Query 037974
Match_columns 233
No_of_seqs 202 out of 1134
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.4E-35 2.2E-39 269.1 10.4 174 8-208 286-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.3E-33 4.4E-38 262.0 11.2 177 9-209 318-501 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.6E-29 5.5E-34 234.0 10.3 176 8-208 283-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 99.2 6E-11 2E-15 108.2 11.7 102 9-136 310-413 (414)
5 4arc_A Leucine--tRNA ligase; l 98.6 1.2E-07 4.2E-12 93.5 11.2 97 8-105 656-760 (880)
6 2csx_A Methionyl-tRNA syntheta 98.6 1.1E-07 3.8E-12 88.2 9.8 97 8-106 312-417 (497)
7 2x1l_A Methionyl-tRNA syntheta 98.5 8E-08 2.7E-12 89.7 6.1 97 8-106 327-437 (524)
8 1iq0_A Arginyl-tRNA synthetase 98.5 1.9E-07 6.7E-12 88.6 8.5 128 9-138 437-589 (592)
9 3u1f_A Methionyl-tRNA syntheta 98.4 2.4E-07 8.2E-12 86.7 7.0 97 8-106 340-449 (542)
10 2d5b_A Methionyl-tRNA syntheta 98.4 3.9E-07 1.3E-11 84.5 7.2 98 8-107 314-420 (500)
11 1wkb_A Leucyl-tRNA synthetase; 98.4 4.7E-07 1.6E-11 88.8 7.9 97 8-106 667-769 (810)
12 1rqg_A Methionyl-tRNA syntheta 98.3 1.5E-06 5E-11 84.4 9.8 98 8-107 361-472 (722)
13 1wz2_A Leucyl-tRNA synthetase; 98.2 2.6E-06 8.8E-11 85.1 7.9 97 8-106 667-769 (967)
14 1ile_A Ilers, isoleucyl-tRNA s 98.2 2.7E-06 9.4E-11 83.5 7.7 96 8-105 608-720 (821)
15 2v0c_A Aminoacyl-tRNA syntheta 98.1 1E-05 3.4E-10 80.1 9.8 96 8-105 654-759 (878)
16 2zue_A Arginyl-tRNA synthetase 98.1 2.4E-05 8E-10 74.8 11.6 128 9-138 471-626 (629)
17 1f7u_A Arginyl-tRNA synthetase 98.0 1.9E-05 6.6E-10 75.0 10.4 125 12-138 456-604 (607)
18 1ffy_A Isoleucyl-tRNA syntheta 98.0 9.7E-06 3.3E-10 80.5 8.5 90 8-99 612-713 (917)
19 3kfl_A Methionyl-tRNA syntheta 97.8 2.6E-05 8.8E-10 73.5 6.5 98 8-107 356-466 (564)
20 1gax_A Valrs, valyl-tRNA synth 97.7 3.1E-05 1.1E-09 76.4 6.0 96 8-105 545-650 (862)
21 3fnr_A Arginyl-tRNA synthetase 97.6 0.0004 1.4E-08 64.0 10.9 126 9-138 303-451 (464)
22 4dlp_A Aminoacyl-tRNA syntheta 97.5 0.00031 1.1E-08 65.6 9.2 98 8-107 338-449 (536)
23 3h99_A Methionyl-tRNA syntheta 96.9 0.0022 7.6E-08 60.1 8.3 97 8-106 362-469 (560)
24 1irx_A Lysyl-tRNA synthetase; 95.1 0.0092 3.2E-07 55.5 2.8 39 8-46 296-337 (523)
25 3aii_A Glutamyl-tRNA synthetas 91.9 0.083 2.8E-06 49.4 3.0 29 9-37 363-392 (553)
26 1qtq_A GLNRS, protein (glutami 52.6 12 0.00041 34.9 4.1 29 9-37 301-330 (553)
27 1ufz_A Hypothetical protein BA 48.6 52 0.0018 22.6 5.8 45 41-99 33-77 (83)
28 2yj1_B Alpha-beta-PUMA BH3 fol 35.6 8.5 0.00029 20.3 0.2 13 75-87 8-20 (26)
29 3tj5_B Metavinculin, SCA-famil 30.5 32 0.0011 18.3 1.9 20 84-103 7-26 (27)
30 2vof_B BCL-2-binding component 28.6 13 0.00045 19.6 0.2 14 74-87 9-22 (26)
31 2hz7_A Glutaminyl-tRNA synthet 26.8 50 0.0017 32.4 4.0 27 9-35 341-368 (851)
32 1e52_A Excinuclease ABC subuni 26.4 71 0.0024 20.6 3.5 33 161-193 23-55 (63)
33 3lh2_S 4E10_1VI7A_S0_002_N (T8 21.8 71 0.0024 20.8 2.9 35 179-213 15-51 (76)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=6.4e-35 Score=269.13 Aligned_cols=174 Identities=26% Similarity=0.353 Sum_probs=88.6
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
.|+|+++|||||++|||+|++||++.|.+| .+++|.++...+... .+ .....+...|.+||+||||
T Consensus 286 ~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~~------~~------~~~~~~~~~~~~a~~dD~n 353 (462)
T 3tqo_A 286 ESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLPVV------NH------EKTSSYTDRFYEAMDDDFN 353 (462)
T ss_dssp HSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC------------------CHHHHHHHHHHTBTCC
T ss_pred hcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhhc------cc------hhHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999998 566776665444321 00 0123567889999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHH
Q 037974 86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVL 165 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (233)
||.||++ ||++++.+|+.+.... ...+..+...+..++.||||.... +..++.. ....+.++.|+
T Consensus 354 t~~a~~~-l~~~~~~~n~~~~~~~------~~~~~~~~~~~~~~~~vlg~~~~~--~~~~~~~------~~~~~~~~~i~ 418 (462)
T 3tqo_A 354 TPIAFAL-LFEMVREINRFRDNNQ------IEKAAVLAAELKCLGNIFGLLQYS--PEQFLQG------AKKEADVQEIK 418 (462)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHGGGTCSCSC--HHHHC-------------------
T ss_pred hHHHHHH-HHHHHHHHhhhhcccc------HHHHHHHHHHHHHHHHhcCCCccc--hhhhhhc------cccccCHHHHH
Confidence 9999999 9999999999765431 223344567788899999998652 3333210 00122346899
Q ss_pred HHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEe
Q 037974 166 HLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 166 ~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~ 208 (233)
.||++|++||++|||++||+|||+|.++||.|+|||+||+|++
T Consensus 419 ~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 419 KLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWRQ 461 (462)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence 9999999999999999999999999999999999999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.3e-33 Score=261.99 Aligned_cols=177 Identities=23% Similarity=0.240 Sum_probs=123.7
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--H----HHHHHHHHHHhchhHhhhc-CCCCChhHHHHHHHHHHHHHHHHh
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--E----TITLQDCEVALSPFQEDAR-SGSITPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~----~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~AL~ 81 (233)
|+|+++|||||++|||+|++||++.|.+| . +++|.++...+........ ....+.. ...+..+..+|.+||+
T Consensus 318 yg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~am~ 396 (501)
T 3sp1_A 318 FSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFG-FSVEKEYYDSFVEKIS 396 (501)
T ss_dssp CCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTTSCS-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccccchh-hhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6 7888888776654332100 0000000 1234567889999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcH
Q 037974 82 DDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAE 161 (233)
Q Consensus 82 DDlNTp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
||||||.||++ ||++++.+|. . . .. +...+..++.||||... ..++.. . .......+
T Consensus 397 dDlnt~~al~~-l~~~~~~~~~--~-~--------~~---~~~~~~~~~~vlGl~~~----~~~~~~---~-~~~~~~~~ 453 (501)
T 3sp1_A 397 FDLNVAQGLAL-LWEIIKSDNL--S-F--------VS---KLRLAFIFDEIMSLNLR----EEILKN---L-QNHDVVID 453 (501)
T ss_dssp BTSCHHHHHHH-HHHHHHCSSS--C-H--------HH---HHHHHHHHHHHHCCCHH----HHHHHH---H-TTSCCCCC
T ss_pred hccCcHHHHHH-HHHHHHHhcc--C-H--------HH---HHHHHHHHHHHcCCCcc----cchhhc---c-cccchhhH
Confidence 99999999999 9999999861 1 1 11 22567778999999643 111110 0 00112235
Q ss_pred HHHHHHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEec
Q 037974 162 NDVLHLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRPC 209 (233)
Q Consensus 162 ~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~~ 209 (233)
+.|+.||++|++||++|||++||+|||+|.++||.|+|+|+||+|++.
T Consensus 454 ~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~l~D~~~g~~w~~~ 501 (501)
T 3sp1_A 454 ENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGTKVKRG 501 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-----------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCcEEEeC
Confidence 789999999999999999999999999999999999999999999863
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.96 E-value=1.6e-29 Score=233.99 Aligned_cols=176 Identities=23% Similarity=0.284 Sum_probs=87.7
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccC
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLN 85 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlN 85 (233)
+|+|++||||||++|||+|++||++.|.++ .+.++.+++..+.. . .+.+ .+..+...|.+||+||||
T Consensus 283 ~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~~---~---~~~d-----~l~~~~~~~~~am~dd~n 351 (461)
T 1li5_A 283 YYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDK---T---VAPA-----GGEAFEARFIEAMDDDFN 351 (461)
T ss_dssp TSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCT---T---SCCC-----SCHHHHHHHHHHHHBTSC
T ss_pred hCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc---C---CCHH-----HHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999988 45666666543321 0 0101 235667889999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCCCCCCchHHHHHHHHHHHHHHhhhcHHHHH
Q 037974 86 TSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLLPEGSTYSEVLQQLKDKALKRAELAENDVL 165 (233)
Q Consensus 86 Tp~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 165 (233)
||.|++. |+++++.+|+++.. . ...+..+...|..++.||||... .+..++.. +. ....+..+.|+
T Consensus 352 ~~~Al~~-l~~l~~~~N~~~~~-~------~~~~~~~~~~~~~~~~~lG~~~~--~~~~~~~~---~~-~~~~~~~~~~~ 417 (461)
T 1li5_A 352 TPEAYSV-LFDMAREVNRLKAE-D------MAAANAMASHLRKLSAVLGLLEQ--EPEAFLQS---GA-QADDSEVAEIE 417 (461)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHH-C------HHHHHHHHHHHHHHHTTTTCSCS--CHHHHC-------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHhc-c------HHHHHHHHHHHHHHHHHcCCCcc--Chhhhhhc---cc-ccccccHHHHH
Confidence 9999999 99999999998743 1 12344456788889999999543 23333210 00 00011014589
Q ss_pred HHHHHHHHHHhCCChhhhHHHHHHhHhCCcEEeecCCCeeEEe
Q 037974 166 HLIEERATAKKNKDFSKSDQIRADLTRKGIALMDVRKETIWRP 208 (233)
Q Consensus 166 ~Li~~R~~aRk~Kdf~~AD~IRd~L~~~GI~l~D~~~Gt~w~~ 208 (233)
.|+++|++||++|||++||+|||+|.++||.|+|+|+||+|++
T Consensus 418 ~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~g~~w~~ 460 (461)
T 1li5_A 418 ALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRR 460 (461)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCCCcEEEe
Confidence 9999999999999999999999999999999999999999984
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.22 E-value=6e-11 Score=108.15 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=75.4
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCc
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNT 86 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNT 86 (233)
|+|+++|||||++||+++++||++.+.++ .+++|.++...+. . + . ...+..+|.+||+|||||
T Consensus 310 ~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~~-------~-~---~----~~~~~~~v~~a~~d~~~~ 374 (414)
T 3c8z_A 310 VDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPE-------A-P---D----ATDVIARVRQYLADDLDT 374 (414)
T ss_dssp CCHHHHHHHHHTSCTTSCBCCCHHHHHHHHHHHHHHHHHHTSSC-------B-S---C----CHHHHHHHHHHHHBTCCH
T ss_pred CCcchheeEEEecCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcc-------c-h---h----HHHHHHHHHHHHHhcCCH
Confidence 89999999999999999999999999988 4555555542221 1 1 1 135677899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHHHHHHHHHccccCC
Q 037974 87 SHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIENEVKVVLDVLGLL 136 (233)
Q Consensus 87 p~Al~~~L~~lv~~iN~~~~~~~~~~~~~~~~l~~~~~~l~~~~~vLGl~ 136 (233)
|.|+++ |+++++.+|+. .+. +... ....+..+..||||.
T Consensus 375 ~~Al~~-i~~~~~~~n~~--~~~-----~~~~---~~~~~~~~d~vLg~~ 413 (414)
T 3c8z_A 375 PKALAA-LDGWCTDALSY--GGH-----DTES---PRLVATTVDALLGVD 413 (414)
T ss_dssp HHHHHH-HHHHHHHHHHH--CCS-----BSSH---HHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHHHHHHHHhc--cCC-----Chhh---HHHHHHHHHHHhCCC
Confidence 999999 99999999982 111 0111 124456677888874
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.64 E-value=1.2e-07 Score=93.50 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=70.1
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC--CC---CChhHHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS--GS---ITPAAEDCIKKLRDEFYTR 79 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~--~~---~~~~~~~~~~~~~~~f~~A 79 (233)
+|+++++|||+|++ ||+++++||++.++.+ .++++.++...+......... .. .+..+...+..+...|.++
T Consensus 656 kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a 735 (880)
T 4arc_A 656 RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDD 735 (880)
T ss_dssp HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998 9999999999999988 455555554322111000000 00 0122344567788899999
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHhhc
Q 037974 80 MSDDLNTSHILTGAFLDALKFINNSK 105 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~~iN~~~ 105 (233)
|+|+|++..|+++ |++++..+|++.
T Consensus 736 ~ed~~~fntAi~~-l~efvn~l~k~~ 760 (880)
T 4arc_A 736 IGRRQTFNTAIAA-IMELMNKLAKAP 760 (880)
T ss_dssp HHTTCCHHHHHHH-HHHHHHHHHTSC
T ss_pred HHhhhchhHHHHH-HHHHHHHHHhhh
Confidence 9998888889999 999999999864
No 6
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=98.62 E-value=1.1e-07 Score=88.18 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=68.7
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhHH--------HHHHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGNE--------TITLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYT 78 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A~--------~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 78 (233)
.|+++++||++|+ +||+++++||++.+.++. .+.+..+...+..........+.+..+...+..+...|.+
T Consensus 312 ~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~ 391 (497)
T 2csx_A 312 EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYEN 391 (497)
T ss_dssp HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4789999999998 899999999999998761 1112222222221111000112233455667788899999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 79 RMSDDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 79 AL~DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
+| ||||++.|++. |+++++..|.++.
T Consensus 392 ~~-~~~~~~~a~~~-l~~l~~~~n~y~~ 417 (497)
T 2csx_A 392 YM-EKVNFYKAIEE-ILKFTSYLNKYVD 417 (497)
T ss_dssp HH-TTTCHHHHHHH-HHHHHHHHHHHHH
T ss_pred HH-HccCHHHHHHH-HHHHHHHHHHHHH
Confidence 99 89999999999 9999999999864
No 7
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=98.53 E-value=8e-08 Score=89.72 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=66.5
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhHH----HHHHHHHHHHhchhH----hhhcC--CCC---ChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGNE----TITLQDCEVALSPFQ----EDARS--GSI---TPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A~----~~~l~~~~~~l~~~~----~~~~~--~~~---~~~~~~~~~~~~ 73 (233)
+|+++++||++|+ +||+++++||++.+.++. .+.|.++...+.... ..... ... +..+...+..+.
T Consensus 327 ~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~ 406 (524)
T 2x1l_A 327 TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALL 406 (524)
T ss_dssp HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTHH
T ss_pred HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHHH
Confidence 3789999999998 999999999999998761 111222222111111 00000 000 112334556778
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
..|.+|| ||||++.|++. |+++++..|.+++
T Consensus 407 ~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~ 437 (524)
T 2x1l_A 407 ERVREHF-DVPAMHLALEA-IWSVLGAANRYFS 437 (524)
T ss_dssp HHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHH
Confidence 8999999 89999999999 9999999998864
No 8
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=98.52 E-value=1.9e-07 Score=88.56 Aligned_cols=128 Identities=9% Similarity=0.003 Sum_probs=86.4
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhc--CCC-----C--ChhHHHHHHHHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDAR--SGS-----I--TPAAEDCIKKLRDEF 76 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~--~~~-----~--~~~~~~~~~~~~~~f 76 (233)
|.++++|||+|+.||++|++||++.+.+. ....++.++..+........ +.+ . +.++...+..+.+.|
T Consensus 437 vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v 516 (592)
T 1iq0_A 437 VALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAV 516 (592)
T ss_dssp HHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHH
T ss_pred hcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999876 22344444444433332211 000 0 112333445667778
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHhhcCCc-------hh---h---hhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 77 YTRMSDDLNTSHILTGAFLDALKFINNSKKQP-------KQ---Q---QLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~-------~~---~---~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
.+|+ ++++.+.++.. |++|++..|++.+.. .. . .......+..+...|...+.+|||...
T Consensus 517 ~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 517 LEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888 67999999999 999999999977654 21 0 011233445667778889999999754
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=98.45 E-value=2.4e-07 Score=86.74 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=67.2
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhhc-CC----CC---ChhHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDCEVALSPFQEDAR-SG----SI---TPAAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~~-~~----~~---~~~~~~~~~~~~~ 74 (233)
+|+++++|||+++ ++|+++++||++.+.+. ..++|.++...+........ .. .. +..+...+..+..
T Consensus 340 ~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~ 419 (542)
T 3u1f_A 340 EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPG 419 (542)
T ss_dssp HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHH
Confidence 4789999999997 78999999999998765 12344443322211111000 00 00 1223455667788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
.+.++| |+||++.|+.. |+++++.+|.+++
T Consensus 420 ~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~ 449 (542)
T 3u1f_A 420 TADHYY-LIPDIQKAIIA-VFDVLRAINAYVT 449 (542)
T ss_dssp HHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 899999 78999999999 9999999999875
No 10
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=98.40 E-value=3.9e-07 Score=84.47 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=66.1
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhHHHHH----HHHHHH----HhchhHhhhcCCCCChhHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGNETIT----LQDCEV----ALSPFQEDARSGSITPAAEDCIKKLRDEFYT 78 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A~~~~----l~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 78 (233)
+|+++++||++|+ +||+++++||++.+.++...+ +.++.. .+............+..+...+..+...|.+
T Consensus 314 ~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~ 393 (500)
T 2d5b_A 314 KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRP 393 (500)
T ss_dssp HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHH
T ss_pred hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4789999999998 899999999999998762111 112211 1111100000001112333345667888999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 79 RMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 79 AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
|| ||||++.|++. |+++++..|.++..
T Consensus 394 a~-~~~~~~~a~~~-l~~l~~~~n~y~~~ 420 (500)
T 2d5b_A 394 LV-RELKFHVALEE-AMAYVKALNRYINE 420 (500)
T ss_dssp HH-HTTCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HH-HccCHHHHHHH-HHHHHHHHHHHHHh
Confidence 99 89999999999 99999999998753
No 11
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.39 E-value=4.7e-07 Score=88.78 Aligned_cols=97 Identities=7% Similarity=-0.037 Sum_probs=69.6
Q ss_pred CCChHHHHHHhc-cCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCC---ChhHHHHHHHHHHHHHHHHh
Q 037974 8 ILFPAFVRTLLL-DIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSI---TPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 8 ~~~p~~lR~~~L-stHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~AL~ 81 (233)
+|+++++|||+| ++||+++++||++.+..+ .++++.++...+.... ....... +..+...+..+...|.++|
T Consensus 667 ~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~-~~~~~~~~~~d~~ll~~l~~~~~~v~~~~- 744 (810)
T 1wkb_A 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE-VKGNVELKDIDRWMLHRLNKAIKETTNAL- 744 (810)
T ss_dssp HHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC-CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc-CcccccCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 488999999997 799999999999999888 4566666554332110 0000011 1123345677888999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 82 DDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 82 DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
||||++.|+...++.+++.+|.++.
T Consensus 745 ~~~~~~~a~~~~~~~l~~~~n~yi~ 769 (810)
T 1wkb_A 745 EEFRTRTAVQWAFYSIMNDLRWYLR 769 (810)
T ss_dssp HTTCHHHHHHHHTHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999997515799999998864
No 12
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=98.34 E-value=1.5e-06 Score=84.36 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=68.8
Q ss_pred CCChHHHHHHhccC-CCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhh-hc-CCC----C---ChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDI-FWLNELFASIPQYTGN----ETITLQDCEVALSPFQED-AR-SGS----I---TPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Lst-HYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~-~~-~~~----~---~~~~~~~~~~~~ 73 (233)
+|+++++|||+|+. +|+++++||++.+.+. ..+++.++...+..+... .. ..+ . +..+...+..+.
T Consensus 361 ~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~ 440 (722)
T 1rqg_A 361 VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAF 440 (722)
T ss_dssp TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 58999999999997 9999999999998774 123344433222221111 00 011 0 123344566778
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
..|.++| ++|+++.|+.. |+++++..|.+++.
T Consensus 441 ~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~ 472 (722)
T 1rqg_A 441 KEVGELI-MNYRFKDALKR-VMSLASFGNRYFDH 472 (722)
T ss_dssp HHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHh
Confidence 8899999 79999999999 99999999998754
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=98.19 E-value=2.6e-06 Score=85.11 Aligned_cols=97 Identities=7% Similarity=-0.037 Sum_probs=69.5
Q ss_pred CCChHHHHHHhc-cCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcCCCC---ChhHHHHHHHHHHHHHHHHh
Q 037974 8 ILFPAFVRTLLL-DIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARSGSI---TPAAEDCIKKLRDEFYTRMS 81 (233)
Q Consensus 8 ~~~p~~lR~~~L-stHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~AL~ 81 (233)
+|+++++|||+| ++||+++++||++.+..+ .++++.++...+.... ....... +..+...+..+...|.++|
T Consensus 667 ~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~- 744 (967)
T 1wz2_A 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE-VKGNVELKDIDRWMLHRLNKAIKETTNAL- 744 (967)
T ss_dssp TTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHH-
Confidence 589999999997 799999999999999988 4566666554432110 0000011 1123345667788999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 82 DDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 82 DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
|+||++.|+...++.+++.+|.++.
T Consensus 745 e~~~f~~A~~~~~~~l~~~~n~Yi~ 769 (967)
T 1wz2_A 745 EEFRTRTAVQWAFYSIMNDLRWYLR 769 (967)
T ss_dssp HTTCHHHHHHHHTHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998615799999998764
No 14
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=98.17 E-value=2.7e-06 Score=83.52 Aligned_cols=96 Identities=5% Similarity=-0.111 Sum_probs=66.9
Q ss_pred CCChHHHHHHhccCC-CCCccCCCHHHHHhH---HHHHHHHHHHHhchh--HhhhcC------CCC---ChhHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIF-WLNELFASIPQYTGN---ETITLQDCEVALSPF--QEDARS------GSI---TPAAEDCIKKL 72 (233)
Q Consensus 8 ~~~p~~lR~~~LstH-YRspldfS~e~L~~A---~~~~l~~~~~~l~~~--~~~~~~------~~~---~~~~~~~~~~~ 72 (233)
+|+++++|||||++| |+++++||++.+.++ .+++|.++...+... ...... ... +..+...+..+
T Consensus 608 ~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~ 687 (821)
T 1ile_A 608 KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDL 687 (821)
T ss_dssp TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHH
Confidence 589999999999987 999999999999984 456666655432211 110000 000 11233456677
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHH--HHHHhhc
Q 037974 73 RDEFYTRMSDDLNTSHILTGAFLDAL--KFINNSK 105 (233)
Q Consensus 73 ~~~f~~AL~DDlNTp~Al~~~L~~lv--~~iN~~~ 105 (233)
...|.++|+ |||++.|++. |++++ ...|.++
T Consensus 688 ~~~v~~a~e-~~~f~~A~~~-l~~f~~~~~~n~Yl 720 (821)
T 1ile_A 688 IQRVTEALE-AYDPTTSARA-LRDFVVEDLSQWYV 720 (821)
T ss_dssp HHHHHHHHH-TTCHHHHHHH-HHHHHHHHSSTTTH
T ss_pred HHHHHHHHH-ccCHHHHHHH-HHHHHHHHHHHHHH
Confidence 889999995 9999999999 99999 5556544
No 15
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.09 E-value=1e-05 Score=80.06 Aligned_cols=96 Identities=8% Similarity=-0.037 Sum_probs=70.1
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhH-hhhcC------CCCChhHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQ-EDARS------GSITPAAEDCIKKLRDEFY 77 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~-~~~~~------~~~~~~~~~~~~~~~~~f~ 77 (233)
+|+++++|||+|+ ++|.++++||++.+..+ .++++.++........ ..... ...+..+...+..+...+.
T Consensus 654 ~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~ 733 (878)
T 2v0c_A 654 EQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVT 733 (878)
T ss_dssp HSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999998 99999999999999988 4566666543221110 00000 0011233445677888999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHhhc
Q 037974 78 TRMSDDLNTSHILTGAFLDALKFINNSK 105 (233)
Q Consensus 78 ~AL~DDlNTp~Al~~~L~~lv~~iN~~~ 105 (233)
++| ++|++..|++. |++++..+|++.
T Consensus 734 ~~~-e~~~f~~Ai~~-l~~f~~~l~k~~ 759 (878)
T 2v0c_A 734 EDL-EALRFNTAIAA-LMEFLNALYEYR 759 (878)
T ss_dssp HHH-HTTCHHHHHHH-HHHHHHHHHHHH
T ss_pred HHH-HcccHHHHHHH-HHHHHHHHhhhc
Confidence 999 89999999999 999999999874
No 16
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.07 E-value=2.4e-05 Score=74.76 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=80.5
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhh----h---------cCC----CCC--hhHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQED----A---------RSG----SIT--PAAE 66 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~----~---------~~~----~~~--~~~~ 66 (233)
|.+.++||++|+.||+++++||++.+.+. .-..++.++.++...... . ... ..+ .++.
T Consensus 471 vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~ 550 (629)
T 2zue_A 471 VGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELV 550 (629)
T ss_dssp HHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHH
T ss_pred cChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHH
Confidence 67889999999999999999999999854 111222222222111110 0 000 011 1233
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCch------hhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 67 DCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPK------QQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 67 ~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~------~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
..+..+...+..|+. +++.+.+... |++|++..|++.+... .........+..+...|...+.+|||...
T Consensus 551 ~~l~~fp~~v~~a~~-~~~p~~l~~y-l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 551 IMLSKFPRIVEQAGK-DVKPHLIAWF-ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHH-TTCTHHHHHH-HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHH-HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 445566666667765 7999999999 9999999998643211 10112344445667788889999999754
No 17
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.04 E-value=1.9e-05 Score=75.04 Aligned_cols=125 Identities=10% Similarity=0.061 Sum_probs=79.7
Q ss_pred HHHHHHhccCCCCCccCCCHHHHHhH---HHHHHHHHHHHhchhHhhhcC--------CC---C-Ch---hHHHHHHHHH
Q 037974 12 AFVRTLLLDIFWLNELFASIPQYTGN---ETITLQDCEVALSPFQEDARS--------GS---I-TP---AAEDCIKKLR 73 (233)
Q Consensus 12 ~~lR~~~LstHYRspldfS~e~L~~A---~~~~l~~~~~~l~~~~~~~~~--------~~---~-~~---~~~~~~~~~~ 73 (233)
.+|||++|++|||+|++|+++.|.+. .--.++.++.++..+.+...+ .+ . +. ++...+..+.
T Consensus 456 ~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp 535 (607)
T 1f7u_A 456 SAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYP 535 (607)
T ss_dssp HHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHH
T ss_pred HHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999876 112455554444443322100 00 0 11 2223334455
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC------chhhhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ------PKQQQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~------~~~~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+.+..|+. +++.+..... |++|++..|++.+. ...........+..+...|...+++|||...
T Consensus 536 ~vv~~a~~-~~~P~~l~~Y-l~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 536 DVLRNAIK-THEPTTVVTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHH-HCCHHHHHHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHH-hcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 55556655 7999999999 99999999985322 1111112344555667788889999999754
No 18
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=98.03 E-value=9.7e-06 Score=80.50 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=65.3
Q ss_pred CCChHHHHHHhccCCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhh----hcCCC------CChhHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIPQYTGN--ETITLQDCEVALSPFQED----ARSGS------ITPAAEDCIKKLRDE 75 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~----~~~~~------~~~~~~~~~~~~~~~ 75 (233)
+|+++++|||+++++|+++++||++.+.++ .+++|.++...+...... ....+ .+..+...+..+...
T Consensus 612 ~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~ 691 (917)
T 1ffy_A 612 QKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTAS 691 (917)
T ss_dssp HTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999987 566777665443211000 00000 011233456677888
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHH
Q 037974 76 FYTRMSDDLNTSHILTGAFLDALK 99 (233)
Q Consensus 76 f~~AL~DDlNTp~Al~~~L~~lv~ 99 (233)
|.++| ++|+++.|++. |++++.
T Consensus 692 v~~a~-e~~~f~~a~~~-l~~f~~ 713 (917)
T 1ffy_A 692 TINNY-ENFDYLNIYQE-VQNFIN 713 (917)
T ss_dssp HHHHH-HTTCHHHHHHH-HHHHHH
T ss_pred HHHHH-HccCHHHHHHH-HHHHHH
Confidence 99998 78999999999 999997
No 19
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=97.80 E-value=2.6e-05 Score=73.50 Aligned_cols=98 Identities=10% Similarity=-0.009 Sum_probs=68.2
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhhcC-CC-------CChhHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN----ETITLQDCEVALSPFQEDARS-GS-------ITPAAEDCIKKLRD 74 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~~~-~~-------~~~~~~~~~~~~~~ 74 (233)
.|+++++||++|+ +.+.++++||++.+.+. ..++|.++...+........+ .+ .+..+...+..+..
T Consensus 356 ~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~ 435 (564)
T 3kfl_A 356 EFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAG 435 (564)
T ss_dssp HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999 99999999999998764 223444444322111111000 00 01234455677788
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 75 EFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 75 ~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
.+.++|+ ++++..|+.. |+++++..|.+++.
T Consensus 436 ~v~~a~e-~~~~~~a~~~-i~~l~~~~n~Y~~~ 466 (564)
T 3kfl_A 436 TVDHYYC-LPDIQHALIA-IFDVLRSLNAYVTE 466 (564)
T ss_dssp HHHHHHH-TTCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHH-cccHHHHHHH-HHHHHHHHHHHHHh
Confidence 8999996 7999999999 99999999998753
No 20
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.72 E-value=3.1e-05 Score=76.41 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=67.2
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--HHHHHHHHHHHhchhHhhhcC--CCC---ChhHHHHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--ETITLQDCEVALSPFQEDARS--GSI---TPAAEDCIKKLRDEFYTR 79 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--~~~~l~~~~~~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~f~~A 79 (233)
+|+++++||++++ ++|+++++||++.+..+ .++++.++...+......... ... +..+...+..+...+.++
T Consensus 545 ~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a 624 (862)
T 1gax_A 545 RYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITAL 624 (862)
T ss_dssp HHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999998 49999999999999988 466676654433211110000 001 112345567788899999
Q ss_pred HhhccCcHHHHHHHHHHHHH--HHHhhc
Q 037974 80 MSDDLNTSHILTGAFLDALK--FINNSK 105 (233)
Q Consensus 80 L~DDlNTp~Al~~~L~~lv~--~iN~~~ 105 (233)
| +++++..|+.. |++++. ..|.|+
T Consensus 625 ~-e~~~f~~A~~~-l~~f~~~~~~n~Yi 650 (862)
T 1gax_A 625 Y-EALDLAQAARE-VYELVWSEFCDWYL 650 (862)
T ss_dssp H-TTTCHHHHHHH-HHHHHHHHTTTTHH
T ss_pred H-HccCHHHHHHH-HHHHHHHHhhHHHH
Confidence 9 88999999999 999983 345444
No 21
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.59 E-value=0.0004 Score=63.96 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=73.2
Q ss_pred CChHHHHHHhccCCCCCccCCCHHHHHhH----HHHHHHHHHHHhchhHhhhc-------CCC---C---ChhHHHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELFASIPQYTGN----ETITLQDCEVALSPFQEDAR-------SGS---I---TPAAEDCIKK 71 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspldfS~e~L~~A----~~~~l~~~~~~l~~~~~~~~-------~~~---~---~~~~~~~~~~ 71 (233)
|.++++|||+|+.+|+++++|+++.+.+. ..-.++.++..+....+... ..+ . +..+...+..
T Consensus 303 ~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~ 382 (464)
T 3fnr_A 303 IGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALN 382 (464)
T ss_dssp HCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHH
Confidence 56889999999999999999999988653 00012222222222111100 000 0 1122223334
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCCchh------hhhhhHHHHHHHHHHHHHHHccccCCCC
Q 037974 72 LRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQ------QQLSLIESLLKIENEVKVVLDVLGLLPE 138 (233)
Q Consensus 72 ~~~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~~~~------~~~~~~~~l~~~~~~l~~~~~vLGl~~~ 138 (233)
+.+.+.+|+ ++++...++.. |++|++..|++...... ........+. +. .|...+.+|||..+
T Consensus 383 ~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~-a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 383 LKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLFSLV-AL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHH-HH-HHHHHHHHTTCCCC
T ss_pred HHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHH-HH-HHHHHHHhcCCCch
Confidence 445444554 57999999999 99999999986432210 0111222222 33 77788999999865
No 22
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.50 E-value=0.00031 Score=65.59 Aligned_cols=98 Identities=11% Similarity=-0.066 Sum_probs=66.2
Q ss_pred CCChHHHHHHhcc-CCCCCccCCCHHHHHhH--------HHHHHHHHHHHhchhHhhhcCC--CC---ChhHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLD-IFWLNELFASIPQYTGN--------ETITLQDCEVALSPFQEDARSG--SI---TPAAEDCIKKLR 73 (233)
Q Consensus 8 ~~~p~~lR~~~Ls-tHYRspldfS~e~L~~A--------~~~~l~~~~~~l~~~~~~~~~~--~~---~~~~~~~~~~~~ 73 (233)
.|+++++||++++ +.+.++++||++.+.+. +.+.++.+...+.......... .. +..+...+..+.
T Consensus 338 ~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~ 417 (536)
T 4dlp_A 338 RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAAL 417 (536)
T ss_dssp HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 4788999999999 89999999999988764 1122222222222111100000 00 123445566777
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHhhcCC
Q 037974 74 DEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQ 107 (233)
Q Consensus 74 ~~f~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~~ 107 (233)
..+.++|+ ++++..|+.. |++++...|.++..
T Consensus 418 ~~v~~a~~-~~~~~~a~~~-l~~l~~~~n~Y~~~ 449 (536)
T 4dlp_A 418 ETARKAMD-DQALHLALGA-IFAVVAEANRYFAG 449 (536)
T ss_dssp HHHHHHHH-TTCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-ccCHHHHHHH-HHHHHHHHHHHHHh
Confidence 88888987 6999999999 99999999998754
No 23
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=96.92 E-value=0.0022 Score=60.10 Aligned_cols=97 Identities=4% Similarity=-0.053 Sum_probs=64.5
Q ss_pred CCChHHHHHHhccCCC-C-CccCCCHHHHHhHH--------HHHHHHHHHHhchhHhh-hcCCCCChhHHHHHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFW-L-NELFASIPQYTGNE--------TITLQDCEVALSPFQED-ARSGSITPAAEDCIKKLRDEF 76 (233)
Q Consensus 8 ~~~p~~lR~~~LstHY-R-spldfS~e~L~~A~--------~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~f 76 (233)
+|+++++||+|++... . +.++||++.+.+.. .+.+.++...+...... ......+..+...+..+...+
T Consensus 362 ~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v 441 (560)
T 3h99_A 362 HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVI 441 (560)
T ss_dssp HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHH
T ss_pred HcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHH
Confidence 5889999999998644 5 79999999876431 11122221111111000 001122345566677788889
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHhhcC
Q 037974 77 YTRMSDDLNTSHILTGAFLDALKFINNSKK 106 (233)
Q Consensus 77 ~~AL~DDlNTp~Al~~~L~~lv~~iN~~~~ 106 (233)
.++|+ ++++..|+.. |++++...|.++.
T Consensus 442 ~~~~e-~~~~~~a~~~-l~~l~~~~n~Yi~ 469 (560)
T 3h99_A 442 GEAWE-SREFGKAVRE-IMALADLANRYVD 469 (560)
T ss_dssp HHHHH-TTCHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHH-ccCHHHHHHH-HHHHHHHHHHHHH
Confidence 99995 7999999999 9999999999864
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=95.14 E-value=0.0092 Score=55.50 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=32.7
Q ss_pred CCChHHHHHHhccCCCCCccCCCHH-HHHhH--HHHHHHHHH
Q 037974 8 ILFPAFVRTLLLDIFWLNELFASIP-QYTGN--ETITLQDCE 46 (233)
Q Consensus 8 ~~~p~~lR~~~LstHYRspldfS~e-~L~~A--~~~~l~~~~ 46 (233)
.|.|+++||||+++||+++++||.+ .|.++ .++++.++.
T Consensus 296 ~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 296 VLEPGLVRFIYARHRPNKEIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp TSCHHHHHHHHHSSCTTSCEEECCSTTHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHhcCCCCCceeCcchhHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999 88887 455665433
No 25
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.86 E-value=0.083 Score=49.43 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=27.7
Q ss_pred CChHHHHHHhccCCC-CCccCCCHHHHHhH
Q 037974 9 LFPAFVRTLLLDIFW-LNELFASIPQYTGN 37 (233)
Q Consensus 9 ~~p~~lR~~~LstHY-RspldfS~e~L~~A 37 (233)
|+|++||.||++.|| |+|++||.+.|.++
T Consensus 363 ~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~ 392 (553)
T 3aii_A 363 IRPEAIRKLMVEIGVKIADSTMSWKKIYGL 392 (553)
T ss_dssp CCHHHHHHHHHHHTTCSSCBCCCHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCccccccHHHHHHH
Confidence 899999999999999 89999999999877
No 26
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=52.59 E-value=12 Score=34.90 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=25.4
Q ss_pred CChHHHHHHhccCCCCCccC-CCHHHHHhH
Q 037974 9 LFPAFVRTLLLDIFWLNELF-ASIPQYTGN 37 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspld-fS~e~L~~A 37 (233)
|+|++||.||++.||+.+-+ ++...|+++
T Consensus 301 y~PeAirnfl~~lG~s~~~~~~e~~~le~~ 330 (553)
T 1qtq_A 301 YTAASIREFCKRIGVTKQDNTIEMASLESC 330 (553)
T ss_dssp CCHHHHHHHHHHHCCCSSCCCBCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCccccchhhHHHH
Confidence 89999999999999998887 577777765
No 27
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=48.57 E-value=52 Score=22.58 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHHhchhHhhhcCCCCChhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 037974 41 TLQDCEVALSPFQEDARSGSITPAAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99 (233)
Q Consensus 41 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~AL~DDlNTp~Al~~~L~~lv~ 99 (233)
+|..|...++..... ..+. ..-+..+|..|||+-+||.. +++--+
T Consensus 33 rL~SCLd~iR~VlGd----sV~e---------~~Lv~ailk~dfD~ekALd~-vL~~~~ 77 (83)
T 1ufz_A 33 RLYSCLDHMREVLGD----AVPD---------DILTEAILKHKFDVQKALSV-VLEQDG 77 (83)
T ss_dssp HHHHHHHHHHHHTTT----TSCH---------HHHHHHHHHTTSCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcc----cCCH---------HHHHHHHHHhcCCHHHHHHH-HHhccc
Confidence 777777777655432 2221 12255889999999999999 887654
No 28
>2yj1_B Alpha-beta-PUMA BH3 foldamer; apoptosis, membrane protein, BH3 domain, autophagy; HET: HT7 B3E B3Q HR7; 2.24A {Synthetic construct}
Probab=35.64 E-value=8.5 Score=20.28 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHhhccCcH
Q 037974 75 EFYTRMSDDLNTS 87 (233)
Q Consensus 75 ~f~~AL~DDlNTp 87 (233)
....+|.||||.|
T Consensus 8 a~L~~m~~DL~A~ 20 (26)
T 2yj1_B 8 AXLRXMADXLNXQ 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHhcCC
Confidence 4568899997754
No 29
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=30.46 E-value=32 Score=18.30 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=13.9
Q ss_pred cCcHHHHHHHHHHHHHHHHh
Q 037974 84 LNTSHILTGAFLDALKFINN 103 (233)
Q Consensus 84 lNTp~Al~~~L~~lv~~iN~ 103 (233)
||.+.+++.++.+|...+|+
T Consensus 7 lnAA~~LS~sMQdLLn~vNa 26 (27)
T 3tj5_B 7 LNAATALSGSMQYLLNYVNA 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 56667777667777777764
No 30
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=28.57 E-value=13 Score=19.64 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=9.9
Q ss_pred HHHHHHHhhccCcH
Q 037974 74 DEFYTRMSDDLNTS 87 (233)
Q Consensus 74 ~~f~~AL~DDlNTp 87 (233)
..-..+|.||||.|
T Consensus 9 ~a~L~~~a~DLnA~ 22 (26)
T 2vof_B 9 GAQLRRIADDLNAQ 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhccc
Confidence 34567899998754
No 31
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=26.84 E-value=50 Score=32.40 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=17.2
Q ss_pred CChHHHHHHhccCCCCCccC-CCHHHHH
Q 037974 9 LFPAFVRTLLLDIFWLNELF-ASIPQYT 35 (233)
Q Consensus 9 ~~p~~lR~~~LstHYRspld-fS~e~L~ 35 (233)
|+|++||.||++.||...-+ +....|+
T Consensus 341 y~PeAIr~fl~~lG~s~~~~~~e~~~le 368 (851)
T 2hz7_A 341 VTPEAVRAFAAQIGVSRTNRTVDIAVYE 368 (851)
T ss_dssp CCHHHHHHHHHHSCCCSSCEEECHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCcccccHHHHH
Confidence 67777777777777765443 4555554
No 32
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=26.42 E-value=71 Score=20.61 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCChhhhHHHHHHhHhC
Q 037974 161 ENDVLHLIEERATAKKNKDFSKSDQIRADLTRK 193 (233)
Q Consensus 161 ~~~i~~Li~~R~~aRk~Kdf~~AD~IRd~L~~~ 193 (233)
...|..|-+.=.+|-++-+|+.|=.|||++..+
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L 55 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666666677788888999999999987764
No 33
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=21.80 E-value=71 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.4
Q ss_pred ChhhhHHHHHHhHhCCcEEeecCCC--eeEEecCccc
Q 037974 179 DFSKSDQIRADLTRKGIALMDVRKE--TIWRPCVPVE 213 (233)
Q Consensus 179 df~~AD~IRd~L~~~GI~l~D~~~G--t~w~~~~~~~ 213 (233)
+|.....|+..|...|+.|.|+.-+ .++.+..|..
T Consensus 15 dY~~~g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~ 51 (76)
T 3lh2_S 15 NWFDITGILWLLGQVDGKIINSDVQAFVLLRVALPAA 51 (76)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-
T ss_pred cccCHHHHHHHHHHCCCEEEcccccCeEEEEEEECHH
Confidence 6889999999999999999998655 3555555554
Done!