Query 037974
Match_columns 233
No_of_seqs 202 out of 1134
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.6E-36 3.5E-41 276.3 18.1 173 8-209 285-464 (464)
2 PLN02946 cysteine-tRNA ligase 100.0 5.6E-35 1.2E-39 274.1 18.4 206 8-216 340-552 (557)
3 PRK14536 cysS cysteinyl-tRNA s 100.0 3.6E-32 7.8E-37 252.6 20.3 179 9-208 298-489 (490)
4 PRK14535 cysS cysteinyl-tRNA s 100.0 2.7E-32 6E-37 258.3 18.0 173 8-209 525-699 (699)
5 PRK00260 cysS cysteinyl-tRNA s 100.0 9.2E-32 2E-36 250.3 19.9 179 8-209 283-463 (463)
6 PRK14534 cysS cysteinyl-tRNA s 100.0 1.9E-31 4.1E-36 246.9 20.3 178 9-209 298-481 (481)
7 TIGR00435 cysS cysteinyl-tRNA 100.0 1E-31 2.2E-36 249.9 18.3 181 8-208 282-465 (465)
8 PTZ00399 cysteinyl-tRNA-synthe 100.0 2E-29 4.2E-34 242.1 20.6 197 8-214 332-553 (651)
9 cd07963 Anticodon_Ia_Cys Antic 100.0 1.4E-27 3.1E-32 192.1 17.1 154 31-208 1-156 (156)
10 KOG2007 Cysteinyl-tRNA synthet 99.9 1.5E-24 3.1E-29 197.1 11.2 189 8-211 322-524 (586)
11 PRK12418 cysteinyl-tRNA synthe 99.6 2.9E-16 6.4E-21 142.6 8.1 83 9-107 280-364 (384)
12 TIGR03447 mycothiol_MshC cyste 99.6 8.6E-16 1.9E-20 140.4 7.8 82 9-106 307-390 (411)
13 PF09190 DALR_2: DALR domain; 99.5 2.9E-14 6.3E-19 97.7 6.8 57 75-138 1-57 (63)
14 smart00840 DALR_2 This DALR do 99.3 5.1E-12 1.1E-16 84.2 5.8 55 75-135 1-55 (56)
15 cd07955 Anticodon_Ia_Cys_like 99.1 6.4E-10 1.4E-14 79.9 8.1 77 32-135 2-81 (81)
16 PRK11893 methionyl-tRNA synthe 98.4 3.9E-06 8.4E-11 79.3 13.3 99 8-108 316-428 (511)
17 PRK00390 leuS leucyl-tRNA synt 98.3 8.2E-06 1.8E-10 81.3 12.0 96 8-105 587-687 (805)
18 TIGR00395 leuS_arch leucyl-tRN 98.1 2.9E-05 6.4E-10 78.6 12.3 97 8-106 637-740 (938)
19 TIGR00396 leuS_bact leucyl-tRN 98.1 2.5E-05 5.5E-10 78.2 10.3 95 8-104 621-725 (842)
20 PRK13208 valS valyl-tRNA synth 98.0 2.2E-05 4.7E-10 78.3 8.8 97 8-106 550-656 (800)
21 PLN02843 isoleucyl-tRNA synthe 97.9 4.8E-05 1E-09 77.3 9.3 97 8-106 637-746 (974)
22 PRK12300 leuS leucyl-tRNA synt 97.8 0.00023 4.9E-09 72.0 11.5 98 8-107 594-695 (897)
23 TIGR00398 metG methionyl-tRNA 97.6 0.00055 1.2E-08 65.2 11.1 99 8-108 344-456 (530)
24 PLN02943 aminoacyl-tRNA ligase 97.6 0.00035 7.5E-09 71.1 9.5 97 8-106 600-721 (958)
25 PRK13804 ileS isoleucyl-tRNA s 97.6 0.00032 7E-09 71.3 9.2 97 8-106 647-757 (961)
26 PRK05743 ileS isoleucyl-tRNA s 97.5 0.00027 5.8E-09 71.6 7.9 97 8-106 609-719 (912)
27 PRK12267 methionyl-tRNA synthe 97.5 0.00088 1.9E-08 65.4 10.6 99 8-108 316-428 (648)
28 PRK12268 methionyl-tRNA synthe 97.3 0.0048 1E-07 59.1 13.2 98 8-107 351-461 (556)
29 PRK00133 metG methionyl-tRNA s 97.2 0.0066 1.4E-07 59.7 13.7 98 8-107 346-454 (673)
30 TIGR00456 argS arginyl-tRNA sy 97.2 0.0032 7E-08 60.6 10.8 126 11-138 415-563 (566)
31 PLN02224 methionine-tRNA ligas 97.2 0.0039 8.5E-08 60.6 11.0 98 8-107 383-494 (616)
32 PRK06039 ileS isoleucyl-tRNA s 97.1 0.0028 6.1E-08 64.7 9.4 96 8-105 609-721 (975)
33 cd07956 Anticodon_Ia_Arg Antic 97.1 0.021 4.5E-07 45.6 12.7 126 11-138 5-153 (156)
34 PLN02610 probable methionyl-tR 97.0 0.011 2.5E-07 59.0 13.1 98 9-108 367-484 (801)
35 PRK01611 argS arginyl-tRNA syn 97.0 0.0063 1.4E-07 57.8 10.4 125 12-138 360-504 (507)
36 PLN02882 aminoacyl-tRNA ligase 96.9 0.0088 1.9E-07 62.1 11.9 98 8-107 631-752 (1159)
37 TIGR00392 ileS isoleucyl-tRNA 96.9 0.0051 1.1E-07 62.1 9.3 97 8-106 628-741 (861)
38 TIGR00422 valS valyl-tRNA synt 96.8 0.0059 1.3E-07 61.6 9.1 97 8-106 542-651 (861)
39 PRK05729 valS valyl-tRNA synth 96.7 0.016 3.5E-07 58.6 11.4 97 8-106 537-647 (874)
40 PRK12451 arginyl-tRNA syntheta 96.6 0.011 2.5E-07 56.8 9.3 125 12-138 417-559 (562)
41 TIGR00467 lysS_arch lysyl-tRNA 96.6 0.0028 6E-08 60.3 5.0 39 9-48 292-332 (515)
42 PRK14900 valS valyl-tRNA synth 96.5 0.015 3.2E-07 60.0 9.6 97 8-106 555-666 (1052)
43 COG0060 IleS Isoleucyl-tRNA sy 96.2 0.047 1E-06 55.2 11.1 93 8-102 619-724 (933)
44 COG0143 MetG Methionyl-tRNA sy 95.9 0.16 3.5E-06 48.9 12.7 99 8-108 350-463 (558)
45 KOG2007 Cysteinyl-tRNA synthet 95.0 0.03 6.5E-07 52.5 4.4 53 161-213 525-577 (586)
46 PLN02563 aminoacyl-tRNA ligase 94.6 0.26 5.6E-06 50.5 10.3 94 8-103 740-842 (963)
47 PTZ00427 isoleucine-tRNA ligas 94.2 0.4 8.7E-06 50.3 10.7 90 8-99 737-848 (1205)
48 PLN02286 arginine-tRNA ligase 94.0 0.86 1.9E-05 44.2 12.0 126 11-138 427-573 (576)
49 cd07958 Anticodon_Ia_Leu_BEm A 93.8 1.6 3.4E-05 32.1 10.8 42 65-108 43-84 (117)
50 KOG0436 Methionyl-tRNA synthet 93.2 0.33 7.1E-06 45.0 7.1 129 8-138 361-511 (578)
51 PTZ00419 valyl-tRNA synthetase 92.4 0.84 1.8E-05 47.0 9.8 97 8-106 639-755 (995)
52 COG0495 LeuS Leucyl-tRNA synth 91.8 1.8 3.9E-05 43.6 10.8 98 8-107 596-697 (814)
53 PLN02381 valyl-tRNA synthetase 91.5 1.4 3E-05 45.9 10.0 89 8-98 709-810 (1066)
54 COG0018 ArgS Arginyl-tRNA synt 89.5 8.5 0.00018 37.4 12.9 125 12-138 426-574 (577)
55 cd07375 Anticodon_Ia_like Anti 88.5 6.2 0.00013 28.5 9.1 40 65-106 44-83 (117)
56 PRK00750 lysK lysyl-tRNA synth 86.6 0.96 2.1E-05 43.2 4.5 36 9-46 298-336 (510)
57 PLN02959 aminoacyl-tRNA ligase 85.5 3.8 8.3E-05 42.7 8.5 91 8-100 735-833 (1084)
58 cd07962 Anticodon_Ia_Val Antic 85.4 5.3 0.00011 30.6 7.5 77 29-107 1-89 (135)
59 cd07959 Anticodon_Ia_Leu_AEc A 84.2 14 0.0003 27.0 9.3 40 65-106 40-80 (117)
60 cd07957 Anticodon_Ia_Met Antic 84.0 9.8 0.00021 28.2 8.3 43 63-107 39-81 (129)
61 COG0525 ValS Valyl-tRNA synthe 82.6 8.9 0.00019 39.0 9.3 89 8-98 542-641 (877)
62 PF02151 UVR: UvrB/uvrC motif; 78.3 5.5 0.00012 23.7 4.0 30 163-192 3-32 (36)
63 PF05746 DALR_1: DALR anticodo 77.9 18 0.0004 26.7 7.9 58 80-138 52-116 (119)
64 KOG0435 Leucyl-tRNA synthetase 75.5 26 0.00057 34.7 9.8 97 8-105 634-743 (876)
65 cd00674 LysRS_core_class_I cat 71.7 9.5 0.00021 34.8 5.6 27 9-35 293-320 (353)
66 PF11430 EGL-1: Programmed cel 61.1 2.4 5.1E-05 22.2 -0.2 10 77-86 7-16 (21)
67 KOG1247 Methionyl-tRNA synthet 60.4 1.4E+02 0.0031 28.1 10.8 101 6-108 359-472 (567)
68 smart00836 DALR_1 DALR anticod 59.4 70 0.0015 23.7 9.5 67 70-138 46-119 (122)
69 cd07960 Anticodon_Ia_Ile_BEm A 59.2 72 0.0016 25.5 8.1 76 29-106 1-90 (180)
70 smart00874 B5 tRNA synthetase 57.6 21 0.00045 24.0 4.0 41 183-223 21-64 (71)
71 PRK04156 gltX glutamyl-tRNA sy 56.2 14 0.00031 35.8 3.9 30 8-37 371-401 (567)
72 KOG0433 Isoleucyl-tRNA synthet 44.0 84 0.0018 31.7 7.0 88 9-98 637-736 (937)
73 PHA02754 hypothetical protein; 41.8 29 0.00062 23.2 2.4 26 175-200 11-37 (67)
74 PF01921 tRNA-synt_1f: tRNA sy 41.1 24 0.00051 32.3 2.7 29 9-37 300-329 (360)
75 PF00512 HisKA: His Kinase A ( 34.5 1.2E+02 0.0026 19.6 4.8 27 73-102 2-28 (68)
76 PF03484 B5: tRNA synthetase B 33.0 61 0.0013 21.9 3.2 41 182-223 20-63 (70)
77 PF06579 Ly-6_related: Caenorh 31.0 18 0.0004 28.1 0.3 18 15-32 9-27 (129)
78 COG0128 AroA 5-enolpyruvylshik 30.5 39 0.00084 31.7 2.4 29 180-208 338-369 (428)
79 PF08847 DUF1817: Domain of un 29.7 33 0.00072 27.3 1.5 18 2-19 93-110 (150)
80 PF08264 Anticodon_1: Anticodo 27.8 1.7E+02 0.0037 22.2 5.4 37 68-106 7-45 (153)
81 PF07530 PRE_C2HC: Associated 24.5 55 0.0012 22.4 1.7 18 183-200 1-18 (68)
82 PF01996 F420_ligase: F420-0:G 24.0 41 0.00089 28.7 1.2 29 180-209 133-166 (228)
83 cd04885 ACT_ThrD-I Tandem C-te 23.2 69 0.0015 21.3 2.0 21 179-199 48-68 (68)
84 PF01535 PPR: PPR repeat; Int 21.9 1.1E+02 0.0024 15.9 2.5 21 175-195 11-31 (31)
85 PF05972 APC_15aa: APC 15 resi 21.8 36 0.00078 16.6 0.3 8 24-31 3-10 (16)
86 TIGR00090 iojap_ybeB iojap-lik 21.8 84 0.0018 23.0 2.4 32 181-212 45-78 (99)
87 PF13812 PPR_3: Pentatricopept 21.8 1.2E+02 0.0026 16.3 2.6 21 176-196 13-33 (34)
88 PF08068 DKCLD: DKCLD (NUC011) 20.6 62 0.0013 21.7 1.3 18 188-205 37-54 (59)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-36 Score=276.30 Aligned_cols=173 Identities=27% Similarity=0.365 Sum_probs=131.0
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
+|+|++||||||++|||+|||||++.|++| .+++|++++..+...... . . .. .......+|++||+||||
T Consensus 285 ~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~---~--~--~~-~~~~~~~~f~~al~DDfn 356 (464)
T COG0215 285 KYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD---A--E--LA-DLKEFEARFREALDDDFN 356 (464)
T ss_pred hcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc---c--c--cc-hhHHHHHHHHHHHHhccC
Confidence 489999999999999999999999999999 678888887665522111 0 0 00 235667789999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHcccc-----CCCCCCchHHHHHHHHHHHHHHhhhc
Q 037974 86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLG-----LLPEGSTYSEVLQQLKDKALKRAELA 160 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLG-----l~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (233)
||.|+++ |+++++.+|........ ....+...+..++.+|| +.+.. .. ......
T Consensus 357 t~~al~~-l~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~l~~~~~~--~~-----------~~~~~~ 415 (464)
T COG0215 357 TPKALAV-LFELAKEINRLLEEGKS-------DAKAVLSALKALLAILGLKVLGLFPQS--GA-----------QEDESD 415 (464)
T ss_pred cHHHHHH-HHHHHHHHhhhhhcccc-------chHHHHHHHHHHHHHhCchhhcccccc--cc-----------ccccch
Confidence 9999999 99999999887654321 11122344444444444 44321 00 011124
Q ss_pred HHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974 161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC 209 (233)
Q Consensus 161 ~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~ 209 (233)
.+.|+.||++|.+||++|||++||+|||+|.++||+|+|+|+||+|++.
T Consensus 416 ~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~gt~w~~~ 464 (464)
T COG0215 416 DEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDGTTWRRK 464 (464)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCCeEEEeC
Confidence 6889999999999999999999999999999999999999999999863
No 2
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=5.6e-35 Score=274.13 Aligned_cols=206 Identities=40% Similarity=0.593 Sum_probs=143.8
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC----CCCChhHHHHHHHHHHHHHHHHh
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS----GSITPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~f~~AL~ 81 (233)
+|+|+++|||||++|||+|++||++.|.+| .+.++..++..+......... ..........+..+...|.+||+
T Consensus 340 ~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~ 419 (557)
T PLN02946 340 LYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMS 419 (557)
T ss_pred hcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999 455666665555332221100 01111122344567789999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhc
Q 037974 82 DDLNTSHILTGAFLDALKFINNSKKQPKQ-QQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELA 160 (233)
Q Consensus 82 DDlNTp~Al~~~L~~lv~~iN~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (233)
||||||.|+++ ||++++.+|+.++.... ........+..+...+..++.||||.... ...++............+.
T Consensus 420 DDlntp~Al~~-l~~~vk~~N~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLGl~~~~--~~~~~~~~~~~~~~~~~~~ 496 (557)
T PLN02946 420 DDLHTPVALAA-LSEPLKTINDLLHTRKGKKQEKRLESLAALEKKIRDVLSVLGLMPTS--YSEALQQLREKALRRAKLT 496 (557)
T ss_pred hccChHHHHHH-HHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHcCCCchh--hhhhhhhhhhhhhhcccCC
Confidence 99999999999 99999999998754210 00001123445667788889999996421 1111110000000011122
Q ss_pred HHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEecCccchhh
Q 037974 161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVEQEQ 216 (233)
Q Consensus 161 ~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~~~~~~~~ 216 (233)
++.|+.||+.|++||++|||++||+||++|.++||.|+|||+||+|++.-|-.+|.
T Consensus 497 ~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~~Gt~w~~~~~~~~~~ 552 (557)
T PLN02946 497 EEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQE 552 (557)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECCCCceEEEcCCCcccc
Confidence 35699999999999999999999999999999999999999999999986655443
No 3
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-32 Score=252.62 Aligned_cols=179 Identities=23% Similarity=0.270 Sum_probs=131.3
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc----C----C-C--CChhHHHHHHHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR----S----G-S--ITPAAEDCIKKLRDE 75 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~----~----~-~--~~~~~~~~~~~~~~~ 75 (233)
|+|+++||+||++|||+|++||++.|.+| .+.+|.+++..+........ . . . ........+..+...
T Consensus 298 ~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (490)
T PRK14536 298 FQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTD 377 (490)
T ss_pred CCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHH
Confidence 89999999999999999999999999999 67888887766643221100 0 0 0 001111234567789
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHH
Q 037974 76 FYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALK 155 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~ 155 (233)
|.+||+||||||.|+++ ||++++.+|.. . ..+...+..+.+||||.... ........ ..
T Consensus 378 f~~al~dDlntp~Al~~-l~~~~~~~n~~---~-----------~~~~~~~~~~~~vLGl~~~~-~~~~~~~~-----~~ 436 (490)
T PRK14536 378 FRAALEDDFSTPKALSE-LQKLVKDTSVP---P-----------SLCLSVLQAMDTVLGLGLIQ-EATASLSA-----QV 436 (490)
T ss_pred HHHHHHhcCChHHHHHH-HHHHHHHhhhh---H-----------HHHHHHHHHHHhhcCccccc-chhhhhhh-----cc
Confidence 99999999999999999 99999999862 1 11345677788999995210 01111000 00
Q ss_pred HhhhcHHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEe
Q 037974 156 RAELAENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 156 ~~~~~~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~ 208 (233)
.....++.|+.||+.|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 437 ~~~~~~~~i~~li~~R~~aR~~kdf~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 489 (490)
T PRK14536 437 PAGPSEEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGIELEDTHLGTIWKR 489 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCCceEEe
Confidence 00111346999999999999999999999999999999999999999999986
No 4
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-32 Score=258.32 Aligned_cols=173 Identities=23% Similarity=0.307 Sum_probs=129.8
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
+|+|+++|||||++|||+|++||++.|++| .++++..+...+... . ......+..+...|.+||+||||
T Consensus 525 ~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-----~----~~~~~~l~~~~~~f~~AL~DDln 595 (699)
T PRK14535 525 QYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-----E----FMLSENVNDYTRRFYAAMNDDFG 595 (699)
T ss_pred hCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc-----c----chhhhhHHHHHHHHHHHHhhccC
Confidence 489999999999999999999999999999 566666555433210 0 01111345677899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHH
Q 037974 86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVL 165 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (233)
||.|+++ ||++++.+|+... ..+...+..++.||||.... ...+.... . ....+.++.|+
T Consensus 596 tp~Ala~-L~~lvk~iN~~~~-------------~~~~~~l~~~~~vLGl~~~~--~~~~~~~~---~-~~~~~~~~~i~ 655 (699)
T PRK14535 596 TVEAVAV-LFELAGEVNKTND-------------AQLAGCLKALGGIIGLLQRD--PTEFLQGG---A-ASDGLSNEEIE 655 (699)
T ss_pred hHHHHHH-HHHHHHHHHHHHH-------------HHHHHHHHHHHhhcCCCccc--hhhhhhcc---c-ccccCCHHHHH
Confidence 9999999 9999999997521 01234466778899996431 22221100 0 00122245699
Q ss_pred HHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974 166 HLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC 209 (233)
Q Consensus 166 ~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~ 209 (233)
.||+.|++||++|||++||+||++|.++||.|+|||+||+|++.
T Consensus 656 ~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI~veDt~~Gt~W~~~ 699 (699)
T PRK14535 656 DLIARRKQARADKNWAESDRIRDLLNEHKIILEDNAGGTTWRRG 699 (699)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCCceEeeC
Confidence 99999999999999999999999999999999999999999863
No 5
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.2e-32 Score=250.33 Aligned_cols=179 Identities=26% Similarity=0.339 Sum_probs=139.4
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
.|+|+++||+||++|||+|++||++.|.+| .+++|.++...+.. ...+......+..+..+|.+||+||||
T Consensus 283 ~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-------~~~d~~~~~~l~~~~~~~~~al~ddln 355 (463)
T PRK00260 283 KYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETAL-------GEDDEALLAELEEFKERFIEAMDDDFN 355 (463)
T ss_pred HcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-------ccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 488999999999999999999999999998 56777776655531 111222333456778899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHH
Q 037974 86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVL 165 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (233)
||.|++. |+++++.+|.++.... ...+..+...+..+++||||.... ..... .......++.|+
T Consensus 356 ~~~Al~~-l~~lv~~~n~~~~~~~------~~~~~~~~~~~~~~~~ilG~~~~~--~~~~~-------~~~~~~~~~~~~ 419 (463)
T PRK00260 356 TPEALAV-LFELAREINRALETKD------KEAAAALAALLRALADVLGLEQDE--EALFE-------AAADELLDAEIE 419 (463)
T ss_pred HHHHHHH-HHHHHHHHHHHhhccc------HHHHHHHHHHHHHHHHhcCCCchh--hhhhh-------cccccccHHHHH
Confidence 9999999 9999999999876531 233555678888899999995321 00000 000112346799
Q ss_pred HHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974 166 HLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC 209 (233)
Q Consensus 166 ~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~ 209 (233)
.|++.|++||++|||++||+||++|.++||.|+|+|+||+|++.
T Consensus 420 ~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~~G~~w~~~ 463 (463)
T PRK00260 420 ALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDGTTWRRK 463 (463)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCceEEeC
Confidence 99999999999999999999999999999999999999999863
No 6
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.98 E-value=1.9e-31 Score=246.87 Aligned_cols=178 Identities=24% Similarity=0.255 Sum_probs=124.0
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhc-hhHh-h--hcCCCCChhHHHHHHHHHHHHHHHHhh
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALS-PFQE-D--ARSGSITPAAEDCIKKLRDEFYTRMSD 82 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~-~~~~-~--~~~~~~~~~~~~~~~~~~~~f~~AL~D 82 (233)
|+|+++||+||++|||+|++||++.|++| .+++|.++...+. .+.. . ................+...|.+||+|
T Consensus 298 ~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~D 377 (481)
T PRK14534 298 FSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAF 377 (481)
T ss_pred CChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999 5666665544331 1110 0 000000000001123566789999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHH
Q 037974 83 DLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAEN 162 (233)
Q Consensus 83 DlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (233)
|||||.|+++ ||++++.+|+.. . .. .. +...+..++. ||+.... ... +. ......++
T Consensus 378 DlNtp~Al~~-l~~~~k~~n~~~--~------~~--~~-~~~~~~~~~~-lg~~~~~--~~~-~~-------~~~~~~~~ 434 (481)
T PRK14534 378 DLNIPQGLAL-LWDIIKDDNLSF--L------SK--LR-LAFKFDEVLS-LGLREEI--LRE-IE-------NHRIVIDD 434 (481)
T ss_pred cCChHHHHHH-HHHHHHHHHHhh--h------hH--HH-HHHHHHHHHh-CCCCccc--chh-hc-------cccccCHH
Confidence 9999999999 999999999741 0 01 11 2234555665 8874220 000 00 00011235
Q ss_pred HHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974 163 DVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC 209 (233)
Q Consensus 163 ~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~ 209 (233)
.|+.||++|++||++|||++||+||++|.++||.|+|||+||+|+++
T Consensus 435 ~i~~li~~R~~aR~~Kd~~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~~ 481 (481)
T PRK14534 435 NMKSLIEERRLAKCEKDFKRADEIREYFASKGFVLIDTEEGTKVKRG 481 (481)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHCCCEEEEcCCCCEEEeC
Confidence 69999999999999999999999999999999999999999999864
No 7
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.98 E-value=1e-31 Score=249.94 Aligned_cols=181 Identities=28% Similarity=0.322 Sum_probs=132.1
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
.|+|+++|||||++|||+|++||++.|++| .+++|.++...+...... ..............+...|.+||+||||
T Consensus 282 ~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~al~dDln 359 (465)
T TIGR00435 282 NYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAY--SGNQSLNKFPDEKEFEARFVEAMDDDLN 359 (465)
T ss_pred HCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccchhHHHHHHHHHHHHhhccC
Confidence 388999999999999999999999999999 677887777665432111 0000100111234567899999999999
Q ss_pred cHHHHHHHHHHHHHHHH-hhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHH
Q 037974 86 TSHILTGAFLDALKFIN-NSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDV 164 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 164 (233)
||.|+++ ||++++.+| ..+.. ..+..+...+..+..|||+.... ...+... + ........|
T Consensus 360 t~~a~~~-l~~~~~~~n~~~~~~---------~~~~~~~~~~~~l~~~lg~~~~~--~~~~~~~--~----~~~~~~~~i 421 (465)
T TIGR00435 360 TANALAV-LFELAKSINLTFVSK---------ADAALLIEHLIFLESRLGLLLGL--PSKPVQA--G----SNDDELGEI 421 (465)
T ss_pred HHHHHHH-HHHHHHHhhhhhcch---------HHHHHHHHHHHHHHHhcccCccc--cchhccc--c----cccccHHHH
Confidence 9999999 999999999 44321 11333556778888999985221 1111100 0 000001359
Q ss_pred HHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEe
Q 037974 165 LHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 165 ~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~ 208 (233)
..|++.|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 422 ~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~~gt~w~~ 465 (465)
T TIGR00435 422 EALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQGTTWRR 465 (465)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECCCCceeeC
Confidence 99999999999999999999999999999999999999999974
No 8
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.97 E-value=2e-29 Score=242.12 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=146.5
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC------CCCChhHHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS------GSITPAAEDCIKKLRDEFYTR 79 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~f~~A 79 (233)
+|+|++||||||++||++|+|||++.|.++ ..+++.+++.++......... .+.+..+...+..+...|.+|
T Consensus 332 kygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~A 411 (651)
T PTZ00399 332 KYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAA 411 (651)
T ss_pred HcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999988 456677776666433221100 011122344566788999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhh
Q 037974 80 MSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAEL 159 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (233)
|+||||||.|++. |++|++.+|.++.... ......+..+..+|..+++||||.... ..+... +.. .....
T Consensus 412 m~Ddfnt~~Al~~-L~eLv~~~N~yi~~~~---~~~~~ll~~v~~~l~~~l~ILGl~~~~---~m~~~~--~~~-~~~~~ 481 (651)
T PTZ00399 412 LLDNFDTPEALQA-LQKLISATNTYLNSGE---QPSAPLLRSVAQYVTKILSIFGLVEGS---DGLGSQ--GQN-STSEN 481 (651)
T ss_pred HHhcCCHHHHHHH-HHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHhcccCCcch---hhcccc--ccc-cchhh
Confidence 9999999999999 9999999999986321 123445666788999999999996431 110000 000 00111
Q ss_pred cHHHHHHHHHHHHHHHh----C-----------CChhhhHHHHH-HhHhCCcEEeecCCC-eeEEecCccch
Q 037974 160 AENDVLHLIEERATAKK----N-----------KDFSKSDQIRA-DLTRKGIALMDVRKE-TIWRPCVPVEQ 214 (233)
Q Consensus 160 ~~~~i~~Li~~R~~aRk----~-----------Kdf~~AD~IRd-~L~~~GI~l~D~~~G-t~w~~~~~~~~ 214 (233)
..+.|+.|++.|.++|+ + |+|++||+||| .|.++||.|+|+++| |.|++.++.+|
T Consensus 482 ~~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~ 553 (651)
T PTZ00399 482 FKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEEL 553 (651)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHH
Confidence 23569999999999994 5 88999999999 599999999999999 69999999987
No 9
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.96 E-value=1.4e-27 Score=192.12 Aligned_cols=154 Identities=26% Similarity=0.336 Sum_probs=111.3
Q ss_pred HHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 31 IPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 31 ~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
++.|++| .+.++.++...+. .. ... ...+..+...|++||+||||||.||++ ||++++.+|+++...
T Consensus 1 ~e~L~~A~~~l~rl~~~~~~l~-~~----~~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~~~~ 69 (156)
T cd07963 1 DDNLEDARAALERLYTALRGVP-PT----TVD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLKKED 69 (156)
T ss_pred ChHHHHHHHHHHHHHHHHHhhH-hc----ccc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHhccc
Confidence 3678888 6788887776653 10 000 012345678999999999999999999 999999999887542
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCCChhhhHHHHH
Q 037974 109 KQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVLHLIEERATAKKNKDFSKSDQIRA 188 (233)
Q Consensus 109 ~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aRk~Kdf~~AD~IRd 188 (233)
. . .+..+...+..++.||||.... ...++.. .+ ...+...+.|..|+++|.+||++|||++||+||+
T Consensus 70 ~-----~--~~~~~~~~l~~~~~vLGl~~~~--~~~~~~~-~~---~~~~~~~~~v~~Ll~~R~~aR~~Kdf~~AD~IRd 136 (156)
T cd07963 70 I-----E--KAAALAALLKALGGVLGLLQQD--PEAFLQG-GT---GEGGLSVAEIEALIAQRNQARKAKDWAEADRIRD 136 (156)
T ss_pred h-----H--HHHHHHHHHHHHHhccCCCCCC--HHHHHhc-cc---cccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 1 2444556788889999995431 1222110 00 0001123469999999999999999999999999
Q ss_pred HhHhCCcEEeecCCCeeEEe
Q 037974 189 DLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 189 ~L~~~GI~l~D~~~Gt~w~~ 208 (233)
+|.++||.|+|||+||+|++
T Consensus 137 ~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 137 ELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHCCcEEEECCCCceeeC
Confidence 99999999999999999974
No 10
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.5e-24 Score=197.10 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=141.2
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC----CCCChhHHHHHHHHHHHHHHHHh
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS----GSITPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~f~~AL~ 81 (233)
+|||++||++||+++||+|||||++.|..| ..+.+.+|+..++.+...... .+.+.++...+.....+|+.|++
T Consensus 322 ~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~ 401 (586)
T KOG2007|consen 322 KYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALC 401 (586)
T ss_pred hcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHH
Confidence 699999999999999999999999999999 567888888777666543111 11123455566788899999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcH
Q 037974 82 DDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAE 161 (233)
Q Consensus 82 DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
|||+||.++.. +.+|++..|.++..... ......+..+..++..++.|||+.... ..... ......
T Consensus 402 d~~dT~~v~~~-~~~lvs~~N~~i~~~~~--~~~~~~L~~I~~yIt~~l~ifG~~e~~-g~q~~----------~e~~~m 467 (586)
T KOG2007|consen 402 DNFDTPRVMEA-IRELVSQGNAYIRESGE--RPNSALLKAIASYITKLLKIFGLSEGK-GQQYV----------LEATVM 467 (586)
T ss_pred hccccHHHHHH-HHHHHhhhhHHHHHhcc--ccchHHHHHHHHHHHHHHHHhCCCccc-ccccc----------cccchh
Confidence 99999999999 99999999998865431 123467888999999999999998531 10000 011123
Q ss_pred HHHHHHHHHHHHHH----hCC---ChhhhHHHHHH-hHhCCcEEeecCCCeeEEecCc
Q 037974 162 NDVLHLIEERATAK----KNK---DFSKSDQIRAD-LTRKGIALMDVRKETIWRPCVP 211 (233)
Q Consensus 162 ~~i~~Li~~R~~aR----k~K---df~~AD~IRd~-L~~~GI~l~D~~~Gt~w~~~~~ 211 (233)
..+..|++.|...| +.+ -.++||.|||. |.++|+.|+|.+ |++|++...
T Consensus 468 ~~v~~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~lvk~v~ 524 (586)
T KOG2007|consen 468 PYVQSLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GSTLVKAVD 524 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chHHHHHhh
Confidence 45666666555544 443 36899999987 999999999999 887766643
No 11
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.65 E-value=2.9e-16 Score=142.59 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=67.7
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCc
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNT 86 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNT 86 (233)
|+|+++|||||++|||+||+||++.|++| .++++.++..... . . .+..+.+.|.+||+|||||
T Consensus 280 ~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~--------~--~-----~~~~~~~~f~~al~dDlnt 344 (384)
T PRK12418 280 VDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAALPA--------G--P-----DAADVVARVRAALADDLDT 344 (384)
T ss_pred CChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhccc--------c--c-----hHHHHHHHHHHHHHhcCCh
Confidence 78999999999999999999999999998 4555555543211 0 0 1234578899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 037974 87 SHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 87 p~Al~~~L~~lv~~iN~~~~~ 107 (233)
|.|++. ||++++.+|.++..
T Consensus 345 ~~a~~~-l~~~~~~~n~~~~~ 364 (384)
T PRK12418 345 PGALAA-VDGWATDALEGGGD 364 (384)
T ss_pred HHHHHH-HHHHHHHHHhccCC
Confidence 999999 99999999998743
No 12
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.62 E-value=8.6e-16 Score=140.36 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=66.4
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCc
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNT 86 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNT 86 (233)
|+|+++|||||++|||+|++||++.|++| .++++.++...+. . . .+..+...|.+||+|||||
T Consensus 307 ~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~~--------~--~-----~~~~~~~~~~~al~dDln~ 371 (411)
T TIGR03447 307 VDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATD--------A--P-----DATDLIARLRQHLANDLDT 371 (411)
T ss_pred CCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhcc--------c--c-----hHHHHHHHHHHHHHhcCCh
Confidence 78999999999999999999999999998 4555555543221 0 0 1234567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 037974 87 SHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 87 p~Al~~~L~~lv~~iN~~~~ 106 (233)
|.|++. ||++++.+|..-.
T Consensus 372 p~a~~~-l~~~~~~~n~~~~ 390 (411)
T TIGR03447 372 PAALAA-VDNWAAAALSSGG 390 (411)
T ss_pred HHHHHH-HHHHHHHHHhcCC
Confidence 999999 9999999998643
No 13
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=99.52 E-value=2.9e-14 Score=97.72 Aligned_cols=57 Identities=37% Similarity=0.533 Sum_probs=44.5
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+|.+||+||||||.||++ ||++++.+|+..... +...+..+...+..+.+||||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~------~~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESN------DKEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccC------CHHHHHHHHHHHHHHHhcCcCCCC
Confidence 599999999999999999 999999999943332 344456667889999999999766
No 14
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=99.30 E-value=5.1e-12 Score=84.18 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=44.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGL 135 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl 135 (233)
+|++||+||||||.|+++ |+++++.+|+++.... ....+..+..++..++++||+
T Consensus 1 ~f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~-----~~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 1 RFEEAMDDDFNTPEALAV-LFELAREINRLLLKAV-----DAEELAALAALLRALGGVLGL 55 (56)
T ss_pred ChHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc-----CHHHHHHHHHHHHHHHhccCC
Confidence 389999999999999999 9999999999874321 122345567788889999997
No 15
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=99.08 E-value=6.4e-10 Score=79.94 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=53.2
Q ss_pred HHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH-HhhcCCc
Q 037974 32 PQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFI-NNSKKQP 108 (233)
Q Consensus 32 e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~i-N~~~~~~ 108 (233)
+.|++| .+++|+++...+. .. .+..+..+|++||+||||||.|+++ ||++++.+ |..-...
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~--------~~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~~~~~~ 65 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD--------GP-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSRGGTDP 65 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--------cc-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhcCCCCc
Confidence 567777 5666666654432 01 1235678999999999999999999 99999998 7753322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHccccC
Q 037974 109 KQQQLSLIESLLKIENEVKVVLDVLGL 135 (233)
Q Consensus 109 ~~~~~~~~~~l~~~~~~l~~~~~vLGl 135 (233)
. ......+.+..+||+
T Consensus 66 ~-----------~~~~~~~~~~~~~~~ 81 (81)
T cd07955 66 D-----------APALVRTAVDALLGV 81 (81)
T ss_pred c-----------cHHHHHHHHHHHcCC
Confidence 1 123455667778885
No 16
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=98.42 E-value=3.9e-06 Score=79.31 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhh-cC--------CCCChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN----ETITLQDCEVALSPFQEDA-RS--------GSITPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~ 73 (233)
.|+++++||+|+++ +|+++++||++.+.++ ....+.++...+....... .+ ...+..+...+..+.
T Consensus 316 ~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~ 395 (511)
T PRK11893 316 EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALL 395 (511)
T ss_pred HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHHHHH
Confidence 37899999999987 9999999999999766 1234444333222211110 00 011122344566778
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
..+.++| |+|+++.|+.. |+++++..|.++...
T Consensus 396 ~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~ 428 (511)
T PRK11893 396 ERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQ 428 (511)
T ss_pred HHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhC
Confidence 8999999 99999999999 999999999987643
No 17
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.27 E-value=8.2e-06 Score=81.33 Aligned_cols=96 Identities=8% Similarity=-0.089 Sum_probs=69.6
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc--CCCCChhHHHHHHHHHHHHHHHHhh
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR--SGSITPAAEDCIKKLRDEFYTRMSD 82 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~AL~D 82 (233)
+|+++++||++++ +||+++++||++.|.++ .+++|.++............ ....+..+...+..+...+.++|+
T Consensus 587 ~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e- 665 (805)
T PRK00390 587 KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDVAALSEDKELRRKLHKTIKKVTEDIE- 665 (805)
T ss_pred HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcccChhhHHHHHHHHHHHHHHHHHHH-
Confidence 5899999999987 69999999999999988 45666665544111000000 001122344556778889999997
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhc
Q 037974 83 DLNTSHILTGAFLDALKFINNSK 105 (233)
Q Consensus 83 DlNTp~Al~~~L~~lv~~iN~~~ 105 (233)
+|++..|++. |++++..++++.
T Consensus 666 ~~~f~~ai~~-l~~f~n~lsk~~ 687 (805)
T PRK00390 666 RLRFNTAIAA-LMELVNALYKAE 687 (805)
T ss_pred cCCHHHHHHH-HHHHHHHHHHHH
Confidence 5999999999 999999888864
No 18
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=98.11 E-value=2.9e-05 Score=78.61 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=68.2
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC---CCCChhHHHHHHHHHHHHHHHHh
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS---GSITPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~AL~ 81 (233)
+|+++++||+|+++ +|++++|||++.+.++ .+.++.++...+........+ ...+..+...+..+...+.++|+
T Consensus 637 ~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~D~wlls~l~~~i~~v~~a~e 716 (938)
T TIGR00395 637 KFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESNLETGEETSFIDRWLESRMNAAIKETYEAME 716 (938)
T ss_pred HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999987 9999999999999888 344444443332111100000 01112234456677788999996
Q ss_pred hccCcHHHH-HHHHHHHHHHHHhhcC
Q 037974 82 DDLNTSHIL-TGAFLDALKFINNSKK 106 (233)
Q Consensus 82 DDlNTp~Al-~~~L~~lv~~iN~~~~ 106 (233)
+|+++.|+ .. +++++..+|.++.
T Consensus 717 -~~~~~~Al~~~-l~~~~~~~n~Yl~ 740 (938)
T TIGR00395 717 -NFQTRKAVKYA-LFDLQADVDWYRR 740 (938)
T ss_pred -ccCHHHHHHHH-HHHHHHHHHHHHH
Confidence 89999999 88 9999999998765
No 19
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.05 E-value=2.5e-05 Score=78.21 Aligned_cols=95 Identities=5% Similarity=-0.063 Sum_probs=64.7
Q ss_pred CCChHHHHHHhc-cCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh---c-C--CCCChhHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLL-DIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDA---R-S--GSITPAAEDCIKKLRDEFYT 78 (233)
Q Consensus 8 ~~~p~~lR~~~L-stHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~---~-~--~~~~~~~~~~~~~~~~~f~~ 78 (233)
+|+++++||++| ++||+++++||++.|+.+ .+++|.++...+....... . . ...+..+...+..+...+.+
T Consensus 621 ~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~ 700 (842)
T TIGR00396 621 KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTE 700 (842)
T ss_pred HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 588999999999 579999999999999988 5677777655432111100 0 0 01122344456677888999
Q ss_pred HHhh-ccCcHHHHHHHHHHHHHHHHhh
Q 037974 79 RMSD-DLNTSHILTGAFLDALKFINNS 104 (233)
Q Consensus 79 AL~D-DlNTp~Al~~~L~~lv~~iN~~ 104 (233)
+|++ + .+..|+++ |++++..+.++
T Consensus 701 ~~e~y~-~fn~ai~~-l~~f~n~L~~~ 725 (842)
T TIGR00396 701 DLEKLE-SFNTAISA-MMILLNALYKA 725 (842)
T ss_pred HHHhhh-hHHHHHHH-HHHHHHHHHhh
Confidence 9986 4 14448999 99999766553
No 20
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.00 E-value=2.2e-05 Score=78.33 Aligned_cols=97 Identities=8% Similarity=-0.056 Sum_probs=69.6
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc-C--C---CCChhHHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR-S--G---SITPAAEDCIKKLRDEFYTR 79 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~-~--~---~~~~~~~~~~~~~~~~f~~A 79 (233)
+|+++++||+++++||+++++||++.+..+ .+++|.++...+........ . . ..+..+...+..+...+.++
T Consensus 550 ~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~ 629 (800)
T PRK13208 550 KYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEA 629 (800)
T ss_pred HcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999887 56777776544332111000 0 0 01122344566778899999
Q ss_pred HhhccCcHHHHHHHHHHHHHH--HHhhcC
Q 037974 80 MSDDLNTSHILTGAFLDALKF--INNSKK 106 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~~--iN~~~~ 106 (233)
|+ +++++.|++. |++++.. .|.|+.
T Consensus 630 ~e-~~~f~~A~~~-i~~f~~~~~~n~Yie 656 (800)
T PRK13208 630 LE-NYDFAKALEE-IESFFWHVFCDDYLE 656 (800)
T ss_pred HH-hcCHHHHHHH-HHHHHHHHhhHHHHH
Confidence 95 8999999999 9999864 666654
No 21
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.90 E-value=4.8e-05 Score=77.30 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=68.6
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh--cC-CC------CChhHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDA--RS-GS------ITPAAEDCIKKLRDEF 76 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~--~~-~~------~~~~~~~~~~~~~~~f 76 (233)
+|+++++|||++++||+++++||++.|.++ .+++|.++...+-...... .. .+ .+.-+...+..+...+
T Consensus 637 ~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v 716 (974)
T PLN02843 637 AYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEI 716 (974)
T ss_pred ccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999988 5677777654432111110 00 00 1112344566778888
Q ss_pred HHHHhhccCcHHHHHHHHHHH--HHHHHhhcC
Q 037974 77 YTRMSDDLNTSHILTGAFLDA--LKFINNSKK 106 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~l--v~~iN~~~~ 106 (233)
.++|+ ++++..|+.. |+++ ....|.|++
T Consensus 717 ~~aye-~y~f~~A~~~-i~~f~~~dlsn~Yie 746 (974)
T PLN02843 717 EESYD-NYQFFKIFQI-LQRFTIVDLSNFYLD 746 (974)
T ss_pred HHHHH-ccCHHHHHHH-HHHHHHHHHhHHHHH
Confidence 89985 5999999999 9876 557776654
No 22
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=97.77 E-value=0.00023 Score=71.97 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=68.1
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhcc
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDL 84 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDl 84 (233)
+|+++++||++++ ++|.+.++||++.+..+ .++++.++...+............+.-+...+..+...+.++| +++
T Consensus 594 ~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~~ 672 (897)
T PRK12300 594 EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGGEEELRFIDKWLLSRLNRIIKETTEAM-ESF 672 (897)
T ss_pred HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCHhHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 5899999999997 69999999999999887 4455555443322111000001112234455677788899999 589
Q ss_pred CcHHHHHHHH-HHHHHHHHhhcCC
Q 037974 85 NTSHILTGAF-LDALKFINNSKKQ 107 (233)
Q Consensus 85 NTp~Al~~~L-~~lv~~iN~~~~~ 107 (233)
++..|+.. + +.+...+|.++..
T Consensus 673 ~~~~A~~~-i~~~l~~~~n~Yi~~ 695 (897)
T PRK12300 673 QTRDAVQE-AFYELLNDLRWYLRR 695 (897)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHHh
Confidence 99999977 6 5788889988764
No 23
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=97.61 E-value=0.00055 Score=65.18 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=70.0
Q ss_pred CCChHHHHHHhccCC-CCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhh-----c-C---CCCChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIF-WLNELFASIPQYTGN----ETITLQDCEVALSPFQEDA-----R-S---GSITPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~LstH-YRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~-----~-~---~~~~~~~~~~~~~~~ 73 (233)
.|+++++||++++.. +.++++||++.+.+. ..+++.++...+....... . . .+.+..+...+..+.
T Consensus 344 ~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~ 423 (530)
T TIGR00398 344 RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEAL 423 (530)
T ss_pred HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHH
Confidence 478899999999865 999999999998765 2345555543332221110 0 0 011233455677788
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
..+..+| ++++++.|+.. ++++++..|.++...
T Consensus 424 ~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~ 456 (530)
T TIGR00398 424 EQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDEN 456 (530)
T ss_pred HHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcC
Confidence 8899999 67999999999 999999999987543
No 24
>PLN02943 aminoacyl-tRNA ligase
Probab=97.57 E-value=0.00035 Score=71.07 Aligned_cols=97 Identities=13% Similarity=-0.081 Sum_probs=68.1
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhh--------------hcCC-------CCChh
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQED--------------ARSG-------SITPA 64 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~--------------~~~~-------~~~~~ 64 (233)
+|+|+++||+++++||+++++||++.+.++ .+++|.++...+...... .... ..+.-
T Consensus 600 ~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~w 679 (958)
T PLN02943 600 EFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECW 679 (958)
T ss_pred hcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHH
Confidence 589999999999999999999999999888 566777754443221100 0000 00111
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH--HHHHhhcC
Q 037974 65 AEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDAL--KFINNSKK 106 (233)
Q Consensus 65 ~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~~ 106 (233)
+...+..+...+.++|+ .+++..|+.. |++++ ...|.|+.
T Consensus 680 ilskl~~~i~~v~~~~e-~y~f~~A~~~-i~~f~~~~~~d~YiE 721 (958)
T PLN02943 680 VVSKLHELIDSVTTSYD-KYFFGDVGRE-IYDFFWSDFADWYIE 721 (958)
T ss_pred HHHHHHHHHHHHHHHHH-hcChhHHHHH-HHHHHHHHHHHHHHH
Confidence 23445667778888884 6999999999 99995 67777765
No 25
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.57 E-value=0.00032 Score=71.33 Aligned_cols=97 Identities=6% Similarity=-0.091 Sum_probs=68.8
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc-C--C-C------CChhHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR-S--G-S------ITPAAEDCIKKLRDE 75 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~-~--~-~------~~~~~~~~~~~~~~~ 75 (233)
+|+++++|||+++++|.+.++||++.|.++ .+++|.++...+........ . . + .+.-+...+..+...
T Consensus 647 ~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~ 726 (961)
T PRK13804 647 QSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGL 726 (961)
T ss_pred hcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999886 56777776643321111100 0 0 0 011233456677788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHH-HH-HHhhcC
Q 037974 76 FYTRMSDDLNTSHILTGAFLDAL-KF-INNSKK 106 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv-~~-iN~~~~ 106 (233)
+.++| +++++.+|+.. |++++ .. .|.|++
T Consensus 727 v~~~~-e~y~f~~a~~~-l~~f~~~~lsn~Yle 757 (961)
T PRK13804 727 VREAY-DAYDFKRIYKA-LVNFVNVDLSAFYFD 757 (961)
T ss_pred HHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999 67999999999 99999 44 477654
No 26
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.52 E-value=0.00027 Score=71.57 Aligned_cols=97 Identities=7% Similarity=-0.031 Sum_probs=67.9
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc---C-------CCCChhHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR---S-------GSITPAAEDCIKKLRDE 75 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~---~-------~~~~~~~~~~~~~~~~~ 75 (233)
+|+++++|||++++.|.+.++||++.|.++ .+++|.++...+........ . ...+.-+...+..+...
T Consensus 609 ~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~ 688 (912)
T PRK05743 609 KYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEE 688 (912)
T ss_pred hcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999886 56677776544322111100 0 00112233455677788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHH--HHHhhcC
Q 037974 76 FYTRMSDDLNTSHILTGAFLDALK--FINNSKK 106 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv~--~iN~~~~ 106 (233)
+.++| ++|+++.|+.. |++++. ..|.+++
T Consensus 689 v~~~~-e~~~f~~a~~~-l~~f~~~~ls~~Yie 719 (912)
T PRK05743 689 ILEAY-ENYDFHKVYQK-LHNFCSVDLSAFYLD 719 (912)
T ss_pred HHHHH-HhcCHHHHHHH-HHHHhhhhhceeehe
Confidence 88999 57999999999 999993 4465543
No 27
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=97.47 E-value=0.00088 Score=65.44 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=67.9
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhh-hcC--------CCCChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDCEVALSPFQED-ARS--------GSITPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~ 73 (233)
.|+++++|||+++ +.+.+..|||++.+.+. ..+.|-++...+...... ..+ ...+..+...+..+.
T Consensus 316 ~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~ 395 (648)
T PRK12267 316 RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETL 395 (648)
T ss_pred HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHH
Confidence 4889999999995 58999999999998764 123343433222111111 000 111233455667778
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
..+..+|+ ++++..|+.. ++++++..|.++...
T Consensus 396 ~~v~~~~e-~~~~~~al~~-i~~~~~~~N~Yi~~~ 428 (648)
T PRK12267 396 KNYEELME-ELQFSRALEE-VWKLISRANKYIDET 428 (648)
T ss_pred HHHHHHHH-hhhHHHHHHH-HHHHHHHHHHHHHhC
Confidence 88889886 6999999999 999999999987643
No 28
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=97.29 E-value=0.0048 Score=59.14 Aligned_cols=98 Identities=10% Similarity=-0.019 Sum_probs=67.0
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhhc--------CCCCChhHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN----ETITLQDCEVALSPFQEDAR--------SGSITPAAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~ 74 (233)
+|+++++||++++. ...+.++|+++.+... ..+++.++...+..+..... ....+..+...+..+..
T Consensus 351 ~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~ 430 (556)
T PRK12268 351 RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFK 430 (556)
T ss_pred HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHH
Confidence 47899999999976 5779999999987653 22344444333222211100 01123344556677788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
.+.++| ++|+...|+.. +++++...|.++..
T Consensus 431 ~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~ 461 (556)
T PRK12268 431 EVGELL-EAGEFKKALEE-IMELAREANKYLDE 461 (556)
T ss_pred HHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHc
Confidence 888888 57999999999 99999999998754
No 29
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=97.24 E-value=0.0066 Score=59.65 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=66.4
Q ss_pred CCChHHHHHHhccCC-CC-CccCCCHHHHHhH----HHHHHHHHHHHhchhHhh-hcC----CCCChhHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIF-WL-NELFASIPQYTGN----ETITLQDCEVALSPFQED-ARS----GSITPAAEDCIKKLRDEF 76 (233)
Q Consensus 8 ~~~p~~lR~~~LstH-YR-spldfS~e~L~~A----~~~~l~~~~~~l~~~~~~-~~~----~~~~~~~~~~~~~~~~~f 76 (233)
+|+++++||+||+.. .. +.++||++.+... ..+++-++...+..+... ..+ .+.+..+...+..+...+
T Consensus 346 ~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~~~~~d~~ll~~l~~~~~~v 425 (673)
T PRK00133 346 HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKI 425 (673)
T ss_pred HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHH
Confidence 478899999999665 55 6999999987543 233444433322222111 001 122334556677788889
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 77 YTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
..+|+ .|++..|+.. +++++...|.++..
T Consensus 426 ~~a~e-~~~~~~a~~~-l~~l~~~~N~yi~~ 454 (673)
T PRK00133 426 AEAYE-AREFRKALRE-IMALADFANKYVDD 454 (673)
T ss_pred HHHHH-hcCHHHHHHH-HHHHHHHHHHHHHh
Confidence 99995 7999999999 99999999998754
No 30
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=97.19 E-value=0.0032 Score=60.61 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=81.0
Q ss_pred hHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc--CC---C------C--ChhHHHHHHHHHH
Q 037974 11 PAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR--SG---S------I--TPAAEDCIKKLRD 74 (233)
Q Consensus 11 p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~--~~---~------~--~~~~~~~~~~~~~ 74 (233)
-.++||++|+..-.++++|+.+.+.+. ....+..++.++........ .. . . +..+...+..+..
T Consensus 415 ~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~ 494 (566)
T TIGR00456 415 IGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPD 494 (566)
T ss_pred ccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 367999999999999999999987654 22234444443333322110 00 0 0 1123334456667
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhh-------hhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQ-------QLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~-------~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
.+..+| +++..+.++.. +++|++..|++++..... .......+..+...|...+.+|||...
T Consensus 495 ~v~~a~-~~~~p~~~~~~-l~~La~~~N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 495 VLEEAA-EELEPHVLTNY-LYELASLFSSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 777777 57999999999 999999999987543211 112334455666778888999999753
No 31
>PLN02224 methionine-tRNA ligase
Probab=97.15 E-value=0.0039 Score=60.55 Aligned_cols=98 Identities=18% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHH----HHHhchhHhhh-cC----CCCChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDC----EVALSPFQEDA-RS----GSITPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~----~~~l~~~~~~~-~~----~~~~~~~~~~~~~~~ 73 (233)
+|+++++||+||+ +.+.+..+||++.+.+. ..+.+-+. ...+....... .. ...+..+...+....
T Consensus 383 ~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li 462 (616)
T PLN02224 383 KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLV 462 (616)
T ss_pred HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHH
Confidence 4889999999997 68899999999986543 12233332 22222211100 00 011223455566777
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
..+.++|+ .++...|+.. ++++++..|.++..
T Consensus 463 ~~v~~~me-~~~~~~Al~~-i~el~~~~N~Yi~~ 494 (616)
T PLN02224 463 EKAQTNYE-NLSLSSACEA-VLEIGNAGNTYMDQ 494 (616)
T ss_pred HHHHHHHH-hccHHHHHHH-HHHHHHHHHHHHHh
Confidence 88888884 7999999999 99999999998764
No 32
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.06 E-value=0.0028 Score=64.72 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=65.1
Q ss_pred CCChHHHHHHhccCCC-CCccCCCHHH-HHhH--HHHHHHHHHHHhchhHh--h---h-cC---CC---CChhHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFW-LNELFASIPQ-YTGN--ETITLQDCEVALSPFQE--D---A-RS---GS---ITPAAEDCIKK 71 (233)
Q Consensus 8 ~~~p~~lR~~~LstHY-RspldfS~e~-L~~A--~~~~l~~~~~~l~~~~~--~---~-~~---~~---~~~~~~~~~~~ 71 (233)
+|+++++||+++++++ +++++||++. ++.+ .+++|.++...+..+.. . . .. .. .+.-+...+..
T Consensus 609 ~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~ 688 (975)
T PRK06039 609 KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNS 688 (975)
T ss_pred HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHH
Confidence 4789999999999998 9999999999 5554 35666655443321110 0 0 00 00 01123345667
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHH-Hhhc
Q 037974 72 LRDEFYTRMSDDLNTSHILTGAFLDALKFI-NNSK 105 (233)
Q Consensus 72 ~~~~f~~AL~DDlNTp~Al~~~L~~lv~~i-N~~~ 105 (233)
+...+.++|+ ++++..|+.. |++++..+ |-++
T Consensus 689 li~~v~~a~e-~y~~~~A~~~-l~~f~~~lsn~Yi 721 (975)
T PRK06039 689 LVKEVTEALD-NYDITKAARA-IRDFVDDLSNWYI 721 (975)
T ss_pred HHHHHHHHHH-ccCHHHHHHH-HHHHHHHHHHHHH
Confidence 7888999995 6999999999 99999776 4344
No 33
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.06 E-value=0.021 Score=45.56 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=74.5
Q ss_pred hHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc-----CCCCC---------hhHHHHHHHHH
Q 037974 11 PAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR-----SGSIT---------PAAEDCIKKLR 73 (233)
Q Consensus 11 p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~-----~~~~~---------~~~~~~~~~~~ 73 (233)
..++||.+|+..-.++++|+.+.+... ..-.+..++.++..+..... ..+.+ ..+...+..+.
T Consensus 5 ~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~~~~ 84 (156)
T cd07956 5 VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLAKFP 84 (156)
T ss_pred hhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHHHhH
Confidence 478999999999999999999986643 00012222222222211100 00111 11222233333
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCch------hhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPK------QQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~------~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+.+..++. +.+...++.. +.+|...+|.+.+... .........+..+...+...+.+|||...
T Consensus 85 ~~i~~~~~-~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 85 EVVKNAAE-TLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HHHHHHHH-HcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44444444 5789999999 9999999998754321 11122345566677888889999999753
No 34
>PLN02610 probable methionyl-tRNA synthetase
Probab=97.02 E-value=0.011 Score=59.05 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=65.9
Q ss_pred CChHHHHHHhc-cCCCCCccCCCHHHHHhH----HHHHHHH----HHHHhch----hHhhh--cC-C----CCChhHHHH
Q 037974 9 LFPAFVRTLLL-DIFWLNELFASIPQYTGN----ETITLQD----CEVALSP----FQEDA--RS-G----SITPAAEDC 68 (233)
Q Consensus 9 ~~p~~lR~~~L-stHYRspldfS~e~L~~A----~~~~l~~----~~~~l~~----~~~~~--~~-~----~~~~~~~~~ 68 (233)
|+++++||||| .....+..|||++.+.+. ..+.|-+ +...+.. ..... .. . ..+..+...
T Consensus 367 yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~ 446 (801)
T PLN02610 367 IPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEK 446 (801)
T ss_pred CCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHH
Confidence 89999999998 567888999999988766 2233333 2222221 00000 00 0 011234445
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 69 IKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 69 ~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
+..+...+.++| +.++...|+.. ++++++..|.|+...
T Consensus 447 ~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~ 484 (801)
T PLN02610 447 VGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQES 484 (801)
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhc
Confidence 667778888888 56999999999 999999999998754
No 35
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=96.98 E-value=0.0063 Score=57.82 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=77.5
Q ss_pred HHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc--C---------CCCChhHHHHHHHHHHHHH
Q 037974 12 AFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR--S---------GSITPAAEDCIKKLRDEFY 77 (233)
Q Consensus 12 ~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~--~---------~~~~~~~~~~~~~~~~~f~ 77 (233)
.++||++|+.++.++++|+++.+.+. ..-.++-++..+..+..... . .+.+..+...+..+...+.
T Consensus 360 dAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~ 439 (507)
T PRK01611 360 DAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVE 439 (507)
T ss_pred ceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999998765 00022222222222221100 0 0111233445566677777
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHhhcCCch-----h-hhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 78 TRMSDDLNTSHILTGAFLDALKFINNSKKQPK-----Q-QQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 78 ~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~-----~-~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+|+++ +....+... |++|++..|++..... . ........+..+...|...+++|||...
T Consensus 440 ~a~~~-~~p~~l~~y-l~~la~~f~~fY~~~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 440 SAAEE-LEPHRIANY-LYELAGAFHSFYNRVLLKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HHHHh-CCcHHHHHH-HHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 77775 888888888 9999999997553111 1 1112344455667778888999999753
No 36
>PLN02882 aminoacyl-tRNA ligase
Probab=96.94 E-value=0.0088 Score=62.09 Aligned_cols=98 Identities=8% Similarity=-0.067 Sum_probs=65.9
Q ss_pred CCChHHHHHHhccCCC--CCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhh--------cCC----------CCChh
Q 037974 8 ILFPAFVRTLLLDIFW--LNELFASIPQYTGN---ETITLQDCEVALSPFQEDA--------RSG----------SITPA 64 (233)
Q Consensus 8 ~~~p~~lR~~~LstHY--RspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~--------~~~----------~~~~~ 64 (233)
+|++++||||+++++| ..+++||++.+.+. .+.++.+++..+....... ... ..+.-
T Consensus 631 ~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~w 710 (1159)
T PLN02882 631 KYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRW 710 (1159)
T ss_pred HhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHH
Confidence 5889999999999988 48899999998875 3445555443332211100 000 00112
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH-HHHhhcCC
Q 037974 65 AEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK-FINNSKKQ 107 (233)
Q Consensus 65 ~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~-~iN~~~~~ 107 (233)
+...+..+...+.++|+ ++++..|+.. |++++. ..|.|+..
T Consensus 711 Ils~l~~li~~v~~~me-~y~f~~A~~~-I~~Fv~~lsN~YIe~ 752 (1159)
T PLN02882 711 INSATQSLVKFVREEMG-AYRLYTVVPY-LVKFIDNLTNIYVRF 752 (1159)
T ss_pred HHHHHHHHHHHHHHHHH-ccCHHHHHHH-HHHHHHHHhHHHHHh
Confidence 33455677788888886 5999999999 999997 47887753
No 37
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=96.87 E-value=0.0051 Score=62.09 Aligned_cols=97 Identities=10% Similarity=-0.090 Sum_probs=65.3
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhc--hhHhhhc---C----C---CCChhHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALS--PFQEDAR---S----G---SITPAAEDCIKKL 72 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~--~~~~~~~---~----~---~~~~~~~~~~~~~ 72 (233)
+|+++++||+++++.+.+.++||++.+..+ ..+.+.++...+. ....... . . ..+..+...+..+
T Consensus 628 ~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~ 707 (861)
T TIGR00392 628 KYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSL 707 (861)
T ss_pred HcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999875 2234443333322 1110000 0 0 0112234456677
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHH--HHhhcC
Q 037974 73 RDEFYTRMSDDLNTSHILTGAFLDALKF--INNSKK 106 (233)
Q Consensus 73 ~~~f~~AL~DDlNTp~Al~~~L~~lv~~--iN~~~~ 106 (233)
...+.++|+ +|++..|+.. |++++.. .|.++.
T Consensus 708 ~~~v~~~~e-~~~~~~a~~~-l~~f~~~~l~n~Yi~ 741 (861)
T TIGR00392 708 VEEVNEALE-KYNFHKVLRA-LQDFIVEELSNWYIR 741 (861)
T ss_pred HHHHHHHHH-hccHHHHHHH-HHHHHHHHHHHHHHH
Confidence 788889996 7999999999 9999876 676654
No 38
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=96.80 E-value=0.0059 Score=61.61 Aligned_cols=97 Identities=6% Similarity=-0.056 Sum_probs=67.0
Q ss_pred CCChHHHHHHhccCCC-CCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh---cC-----CCCChhHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFW-LNELFASIPQYTGN--ETITLQDCEVALSPFQEDA---RS-----GSITPAAEDCIKKLRDEF 76 (233)
Q Consensus 8 ~~~p~~lR~~~LstHY-RspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~---~~-----~~~~~~~~~~~~~~~~~f 76 (233)
+|+++++||++++.++ .++++||++.+..+ ..++|-++...+....... .. ...+.-+...+..+...+
T Consensus 542 ~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v 621 (861)
T TIGR00422 542 KYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEV 621 (861)
T ss_pred HhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 4788999999999998 99999999999877 3556655444332211100 00 001112344566777888
Q ss_pred HHHHhhccCcHHHHHHHHHHHH--HHHHhhcC
Q 037974 77 YTRMSDDLNTSHILTGAFLDAL--KFINNSKK 106 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~~ 106 (233)
.++|+ ++++..|+.. |++++ ...|.|+.
T Consensus 622 ~~~~e-~~~f~~A~~~-l~~f~~~~~~n~Yie 651 (861)
T TIGR00422 622 RKALD-KYRFAEAAKA-LYEFIWNDFCDWYIE 651 (861)
T ss_pred HHHHH-ccCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 89994 6999999999 99997 67777754
No 39
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=96.71 E-value=0.016 Score=58.63 Aligned_cols=97 Identities=8% Similarity=-0.075 Sum_probs=65.7
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh--cCC-------CCChhHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDA--RSG-------SITPAAEDCIKKLRDE 75 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~--~~~-------~~~~~~~~~~~~~~~~ 75 (233)
+|+++++||++++. .+.++++||++.+..+ ..++|.++...+....... ... ..+.-+...+..+...
T Consensus 537 ~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~ 616 (874)
T PRK05729 537 KYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAE 616 (874)
T ss_pred HhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 47889999999987 7999999999999877 4566655443332110000 000 0011233455677788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHH--HHHHhhcC
Q 037974 76 FYTRMSDDLNTSHILTGAFLDAL--KFINNSKK 106 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~~ 106 (233)
+.++|+ ++++..|+.. |++++ ...|.|+.
T Consensus 617 v~~~~e-~y~f~~a~~~-l~~f~~~~~~~~Yle 647 (874)
T PRK05729 617 VTEALD-KYRFDEAARA-LYEFIWNEFCDWYLE 647 (874)
T ss_pred HHHHHH-ccCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 889996 7999999999 99998 45666654
No 40
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=96.62 E-value=0.011 Score=56.85 Aligned_cols=125 Identities=12% Similarity=-0.008 Sum_probs=79.8
Q ss_pred HHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc---C-CC----CC--hhHHHHHHHHHHHHHH
Q 037974 12 AFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR---S-GS----IT--PAAEDCIKKLRDEFYT 78 (233)
Q Consensus 12 ~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~---~-~~----~~--~~~~~~~~~~~~~f~~ 78 (233)
.++||++|+....++++|+.+.+..- .-=.++-++.++..+.+... . .+ .+ .++...+..+...+..
T Consensus 417 ~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~ 496 (562)
T PRK12451 417 GAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEA 496 (562)
T ss_pred ceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999986543 11133333333333322210 0 00 01 1333445566666777
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHhhcCCchhh-----hhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 79 RMSDDLNTSHILTGAFLDALKFINNSKKQPKQQ-----QLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 79 AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~-----~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+| ++++...++.. +++|++..|++....... .......+..+...|...+++|||...
T Consensus 497 a~-e~~ep~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~ 559 (562)
T PRK12451 497 AF-NKNEPSVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEAP 559 (562)
T ss_pred HH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 77 57999999999 999999999976542211 112344455667788888999999753
No 41
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=96.62 E-value=0.0028 Score=60.32 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=33.0
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVA 48 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~ 48 (233)
++|+++||+|+++||++|++|+.+.| ++ .+.++.+++..
T Consensus 292 ~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 292 YTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred cCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHHHh
Confidence 67899999999999999999999999 66 56777665543
No 42
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=96.49 E-value=0.015 Score=60.00 Aligned_cols=97 Identities=6% Similarity=-0.084 Sum_probs=65.5
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh--cC--------CCCChhHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDA--RS--------GSITPAAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~--~~--------~~~~~~~~~~~~~~~~ 74 (233)
+|+++++||++++ +.+.+.++||++.+... ..++|-++...+....... .. ...+..+...+..+..
T Consensus 555 ~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~ 634 (1052)
T PRK14900 555 QYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVN 634 (1052)
T ss_pred HhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHH
Confidence 5889999999997 47999999999998765 3455555433331111000 00 0011223445667778
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHH--HHHHhhcC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDAL--KFINNSKK 106 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~~ 106 (233)
.+.++| +++++..|+.. |++++ ...|.|+.
T Consensus 635 ~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie 666 (1052)
T PRK14900 635 ETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIE 666 (1052)
T ss_pred HHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHH
Confidence 899999 57999999999 99997 46777765
No 43
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.047 Score=55.22 Aligned_cols=93 Identities=8% Similarity=-0.017 Sum_probs=67.2
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhc--C--CC------CChhHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDAR--S--GS------ITPAAEDCIKKLRDE 75 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~--~--~~------~~~~~~~~~~~~~~~ 75 (233)
+|.+++||||++++.|-..+.||++.+++. .+++|.+.++.+........ . .. .+.=+...+..+...
T Consensus 619 ~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~ 698 (933)
T COG0060 619 KYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKE 698 (933)
T ss_pred hhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHH
Confidence 577899999999999999999999998887 67888887665543322110 0 00 011123445677788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHH-HHHH
Q 037974 76 FYTRMSDDLNTSHILTGAFLDAL-KFIN 102 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv-~~iN 102 (233)
+.+||++ +++..++.. |.+++ -.++
T Consensus 699 v~eaye~-y~f~~v~~~-l~~F~~~dLS 724 (933)
T COG0060 699 VREAYEN-YDFHKVVRA-LMNFVSEDLS 724 (933)
T ss_pred HHHHHHh-cCHHHHHHH-HHHHHHhhhh
Confidence 8888874 999999999 99999 4443
No 44
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.16 Score=48.89 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=65.3
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhh-hc-----CC----CCChhHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDCEVALSPFQED-AR-----SG----SITPAAEDCIKKL 72 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~-~~-----~~----~~~~~~~~~~~~~ 72 (233)
.|+++++||+++. ..--+..|||++.+.+- ..+.+-++....-..... .. .. +.+.++...+..+
T Consensus 350 ~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~ 429 (558)
T COG0143 350 QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREA 429 (558)
T ss_pred HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHH
Confidence 3889999999986 45778999999998765 223333333222211111 00 00 0112344455566
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 73 RDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 73 ~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
...+.++|+. +...+|+.. +++|++..|++++..
T Consensus 430 ~~~~~~~~e~-~~~~~Al~~-i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 430 LEAVAEAMEK-YEFRKALEE-IMALASRANKYIDEQ 463 (558)
T ss_pred HHHHHHHHHh-hhHHHHHHH-HHHHHHHHHHHhhcC
Confidence 7777777764 999999999 999999999998765
No 45
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.03 Score=52.53 Aligned_cols=53 Identities=43% Similarity=0.627 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEecCccc
Q 037974 161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPCVPVE 213 (233)
Q Consensus 161 ~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~~~~~ 213 (233)
.+.+....++|..++++|+++++|++|.++...||.+.|.|.++.|+..-+..
T Consensus 525 ~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys~ 577 (586)
T KOG2007|consen 525 REELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYSA 577 (586)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhcccccccc
Confidence 34477778888999999999999999999999999999999999999854443
No 46
>PLN02563 aminoacyl-tRNA ligase
Probab=94.64 E-value=0.26 Score=50.53 Aligned_cols=94 Identities=6% Similarity=-0.098 Sum_probs=61.6
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhH---hhhc---CCCCChhHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQ---EDAR---SGSITPAAEDCIKKLRDEFYT 78 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~---~~~~---~~~~~~~~~~~~~~~~~~f~~ 78 (233)
+|.++++|||+|++ .....++|+++.+..+ .++++-++........ .... ....+..+...+..+..++.+
T Consensus 740 kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte 819 (963)
T PLN02563 740 EYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTE 819 (963)
T ss_pred HcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHH
Confidence 58899999999865 4566678999998877 3444444432210000 0000 001123344556777888999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHh
Q 037974 79 RMSDDLNTSHILTGAFLDALKFINN 103 (233)
Q Consensus 79 AL~DDlNTp~Al~~~L~~lv~~iN~ 103 (233)
+| +++++..|++. |++++..+++
T Consensus 820 ~~-e~y~FntAi~~-lmef~n~l~~ 842 (963)
T PLN02563 820 EI-ESTRFNTAISA-MMEFTNAAYK 842 (963)
T ss_pred HH-HcCCHHHHHHH-HHHHHHHHhC
Confidence 99 58999999999 9999987764
No 47
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=94.17 E-value=0.4 Score=50.25 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=57.4
Q ss_pred CCChHHHHHHhccC-CC-CCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc-----C------------CCCChhH
Q 037974 8 ILFPAFVRTLLLDI-FW-LNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR-----S------------GSITPAA 65 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HY-RspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~-----~------------~~~~~~~ 65 (233)
+|+++++|||++++ .. -..++||++.+.+. .+..+.+++..+........ . ...+.-+
T Consensus 737 kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWI 816 (1205)
T PTZ00427 737 KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWI 816 (1205)
T ss_pred hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHH
Confidence 58899999999975 43 57889999998765 23333333322211000000 0 0011123
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 037974 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99 (233)
Q Consensus 66 ~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~ 99 (233)
...+..+...+.++|+ ++++..|+.. |++++.
T Consensus 817 Ls~l~~li~~v~~~me-~Y~f~~A~~~-i~~Fi~ 848 (1205)
T PTZ00427 817 FSSVQSLTKSVHTEMK-AYKLYNVLPK-LLQFIE 848 (1205)
T ss_pred HHHHHHHHHHHHHHHH-ccCHHHHHHH-HHHHHH
Confidence 3456677888999995 6999999999 999986
No 48
>PLN02286 arginine-tRNA ligase
Probab=94.00 E-value=0.86 Score=44.18 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=73.6
Q ss_pred hHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhcC--------C--CC-C---hhHHHHHHHHH
Q 037974 11 PAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDARS--------G--SI-T---PAAEDCIKKLR 73 (233)
Q Consensus 11 p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~~--------~--~~-~---~~~~~~~~~~~ 73 (233)
-.++||++|+.+..++++|+++.+..- .-=.++-++.++..+.+.... . .. + ..+...+..+.
T Consensus 427 ~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp 506 (576)
T PLN02286 427 YGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFP 506 (576)
T ss_pred hhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHH
Confidence 367999999999999999999996643 101234344434333322110 0 00 1 12222333433
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchhh----hhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQ----QLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~----~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
.- ...-..++.-..-... |++|++..|++-...... .......+..+...|...+.+|||...
T Consensus 507 ~v-v~~a~~~~~P~~l~~Y-l~~LA~~F~~fY~~~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 507 EV-VEEACTDLLPNRLCEY-LYNLSEKFTKFYSNCKVNGSEEETSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HH-HHHHHHhcCchHHHHH-HHHHHHHHHHHHhcCccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33 3334556776666677 999999999865322210 012344455667778888999999753
No 49
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=93.79 E-value=1.6 Score=32.09 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 65 AEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 65 ~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
+...+..+..++.++|+ ++++..|+.. +++++..+|+++...
T Consensus 43 ~~~~~~~~~~~~~~~~~-~~~~~~a~~~-i~~~~~~~n~~~~~~ 84 (117)
T cd07958 43 LRRKLHKTIKKVTEDIE-RLRFNTAIAA-LMELVNALYKYKKKD 84 (117)
T ss_pred HHHHHHHHHHHHHHHHh-CCcchHHHHH-HHHHHHHHHHhhccc
Confidence 34455677788899995 6999999999 999999999997643
No 50
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.33 Score=45.01 Aligned_cols=129 Identities=19% Similarity=0.028 Sum_probs=73.9
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHHHHHhch--hHhh-----hcC-CC----CChhHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDCEVALSP--FQED-----ARS-GS----ITPAAEDCIK 70 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~~~~l~~--~~~~-----~~~-~~----~~~~~~~~~~ 70 (233)
+|.++.+|||||. +..-+.=||+++.+..- ..+++-+....... +... ... .+ ....+...+.
T Consensus 361 kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~ 440 (578)
T KOG0436|consen 361 KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVE 440 (578)
T ss_pred HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHH
Confidence 5889999999995 56778889999887643 11222222111110 0000 000 00 0112333444
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCch-----hhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 71 KLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPK-----QQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 71 ~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~-----~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+....| +-=-|+|-.+.|+-+ +.+.++..|.++.... .+++.+...+......+.+++.|+|+...
T Consensus 441 kl~ev~-a~~~d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illq 511 (578)
T KOG0436|consen 441 KLPEVA-ATNYDNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQ 511 (578)
T ss_pred HhHHHH-HhhcccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444433 334567999999999 9999999999765432 11123344444455556677888888644
No 51
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=92.42 E-value=0.84 Score=47.05 Aligned_cols=97 Identities=9% Similarity=-0.127 Sum_probs=61.6
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhh---cC---------CC---CChhHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDA---RS---------GS---ITPAAEDCI 69 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~---~~---------~~---~~~~~~~~~ 69 (233)
+|+++++||++++. .--..++|+.+.+... ..++|.++...+....... .. .. .+.-+...+
T Consensus 639 ~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L 718 (995)
T PTZ00419 639 ECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRL 718 (995)
T ss_pred ccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHH
Confidence 69999999999963 3556799999988865 3456665544322111000 00 00 011233456
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHH--HHHHhhcC
Q 037974 70 KKLRDEFYTRMSDDLNTSHILTGAFLDAL--KFINNSKK 106 (233)
Q Consensus 70 ~~~~~~f~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~~ 106 (233)
..+...+.++|+ ++++..|+.. |++++ ...|.|+.
T Consensus 719 ~~~i~~v~~~~e-~y~f~~A~~~-i~~F~~~~~~n~Yie 755 (995)
T PTZ00419 719 NVAIKEVTEGFK-EYDFSEATQA-TYNFWLYELCDVYLE 755 (995)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHH-HHHHHHHhhHHHHHH
Confidence 677788999996 7999999999 99963 44555543
No 52
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=1.8 Score=43.56 Aligned_cols=98 Identities=6% Similarity=-0.087 Sum_probs=56.2
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCC-hhHHHHHHHHHHHHHHHHhhc
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSIT-PAAEDCIKKLRDEFYTRMSDD 83 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~AL~DD 83 (233)
+|.++++|+|++. +-.-+.++|+++.++.+ -++++.++........... ..... ......+..+...+.+.++..
T Consensus 596 ~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-~~~~~~~~~~~~~h~~~~~v~~~~e~~ 674 (814)
T COG0495 596 KYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-LTKEQGKEDRWLLHRTIKKVTEDFEAR 674 (814)
T ss_pred HhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999998775 57889999999999988 3455555433322110000 00101 111112233333344444333
Q ss_pred cCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 84 LNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 84 lNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
+-.-.|++. +++|+..+..+...
T Consensus 675 ~~~nt~i~~-~m~l~N~l~~~~~~ 697 (814)
T COG0495 675 QTFNTAIAA-LMELLNALRKYLRR 697 (814)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhc
Confidence 444557888 99999988887654
No 53
>PLN02381 valyl-tRNA synthetase
Probab=91.50 E-value=1.4 Score=45.88 Aligned_cols=89 Identities=9% Similarity=-0.114 Sum_probs=58.3
Q ss_pred CCChHHHHHHhccCCC-CCccCCCHHHHHhH--HHHHHHHHHHHhchhHhh-hcC---C------CCChhHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFW-LNELFASIPQYTGN--ETITLQDCEVALSPFQED-ARS---G------SITPAAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~LstHY-RspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~-~~~---~------~~~~~~~~~~~~~~~ 74 (233)
+|++++|||+++++.+ ...++|+...+... .+++|.++...+...... ... . ..+.-+...+..+..
T Consensus 709 ~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~ 788 (1066)
T PLN02381 709 ECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAIS 788 (1066)
T ss_pred ccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHH
Confidence 7999999999996654 56799999988765 355666655433211100 000 0 011112344667778
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHH
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDAL 98 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv 98 (233)
.+.++|+ .+++..|+.. |++++
T Consensus 789 ~v~~~~e-~y~F~~A~~~-l~~F~ 810 (1066)
T PLN02381 789 KTVSSLD-AYEFSDAAST-VYSWW 810 (1066)
T ss_pred HHHHHHH-hCCHHHHHHH-HHHHH
Confidence 8888886 7999999999 99863
No 54
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=8.5 Score=37.44 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=71.6
Q ss_pred HHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc--CCC--------C----ChhHHHHHHHHHH
Q 037974 12 AFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR--SGS--------I----TPAAEDCIKKLRD 74 (233)
Q Consensus 12 ~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~--~~~--------~----~~~~~~~~~~~~~ 74 (233)
.++||++|+.+=.+|++|.++.+..= .-=.++-++.++..+.+... ..+ . +.++...+..+-.
T Consensus 426 ~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~ 505 (577)
T COG0018 426 DAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPE 505 (577)
T ss_pred hhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHH
Confidence 57999999999999999999987643 11122223333333222111 000 0 0122222333333
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCch------h-hhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPK------Q-QQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~------~-~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+.+.-.+++.....-.. |.+|.+..|+.-+... . ........+..+...|...+.+|||...
T Consensus 506 -vl~~aa~~~~Ph~la~Y-L~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 506 -VLEEAAEELEPHRLANY-LYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred -HHHHHHHhcCchHHHHH-HHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34444456766666667 9999999998643322 1 1122344556667788889999999753
No 55
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=88.51 E-value=6.2 Score=28.50 Aligned_cols=40 Identities=5% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 65 AEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 65 ~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
+...+..+...+..+| +++....|+.. +++++..+|.++.
T Consensus 44 l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n~y~~ 83 (117)
T cd07375 44 LLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhccHHHH
Confidence 4455667788999999 58999999999 9999999998875
No 56
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=86.62 E-value=0.96 Score=43.21 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=27.1
Q ss_pred CChHHHHHHhc-cCCCCCccCCCHHHHHhH--HHHHHHHHH
Q 037974 9 LFPAFVRTLLL-DIFWLNELFASIPQYTGN--ETITLQDCE 46 (233)
Q Consensus 9 ~~p~~lR~~~L-stHYRspldfS~e~L~~A--~~~~l~~~~ 46 (233)
|+|+++|||++ ++||+++++|+. +.++ .+.++.+.+
T Consensus 298 ~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 298 APPESLRLFMFARPKPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 67899995555 899999999999 6666 455555544
No 57
>PLN02959 aminoacyl-tRNA ligase
Probab=85.51 E-value=3.8 Score=42.75 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=55.3
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhHHHHHHHHHHHHhchhHhh---hcC----CCCChhHHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGNETITLQDCEVALSPFQED---ARS----GSITPAAEDCIKKLRDEFYTR 79 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A~~~~l~~~~~~l~~~~~~---~~~----~~~~~~~~~~~~~~~~~f~~A 79 (233)
+|+++++||+++++ .+...+||+++.+..+ ..++.+....+...... ... ...+.-+...+..+...+.++
T Consensus 735 kyGADalRl~la~~~~~~~D~nF~~k~~n~~-~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a 813 (1084)
T PLN02959 735 EFSADATRFALADAGDGVDDANFVFETANAA-ILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKN 813 (1084)
T ss_pred HhCchHHHHHHhhcCCccCCCCccHHHHHHH-HHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999987 7899999999887655 22333322211111100 000 011222344566777888888
Q ss_pred HhhccCcHHHHHHHHHHHHHH
Q 037974 80 MSDDLNTSHILTGAFLDALKF 100 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~~ 100 (233)
|+ .+++..|+...++++...
T Consensus 814 ~e-~y~f~~A~~~~~Yel~~~ 833 (1084)
T PLN02959 814 YE-AMMFREALKSGFYDLQAA 833 (1084)
T ss_pred HH-cccHHHHHHHHHHHHHHh
Confidence 86 599999998823434433
No 58
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=85.44 E-value=5.3 Score=30.58 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=48.6
Q ss_pred CCHHHHHhH--HHHHHHHHHHHhchhHhhh-c-----C--CCCChhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 037974 29 ASIPQYTGN--ETITLQDCEVALSPFQEDA-R-----S--GSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDAL 98 (233)
Q Consensus 29 fS~e~L~~A--~~~~l~~~~~~l~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv 98 (233)
||++.+..+ .+.++.++...+....... . + ...+..+...+..+...+..+| +.+++..|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 678887766 4556666554432110000 0 0 0111233445667778889999 67999999999 99999
Q ss_pred H--HHHhhcCC
Q 037974 99 K--FINNSKKQ 107 (233)
Q Consensus 99 ~--~iN~~~~~ 107 (233)
. ..|.++..
T Consensus 79 ~~~~~N~Yi~~ 89 (135)
T cd07962 79 WNDFCDWYLEL 89 (135)
T ss_pred HHHHhHHHHHH
Confidence 8 68988764
No 59
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=84.16 E-value=14 Score=26.99 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHH-HHHHHHHHhhcC
Q 037974 65 AEDCIKKLRDEFYTRMSDDLNTSHILTGAF-LDALKFINNSKK 106 (233)
Q Consensus 65 ~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L-~~lv~~iN~~~~ 106 (233)
+...+..+..++.++|+ ++++..|++. + +++.+.+|.++.
T Consensus 40 ~~~~~~~~i~~v~~~~~-~~~f~~a~~~-~~~~~~~~~~~Y~~ 80 (117)
T cd07959 40 LLSRLNRLIKETTEAYE-NMQFREALKE-GLYELQNDLDWYRE 80 (117)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHH-HHHHHHHHHHHHHH
Confidence 34456677888999994 7999999999 8 999999998865
No 60
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=84.00 E-value=9.8 Score=28.24 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 63 PAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 63 ~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
..+...+..+..++..+|+ +|+...|+.. +++++..+|.++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~-~~~~~~~~n~y~~~ 81 (129)
T cd07957 39 EELLEEAEELLEEVAEAME-ELEFRKALEE-IMELARAANKYIDE 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccHHHHHHH-HHHHHHHHHhhhcc
Confidence 3445566778888999995 8999999999 99999999998764
No 61
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.60 E-value=8.9 Score=38.95 Aligned_cols=89 Identities=7% Similarity=-0.077 Sum_probs=59.3
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCC--------CCChhHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSG--------SITPAAEDCIKKLRDEF 76 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~f 76 (233)
+|.+++|||++.+. +=-..++|+.+.++.+ ..++|-++.+.+.......... ..+.=+...+..+...+
T Consensus 542 ~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v 621 (877)
T COG0525 542 KYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEV 621 (877)
T ss_pred HhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHH
Confidence 58899999999888 7788999999999988 4566666554443211111000 11112234566777888
Q ss_pred HHHHhhccCcHHHHHHHHHHHH
Q 037974 77 YTRMSDDLNTSHILTGAFLDAL 98 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv 98 (233)
.++|++ ++...|..+ |.+++
T Consensus 622 ~~~ld~-y~f~~a~~~-ly~F~ 641 (877)
T COG0525 622 TEALDN-YRFDEAARA-LYEFI 641 (877)
T ss_pred HHHHHh-hhHHHHHHH-HHHHh
Confidence 899887 667777777 76665
No 62
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=78.32 E-value=5.5 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCChhhhHHHHHHhHh
Q 037974 163 DVLHLIEERATAKKNKDFSKSDQIRADLTR 192 (233)
Q Consensus 163 ~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~ 192 (233)
.|..|-..-..|-.+-+|+.|=.|||++..
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 466677777888889999999999999865
No 63
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=77.93 E-value=18 Score=26.68 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=37.1
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHhhcCCc------hhhh-hhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 80 MSDDLNTSHILTGAFLDALKFINNSKKQP------KQQQ-LSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~~iN~~~~~~------~~~~-~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
...+++....+.. +++|.+.+|++.+.. .... ......+..+...+...+++|||...
T Consensus 52 a~~~~~p~~l~~y-L~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~ 116 (119)
T PF05746_consen 52 AAKDLEPHKLCDY-LYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPL 116 (119)
T ss_dssp HHHHT-CHHHHHH-HHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3445888888889 999999999864322 1111 22345566677888899999999753
No 64
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.53 E-value=26 Score=34.75 Aligned_cols=97 Identities=4% Similarity=-0.061 Sum_probs=57.2
Q ss_pred CCChHHHHHHhc-cCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC------CCC-Ch---hHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLL-DIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS------GSI-TP---AAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~L-stHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~------~~~-~~---~~~~~~~~~~~ 74 (233)
+|.++.+|+++| ++.-|.|++|++..+.-- .+.|+-.+...+-........ .+. +. .+.+..+.+..
T Consensus 634 ~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 634 EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred HhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 578899998765 788999999998877654 233443332222211111100 010 11 22223344555
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhc
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSK 105 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~ 105 (233)
.+.+.+..+|..-.||+. +++|...+-++.
T Consensus 714 ~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~ 743 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISD-MMGLTNALKKAL 743 (876)
T ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 666778888877778888 888887665544
No 65
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=71.69 E-value=9.5 Score=34.77 Aligned_cols=27 Identities=11% Similarity=-0.080 Sum_probs=22.2
Q ss_pred CChHHHHHHhccCC-CCCccCCCHHHHH
Q 037974 9 LFPAFVRTLLLDIF-WLNELFASIPQYT 35 (233)
Q Consensus 9 ~~p~~lR~~~LstH-YRspldfS~e~L~ 35 (233)
++|+++||+|++++ -.++++|+.+...
T Consensus 293 ~~~dalR~~~l~~~~~~~~i~Fd~~~~~ 320 (353)
T cd00674 293 APPEVLRYLYARRKNPEKHIGFDLDILR 320 (353)
T ss_pred hChHHHHHHHHhCCCCCCCCCcChhHHH
Confidence 45799999999999 7779999986443
No 66
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=61.14 E-value=2.4 Score=22.17 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=7.8
Q ss_pred HHHHhhccCc
Q 037974 77 YTRMSDDLNT 86 (233)
Q Consensus 77 ~~AL~DDlNT 86 (233)
.++|+|||+-
T Consensus 7 la~MCDdFD~ 16 (21)
T PF11430_consen 7 LAAMCDDFDA 16 (21)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4789999874
No 67
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.38 E-value=1.4e+02 Score=28.14 Aligned_cols=101 Identities=12% Similarity=0.001 Sum_probs=65.0
Q ss_pred CCCCChHHHHHHhccCCC-CCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhhcC--------CCCChhHHHHHHHH
Q 037974 6 GIILFPAFVRTLLLDIFW-LNELFASIPQYTGN----ETITLQDCEVALSPFQEDARS--------GSITPAAEDCIKKL 72 (233)
Q Consensus 6 ~~~~~p~~lR~~~LstHY-RspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~ 72 (233)
+...+|.+-||++|+..= .+.-.||++.+..- .++.|-+|...+-.+..+.-+ ...+..+.+.+...
T Consensus 359 d~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~ 438 (567)
T KOG1247|consen 359 DTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNEL 438 (567)
T ss_pred cCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHH
Confidence 455688899999998653 34567888776644 455565655444333222101 12233455566677
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc
Q 037974 73 RDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQP 108 (233)
Q Consensus 73 ~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~ 108 (233)
..+..++|+- .-.-.|+.. ++++.+..|.++..+
T Consensus 439 ~~~y~~~me~-vklr~~l~~-~m~is~~GNqylQ~~ 472 (567)
T KOG1247|consen 439 LAKYVAAMEK-VKLREALKT-AMEISRRGNQYLQEN 472 (567)
T ss_pred HHHHHHHHHH-HHHHHHHHH-HHHHHHhhhHHHhcc
Confidence 7777777764 666778888 999999999987654
No 68
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=59.43 E-value=70 Score=23.65 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCch-------hhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 70 KKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPK-------QQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 70 ~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~-------~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
..+.+.+..++ .+.+....+.. +++|...+|.+.+... .........+..+...+..++.+|||.+.
T Consensus 46 ~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~ 119 (122)
T smart00836 46 ARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAP 119 (122)
T ss_pred HHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 34434344443 35788888999 9999999998754221 11122344556677788889999999754
No 69
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=59.19 E-value=72 Score=25.49 Aligned_cols=76 Identities=8% Similarity=-0.045 Sum_probs=46.4
Q ss_pred CCHHHHHhH--HHHHHHHHHHHhchhHhhhcCC-------C---CChhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 037974 29 ASIPQYTGN--ETITLQDCEVALSPFQEDARSG-------S---ITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLD 96 (233)
Q Consensus 29 fS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~-------~---~~~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~ 96 (233)
+|++.+.++ .++++.+++..+.......... . .+.-+...+..+...+.++| ++++...|+.. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 466777776 5667777655443211110000 0 01122344566778888999 47999999999 999
Q ss_pred HHH--HHHhhcC
Q 037974 97 ALK--FINNSKK 106 (233)
Q Consensus 97 lv~--~iN~~~~ 106 (233)
++. ..|.|+.
T Consensus 79 f~~~~l~n~Yi~ 90 (180)
T cd07960 79 FCTVDLSAFYLD 90 (180)
T ss_pred HHHHHHHHHHHH
Confidence 996 4477654
No 70
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=57.61 E-value=21 Score=24.03 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=29.1
Q ss_pred hHHHHHHhHhCCcEEeecCCCeeEEecCccch---hhhccchHH
Q 037974 183 SDQIRADLTRKGIALMDVRKETIWRPCVPVEQ---EQEAPLVEK 223 (233)
Q Consensus 183 AD~IRd~L~~~GI~l~D~~~Gt~w~~~~~~~~---~~~~~~~~~ 223 (233)
.+.+.+-|..+|+.++-..++..|.+..|.-+ ..++-++++
T Consensus 21 ~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEe 64 (71)
T smart00874 21 AEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEE 64 (71)
T ss_pred HHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHH
Confidence 46688999999999976544456888777654 555555554
No 71
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=56.21 E-value=14 Score=35.84 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCChHHHHHHhccCCCC-CccCCCHHHHHhH
Q 037974 8 ILFPAFVRTLLLDIFWL-NELFASIPQYTGN 37 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYR-spldfS~e~L~~A 37 (233)
-|+|++||.||++.+|+ ++..||.+.|...
T Consensus 371 G~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~ 401 (567)
T PRK04156 371 GILPEAIRELIIEVGVKETDATISWENLYAI 401 (567)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 37899999999999999 9999999988755
No 72
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.96 E-value=84 Score=31.71 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=56.9
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCC----CC------ChhHHHHHHHHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSG----SI------TPAAEDCIKKLRDEF 76 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~----~~------~~~~~~~~~~~~~~f 76 (233)
|..+++|||.-++.|-..+..++..|.++ .+.+++..++.+-......... +. +.-.+..+.++..++
T Consensus 637 yGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i 716 (937)
T KOG0433|consen 637 YGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRI 716 (937)
T ss_pred ccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999 6677776665554332221110 11 111122334444444
Q ss_pred HHHHhhccCcHHHHHHHHHHHH
Q 037974 77 YTRMSDDLNTSHILTGAFLDAL 98 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv 98 (233)
.+ +-.|+++.+++.. |..++
T Consensus 717 ~e-~Y~~Y~f~kVv~~-lq~F~ 736 (937)
T KOG0433|consen 717 IE-LYNDYKFRKVVND-LQQFL 736 (937)
T ss_pred HH-HHHhccHHHHHHH-HHHHH
Confidence 43 5567888888877 75544
No 73
>PHA02754 hypothetical protein; Provisional
Probab=41.80 E-value=29 Score=23.20 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.4
Q ss_pred HhCCChhhhH-HHHHHhHhCCcEEeec
Q 037974 175 KKNKDFSKSD-QIRADLTRKGIALMDV 200 (233)
Q Consensus 175 Rk~Kdf~~AD-~IRd~L~~~GI~l~D~ 200 (233)
--+|+|.++- ++||.|.+.||-|.--
T Consensus 11 i~eK~Fke~MRelkD~LSe~GiYi~RI 37 (67)
T PHA02754 11 IMEKDFKEAMRELKDILSEAGIYIDRI 37 (67)
T ss_pred HHHhHHHHHHHHHHHHHhhCceEEEEE
Confidence 3468888774 6899999999988653
No 74
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=41.14 E-value=24 Score=32.34 Aligned_cols=29 Identities=14% Similarity=-0.157 Sum_probs=20.3
Q ss_pred CChHHHHHHhccCCCCCccCCCHH-HHHhH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIP-QYTGN 37 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e-~L~~A 37 (233)
++|++|||+|+.+.-.+.++|+.+ .+-.+
T Consensus 300 ~~PE~lr~l~~~~~P~~~~~~~~~~~i~~~ 329 (360)
T PF01921_consen 300 APPESLRYLMARTKPNKAKDFSFDLVIPRL 329 (360)
T ss_dssp S-HHHHHHHHHCS-TTS-EEE--STTHHHH
T ss_pred cCHHHHHHHHcccCCCcceEeccCcchHHH
Confidence 479999999999999999999998 55443
No 75
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=34.54 E-value=1.2e+02 Score=19.60 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=18.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Q 037974 73 RDEFYTRMSDDLNTSHILTGAFLDALKFIN 102 (233)
Q Consensus 73 ~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN 102 (233)
+.+|...+.-||+||.+ . |...+..+.
T Consensus 2 ~~~~~~~isHelr~PL~--~-i~~~~~~l~ 28 (68)
T PF00512_consen 2 KGEFLASISHELRNPLT--A-IRGYLELLE 28 (68)
T ss_dssp HHHHHHHHHHHHHHHHH--H-HHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH--H-HHHHHHHHH
Confidence 45788999999999954 3 444444433
No 76
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=33.03 E-value=61 Score=21.92 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=27.2
Q ss_pred hhHHHHHHhHhCCcEEeecCCCeeEEecCccch---hhhccchHH
Q 037974 182 KSDQIRADLTRKGIALMDVRKETIWRPCVPVEQ---EQEAPLVEK 223 (233)
Q Consensus 182 ~AD~IRd~L~~~GI~l~D~~~Gt~w~~~~~~~~---~~~~~~~~~ 223 (233)
..+.+.+-|..+|+.+.-. ++..|.+..|.-+ +.++-++|+
T Consensus 20 ~~~~i~~~L~~lg~~~~~~-~~~~~~v~vP~~R~Di~~~~DliEE 63 (70)
T PF03484_consen 20 SPEEIIKILKRLGFKVEKI-DGDTLEVTVPSYRFDIEHEEDLIEE 63 (70)
T ss_dssp -HHHHHHHHHHTT-EEEE--CTTEEEEEEETTSTT-SSHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEC-CCCEEEEEcCCCcCCcCcccHHHHH
Confidence 3567888899999999986 4556777777654 555555554
No 77
>PF06579 Ly-6_related: Caenorhabditis elegans ly-6-related protein; InterPro: IPR010558 This family consists of several Caenorhabditis elegans specific ly-6-related HOT and ODR proteins. These proteins are involved in the olfactory system. Odr-2 mutants are known to be defective in the ability to chemotax to odorants that are recognised by the two AWC olfactory neurons. Odr-2 encodes a membrane-associated protein related to the Ly-6 superfamily of GPI-linked signalling proteins [].
Probab=31.02 E-value=18 Score=28.09 Aligned_cols=18 Identities=6% Similarity=-0.258 Sum_probs=15.2
Q ss_pred HHHh-ccCCCCCccCCCHH
Q 037974 15 RTLL-LDIFWLNELFASIP 32 (233)
Q Consensus 15 R~~~-LstHYRspldfS~e 32 (233)
.|-. |+.+|+.|.|||+.
T Consensus 9 ~w~~~l~~~y~~P~nFTd~ 27 (129)
T PF06579_consen 9 LWPYGLSRIYNEPKNFTDR 27 (129)
T ss_pred HHHHHHHHHhcCccccccc
Confidence 4566 89999999999984
No 78
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=30.54 E-value=39 Score=31.70 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.4
Q ss_pred hhhhHHHH---HHhHhCCcEEeecCCCeeEEe
Q 037974 180 FSKSDQIR---ADLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 180 f~~AD~IR---d~L~~~GI~l~D~~~Gt~w~~ 208 (233)
+++||+|+ ++|..+|+.++.++||-..+.
T Consensus 338 vKEsDRi~a~a~eL~klG~~v~e~~Dgl~I~g 369 (428)
T COG0128 338 VKESDRIAAMATELRKLGVEVEETEDGLIITG 369 (428)
T ss_pred hcchhHHHHHHHHHHhcCcEEEecCCeEEEEC
Confidence 78999988 479999999999999865444
No 79
>PF08847 DUF1817: Domain of unknown function (DUF1817); InterPro: IPR014946 Members of this entry are functionally uncharacterised.
Probab=29.67 E-value=33 Score=27.32 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=12.9
Q ss_pred CCCCCCCCChHHHHHHhc
Q 037974 2 AARPGIILFPAFVRTLLL 19 (233)
Q Consensus 2 ~~~~~~~~~p~~lR~~~L 19 (233)
..+-||.|+|+++.+|++
T Consensus 93 s~~eGi~fnPEALEifvm 110 (150)
T PF08847_consen 93 SRKEGIQFNPEALEIFVM 110 (150)
T ss_pred ccccCceeCHHHHHHHHH
Confidence 346688888888877763
No 80
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=27.79 E-value=1.7e+02 Score=22.20 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHH-HHHH-HhhcC
Q 037974 68 CIKKLRDEFYTRMSDDLNTSHILTGAFLDA-LKFI-NNSKK 106 (233)
Q Consensus 68 ~~~~~~~~f~~AL~DDlNTp~Al~~~L~~l-v~~i-N~~~~ 106 (233)
.+..+...+.++|++ +++..|+.. ++.+ ...+ |.|+.
T Consensus 7 ~~~~~~~~~~~~~e~-~~f~~a~~~-i~~f~~~~~~n~Yl~ 45 (153)
T PF08264_consen 7 KLNELIKKVTEAYEN-YEFNKALKE-IMNFIWNDLSNWYLE 45 (153)
T ss_dssp HHHHHHHHHHHHHHT-T-HHHHHHH-HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455667778888887 999999999 9996 5566 77654
No 81
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.54 E-value=55 Score=22.36 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=15.9
Q ss_pred hHHHHHHhHhCCcEEeec
Q 037974 183 SDQIRADLTRKGIALMDV 200 (233)
Q Consensus 183 AD~IRd~L~~~GI~l~D~ 200 (233)
|+.|+++|.+.|+.+...
T Consensus 1 ~~~I~~~L~~~G~~v~~i 18 (68)
T PF07530_consen 1 CEEIKEELKDQGHPVRNI 18 (68)
T ss_pred CHHHHHHHHHcCCceEEE
Confidence 688999999999998863
No 82
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=24.04 E-value=41 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=21.8
Q ss_pred hhhhHHHHHHhH-----hCCcEEeecCCCeeEEec
Q 037974 180 FSKSDQIRADLT-----RKGIALMDVRKETIWRPC 209 (233)
Q Consensus 180 f~~AD~IRd~L~-----~~GI~l~D~~~Gt~w~~~ 209 (233)
-.-|++||++|. ..||.|.|+. |..|+..
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~-gr~~r~G 166 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTN-GRPWRLG 166 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEE-EETTEEC
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCC-CcEEecC
Confidence 467899999998 5999999986 5457766
No 83
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.18 E-value=69 Score=21.26 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.1
Q ss_pred ChhhhHHHHHHhHhCCcEEee
Q 037974 179 DFSKSDQIRADLTRKGIALMD 199 (233)
Q Consensus 179 df~~AD~IRd~L~~~GI~l~D 199 (233)
+.+..+.|.+.|.+.|+.+.|
T Consensus 48 ~~~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 48 DREDLAELKERLEALGYPYVD 68 (68)
T ss_pred CHHHHHHHHHHHHHcCCCccC
Confidence 456777888888888888765
No 84
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.89 E-value=1.1e+02 Score=15.92 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.2
Q ss_pred HhCCChhhhHHHHHHhHhCCc
Q 037974 175 KKNKDFSKSDQIRADLTRKGI 195 (233)
Q Consensus 175 Rk~Kdf~~AD~IRd~L~~~GI 195 (233)
.+.++++.|-.+-+++.+.||
T Consensus 11 ~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 11 CKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred HccchHHHHHHHHHHHhHCcC
Confidence 346678888888888888875
No 85
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=21.83 E-value=36 Score=16.64 Aligned_cols=8 Identities=13% Similarity=-0.110 Sum_probs=2.1
Q ss_pred CCccCCCH
Q 037974 24 LNELFASI 31 (233)
Q Consensus 24 RspldfS~ 31 (233)
-+|+|||.
T Consensus 3 dqP~dyS~ 10 (16)
T PF05972_consen 3 DQPIDYSL 10 (16)
T ss_dssp -----CCC
T ss_pred ccccchhh
Confidence 36888875
No 86
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=21.79 E-value=84 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=20.6
Q ss_pred hhhHHHHHHhHhCCcEE--eecCCCeeEEecCcc
Q 037974 181 SKSDQIRADLTRKGIAL--MDVRKETIWRPCVPV 212 (233)
Q Consensus 181 ~~AD~IRd~L~~~GI~l--~D~~~Gt~w~~~~~~ 212 (233)
+.||.|++.+.+.|+.. ..+.++..|.+.|-.
T Consensus 45 aia~~v~~~~k~~~~~~~~~EG~~~~~WillD~g 78 (99)
T TIGR00090 45 AIADNVEEELKEAGLKPLGVEGLEEGDWVLVDLG 78 (99)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCCCCEEEEECC
Confidence 56778888888888754 222344578776543
No 87
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.77 E-value=1.2e+02 Score=16.28 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.5
Q ss_pred hCCChhhhHHHHHHhHhCCcE
Q 037974 176 KNKDFSKSDQIRADLTRKGIA 196 (233)
Q Consensus 176 k~Kdf~~AD~IRd~L~~~GI~ 196 (233)
+.++++.|-.+-+++.+.||.
T Consensus 13 ~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 13 KAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HCCCHHHHHHHHHHHHHhCCC
Confidence 477899999999999888873
No 88
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [].; PDB: 3ZV0_D 3UAI_A 3U28_A 2AUS_C 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=20.60 E-value=62 Score=21.67 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=13.7
Q ss_pred HHhHhCCcEEeecCCCee
Q 037974 188 ADLTRKGIALMDVRKETI 205 (233)
Q Consensus 188 d~L~~~GI~l~D~~~Gt~ 205 (233)
+++...||+.-|.|.|++
T Consensus 37 ~~~i~~GvinlDKP~gPt 54 (59)
T PF08068_consen 37 EEYIKYGVINLDKPSGPT 54 (59)
T ss_dssp HHHHHTEEEEEEE-SSS-
T ss_pred HHHHhCCcEEeeCCCCCC
Confidence 457789999999999874
Done!