp|Q65PC8|SYC_BACLD Cysteine--tRNA ligase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=cysS PE=3 SV=1
Length = 467
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 11 PAFVRTLLLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGS-ITPAAEDCI 69
P +R +L + + + + S+ + N + A S Q +S + +T + +
Sbjct: 286 PQVLRFFMLSVHYRHPINYSV-ELLENTKNAFGRLKTAYSNLQHRLKSSTNLTEGDSEWL 344
Query: 70 KKL---RDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEV 126
+K+ R F T M DD NT++ ++ F D K N Q K +I++ +++ +E+
Sbjct: 345 EKIEEQRKAFQTAMDDDFNTANAISVLF-DLAKHAN-YYLQEKNTAEHVIQAFIQLFDEI 402
Query: 127 KVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQI 186
VLG +LK EL + D+ LIE+R A++N+DF+ SDQI
Sbjct: 403 ---CSVLGF-----------------SLKEQELLDKDIEELIEKRNEARRNRDFATSDQI 442
Query: 187 RADLTRKGIALMDVRKETIWR 207
R L I L D + T W+
Sbjct: 443 RDQLKSMNIILEDTPQGTRWK 463
>sp|A9KSM5|SYC_CLOPH Cysteine--tRNA ligase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=cysS PE=3 SV=1
Length = 470
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 26/139 (18%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKV 128
IKK D M DD NT+ ++ F + +K N S +E + K+ + +
Sbjct: 356 IKKFED----AMDDDFNTADAISSIF-EMVKLSNTYVTVE-----SSVEMIQKVLSNITT 405
Query: 129 VLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRA 188
D+LGL E K+AE+ + ++ LI +R +A+K KDF+KSD+IR
Sbjct: 406 FCDILGLETE----------------KKAEILDEEIEQLIADRQSARKAKDFAKSDEIRN 449
Query: 189 DLTRKGIALMDVRKETIWR 207
L KGI L D R+ W+
Sbjct: 450 LLLEKGIILEDTREGVKWK 468
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 61 ITPA--AEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIES 118
+ PA AE KL EF M+DD NT + F A K+ KQ+ L
Sbjct: 326 LVPADQAEPAESKLEAEFMAAMNDDFNTPQAMAVLFELA-------KEVNKQKSPGLAAL 378
Query: 119 LLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNK 178
L K+ N++ GLL E + S Q D ++L + + LI ERA A+K K
Sbjct: 379 LKKLANQI-------GLL-EQTAESFFKSQPSD-----SDLTDEMIEALIVERAEARKAK 425
Query: 179 DFSKSDQIRADLTRKGIALMDVRKETIWR 207
DFS+SD+IR +L +GI L+D + T WR
Sbjct: 426 DFSRSDEIRDELLAQGIELLDSAEGTSWR 454
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 9/142 (6%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINN---SKKQPKQQQLSLIESLLKIENE 125
+ L F M DD NT+ L G D+++ +N + +E L E
Sbjct: 350 VAGLLPRFREAMDDDFNTAQAL-GTLFDSIRTLNRLLAEGGGSSSASRADLEQLRAAVTE 408
Query: 126 VKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ VL + + P S+ L + + + E++ ++ LI ERA A+KNKDF +SD+
Sbjct: 409 IGAVLGLFRIKP-----SDWLAAREAEKARHLEISPEEIEGLIVERAAARKNKDFKRSDE 463
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR L + I L+D + T W+
Sbjct: 464 IRDYLLSRDIQLVDTPQGTAWK 485
>sp|A6KZ38|SYC_BACV8 Cysteine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=cysS PE=3 SV=1
Length = 493
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 24/154 (15%)
Query: 61 ITPAAE----DCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFIN---NSKKQPKQQQL 113
ITPA + + +K LR++ YT M+DDLN+ I+ D + IN + K + L
Sbjct: 354 ITPATQTTGIEGVKDLREKCYTAMNDDLNSP-IVIAHLFDGARMINTVLDKKATISAEDL 412
Query: 114 SLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERAT 173
++S+ + + ++LGL E + +E ++ K + L+E+R
Sbjct: 413 EELKSMFHL-----FMYEILGLKEEAAN-NEAHEEAYGKVVDM----------LLEQRMK 456
Query: 174 AKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
AK NKD++ SD+IR +L G + D + W+
Sbjct: 457 AKANKDWATSDKIRDELAALGFEVKDTKDGFTWK 490
>sp|A6VX53|SYC_MARMS Cysteine--tRNA ligase OS=Marinomonas sp. (strain MWYL1) GN=cysS
PE=3 SV=1
Length = 460
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 41 TLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKF 100
+L + +VAL R + + E + + F M DD NT+ + + ++
Sbjct: 308 SLLEAKVALERLYTALRQQQVAESFEPTV--FTERFEEAMKDDFNTA-VAVSVLFELVRE 364
Query: 101 INNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELA 160
+N +K + + SLL E ++ + ++LGLL + Y L++ + L
Sbjct: 365 LNKAKTEDANKA-----SLLAAE--LRSLAELLGLLYQDPEYF-----LQNSTVSEG-LG 411
Query: 161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIW 206
E + LI+ER A+K+K+F++SD+IR +L +GI L+D R+ T W
Sbjct: 412 EVAIQALIDERTQARKDKNFARSDEIRDELASQGIELLDSREGTTW 457
>sp|B2TIF6|SYC_CLOBB Cysteine--tRNA ligase OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=cysS PE=3 SV=1
Length = 470
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 30/145 (20%)
Query: 67 DCIKKLRDEFYTRMSDDLNTSHILTGAF---LDALKFIN-NSKKQPKQQQLSLIESLLKI 122
+ +KK R+++ +M DD NT+ LT F D IN NS K+ + L+LI L
Sbjct: 349 NSLKKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINVNSSKELVNKALNLIRELGA- 407
Query: 123 ENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSK 182
LGLL Q++ +L E+++ LI++R A+KNKDF+
Sbjct: 408 ---------PLGLL----------QKITKGSL------EDEIESLIQQRQDARKNKDFAL 442
Query: 183 SDQIRADLTRKGIALMDVRKETIWR 207
SD+IR DL +GI L D + W+
Sbjct: 443 SDKIRDDLKDRGIVLEDTPQGVRWK 467
>sp|C0ZIF7|SYC_BREBN Cysteine--tRNA ligase OS=Brevibacillus brevis (strain 47 / JCM 6285
/ NBRC 100599) GN=cysS PE=3 SV=1
Length = 468
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKV 128
I +LR+ F M DD+NT++ +T F D +K N + Q + E EV+
Sbjct: 349 IGELRERFIAEMDDDINTANAITVIF-DVVKEAN---LYLRHQNVG--------ETEVRA 396
Query: 129 VLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRA 188
+D+L E+ + L + EL ++++ LIEER A+K ++F++SD+IR
Sbjct: 397 YMDLL---------VELTEVLGLDIAEEQELLDSEIDALIEERTEARKARNFARSDEIRD 447
Query: 189 DLTRKGIALMDVRKETIWR 207
L KGI L D + WR
Sbjct: 448 LLAAKGIVLEDTPQGVRWR 466
>sp|B4U9I4|SYC_HYDS0 Cysteine--tRNA ligase OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=cysS PE=3 SV=1
Length = 488
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 18/147 (12%)
Query: 70 KKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ--------PKQQQLSLIESLLK 121
K +++FY +S+D NTS + F +A+ +N +K + PK+ +E L
Sbjct: 349 KSTQEQFYKALSEDFNTSLAIAHIF-NAVAELNKAKTESFKIGYITPKE-----LEGYLF 402
Query: 122 IENEVKVVL-DVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDF 180
+ N +K L D+ GLL E +T L+ L+ + ++ + LI+ R AK+NKDF
Sbjct: 403 LANSLKQTLKDIFGLLEE-NTLQNTLKTLEPAS--SVNISTEFLEILIKARNLAKENKDF 459
Query: 181 SKSDQIRADLTRKGIALMDVRKETIWR 207
+D IR +L GI L D + TIW+
Sbjct: 460 KVADFIRDELLNYGIKLEDTKAGTIWK 486
>sp|Q7US70|SYC_RHOBA Cysteine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=cysS PE=3 SV=2
Length = 537
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 59 GSITPAAEDC---IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFIN-----NSKKQPKQ 110
G PA + I +R++F M DD NT ++ DAL+ +N N
Sbjct: 386 GGFDPAGDALLTEIHAIREKFLAAMDDDFNTGAAIS-VLFDALRTLNRHIDANQLAAGAD 444
Query: 111 QQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEE 170
+ +ESL+K + + + VLGL + S D+A AEL ++ V LI
Sbjct: 445 AKSPAVESLVKATSVIAELSRVLGLFAKPPATSG-----GDEA--DAELLDSVVHLLINL 497
Query: 171 RATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIW 206
R A++ KD++ D IR L G+AL+D ++ T W
Sbjct: 498 RKEARERKDYATGDAIRDRLADLGVALLDKKEGTSW 533
>sp|B7GJ46|SYC_ANOFW Cysteine--tRNA ligase OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=cysS PE=3 SV=1
Length = 465
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 22/139 (15%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKV 128
I++LR+EF M DD NT++ + A L L N +I++ L+ + +
Sbjct: 347 IEELRNEFIREMDDDFNTANGI--AVLFELAKQANVYLMENHTSQQVIQAFLQ---QFEQ 401
Query: 129 VLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRA 188
+ DVLGL +L++ EL + ++ LI++R A+KN+DF+ +D+IR
Sbjct: 402 LFDVLGL-----------------SLQQDELLDEEIEALIQQRIEARKNRDFALADRIRD 444
Query: 189 DLTRKGIALMDVRKETIWR 207
+L K I L D + T WR
Sbjct: 445 ELKAKNIILEDTPQGTRWR 463
>sp|C4Z3N5|SYC_EUBE2 Cysteine--tRNA ligase OS=Eubacterium eligens (strain ATCC 27750 /
VPI C15-48) GN=cysS PE=3 SV=1
Length = 472
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 26/146 (17%)
Query: 61 ITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLL 120
I + +D KK D M DD NT+ ++ F + +K N++ ++ I++L+
Sbjct: 350 IIASIDDIYKKFEDS----MDDDFNTADAISAIF-ELVKLANSNSSSDNSKEY--IDTLM 402
Query: 121 KIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDF 180
K ++ + D+LGL K K+ E+ + D+ LI ER A+K+K+F
Sbjct: 403 K---KITTLTDILGL----------------KTDKKEEMLDEDIEALIAERQQARKDKNF 443
Query: 181 SKSDQIRADLTRKGIALMDVRKETIW 206
+++D+IR +L KGI L D R+ W
Sbjct: 444 ARADEIRDELLAKGIVLKDTREGVRW 469
>sp|B9IZH4|SYC_BACCQ Cysteine--tRNA ligase OS=Bacillus cereus (strain Q1) GN=cysS PE=3
SV=1
Length = 465
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
+KK + F M+DD NT++ +T + N Q L S + I+ VK
Sbjct: 347 LKKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIQAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|B7HQS4|SYC_BACC7 Cysteine--tRNA ligase OS=Bacillus cereus (strain AH187) GN=cysS
PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
+KK + F M+DD NT++ +T + N Q L S + I+ VK
Sbjct: 347 LKKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIQAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|A0R8G1|SYC_BACAH Cysteine--tRNA ligase OS=Bacillus thuringiensis (strain Al Hakam)
GN=cysS PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|Q6FC71|SYC_ACIAD Cysteine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=cysS
PE=3 SV=1
Length = 473
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 40 ITLQDCEVALSPFQEDARSGSITPAAEDCIKK---LRDEFYTRMSDDLNTSHILTGAFLD 96
+ L++ + AL+ F ++ D +K + F M DD NT + F +
Sbjct: 311 VALKEAKTALTRFYHAFKAYEQVYGQNDSTQKDEQFIERFNIAMRDDFNTPEAIAVLF-E 369
Query: 97 ALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLK-DKALK 155
+ +N + K+ + +Q ++ L+ + +LGL+ +V + LK D +
Sbjct: 370 LNRELNRAVKEQQAEQAAIYYVTLR------HLTQILGLVQH-----DVDEFLKSDIGQE 418
Query: 156 RAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
L+++++ +I++RA AKK KDFS +D IR L +G+ L D R+ T+WR
Sbjct: 419 VLSLSDDEIQAMIQQRADAKKAKDFSGADAIRQALLDQGVVLEDTRQGTLWR 470
>sp|C1ET19|SYC_BACC3 Cysteine--tRNA ligase OS=Bacillus cereus (strain 03BB102) GN=cysS
PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|Q6HPS8|SYC_BACHK Cysteine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=cysS PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|Q63HB0|SYC_BACCZ Cysteine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=cysS
PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|B7JK97|SYC_BACC0 Cysteine--tRNA ligase OS=Bacillus cereus (strain AH820) GN=cysS
PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|Q81VV1|SYC_BACAN Cysteine--tRNA ligase OS=Bacillus anthracis GN=cysS PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|C3LJ62|SYC_BACAC Cysteine--tRNA ligase OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=cysS PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|C3P9N5|SYC_BACAA Cysteine--tRNA ligase OS=Bacillus anthracis (strain A0248) GN=cysS
PE=3 SV=1
Length = 465
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVK- 127
++K + F M+DD NT++ +T + N Q L S + IE VK
Sbjct: 347 LEKFQTAFEEAMNDDFNTANAITELY--------NVANHANQYLLEEHTSTVVIEAYVKQ 398
Query: 128 --VVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQ 185
+ D+LGL L + EL + ++ LI++R A+KN+DF+ SDQ
Sbjct: 399 LETLFDILGL-----------------ELAQEELLDEEIEALIQKRIEARKNRDFALSDQ 441
Query: 186 IRADLTRKGIALMDVRKETIWR 207
IR DL + I L D + T W+
Sbjct: 442 IRDDLKDRNIILEDTAQGTRWK 463
>sp|A1U1Q7|SYC_MARAV Cysteine--tRNA ligase OS=Marinobacter aquaeolei (strain ATCC 700491
/ DSM 11845 / VT8) GN=cysS PE=3 SV=1
Length = 463
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 60 SITPAAE-DCIKKLRDE-FYTRMSDDLNTSHILTGAFLDALKF-INNSKKQPKQQQLSLI 116
I PA E D + D F M DD NT+ + A L A+ IN+ +++ ++
Sbjct: 324 GIVPAKEADVAETDHDRRFAEVMDDDFNTAGAI--AVLHAVANDINHYRREGDEEAAKRS 381
Query: 117 ESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKK 176
++L V++ VLGLL + E Q A +EL D+ +I+ RA A+K
Sbjct: 382 AAVL-----VRLGA-VLGLLQQNP---EAFFQ----ADTGSELTAEDIEAMIQARADARK 428
Query: 177 NKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
KDF+++D+IR DL KGI L D R+ T WR
Sbjct: 429 AKDFAEADRIRDDLLEKGIILDDSREGTTWR 459
>sp|Q6MKR7|SYC_BDEBA Cysteine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=cysS PE=3 SV=1
Length = 482
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 41 TLQDCEVALSP--FQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDAL 98
L E L+P QEDA IT +D KK+ + M+ D T F + +
Sbjct: 321 ALSMAESYLTPEVTQEDAAFAKIT---QDAWKKVEEA----MNHDFGTPDAFAAMF-EVV 372
Query: 99 KFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAE 158
+ N ++ + ++ L N V+ + ++ L E + L +L D LK+
Sbjct: 373 RQFNAQVRRGMKANPAIQGKALAFHNFVRKMGSMMSLFQEPA--HAFLIKLDDMLLKKMN 430
Query: 159 LAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIW 206
L + V L+ ER A+ KDF+KSD++RA +T GI++ D + + W
Sbjct: 431 LERSAVDALVAERGEARAAKDFAKSDELRAKITALGISVSDTPEGSFW 478
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 76 FYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGL 135
F M DD NT+ L G D ++ +N + + + L + I+ V VLGL
Sbjct: 355 FREAMDDDFNTAQAL-GYVFDLVRAVNRVLAEGEIDRAVLASAREAIDR----VGAVLGL 409
Query: 136 L-PEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKG 194
E + E L+ K AL E AE + LIEER A+K +DF ++D+IR L +G
Sbjct: 410 FTSEPGAFVERLKSRKAAALP-IEAAE--IERLIEERNAARKARDFRRADEIRDTLAAQG 466
Query: 195 IALMDVRKETIWR 207
I L+D + T W+
Sbjct: 467 ILLLDSAQGTTWK 479
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 28/173 (16%)
Query: 41 TLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAF--LDAL 98
TL++ VA+S + R A + I+ R +FY M DD NT+ L F +A+
Sbjct: 322 TLENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEAMDDDFNTAEALKAVFEVSNAI 381
Query: 99 KFINNSKKQPKQQQLSLIESLLKIENEV-KVVLDVLGLLPEGSTYSEVLQQLKDKALKRA 157
++PK ES+L+ E K V +V GL + + ++ K
Sbjct: 382 NRYLTEVEKPK-------ESILRKAWEFFKDVGEVFGL------FEDYFKEQK------- 421
Query: 158 ELAEND---VLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
AEND + L+E RA +K K F +D+IR +L + GI L D + T+W+
Sbjct: 422 --AENDEELINLLVEVRAQLRKEKKFDLADKIREELRKLGIQLEDTPQGTVWK 472
>sp|A1WT89|SYC_HALHL Cysteine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=cysS PE=3 SV=1
Length = 459
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 18 LLDIFWLNELFASIPQYTGNETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFY 77
++ +F L+ + S YTG+ L + L R PAA + R+ F
Sbjct: 288 VVRLFLLSSHYRSPLNYTGD---ALDEARGGLERLYNALRG---LPAAAPARSQARERFR 341
Query: 78 TRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLP 137
M DD NT L D + IN ++ + + L+ E+ VL +L P
Sbjct: 342 EAMDDDFNTREALA-VLFDGAREINRLREAGDASGAASAAAELR---ELGAVLGLLQQDP 397
Query: 138 EGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIAL 197
E +V A+ ++ L+ +R A+K KDF+++D+IR +L +GI L
Sbjct: 398 EAYLRGDV-----------ADAEAEEIESLVAQRTAARKAKDFAEADRIRDELQARGIEL 446
Query: 198 MDVRKETIWR 207
D + T WR
Sbjct: 447 EDTPEGTKWR 456
>sp|A6UWT0|SYC_META3 Cysteine--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=cysS PE=3 SV=1
Length = 479
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 41 TLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDAL-- 98
T+Q+ VA + + I + I ++FYT M D+ NT+ L F +
Sbjct: 320 TIQNITVAFRNSEIKYKLNEIDKNTIETIHNCTEKFYTAMDDNFNTAQALKYVFEVSTAI 379
Query: 99 -KFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRA 157
K+INN + S+I LK K+V ++ G+ +
Sbjct: 380 NKYINNYANSDELPNYSII---LKSYEFFKMVGEIFGIFGSSTI----------NTATNT 426
Query: 158 ELAENDVLH-LIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
+AE ++++ L+E RA KK K+++ SD+IR L I L D K TIW+
Sbjct: 427 NIAEENLINILMELRADLKKEKNYNLSDKIRDKLKEMDIILEDSPKGTIWK 477
>sp|Q6GJD9|SYC_STAAR Cysteine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=cysS PE=3 SV=1
Length = 466
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 67 DCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEV 126
D I + + F T M+DD NT++ +T A+ D K N + + + E + K +
Sbjct: 343 DQIDAILNRFETVMNDDFNTANAIT-AWYDLAKLAN----KYVLENTTSTEVIDKFKAVY 397
Query: 127 KVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQI 186
++ DVLG+ LK K K EL + DV LIEER A+KNKDF+++D+I
Sbjct: 398 QIFSDVLGV------------PLKSK--KADELLDEDVEKLIEERNEARKNKDFARADEI 443
Query: 187 RADLTRKGIALMD 199
R L + I L D
Sbjct: 444 RDMLKSQNIILED 456
>sp|B2UY90|SYC_CLOBA Cysteine--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=cysS PE=3 SV=1
Length = 470
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 30/145 (20%)
Query: 67 DCIKKLRDEFYTRMSDDLNTSHILTGAF---LDALKFIN-NSKKQPKQQQLSLIESLLKI 122
+ + K R+++ +M DD NT+ LT F D IN NS K+ + L LI L
Sbjct: 349 NSLNKYREKYIEKMDDDFNTADALTVLFELTKDTNTNINVNSSKELVNKALDLIRELGA- 407
Query: 123 ENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSK 182
LGLL Q++ +L E+++ LI++R A+KNKDF+
Sbjct: 408 ---------PLGLL----------QKITKGSL------EDEIESLIQQRQDARKNKDFAL 442
Query: 183 SDQIRADLTRKGIALMDVRKETIWR 207
SD+IR DL +GI L D + W+
Sbjct: 443 SDKIRDDLKDRGIVLEDTPQGVRWK 467
>sp|Q5LIT7|SYC_BACFN Cysteine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=cysS PE=3 SV=1
Length = 491
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 19/170 (11%)
Query: 42 LQDCEVALSPFQEDARS-GSITPAAEDCI--KKLRDEFYTRMSDDLNTSHILTGAFLDAL 98
LQ E LS E S ITPAA + K LR + + M+DDLNT +++ F D
Sbjct: 334 LQAAEKGLSRLMEAVDSLEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLF-DGA 392
Query: 99 KFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPE-GSTYSEVLQQLKDKALKRA 157
K INN ++ L ++ + D+LGL E GS+ ++ A +
Sbjct: 393 KMINNIIAGNNTISADDLKDLKEVFH--TFCFDILGLKEEIGSS------DGREAAYGKV 444
Query: 158 ELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
V L+E+R AK NKD++ SD IR +LT G + D + W+
Sbjct: 445 ------VDMLLEQRVKAKANKDWATSDLIRNELTALGFEIKDTKDGFEWK 488
>sp|Q64ZY1|SYC_BACFR Cysteine--tRNA ligase OS=Bacteroides fragilis (strain YCH46)
GN=cysS PE=3 SV=1
Length = 491
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 42 LQDCEVALSPFQEDARS-GSITPAAEDCI--KKLRDEFYTRMSDDLNTSHILTGAFLDAL 98
LQ E LS E S ITPAA + K LR + + M+DDLNT +++ F D
Sbjct: 334 LQAAEKGLSRLMEAVDSLEKITPAATSNVDVKSLRTKCFEAMNDDLNTPIVISHLF-DGA 392
Query: 99 KFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPE-GST------YSEVLQQLKD 151
K INN ++ L ++ + D+LGL E GS+ Y +V+ L
Sbjct: 393 KMINNIIAGNNTISADDLKDLKEVFH--TFCFDILGLKEEIGSSDGREAAYGKVVDML-- 448
Query: 152 KALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWR 207
+E+R AK NKD++ SD IR +LT G + D + W+
Sbjct: 449 ----------------LEQRVKAKANKDWATSDLIRNELTALGFEIKDTKDGFEWK 488
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 74 DEFYTRMSDDLNTSHILTGAF---LDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVL 130
+ F M DD NT+ L F A + + K + L L + + ++ V
Sbjct: 354 ERFREAMDDDFNTAQALGFVFDLVRSANRVLGEGKGGGSNRAL-----LAEARDRIRKVG 408
Query: 131 DVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADL 190
VLG+ S ++LK++ + ++ LI ER A+ N+DF ++D+IR L
Sbjct: 409 AVLGIFT--SEPRAFAERLKNRKAAELPITAEEIERLIAERIAARANRDFKRADEIRDSL 466
Query: 191 TRKGIALMDVRKETIWR 207
KGI L+D + T W+
Sbjct: 467 AAKGIMLLDSPQGTTWK 483
>sp|Q5M6F6|SYC_STRT2 Cysteine--tRNA ligase OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=cysS PE=3 SV=1
Length = 447
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 31/133 (23%)
Query: 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVL 133
D F M DD NT++ +T F D K+IN+ +++ + +L V
Sbjct: 343 DAFQAAMDDDFNTANGVTVLF-DMAKWINSGNYDE------------TVKDAFEKILQVF 389
Query: 134 GLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRK 193
G++ E T E D+ LIEER A+ NKDF+ +D+IR +L +
Sbjct: 390 GIVFEEETLDE------------------DIEKLIEERQAARANKDFATADRIRDELAAQ 431
Query: 194 GIALMDVRKETIW 206
GI L+D ++ W
Sbjct: 432 GIKLLDTKEGVRW 444
>sp|Q5M1W6|SYC_STRT1 Cysteine--tRNA ligase OS=Streptococcus thermophilus (strain CNRZ
1066) GN=cysS PE=3 SV=1
Length = 447
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 31/133 (23%)
Query: 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVL 133
D F M DD NT++ +T F D K+IN+ +++ + +L V
Sbjct: 343 DAFQAAMDDDFNTANGVTVLF-DMAKWINSGNYDE------------TVKDAFEKILQVF 389
Query: 134 GLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRK 193
G++ E T E D+ LIEER A+ NKDF+ +D+IR +L +
Sbjct: 390 GIVFEEETLDE------------------DIEKLIEERQAARANKDFATADRIRDELAAQ 431
Query: 194 GIALMDVRKETIW 206
GI L+D ++ W
Sbjct: 432 GIKLLDTKEGVRW 444
>sp|Q4FRZ9|SYC_PSYA2 Cysteine--tRNA ligase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=cysS PE=3 SV=1
Length = 488
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLG 134
+F M+DD N+S ++ F A + IN + K + IES ++ ++K + L
Sbjct: 364 DFIKAMNDDFNSSTAISVLFGLA-RDINKASK------VEDIESAWQLAQQLKALAQTLN 416
Query: 135 LLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKG 194
+L + + LQ + +A + L + + LI ERA AK NK+F+++D+IR L G
Sbjct: 417 ILQQ--PVQQFLQAVIGEAAEDG-LTDEAIDSLIIERADAKTNKNFARADEIRIQLKDAG 473
Query: 195 IALMDVRKETIWR 207
I L D R T WR
Sbjct: 474 IELEDSRAGTTWR 486
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,569,284
Number of Sequences: 539616
Number of extensions: 3293797
Number of successful extensions: 12394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 11645
Number of HSP's gapped (non-prelim): 705
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)