RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037974
         (233 letters)



>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
           {Escherichia coli [TaxId: 562]}
          Length = 87

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 64  AAEDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKFINNSKKQPKQQQLSLIESLLKIE 123
            A    +     F   M DD NT         D  + +N  K +      ++   L K+ 
Sbjct: 15  VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKAEDMAAANAMASHLRKL- 72

Query: 124 NEVKVVLDVLGLLPE 138
                   VLGLL +
Sbjct: 73  ------SAVLGLLEQ 81


>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 27.5 bits (61), Expect = 0.63
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 137 PEGSTYSEVLQQLKDKALKRAELAENDVLH---LIEERATAKKNKDFSKSDQ 185
           P  ST  +V+QQ   KA     +  N       L+EE      NK  +    
Sbjct: 23  PRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKS 74


>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
           [TaxId: 562]}
          Length = 159

 Score = 27.6 bits (61), Expect = 0.76
 Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 130 LDVLGL-LPEGSTYSEVLQQLKDKALKRAEL 159
           LD+  + + EG++ + V   +   +L  A +
Sbjct: 124 LDIERIDVDEGASGAMVGFNVHFHSLASASI 154


>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 144

 Score = 27.5 bits (60), Expect = 0.77
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 173 TAKKNKDFSKS-DQIRADLTRKGIALMDVRKETIWRPCVP 211
            A  N+   K+ +Q+  +L  K   L+D R +  +    P
Sbjct: 4   KATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQP 43


>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
           [TaxId: 562]}
          Length = 165

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 130 LDVLGL-LPEGSTYSEVLQQLKDKALKRAEL 159
           L    + +   S+ + V   L    +  AE+
Sbjct: 126 LKTEKIPVDSNSSGALVGYMLNANKIATAEI 156


>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin
          {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
          Length = 127

 Score = 25.6 bits (56), Expect = 3.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99
           + I+ + ++FY R+  D   S   +G  +  LK
Sbjct: 21 HEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLK 54


>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate
          (Paramecium caudatum) [TaxId: 5885]}
          Length = 116

 Score = 25.3 bits (55), Expect = 4.2
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99
          +  ++ +  +FY  +  D   +    G  +    
Sbjct: 9  QAAVQAVTAQFYANIQADATVATFFNGIDMPNQT 42


>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin
          {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId:
          1143]}
          Length = 123

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99
             +    D+FY R+  D    H      +   +
Sbjct: 10 TTAVDLAVDKFYERVLQDDRIKHFFADVDMAKQR 43


>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga
           (Chlamydomonas eugametos) [TaxId: 3054]}
          Length = 121

 Score = 24.6 bits (53), Expect = 7.9
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 66  EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALKF 100
            + ++   D+FY ++  D   S   +   +   + 
Sbjct: 9   REAVEAAVDKFYNKIVADPTVSTYFSNTDMKVQRS 43


>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin
          {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
          Length = 126

 Score = 24.2 bits (52), Expect = 9.4
 Identities = 4/34 (11%), Positives = 11/34 (32%)

Query: 66 EDCIKKLRDEFYTRMSDDLNTSHILTGAFLDALK 99
                +   FY ++++D     +     L   +
Sbjct: 10 AKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAE 43


>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 144

 Score = 24.5 bits (53), Expect = 9.5
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 147 QQLKDKALKRAELAENDVLHLIEERATAKKNKD-FSKS 183
             +++KA +   L  ++   L EERA A K K+  +++
Sbjct: 107 VNVREKAKQLVALLRDEDR-LREERAHALKTKEKLAQT 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,030
Number of extensions: 35132
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 17
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)