BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037976
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/412 (56%), Positives = 293/412 (71%), Gaps = 4/412 (0%)
Query: 25 SFRPKALVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFA 84
SFRP ALV+PV KD STLQY+T I QRTPLV L +DLGG+FLWVDC++ YVSS+Y
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 85 PCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTD 144
C ++ CSL+ + C +C PRPGC+NNTC + PEN + + G V+ DV S++STD
Sbjct: 63 RCRTSQCSLSGSIACGDCFN-GPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121
Query: 145 GKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXIC 204
G + G+VV+VP+ +F C+ + LL +LA GV GMAGLGRT+I +C
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 205 LSSSTEANGAVFFGDGPYVMLPGVDVS-KSLTYTPLILNPVTTATRTFTDLPSSDYFIEV 263
LS ST +N + FG+ PY LP + VS K+LTYTPL+ NPV+T+ + PS +YFI V
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 264 KSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELA--KVP 321
KSIKIN ++ +NTSLLSI G GGTKISTI PYTVLE+SIY+A EAF KE A +
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 322 RVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGF 381
RV V+PFGACF++ +I TR GP+VP IDLVLQS VW+I G+NSMV + +V+CLG
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 382 VDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSLLFRQTTCSNFNFMS 433
VDGG + RTSIVIGGHQLEDNL+QFDL T+R+GFS +LL +TTC+NFNF S
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/412 (56%), Positives = 293/412 (71%), Gaps = 4/412 (0%)
Query: 25 SFRPKALVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFA 84
SFRP ALV+PV KD STLQY+T I QRTPLV L +DLGG+FLWVDC++ YVSS+Y
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 85 PCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTD 144
C ++ CSL+ + C +C PRPGC+NNTC + PEN + + G V+ DV S++STD
Sbjct: 63 RCRTSQCSLSGSIACGDCFN-GPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTD 121
Query: 145 GKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXIC 204
G + G+VV+VP+ +F C+ + LL +LA GV GMAGLGRT+I +C
Sbjct: 122 GSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMC 181
Query: 205 LSSSTEANGAVFFGDGPYVMLPGVDVS-KSLTYTPLILNPVTTATRTFTDLPSSDYFIEV 263
LS ST +N + FG+ PY LP + VS K+LTYTPL+ NPV+T+ + PS +YFI V
Sbjct: 182 LSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGV 241
Query: 264 KSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELA--KVP 321
KSIKIN ++ +NTSLLSI G GGTKISTI PYTVLE+SIY+A EAF KE A +
Sbjct: 242 KSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNIT 301
Query: 322 RVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGF 381
RV V+PFGACF++ +I TR GP+VP IDLVLQS VW+I G+NSMV + +V+CLG
Sbjct: 302 RVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGV 361
Query: 382 VDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSLLFRQTTCSNFNFMS 433
VDGG + RTSIVIGGHQLEDNL+QFDL T+R+GFS +LL +TTC+NFNF S
Sbjct: 362 VDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 219/410 (53%), Gaps = 28/410 (6%)
Query: 31 LVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAP 90
+VLPV DGST + +++RTPL+ V + +DL G LWV+CE++Y S +Y CHS
Sbjct: 10 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 69
Query: 91 CSLANAPYCFECHGIKPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDG--KNP 148
CS AN C C RPGCH NTC L+ N I + G + DV +I +T G +
Sbjct: 70 CSRANTHQCLSCPAAS-RPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQL 128
Query: 149 GKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXICLSS 207
G +V+VP+ LF C+ SFL+ L + G+AGLG I CLS
Sbjct: 129 GPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSR 188
Query: 208 STEANGAVFFGDGPYVM--LPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKS 265
+ GA+ FGD P M D+ L +TPL + +Y + V S
Sbjct: 189 YPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTIT------------LQGEYNVRVNS 236
Query: 266 IKINGH-VIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVK 324
I+IN H V P+N +I GGT IST P+ VL+ S+Y+AF + F ++L K +VK
Sbjct: 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVK 296
Query: 325 PVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKA-VWSIFGANSMVQVKRDVLCLGFVD 383
V+PFG CFNS I A P +DLV+ VW I G + MVQ + V CLG ++
Sbjct: 297 SVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMN 350
Query: 384 GGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSLLFRQ-TTCSN-FNF 431
GG+ PR I +G QLE+NL+ FDL +R+GFS+S L C++ FNF
Sbjct: 351 GGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFNF 400
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 187/418 (44%), Gaps = 54/418 (12%)
Query: 31 LVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAP 90
++ PVTKD +T Y LV LD+ G +W CE + C S
Sbjct: 5 VLAPVTKDTATSLYTIPFHDGASLV-----LDVAGLLVWSTCEGGQSPAEIA---CSSPT 56
Query: 91 CSLANAPYCFECHGIKPRPGC----HNNTCNLLPENTINGISFFGGVSMDVASIQSTDGK 146
C LANA C P P C H+ C P N + G G + + +TDG
Sbjct: 57 CLLANAYPAPGC----PAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGN 112
Query: 147 NPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXICLS 206
P V+V ++L C+ S LL L +G TG+AGL + + +CL
Sbjct: 113 KPVSEVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLP 171
Query: 207 SSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSI 266
T G FG GP LP ++S+ YTPL+ + A ++I +SI
Sbjct: 172 --TGGPGVAIFGGGP---LPWPQFTQSMDYTPLVAKGGSPA-----------HYISARSI 215
Query: 267 KINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVP----- 321
K+ +P++ L+ GG +ST PY +L +Y ++AFTK LA P
Sbjct: 216 KVENTRVPISERALAT-----GGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAP 270
Query: 322 ---RVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLC 378
VKPV+PF C+++ +G G VP + L L W++ G NSMV VK C
Sbjct: 271 VARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSD-WAMTGKNSMVDVKPGTAC 329
Query: 379 LGF-----VDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSLLFRQTTCSNFNF 431
+ F VD G ++++GG Q+ED +L FD+ RLGF F T CS+FNF
Sbjct: 330 VAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLRLPHF--TGCSSFNF 385
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 182/403 (45%), Gaps = 52/403 (12%)
Query: 31 LVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAP 90
++ PVTKD +T Y LV LD+ G +W C+ + PC S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGGQPPAEI---PCSSPT 54
Query: 91 CSLANAPYCFECHGIKPRPGC----HNNTCNLLPENTINGISFFGGVSMDVASIQSTDGK 146
C LANA C P P C H+ C P N ++G G +S +TDG
Sbjct: 55 CLLANAYPAPGC----PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS 110
Query: 147 NPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXICLS 206
P V+V +L C+ S LL L +G TG+AGL + + +CL
Sbjct: 111 KPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLP 169
Query: 207 SSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSI 266
T G FG GP +P ++S+ YTPL+ T S ++I +SI
Sbjct: 170 --TGGPGVAIFGGGP---VPWPQFTQSMPYTPLV-----------TKGGSPAHYISARSI 213
Query: 267 KINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAK------- 319
+ +P+ L+ GG +ST PY +L +Y ++AFTK LA
Sbjct: 214 VVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAP 268
Query: 320 VPR-VKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLC 378
V R V+ V+PFG C+++ +G G AVP + L L W++ G NSMV VK+ C
Sbjct: 269 VARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQGTAC 327
Query: 379 LGFVD-----GGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFS 416
+ FV+ G ++++GG Q+ED +L FD+ RLGFS
Sbjct: 328 VAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 179/403 (44%), Gaps = 52/403 (12%)
Query: 31 LVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAP 90
++ PVTKD +T Y LV LD+ G +W C+ + PC S
Sbjct: 3 VLAPVTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCKGGQPPAEI---PCSSPT 54
Query: 91 CSLANAPYCFECHGIKPRPGC----HNNTCNLLPENTINGISFFGGVSMDVASIQSTDGK 146
C LANA C P P C H+ C P N ++G G +S +TDG
Sbjct: 55 CLLANAYPAPGC----PAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS 110
Query: 147 NPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIXXXXXXXXXXXXXXXXXICLS 206
P V+V +L C+ S LL L +G TG+AGL + + +CL
Sbjct: 111 KPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLP 169
Query: 207 SSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSI 266
T G FG GP +P ++S+ YTPL+ T S ++I +SI
Sbjct: 170 --TGGPGVAIFGGGP---VPWPQFTQSMPYTPLV-----------TKGGSPAHYISARSI 213
Query: 267 KINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAK------- 319
+ +P+ L+ GG +ST PY +L +Y ++AFTK LA
Sbjct: 214 VVGDTRVPVPEGALAT-----GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAP 268
Query: 320 -VPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLC 378
V V+PFG C+++ +G G AVP + L L W++ G NSMV VK+ C
Sbjct: 269 VARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTMTGKNSMVDVKQGTAC 327
Query: 379 LGFVD-----GGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFS 416
+ FV+ G ++++GG Q+ED +L FD+ RLGFS
Sbjct: 328 VAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 48 IKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSY-------TFAPCHSAP--CSLANAPY 98
I ++P V+L +L FL +D E V SY C P SL Y
Sbjct: 66 IASKSPFAAVQLAQELQLCFLRLDWETNAVDESYREFEEQRAEGECEYTPPTASLDPEVY 125
Query: 99 CFECHGIKPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVV 152
+G++ R G H C++ + G ++G S A +S N G+V+
Sbjct: 126 SRLWNGLRVRVGIHTGLCDIRYDEVTKGYDYYGRTSNMAARTESV--ANGGQVL 177
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 351 DLVLQSSKAVWSIFGANSMVQVKRDV-----LCLGFVDGGV 386
+LVL+ SKA+ + FG NS + V RDV + + V+GG+
Sbjct: 21 ELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGL 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,554,059
Number of Sequences: 62578
Number of extensions: 456721
Number of successful extensions: 940
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 11
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)