Query 037976
Match_columns 435
No_of_seqs 157 out of 1118
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.8E-57 6.1E-62 461.0 39.9 332 40-428 81-430 (431)
2 cd05489 xylanase_inhibitor_I_l 100.0 2.9E-57 6.4E-62 451.3 37.5 356 50-419 2-362 (362)
3 cd05472 cnd41_like Chloroplast 100.0 1.3E-54 2.9E-59 423.4 34.4 295 43-418 1-297 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 4.1E-53 8.9E-58 427.8 34.1 335 40-427 43-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 7E-51 1.5E-55 401.7 32.0 309 39-417 2-325 (325)
6 cd05478 pepsin_A Pepsin A, asp 100.0 4.6E-51 9.9E-56 401.6 30.3 307 34-417 2-317 (317)
7 PTZ00165 aspartyl protease; Pr 100.0 1.4E-50 3E-55 414.3 32.5 317 31-419 109-447 (482)
8 cd06098 phytepsin Phytepsin, a 100.0 2.1E-50 4.5E-55 396.8 31.7 302 33-417 1-317 (317)
9 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.1E-50 4.6E-55 398.3 30.2 297 42-418 2-323 (326)
10 cd05488 Proteinase_A_fungi Fun 100.0 2.1E-50 4.6E-55 397.3 29.8 309 33-417 1-320 (320)
11 cd05486 Cathespin_E Cathepsin 100.0 1.8E-50 4E-55 397.2 29.3 301 44-417 1-316 (316)
12 cd05476 pepsin_A_like_plant Ch 100.0 5.1E-50 1.1E-54 384.4 29.3 261 43-418 1-263 (265)
13 cd05477 gastricsin Gastricsins 100.0 9.7E-50 2.1E-54 392.4 31.9 304 41-417 1-317 (318)
14 cd05475 nucellin_like Nucellin 100.0 1.2E-49 2.7E-54 383.3 30.2 266 42-418 1-271 (273)
15 cd05485 Cathepsin_D_like Cathe 100.0 2.9E-49 6.2E-54 390.6 31.5 312 34-417 3-329 (329)
16 PTZ00147 plasmepsin-1; Provisi 100.0 4.9E-49 1.1E-53 400.0 30.4 314 26-418 123-449 (453)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 9.7E-49 2.1E-53 397.1 31.9 314 27-419 123-449 (450)
18 cd05487 renin_like Renin stimu 100.0 2.6E-48 5.5E-53 383.5 30.2 308 39-418 4-326 (326)
19 cd05473 beta_secretase_like Be 100.0 1.5E-47 3.3E-52 383.5 30.4 321 42-429 2-350 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 7.9E-47 1.7E-51 367.8 26.9 278 42-418 1-295 (295)
21 cd06097 Aspergillopepsin_like 100.0 1.1E-44 2.3E-49 349.9 25.9 267 44-417 1-278 (278)
22 cd05471 pepsin_like Pepsin-lik 100.0 1.2E-42 2.5E-47 335.6 28.7 274 44-417 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 1.2E-43 2.7E-48 348.3 21.6 303 43-417 1-316 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.7E-30 1.9E-34 226.2 14.9 159 44-219 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2.7E-27 5.9E-32 209.9 15.2 158 258-417 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 1.6E-18 3.5E-23 143.2 12.0 107 46-180 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.6 0.00017 3.8E-09 57.2 7.1 93 43-182 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.2 0.034 7.4E-07 46.6 8.6 102 33-182 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 94.7 0.24 5.1E-06 38.3 8.4 24 46-71 1-24 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.1 2.2 4.8E-05 35.7 11.7 25 391-415 100-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 93.1 0.74 1.6E-05 38.5 8.8 30 40-71 13-42 (124)
32 PF08284 RVP_2: Retroviral asp 91.6 0.84 1.8E-05 38.9 7.3 26 392-417 106-131 (135)
33 cd05484 retropepsin_like_LTR_2 89.6 0.36 7.8E-06 37.9 3.2 27 44-72 1-27 (91)
34 TIGR03698 clan_AA_DTGF clan AA 87.4 3.9 8.6E-05 33.2 8.0 23 391-413 85-107 (107)
35 PF13975 gag-asp_proteas: gag- 83.5 1.9 4.1E-05 32.3 4.0 31 40-72 5-35 (72)
36 TIGR02281 clan_AA_DTGA clan AA 82.8 3.3 7.1E-05 34.5 5.6 36 256-309 9-44 (121)
37 PF13650 Asp_protease_2: Aspar 82.3 2.1 4.5E-05 32.9 4.0 21 289-309 11-31 (90)
38 PF00077 RVP: Retroviral aspar 78.4 2.8 6.1E-05 33.2 3.7 26 45-72 7-32 (100)
39 cd05484 retropepsin_like_LTR_2 78.2 3.5 7.7E-05 32.2 4.1 30 265-309 4-33 (91)
40 PF13975 gag-asp_proteas: gag- 73.3 6.5 0.00014 29.3 4.2 30 265-309 12-41 (72)
41 cd05483 retropepsin_like_bacte 72.4 7.3 0.00016 30.1 4.6 21 289-309 15-35 (96)
42 cd06095 RP_RTVL_H_like Retrope 71.3 6.1 0.00013 30.6 3.8 20 290-309 12-31 (86)
43 PF12384 Peptidase_A2B: Ty3 tr 62.6 94 0.002 27.4 9.5 21 289-309 47-67 (177)
44 COG3577 Predicted aspartyl pro 60.0 19 0.00042 32.8 5.1 36 256-309 103-138 (215)
45 cd05482 HIV_retropepsin_like R 56.5 13 0.00029 29.0 3.1 24 47-72 2-25 (87)
46 cd06095 RP_RTVL_H_like Retrope 54.4 14 0.0003 28.5 3.0 23 48-72 3-25 (86)
47 PF00077 RVP: Retroviral aspar 54.2 17 0.00036 28.6 3.5 25 265-304 9-33 (100)
48 cd05475 nucellin_like Nucellin 49.7 23 0.0005 33.7 4.4 44 30-73 145-194 (273)
49 COG3577 Predicted aspartyl pro 49.4 67 0.0014 29.4 6.8 52 18-72 80-132 (215)
50 cd05481 retropepsin_like_LTR_1 48.6 21 0.00045 28.2 3.2 21 289-309 12-32 (93)
51 COG5550 Predicted aspartyl pro 46.7 15 0.00032 30.6 2.1 23 391-413 95-117 (125)
52 PF12384 Peptidase_A2B: Ty3 tr 43.3 29 0.00063 30.5 3.4 28 45-72 34-61 (177)
53 cd05471 pepsin_like Pepsin-lik 40.2 48 0.001 31.1 5.0 47 26-73 165-219 (283)
54 cd05476 pepsin_A_like_plant Ch 38.6 53 0.0012 31.0 4.9 47 26-72 129-192 (265)
55 PF09668 Asp_protease: Asparty 38.0 47 0.001 27.8 3.9 30 40-71 21-50 (124)
56 PF09668 Asp_protease: Asparty 37.5 47 0.001 27.8 3.8 30 265-309 28-57 (124)
57 cd05472 cnd41_like Chloroplast 37.5 38 0.00083 32.6 3.8 46 27-72 130-187 (299)
58 cd06098 phytepsin Phytepsin, a 35.7 50 0.0011 32.2 4.4 42 28-72 177-226 (317)
59 PLN03146 aspartyl protease fam 34.9 60 0.0013 33.4 4.9 43 30-72 267-323 (431)
60 PF07172 GRP: Glycine rich pro 31.3 19 0.00042 28.6 0.5 9 1-11 1-9 (95)
61 cd06096 Plasmepsin_5 Plasmepsi 30.6 64 0.0014 31.5 4.2 39 31-72 200-247 (326)
62 cd05474 SAP_like SAPs, pepsin- 27.4 87 0.0019 29.8 4.4 45 29-73 138-195 (295)
63 cd06097 Aspergillopepsin_like 26.4 66 0.0014 30.5 3.4 44 27-72 164-214 (278)
64 cd05485 Cathepsin_D_like Cathe 25.1 80 0.0017 30.9 3.7 42 28-72 179-226 (329)
65 cd05486 Cathespin_E Cathepsin 23.0 71 0.0015 31.0 2.9 40 30-72 168-214 (316)
66 TIGR03698 clan_AA_DTGF clan AA 22.7 1E+02 0.0022 24.9 3.2 26 46-71 2-32 (107)
67 cd05490 Cathepsin_D2 Cathepsin 21.9 87 0.0019 30.5 3.3 31 42-72 185-222 (325)
68 PF08284 RVP_2: Retroviral asp 21.9 1.1E+02 0.0024 25.8 3.5 29 41-71 19-47 (135)
69 KOG1339 Aspartyl protease [Pos 20.7 1.9E+02 0.004 29.3 5.5 46 26-72 227-284 (398)
70 cd05478 pepsin_A Pepsin A, asp 20.4 1E+02 0.0023 29.8 3.5 42 28-72 174-222 (317)
71 PF02160 Peptidase_A3: Caulifl 20.4 6.3E+02 0.014 23.1 8.1 26 391-417 92-117 (201)
72 PF15409 PH_8: Pleckstrin homo 20.3 2.8E+02 0.0061 21.7 5.1 29 288-316 57-88 (89)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.8e-57 Score=461.00 Aligned_cols=332 Identities=25% Similarity=0.435 Sum_probs=266.9
Q ss_pred CCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCC-------------CCCCCCcccCCCCccCCCCCCCC-CcccCCC
Q 037976 40 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKE-------------YVSSSYTFAPCHSAPCSLANAPY-CFECHGI 105 (435)
Q Consensus 40 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c-------------~~Sst~~~~~C~s~~C~~~~~~~-c~~~~~~ 105 (435)
.+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|+...... |.
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~----- 155 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS----- 155 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC-----
Confidence 357999999999999999999999999999999876 48899999999999998654322 31
Q ss_pred CCCCCCCCCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCC
Q 037976 106 KPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKI 185 (435)
Q Consensus 106 ~~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~ 185 (435)
.++.|.|.+.|+ +++.+.|.+++|+|+|++..+ +.++++++.|||++...+.. ....+||||||+.++
T Consensus 156 ------~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~ 223 (431)
T PLN03146 156 ------DENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPL 223 (431)
T ss_pred ------CCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC----CcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCc
Confidence 235699999994 888899999999999987532 23478999999999873221 235799999999999
Q ss_pred chhhhhhhhcCCCCceEEecCCCC---CCceeEEEcCCCcccCCCccCC-CCeeeeeceeCCCCccccccCCCCCCceEE
Q 037976 186 SLPSLFSSAFSFKRKFAICLSSST---EANGAVFFGDGPYVMLPGVDVS-KSLTYTPLILNPVTTATRTFTDLPSSDYFI 261 (435)
Q Consensus 186 s~~~ql~~~~~i~~~FS~~L~~~~---~~~G~l~fGg~d~~~~p~~~~~-g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v 261 (435)
|++.|+... +.++|||||.+.. ...|.|+||+.+. +. +.+.||||+.+. .+.+|.|
T Consensus 224 Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~-------~~~~~~~~tPl~~~~-----------~~~~y~V 283 (431)
T PLN03146 224 SLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAI-------VSGSGVVSTPLVSKD-----------PDTFYYL 283 (431)
T ss_pred cHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccc-------cCCCCceEcccccCC-----------CCCeEEE
Confidence 999999764 3469999997532 3479999998532 33 348999998642 2578999
Q ss_pred EEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCC
Q 037976 262 EVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRT 341 (435)
Q Consensus 262 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 341 (435)
.|++|+||++++.++...+. ..+.+++||||||++++||+++|++|+++|.+++...+.......+..||.....
T Consensus 284 ~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--- 358 (431)
T PLN03146 284 TLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--- 358 (431)
T ss_pred eEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC---
Confidence 99999999999887765543 2344689999999999999999999999999988532222223346789974321
Q ss_pred CCCCCcCeEEEEEeCCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEeecCCc
Q 037976 342 RAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSLLF 421 (435)
Q Consensus 342 ~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~~~~ 421 (435)
..+|+|+|+|+| ++++|++++|++...++..|+++.... +.+|||+.|||++|+|||++++|||||+
T Consensus 359 ---~~~P~i~~~F~G--a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~---- 425 (431)
T PLN03146 359 ---IKLPIITAHFTG--ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKP---- 425 (431)
T ss_pred ---CCCCeEEEEECC--CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeec----
Confidence 368999999987 899999999999877778899987543 3589999999999999999999999996
Q ss_pred ccCCCCC
Q 037976 422 RQTTCSN 428 (435)
Q Consensus 422 ~~~~c~~ 428 (435)
.+|.+
T Consensus 426 --~~C~~ 430 (431)
T PLN03146 426 --TDCTK 430 (431)
T ss_pred --CCcCc
Confidence 47865
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.9e-57 Score=451.29 Aligned_cols=356 Identities=52% Similarity=0.898 Sum_probs=276.1
Q ss_pred eCCCCCe-EEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcc-cCCCCCCCCCCCCCceeeee-cCCCC
Q 037976 50 QRTPLVP-VKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFE-CHGIKPRPGCHNNTCNLLPE-NTING 126 (435)
Q Consensus 50 vGtP~q~-~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~-~~~~~~~~~~~~~~c~~~~~-Y~~~~ 126 (435)
+|||-.+ +.|+|||||+++||+|.+| +|+||+.++|.++.|+...++.|.. | ....+..|.++.|.|... | .++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~-~sst~~~~~C~s~~C~~~~~~~~~~~~-~~~~~~~c~~~~C~y~~~~y-~~g 78 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG-HSSTYQTVPCSSSVCSLANRYHCPGTC-GGAPGPGCGNNTCTAHPYNP-VTG 78 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC-CcCCCCccCcCChhhccccccCCCccc-cCCCCCCCCCCcCeeEcccc-ccC
Confidence 6888888 9999999999999999987 5669999999999998777665542 2 112234677778999765 5 377
Q ss_pred ceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCCchhhhhhhhcCCCCceEEecC
Q 037976 127 ISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKISLPSLFSSAFSFKRKFAICLS 206 (435)
Q Consensus 127 ~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS~~L~ 206 (435)
+.+.|.+++|+|+|+..++.... .++++++.|||+......+....++||||||+.++|++.||..+...+++||+||+
T Consensus 79 s~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~ 157 (362)
T cd05489 79 ECATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLP 157 (362)
T ss_pred cEeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeC
Confidence 89999999999999865432111 23688999999988633334456899999999999999999887666789999999
Q ss_pred CCCCCceeEEEcCCCcccCCC-ccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEeecCCcccccccc
Q 037976 207 SSTEANGAVFFGDGPYVMLPG-VDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVIPMNTSLLSIDKK 285 (435)
Q Consensus 207 ~~~~~~G~l~fGg~d~~~~p~-~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~ 285 (435)
+.....|+|+||+.+..++++ .+..+.+.||||+.++. .+.+|.|+|++|+||++++.+++..+.....
T Consensus 158 ~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~----------~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~ 227 (362)
T cd05489 158 SSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR----------KSGEYYIGVTSIAVNGHAVPLNPTLSANDRL 227 (362)
T ss_pred CCCCCCeeEEECCCchhcccccccccCCccccccccCCC----------CCCceEEEEEEEEECCEECCCCchhcccccc
Confidence 764558999999987532210 01247899999987642 2479999999999999999887666554445
Q ss_pred CCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCC-CCCccccccCCCCCCCCCCCcCeEEEEEeCCceEEEEc
Q 037976 286 GFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPV-SPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVWSIF 364 (435)
Q Consensus 286 g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~l~ 364 (435)
+.+++||||||++++||+++|++|.+++.+++...+..... ...+.||.............+|+|+|+|+|++++|+|+
T Consensus 228 ~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~ 307 (362)
T cd05489 228 GPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIF 307 (362)
T ss_pred CCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEc
Confidence 56789999999999999999999999999887533322221 12368997543221111357999999998645999999
Q ss_pred CCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEeecC
Q 037976 365 GANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSSL 419 (435)
Q Consensus 365 ~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~~ 419 (435)
|++|+++..++..|++|...+....+.||||+.|||++|+|||++++|||||++|
T Consensus 308 ~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 308 GANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred CCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 9999998877789999987653224579999999999999999999999999864
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-54 Score=423.36 Aligned_cols=295 Identities=26% Similarity=0.488 Sum_probs=237.8
Q ss_pred eEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeec
Q 037976 43 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPEN 122 (435)
Q Consensus 43 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y 122 (435)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------~~~~i~Y 40 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------CLYQVSY 40 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------------------CeeeeEe
Confidence 699999999999999999999999999987542 4688999
Q ss_pred CCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCCchhhhhhhhcCCCCceE
Q 037976 123 TINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKISLPSLFSSAFSFKRKFA 202 (435)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS 202 (435)
+ +++.++|.+++|+|+|++.. +++++.|||+.... +.....+||||||+..++++.|+..+. +++||
T Consensus 41 g-~Gs~~~G~~~~D~v~ig~~~--------~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~~~--~~~FS 107 (299)
T cd05472 41 G-DGSYTTGDLATDTLTLGSSD--------VVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTASSY--GGVFS 107 (299)
T ss_pred C-CCceEEEEEEEEEEEeCCCC--------ccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhHhh--cCceE
Confidence 4 88888999999999998741 57889999998873 333478999999999999999987653 48999
Q ss_pred EecCCCC-CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEeecCCcccc
Q 037976 203 ICLSSST-EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVIPMNTSLLS 281 (435)
Q Consensus 203 ~~L~~~~-~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~ 281 (435)
+||.+.. ...|+|+|||+|+ . .+++.|+||+.++. .+.+|.|+|++|+|+++.+.+++..
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~-----~--~g~l~~~pv~~~~~----------~~~~y~v~l~~i~vg~~~~~~~~~~-- 168 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAAS-----V--PAGASFTPMLSNPR----------VPTFYYVGLTGISVGGRRLPIPPAS-- 168 (299)
T ss_pred EEccCCCCCCCceEEeCCccc-----c--CCCceECCCccCCC----------CCCeEEEeeEEEEECCEECCCCccc--
Confidence 9998753 4579999999985 2 68899999987531 2468999999999999987654321
Q ss_pred ccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEEEeCCceEE
Q 037976 282 IDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAVW 361 (435)
Q Consensus 282 ~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~ 361 (435)
.....+||||||++++||+++|++|.+++.++..+..+......+..|+..+... ...+|+|+|+|++ ++++
T Consensus 169 ---~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~-g~~~ 240 (299)
T cd05472 169 ---FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG-GADV 240 (299)
T ss_pred ---cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCc----CCccCCEEEEECC-CCEE
Confidence 1246799999999999999999999999988764333222223344698765322 1479999999985 4899
Q ss_pred EEcCCCeEEEe-CCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEeec
Q 037976 362 SIFGANSMVQV-KRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSS 418 (435)
Q Consensus 362 ~l~~~~y~~~~-~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~ 418 (435)
+|++++|++.. ..+..|+++..... ..+.+|||+.|||++|+|||++++|||||++
T Consensus 241 ~l~~~~y~~~~~~~~~~C~~~~~~~~-~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 241 ELDASGVLYPVDDSSQVCLAFAGTSD-DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred EeCcccEEEEecCCCCEEEEEeCCCC-CCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 99999999843 34678998876532 2357899999999999999999999999964
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-53 Score=427.85 Aligned_cols=335 Identities=31% Similarity=0.505 Sum_probs=272.1
Q ss_pred CCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCC--------------CCCCCCcccCCCCccCCCCCCCCCcccCCC
Q 037976 40 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKE--------------YVSSSYTFAPCHSAPCSLANAPYCFECHGI 105 (435)
Q Consensus 40 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c--------------~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~ 105 (435)
.+++|+++|.||||||+|.|+|||||+++||||.+| .+|+||+.+.|.+..|...... |
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-~------ 115 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-C------ 115 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-c------
Confidence 468999999999999999999999999999998776 2678899999999999876543 2
Q ss_pred CCCCCCCCCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcccc-CCcceeeecCCCC
Q 037976 106 KPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLA-KGVTGMAGLGRTK 184 (435)
Q Consensus 106 ~~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~-~~~~GIlGLg~~~ 184 (435)
+.++.|.|.+.|+ +++.++|++++|+|++++.+ .+.+++++|||+..+.+.... ...+||||||+.+
T Consensus 116 -----~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~ 183 (398)
T KOG1339|consen 116 -----SPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGS 183 (398)
T ss_pred -----ccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCC
Confidence 2567899999994 88999999999999999842 136778999999998543111 4689999999999
Q ss_pred CchhhhhhhhcCCCCceEEecCCCCC---CceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEE
Q 037976 185 ISLPSLFSSAFSFKRKFAICLSSSTE---ANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFI 261 (435)
Q Consensus 185 ~s~~~ql~~~~~i~~~FS~~L~~~~~---~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v 261 (435)
+|+++|+.......++||+||.+... .+|.|+||+.+. .++.+.+.|+||+.+. +.+|.|
T Consensus 184 ~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~-----~~~~~~l~~tPl~~~~------------~~~y~v 246 (398)
T KOG1339|consen 184 LSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDS-----SHYTGSLTYTPLLSNP------------STYYQV 246 (398)
T ss_pred ccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcc-----cCcCCceEEEeeccCC------------CccEEE
Confidence 99999999877665689999998742 479999999986 4567889999999864 259999
Q ss_pred EEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCC
Q 037976 262 EVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRT 341 (435)
Q Consensus 262 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 341 (435)
.|++|+|+++. .+++..+.. +..++|+||||++++||.++|++|++++.+... . .......+..|+......
T Consensus 247 ~l~~I~vgg~~-~~~~~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~-~~~~~~~~~~C~~~~~~~-- 318 (398)
T KOG1339|consen 247 NLDGISVGGKR-PIGSSLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V-VGTDGEYFVPCFSISTSG-- 318 (398)
T ss_pred EEeEEEECCcc-CCCcceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c-cccCCceeeecccCCCCc--
Confidence 99999999977 555554432 147899999999999999999999999988630 0 111123456899765321
Q ss_pred CCCCCcCeEEEEEeCCceEEEEcCCCeEEEeCCCeE-EEEEEeCCCCCCCeeeechhhhcccEEEEECC-CCEEEEeecC
Q 037976 342 RAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVL-CLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLG-TARLGFSSSL 419 (435)
Q Consensus 342 ~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~-~~rIGfa~~~ 419 (435)
..+|.|+|+|++ ++.|.+++++|++....+.. |++++...+.. ..||||+.|||+++++||.. ++|||||+++
T Consensus 319 ---~~~P~i~~~f~~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~ 393 (398)
T KOG1339|consen 319 ---VKLPDITFHFGG-GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPAL 393 (398)
T ss_pred ---ccCCcEEEEECC-CcEEEeCccceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEecccc
Confidence 249999999996 59999999999998876444 99888765421 58999999999999999999 9999999864
Q ss_pred CcccCCCC
Q 037976 420 LFRQTTCS 427 (435)
Q Consensus 420 ~~~~~~c~ 427 (435)
.+|+
T Consensus 394 ----~~c~ 397 (398)
T KOG1339|consen 394 ----TNCS 397 (398)
T ss_pred ----ccCC
Confidence 4554
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=7e-51 Score=401.72 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=235.9
Q ss_pred CCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCcee
Q 037976 39 GSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNL 118 (435)
Q Consensus 39 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~ 118 (435)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|... +..|.....+.+. .++++....|.|
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~C~~~~~y~~~------~SsT~~~~~~~~ 66 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLL---------DIACWLHHKYNSS------KSSTYVKNGTEF 66 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCC---------CccccCcCcCCcc------cCcceeeCCcEE
Confidence 3578999999999999999999999999999999877311 1245544444432 233345567899
Q ss_pred eeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCCCc------hhhhh
Q 037976 119 LPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTKIS------LPSLF 191 (435)
Q Consensus 119 ~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~s------~~~ql 191 (435)
.+.|+ ++ ++.|.+++|+|+|++. +++++.|||++...+.. .....+||||||++.++ +..+|
T Consensus 67 ~i~Yg-~G-~~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 67 AIQYG-SG-SLSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred EEEEC-Cc-EEEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 99994 55 5899999999999874 78899999998763221 12457999999997665 34577
Q ss_pred hhhcCC-CCceEEecCCCC--CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEE
Q 037976 192 SSAFSF-KRKFAICLSSST--EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKI 268 (435)
Q Consensus 192 ~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 268 (435)
.+++.+ +++||+||.++. ..+|+|+|||+|+ .++.+++.|+|+.. +.+|.|+|++|+|
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~-----~~~~g~l~~~~~~~--------------~~~w~v~l~~i~v 196 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP-----KYYTGDLHYVNVTR--------------KAYWQIHMDQVDV 196 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCH-----HHcCCceEEEEcCc--------------ceEEEEEeeEEEE
Confidence 777777 578999998653 3479999999986 56789999999864 4689999999999
Q ss_pred cCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcC
Q 037976 269 NGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVP 348 (435)
Q Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 348 (435)
++...... ....+||||||+++++|++++++|.+++... +... .....+|+.. ..+|
T Consensus 197 g~~~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~-~~~~~~C~~~---------~~~P 253 (325)
T cd05490 197 GSGLTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQ-GEYMIDCEKI---------PTLP 253 (325)
T ss_pred CCeeeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc----cccC-CCEEeccccc---------ccCC
Confidence 98643211 1357999999999999999999998877431 1111 1223578753 3689
Q ss_pred eEEEEEeCCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 349 QIDLVLQSSKAVWSIFGANSMVQVKR--DVLCL-GFVDGGV--HPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 349 ~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
+|+|+|++ +.++|+|++|+++... ...|+ ++..... .....||||+.|||++|+|||++++|||||+
T Consensus 254 ~i~f~fgg--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 254 VISFSLGG--KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CEEEEECC--EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999976 8999999999997543 35798 5554321 1235799999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.6e-51 Score=401.63 Aligned_cols=307 Identities=19% Similarity=0.216 Sum_probs=240.1
Q ss_pred eeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCC
Q 037976 34 PVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHN 113 (435)
Q Consensus 34 p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~ 113 (435)
||.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..| ....|...+.+.+. .++++..
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C-----------~~~~c~~~~~f~~~------~Sst~~~ 63 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYC-----------SSQACSNHNRFNPR------QSSTYQS 63 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCC-----------CcccccccCcCCCC------CCcceee
Confidence 5665 4589999999999999999999999999999998765 33345544444332 2333445
Q ss_pred CCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccc-cCCcceeeecCCCCCc------
Q 037976 114 NTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDL-AKGVTGMAGLGRTKIS------ 186 (435)
Q Consensus 114 ~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~-~~~~~GIlGLg~~~~s------ 186 (435)
..|.+.+.|+ +++ +.|.+++|+|++++. +++++.|||++....... ....+||||||++.++
T Consensus 64 ~~~~~~~~yg-~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 132 (317)
T cd05478 64 TGQPLSIQYG-TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATP 132 (317)
T ss_pred CCcEEEEEEC-Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCC
Confidence 6689999994 554 899999999999874 788999999987632211 2347999999987543
Q ss_pred hhhhhhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeE
Q 037976 187 LPSLFSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKS 265 (435)
Q Consensus 187 ~~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~ 265 (435)
+..+|.+++.| +++||+||.+....+|+|+|||+|. .++.+++.|+|+.. +.+|.|.+++
T Consensus 133 ~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~-----~~~~g~l~~~p~~~--------------~~~w~v~l~~ 193 (317)
T cd05478 133 VFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDP-----SYYTGSLNWVPVTA--------------ETYWQITVDS 193 (317)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCH-----HHccCceEEEECCC--------------CcEEEEEeeE
Confidence 66788888887 5889999998755679999999986 56789999999964 4689999999
Q ss_pred EEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCC
Q 037976 266 IKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGP 345 (435)
Q Consensus 266 i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 345 (435)
|+|+++.+.... +..+||||||++++||+++|++|.+++..... . ......+|+.. .
T Consensus 194 v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~---~--~~~~~~~C~~~---------~ 250 (317)
T cd05478 194 VTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN---Q--NGEMVVNCSSI---------S 250 (317)
T ss_pred EEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc---c--CCcEEeCCcCc---------c
Confidence 999999875321 35799999999999999999999887743221 1 11122377753 3
Q ss_pred CcCeEEEEEeCCceEEEEcCCCeEEEeCCCeEEEE-EEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 346 AVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLG-FVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 346 ~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~C~~-~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
.+|.|+|+|+| ++++|||++|+.+. +..|+. +...+. .+.||||+.|||++|+|||++++|||||+
T Consensus 251 ~~P~~~f~f~g--~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 251 SMPDVVFTING--VQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cCCcEEEEECC--EEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 68999999976 89999999999865 468985 554432 35799999999999999999999999995
No 7
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.4e-50 Score=414.32 Aligned_cols=317 Identities=17% Similarity=0.201 Sum_probs=239.7
Q ss_pred EEEeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCC
Q 037976 31 LVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPG 110 (435)
Q Consensus 31 ~~~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~ 110 (435)
...||.+ ..+.+|+++|+||||||+|.|+|||||++|||||..| .+..|.....+.+.. +++.+..
T Consensus 109 ~~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C-----------~~~~C~~~~~yd~s~--SSTy~~~ 174 (482)
T PTZ00165 109 LQQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKEC-----------KSGGCAPHRKFDPKK--SSTYTKL 174 (482)
T ss_pred cceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhc-----------CcccccccCCCCccc--cCCcEec
Confidence 4567664 6789999999999999999999999999999998765 444566555555442 2222211
Q ss_pred CCCC-CceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCCC---
Q 037976 111 CHNN-TCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTKI--- 185 (435)
Q Consensus 111 ~~~~-~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~--- 185 (435)
+.+. ...+.+.| +.+++.|.+++|+|++++. +++++.|||++...... ....+|||||||++.+
T Consensus 175 ~~~~~~~~~~i~Y--GsGs~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 175 KLGDESAETYIQY--GTGECVLALGKDTVKIGGL---------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred CCCCccceEEEEe--CCCcEEEEEEEEEEEECCE---------EEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 1111 12567898 3456789999999999874 78999999998763222 2246899999999765
Q ss_pred ------chhhhhhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCc
Q 037976 186 ------SLPSLFSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSD 258 (435)
Q Consensus 186 ------s~~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~ 258 (435)
++..+|.+++.+ +++||+||.++...+|+|+|||+|+.+. ...+++.|+|+.. ..+
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~---~~~g~i~~~Pv~~--------------~~y 306 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYT---LEGHKIWWFPVIS--------------TDY 306 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHc---CCCCceEEEEccc--------------cce
Confidence 345577887777 5889999987655689999999986321 0146899999975 469
Q ss_pred eEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCC
Q 037976 259 YFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHI 338 (435)
Q Consensus 259 y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~ 338 (435)
|.|.+++|+|+++.+.... +...+|+||||+++++|++++++|.+++.. ..+|...
T Consensus 307 W~i~l~~i~vgg~~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------------~~~C~~~--- 362 (482)
T PTZ00165 307 WEIEVVDILIDGKSLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKIPL-------------EEDCSNK--- 362 (482)
T ss_pred EEEEeCeEEECCEEeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHcCC-------------ccccccc---
Confidence 9999999999998766431 135799999999999999999988776531 1268764
Q ss_pred CCCCCCCCcCeEEEEEeCC---ceEEEEcCCCeEEEe----CCCeEEE-EEEeCCC--CCCCeeeechhhhcccEEEEEC
Q 037976 339 GRTRAGPAVPQIDLVLQSS---KAVWSIFGANSMVQV----KRDVLCL-GFVDGGV--HPRTSIVIGGHQLEDNLLQFDL 408 (435)
Q Consensus 339 ~~~~~~~~~P~i~f~f~g~---~~~~~l~~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvFD~ 408 (435)
..+|+|+|+|++. .+++.|+|++|+++. ..+..|+ ++...+. ..++.||||++|||+||+|||.
T Consensus 363 ------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~ 436 (482)
T PTZ00165 363 ------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDR 436 (482)
T ss_pred ------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeC
Confidence 3689999999861 258999999999974 1346897 6765431 1246899999999999999999
Q ss_pred CCCEEEEeecC
Q 037976 409 GTARLGFSSSL 419 (435)
Q Consensus 409 ~~~rIGfa~~~ 419 (435)
+++|||||++.
T Consensus 437 ~n~rIGfA~a~ 447 (482)
T PTZ00165 437 DHMMVGLVPAK 447 (482)
T ss_pred CCCEEEEEeec
Confidence 99999999863
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.1e-50 Score=396.82 Aligned_cols=302 Identities=18% Similarity=0.243 Sum_probs=233.2
Q ss_pred EeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCC
Q 037976 33 LPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCH 112 (435)
Q Consensus 33 ~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~ 112 (435)
+||.+ ..+.+|+++|+||||+|++.|+|||||+++||+|.+|.. +..|.....+.+.. ++++.
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~~------SsT~~ 63 (317)
T cd06098 1 VALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSSK------SSTYK 63 (317)
T ss_pred Ccccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCccc------CCCcc
Confidence 35664 668999999999999999999999999999999987631 23465555554432 33345
Q ss_pred CCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCc-cccCCcceeeecCCCCCch----
Q 037976 113 NNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLT-DLAKGVTGMAGLGRTKISL---- 187 (435)
Q Consensus 113 ~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s~---- 187 (435)
...+.+.+.|+ ++ .+.|.+++|+|++++. +++++.|||++..... ......+||||||+...+.
T Consensus 64 ~~~~~~~i~Yg-~G-~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 64 KNGTSASIQYG-TG-SISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred cCCCEEEEEcC-Cc-eEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 55678899993 44 5899999999999874 7889999999865321 1124689999999976553
Q ss_pred --hhhhhhhcCC-CCceEEecCCCC--CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEE
Q 037976 188 --PSLFSSAFSF-KRKFAICLSSST--EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIE 262 (435)
Q Consensus 188 --~~ql~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~ 262 (435)
..+|.+++.+ +++||+||.+.. ...|+|+|||+|+ .++.|++.|+|+.. ..+|.|.
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~pv~~--------------~~~w~v~ 193 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP-----KHFKGEHTYVPVTR--------------KGYWQFE 193 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccCh-----hhcccceEEEecCc--------------CcEEEEE
Confidence 3467777766 578999998652 3579999999986 56789999999964 3689999
Q ss_pred EeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCC
Q 037976 263 VKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTR 342 (435)
Q Consensus 263 l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 342 (435)
+++|+|+++.+..... ...+||||||++++||+++++++. ...+|+..
T Consensus 194 l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~------- 241 (317)
T cd06098 194 MGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL------- 241 (317)
T ss_pred eCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc-------
Confidence 9999999987654321 356999999999999998766542 12469864
Q ss_pred CCCCcCeEEEEEeCCceEEEEcCCCeEEEeCC--CeEEE-EEEeCC--CCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 343 AGPAVPQIDLVLQSSKAVWSIFGANSMVQVKR--DVLCL-GFVDGG--VHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 343 ~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~--~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
..+|+|+|+|+| +.++|+|++|+++..+ ...|+ ++...+ ....+.||||++|||++|+|||++++|||||+
T Consensus 242 --~~~P~i~f~f~g--~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 242 --SSMPNVSFTIGG--KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred --ccCCcEEEEECC--EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 268999999976 8999999999987643 35798 555432 11235799999999999999999999999995
No 9
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.1e-50 Score=398.29 Aligned_cols=297 Identities=22% Similarity=0.307 Sum_probs=226.0
Q ss_pred ceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCC-------------CCCCCCcccCCCCccCCCCCCCCCcccCCCCCC
Q 037976 42 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKE-------------YVSSSYTFAPCHSAPCSLANAPYCFECHGIKPR 108 (435)
Q Consensus 42 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c-------------~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~ 108 (435)
+.|+++|.||||+|++.|+|||||+++||+|.+| .+|+|++.+.|.+..|.. |
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~--------- 67 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----C--------- 67 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-----c---------
Confidence 5899999999999999999999999999998876 267888889998888842 1
Q ss_pred CCCCCCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCCc-h
Q 037976 109 PGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKIS-L 187 (435)
Q Consensus 109 ~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s-~ 187 (435)
..|.++.|.|.+.|+ +++.+.|.+++|+|+|++..... .+.++ .++.|||+............+||||||+...+ .
T Consensus 68 ~~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~-~~~~~-~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~ 144 (326)
T cd06096 68 LSCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSN-SEKES-FKKIFGCHTHETNLFLTQQATGILGLSLTKNNGL 144 (326)
T ss_pred CcCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCc-ccccc-ccEEeccCccccCcccccccceEEEccCCccccc
Confidence 124667899999994 88889999999999998752110 00111 24789999876332223568999999998643 2
Q ss_pred h---hhhhhhcCC---CCceEEecCCCCCCceeEEEcCCCcccCC-----CccCCCCeeeeeceeCCCCccccccCCCCC
Q 037976 188 P---SLFSSAFSF---KRKFAICLSSSTEANGAVFFGDGPYVMLP-----GVDVSKSLTYTPLILNPVTTATRTFTDLPS 256 (435)
Q Consensus 188 ~---~ql~~~~~i---~~~FS~~L~~~~~~~G~l~fGg~d~~~~p-----~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~ 256 (435)
. .++.++..+ .++||+||.+. +|+|+|||+|+.++. .....+++.|+|+.. +
T Consensus 145 ~~~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~--------------~ 207 (326)
T cd06096 145 PTPIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR--------------K 207 (326)
T ss_pred CchhHHHHHhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC--------------C
Confidence 1 123333332 27899999974 799999999864321 011127899999875 3
Q ss_pred CceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccC
Q 037976 257 SDYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNST 336 (435)
Q Consensus 257 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~ 336 (435)
.+|.|.|++|+|+++...... .....+||||||++++||+++|++|++++
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------- 257 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------- 257 (326)
T ss_pred ceEEEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------
Confidence 689999999999987611100 12467999999999999999999886643
Q ss_pred CCCCCCCCCCcCeEEEEEeCCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEe
Q 037976 337 HIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFS 416 (435)
Q Consensus 337 ~~~~~~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa 416 (435)
|+|+|+|++ +++++++|++|++......+|+++.... +.+|||++|||++|+|||++++|||||
T Consensus 258 -----------P~i~~~f~~-g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa 321 (326)
T cd06096 258 -----------PTITIIFEN-NLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFV 321 (326)
T ss_pred -----------CcEEEEEcC-CcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeE
Confidence 689999985 4899999999999765555565654332 468999999999999999999999999
Q ss_pred ec
Q 037976 417 SS 418 (435)
Q Consensus 417 ~~ 418 (435)
++
T Consensus 322 ~~ 323 (326)
T cd06096 322 ES 323 (326)
T ss_pred cC
Confidence 64
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.1e-50 Score=397.33 Aligned_cols=309 Identities=21% Similarity=0.244 Sum_probs=237.0
Q ss_pred EeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCC
Q 037976 33 LPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCH 112 (435)
Q Consensus 33 ~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~ 112 (435)
+||.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+| .+..|...+.+.|. .+.++.
T Consensus 1 ~~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C-----------~~~~C~~~~~y~~~------~Sst~~ 62 (320)
T cd05488 1 VPLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC-----------GSIACFLHSKYDSS------ASSTYK 62 (320)
T ss_pred Ccccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC-----------CCcccCCcceECCC------CCccee
Confidence 46665 4578999999999999999999999999999999765 34456544444443 233345
Q ss_pred CCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCCCchhh--
Q 037976 113 NNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTKISLPS-- 189 (435)
Q Consensus 113 ~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~s~~~-- 189 (435)
.+.|.+.+.|+ ++ +++|.+++|++++++. .++++.|||++...+.. .....+||||||+...+...
T Consensus 63 ~~~~~~~~~y~-~g-~~~G~~~~D~v~ig~~---------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~ 131 (320)
T cd05488 63 ANGTEFKIQYG-SG-SLEGFVSQDTLSIGDL---------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIV 131 (320)
T ss_pred eCCCEEEEEEC-Cc-eEEEEEEEeEEEECCE---------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCC
Confidence 67799999994 55 5899999999999774 78899999998763221 12457999999998766443
Q ss_pred ----hhhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEe
Q 037976 190 ----LFSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVK 264 (435)
Q Consensus 190 ----ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~ 264 (435)
+|.+++.| +++||+||.+....+|.|+|||+|+ .++.+++.|+|++. ..+|.|+++
T Consensus 132 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~--------------~~~w~v~l~ 192 (320)
T cd05488 132 PPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDE-----SRFTGKITWLPVRR--------------KAYWEVELE 192 (320)
T ss_pred CHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCH-----HHcCCceEEEeCCc--------------CcEEEEEeC
Confidence 56667766 5789999998655689999999986 46778999999974 358999999
Q ss_pred EEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCC
Q 037976 265 SIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAG 344 (435)
Q Consensus 265 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 344 (435)
+|+||++.+... ...++|||||++++||++++++|.+.+..... .......+|...
T Consensus 193 ~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~--------- 248 (320)
T cd05488 193 KIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSKV--------- 248 (320)
T ss_pred eEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeecccc---------
Confidence 999999876532 24699999999999999999998877643211 111112357643
Q ss_pred CCcCeEEEEEeCCceEEEEcCCCeEEEeCCCeEEEEEEeCCC---CCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 345 PAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGFVDGGV---HPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 345 ~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~---~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
..+|.|+|+|++ ++++|||++|+++. +..|+..+...+ ...+.||||+.|||++|+|||.+++|||||+
T Consensus 249 ~~~P~i~f~f~g--~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 249 DSLPDLTFNFDG--YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ccCCCEEEEECC--EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 368999999986 89999999999853 347985543211 1134799999999999999999999999995
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.8e-50 Score=397.17 Aligned_cols=301 Identities=18% Similarity=0.219 Sum_probs=232.3
Q ss_pred EEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeecC
Q 037976 44 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPENT 123 (435)
Q Consensus 44 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y~ 123 (435)
|+++|.||||+|+++|+|||||+++||+|..| .+..|.....+.+. .++++....|.|.+.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C-----------~~~~C~~~~~y~~~------~SsT~~~~~~~~~i~Yg 63 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC-----------TSQACTKHNRFQPS------ESSTYVSNGEAFSIQYG 63 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC-----------CCcccCccceECCC------CCcccccCCcEEEEEeC
Confidence 89999999999999999999999999998765 33456555444433 23345567799999994
Q ss_pred CCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccc-cCCcceeeecCCCCCc------hhhhhhhhcC
Q 037976 124 INGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDL-AKGVTGMAGLGRTKIS------LPSLFSSAFS 196 (435)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~ql~~~~~ 196 (435)
++ .+.|.+++|+|++++. +++++.|||+.......+ ....+||||||++.++ +..+|.+++.
T Consensus 64 -~g-~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~ 132 (316)
T cd05486 64 -TG-SLTGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNL 132 (316)
T ss_pred -Cc-EEEEEeeecEEEECCE---------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCC
Confidence 55 6899999999999874 788999999876532211 2468999999987655 3567777777
Q ss_pred C-CCceEEecCCCC--CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEe
Q 037976 197 F-KRKFAICLSSST--EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVI 273 (435)
Q Consensus 197 i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~ 273 (435)
+ .++||+||.++. ...|+|+|||+|+ .++.+++.|+|+.. +.+|.|++++|+|+++.+
T Consensus 133 i~~~~FS~~L~~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pi~~--------------~~~w~v~l~~i~v~g~~~ 193 (316)
T cd05486 133 VELPMFSVYMSRNPNSADGGELVFGGFDT-----SRFSGQLNWVPVTV--------------QGYWQIQLDNIQVGGTVI 193 (316)
T ss_pred CCCCEEEEEEccCCCCCCCcEEEEcccCH-----HHcccceEEEECCC--------------ceEEEEEeeEEEEecceE
Confidence 7 478999998753 3479999999986 56789999999864 468999999999999876
Q ss_pred ecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEE
Q 037976 274 PMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLV 353 (435)
Q Consensus 274 ~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~ 353 (435)
.... ...+||||||++++||++++++|.+.+... ... .....+|... ..+|+|+|+
T Consensus 194 ~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~-----~~~-~~~~~~C~~~---------~~~p~i~f~ 249 (316)
T cd05486 194 FCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGAT-----ATD-GEYGVDCSTL---------SLMPSVTFT 249 (316)
T ss_pred ecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCc-----ccC-CcEEEecccc---------ccCCCEEEE
Confidence 4321 257999999999999999999887766321 111 1122467643 368999999
Q ss_pred EeCCceEEEEcCCCeEEEeC--CCeEEE-EEEeCC--CCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 354 LQSSKAVWSIFGANSMVQVK--RDVLCL-GFVDGG--VHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 354 f~g~~~~~~l~~~~y~~~~~--~~~~C~-~~~~~~--~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
|+| +.++|+|++|++... .+..|+ ++.... ....+.||||+.|||++|+|||.+++|||||+
T Consensus 250 f~g--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 250 ING--IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ECC--EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 976 999999999998752 346898 565432 11235799999999999999999999999995
No 12
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.1e-50 Score=384.41 Aligned_cols=261 Identities=29% Similarity=0.541 Sum_probs=218.7
Q ss_pred eEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeec
Q 037976 43 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPEN 122 (435)
Q Consensus 43 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y 122 (435)
+|+++|+||||+|++.|+|||||+++||+| |.|.+.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------~~~~~~Y 37 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------CSYEYSY 37 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-------------------------------------------CceEeEe
Confidence 599999999999999999999999999984 2577889
Q ss_pred CCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCCchhhhhhhhcCCCCceE
Q 037976 123 TINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKISLPSLFSSAFSFKRKFA 202 (435)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS 202 (435)
+ +++.++|.+++|+|+|++.+ ++++++.|||++.... ......+||||||+...|++.||..++ ++||
T Consensus 38 ~-dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 38 G-DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred C-CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 4 89999999999999998751 2578899999998743 234578999999999999999998765 7999
Q ss_pred EecCCC--CCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEeecCCccc
Q 037976 203 ICLSSS--TEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVIPMNTSLL 280 (435)
Q Consensus 203 ~~L~~~--~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~ 280 (435)
+||.+. ...+|+|+||++|. . +.+++.|+|++.++. .+.+|.|+|++|+|+++.+.+++...
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~-----~-~~~~l~~~p~~~~~~----------~~~~~~v~l~~i~v~~~~~~~~~~~~ 169 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAAD-----L-GGSGVVYTPLVKNPA----------NPTYYYVNLEGISVGGKRLPIPPSVF 169 (265)
T ss_pred EEccCCCCCCCCCeEEECCccc-----c-cCCCceEeecccCCC----------CCCceEeeeEEEEECCEEecCCchhc
Confidence 999975 35689999999985 2 678999999987531 25789999999999999887654433
Q ss_pred cccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEEEeCCceE
Q 037976 281 SIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSSKAV 360 (435)
Q Consensus 281 ~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~ 360 (435)
.........+||||||++++||+++| |+|+|+|++ +++
T Consensus 170 ~~~~~~~~~ai~DTGTs~~~lp~~~~-----------------------------------------P~i~~~f~~-~~~ 207 (265)
T cd05476 170 AIDSDGSGGTIIDSGTTLTYLPDPAY-----------------------------------------PDLTLHFDG-GAD 207 (265)
T ss_pred ccccCCCCcEEEeCCCcceEcCcccc-----------------------------------------CCEEEEECC-CCE
Confidence 22223457899999999999997655 689999995 489
Q ss_pred EEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEeec
Q 037976 361 WSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSS 418 (435)
Q Consensus 361 ~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~ 418 (435)
|.+++++|++....+..|+++..... .+.||||++|||++|+|||.+++|||||++
T Consensus 208 ~~i~~~~y~~~~~~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~ 263 (265)
T cd05476 208 LELPPENYFVDVGEGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFAPA 263 (265)
T ss_pred EEeCcccEEEECCCCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence 99999999997666789999887632 357999999999999999999999999953
No 13
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=9.7e-50 Score=392.43 Aligned_cols=304 Identities=16% Similarity=0.226 Sum_probs=237.4
Q ss_pred CceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeee
Q 037976 41 TLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLP 120 (435)
Q Consensus 41 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~ 120 (435)
|.+|+++|.||||||++.|+|||||+++||+|..| ....|...+.+.+. .++++....|.|.+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C-----------~~~~C~~~~~f~~~------~SsT~~~~~~~~~~ 63 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC-----------QSQACTNHTKFNPS------QSSTYSTNGETFSL 63 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC-----------CCccccccCCCCcc------cCCCceECCcEEEE
Confidence 46899999999999999999999999999998765 33456655555443 23345567799999
Q ss_pred ecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCC------Cchhhhhhh
Q 037976 121 ENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTK------ISLPSLFSS 193 (435)
Q Consensus 121 ~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~------~s~~~ql~~ 193 (435)
.|+ ++ ++.|.+++|+|++++. +++++.|||++...... .....+||||||++. .+++.||.+
T Consensus 64 ~Yg-~G-s~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 64 QYG-SG-SLTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred EEC-Cc-EEEEEEEeeEEEECCE---------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 994 65 5799999999999864 78899999998763221 124579999999854 457788988
Q ss_pred hcCC-CCceEEecCCCC-CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCE
Q 037976 194 AFSF-KRKFAICLSSST-EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGH 271 (435)
Q Consensus 194 ~~~i-~~~FS~~L~~~~-~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~ 271 (435)
++.| +++||+||.+.. ..+|.|+|||+|. .++.+++.|+|+.. ..+|.|+|++|+|+++
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pv~~--------------~~~w~v~l~~i~v~g~ 193 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDN-----NLYTGQIYWTPVTS--------------ETYWQIGIQGFQINGQ 193 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCH-----HHcCCceEEEecCC--------------ceEEEEEeeEEEECCE
Confidence 8877 588999998752 3579999999986 56788999999864 4689999999999998
Q ss_pred EeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEE
Q 037976 272 VIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQID 351 (435)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~ 351 (435)
.+.... ....+||||||++++||+++|++|.+.+..... .......+|+.. ..+|.|+
T Consensus 194 ~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~---------~~~p~l~ 251 (318)
T cd05477 194 ATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD-----QYGQYVVNCNNI---------QNLPTLT 251 (318)
T ss_pred EecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCccc-----cCCCEEEeCCcc---------ccCCcEE
Confidence 765321 134689999999999999999999887754321 111122467753 3689999
Q ss_pred EEEeCCceEEEEcCCCeEEEeCCCeEEE-EEEeCC---CCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 352 LVLQSSKAVWSIFGANSMVQVKRDVLCL-GFVDGG---VHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 352 f~f~g~~~~~~l~~~~y~~~~~~~~~C~-~~~~~~---~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
|+|++ ++++|++++|+... +..|+ ++.... ....+.||||+.|||++|+|||++++|||||+
T Consensus 252 ~~f~g--~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 252 FTING--VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred EEECC--EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 99987 99999999999864 45786 675431 11234799999999999999999999999996
No 14
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.2e-49 Score=383.28 Aligned_cols=266 Identities=26% Similarity=0.434 Sum_probs=214.7
Q ss_pred ceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeee
Q 037976 42 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPE 121 (435)
Q Consensus 42 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~ 121 (435)
++|+++|.||||||++.|+|||||+++||+|.. +| ..| .|.|.+.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~----------~c--~~c-----------------------~c~~~i~ 45 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA----------PC--TGC-----------------------QCDYEIE 45 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC----------CC--CCC-----------------------cCccEeE
Confidence 479999999999999999999999999999842 12 111 3689999
Q ss_pred cCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc--ccCCcceeeecCCCCCchhhhhhhhcCCCC
Q 037976 122 NTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD--LAKGVTGMAGLGRTKISLPSLFSSAFSFKR 199 (435)
Q Consensus 122 Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~ 199 (435)
|+ +++.++|.+++|+|+|+..++. ..++++.|||+....... .....+||||||+.+++++.||.+++.+++
T Consensus 46 Yg-d~~~~~G~~~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~ 119 (273)
T cd05475 46 YA-DGGSSMGVLVTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKN 119 (273)
T ss_pred eC-CCCceEEEEEEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCc
Confidence 94 7899999999999999764321 257789999997653211 224689999999999999999998887788
Q ss_pred ceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEeecCCcc
Q 037976 200 KFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVIPMNTSL 279 (435)
Q Consensus 200 ~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 279 (435)
+||+||++. ..|.|+||+.. ++.+++.|+|+..++ ...+|.|++.+|+|+++....
T Consensus 120 ~Fs~~l~~~--~~g~l~~G~~~-------~~~g~i~ytpl~~~~-----------~~~~y~v~l~~i~vg~~~~~~---- 175 (273)
T cd05475 120 VIGHCLSSN--GGGFLFFGDDL-------VPSSGVTWTPMRRES-----------QKKHYSPGPASLLFNGQPTGG---- 175 (273)
T ss_pred eEEEEccCC--CCeEEEECCCC-------CCCCCeeecccccCC-----------CCCeEEEeEeEEEECCEECcC----
Confidence 899999873 47999999542 345789999998753 146899999999999984321
Q ss_pred ccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEEEeCC--
Q 037976 280 LSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVLQSS-- 357 (435)
Q Consensus 280 ~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~-- 357 (435)
+...+||||||++++||+++| +|+|+|+|++.
T Consensus 176 ------~~~~~ivDTGTt~t~lp~~~y----------------------------------------~p~i~~~f~~~~~ 209 (273)
T cd05475 176 ------KGLEVVFDSGSSYTYFNAQAY----------------------------------------FKPLTLKFGKGWR 209 (273)
T ss_pred ------CCceEEEECCCceEEcCCccc----------------------------------------cccEEEEECCCCc
Confidence 135799999999999997654 47899999861
Q ss_pred ceEEEEcCCCeEEEeCCCeEEEEEEeCCCC-CCCeeeechhhhcccEEEEECCCCEEEEeec
Q 037976 358 KAVWSIFGANSMVQVKRDVLCLGFVDGGVH-PRTSIVIGGHQLEDNLLQFDLGTARLGFSSS 418 (435)
Q Consensus 358 ~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~-~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~ 418 (435)
+++++|+|++|++....+..|++++...+. ..+.||||+.|||++|+|||++++|||||+.
T Consensus 210 ~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~ 271 (273)
T cd05475 210 TRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRS 271 (273)
T ss_pred eeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccC
Confidence 279999999999976667789988765431 2357999999999999999999999999963
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.9e-49 Score=390.60 Aligned_cols=312 Identities=21% Similarity=0.275 Sum_probs=238.5
Q ss_pred eeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCC
Q 037976 34 PVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHN 113 (435)
Q Consensus 34 p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~ 113 (435)
||++ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. | +..|.....+.|. .+.+|..
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~------~Sst~~~ 66 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW--------T-NIACLLHNKYDST------KSSTYKK 66 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC--------C-CccccCCCeECCc------CCCCeEE
Confidence 4554 568999999999999999999999999999999987721 1 1245443334332 2334556
Q ss_pred CCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCc-cccCCcceeeecCCCCCch-----
Q 037976 114 NTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLT-DLAKGVTGMAGLGRTKISL----- 187 (435)
Q Consensus 114 ~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s~----- 187 (435)
..|.|.+.|+ +++ +.|.+++|++++++. +++++.|||+....+. ......+||||||+..++.
T Consensus 67 ~~~~~~i~Y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p 135 (329)
T cd05485 67 NGTEFAIQYG-SGS-LSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVP 135 (329)
T ss_pred CCeEEEEEEC-Cce-EEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCC
Confidence 7799999994 654 899999999999874 7889999999765321 1124579999999987653
Q ss_pred -hhhhhhhcCC-CCceEEecCCCC--CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEE
Q 037976 188 -PSLFSSAFSF-KRKFAICLSSST--EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEV 263 (435)
Q Consensus 188 -~~ql~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l 263 (435)
..||.+++.| +++||+||.+.. ...|+|+|||+|+ .++.+++.|+|+.. +.+|.|++
T Consensus 136 ~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~--------------~~~~~v~~ 196 (329)
T cd05485 136 VFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP-----KHYTGNFTYLPVTR--------------KGYWQFKM 196 (329)
T ss_pred HHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH-----HHcccceEEEEcCC--------------ceEEEEEe
Confidence 4577777777 578999998753 2479999999986 56778999999964 46899999
Q ss_pred eEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCC
Q 037976 264 KSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRA 343 (435)
Q Consensus 264 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 343 (435)
++++|+++.+.. ....+||||||++++||++++++|.+++.... + .......+|+..
T Consensus 197 ~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~--~---~~~~~~~~C~~~-------- 253 (329)
T cd05485 197 DSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP--I---IGGEYMVNCSAI-------- 253 (329)
T ss_pred eEEEECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc--c---cCCcEEEecccc--------
Confidence 999999876531 13469999999999999999999888775321 1 111123467653
Q ss_pred CCCcCeEEEEEeCCceEEEEcCCCeEEEeCC--CeEEE-EEEeCC--CCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 344 GPAVPQIDLVLQSSKAVWSIFGANSMVQVKR--DVLCL-GFVDGG--VHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 344 ~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~--~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
..+|+|+|+|++ ++++|+|++|+++... ...|+ ++.... ....+.||||+.|||++|+|||++++|||||.
T Consensus 254 -~~~p~i~f~fgg--~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 254 -PSLPDITFVLGG--KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred -ccCCcEEEEECC--EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 358999999976 8999999999998653 45798 566432 11235799999999999999999999999984
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.9e-49 Score=400.05 Aligned_cols=314 Identities=15% Similarity=0.210 Sum_probs=239.8
Q ss_pred CCCceEEEeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCC
Q 037976 26 FRPKALVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGI 105 (435)
Q Consensus 26 ~~~~~~~~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~ 105 (435)
-...+..+||.+ ..+.+|+++|+||||||++.|+|||||+++||+|.+| .+..|.....+.+..
T Consensus 123 ~~~~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C-----------~~~~C~~~~~yd~s~---- 186 (453)
T PTZ00147 123 LGSEFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC-----------TTEGCETKNLYDSSK---- 186 (453)
T ss_pred ccCCCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC-----------CcccccCCCccCCcc----
Confidence 345667888875 5578999999999999999999999999999999765 334566555555432
Q ss_pred CCCCCCCCCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCc---cccCCcceeeecCC
Q 037976 106 KPRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLT---DLAKGVTGMAGLGR 182 (435)
Q Consensus 106 ~~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~---~~~~~~~GIlGLg~ 182 (435)
+++|....|.|.+.|+ +| .+.|.+++|+|++++. +++ ..|+|+....+. ......|||||||+
T Consensus 187 --SsT~~~~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~ 252 (453)
T PTZ00147 187 --SKTYEKDGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGW 252 (453)
T ss_pred --CcceEECCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccccccccceecccC
Confidence 3445566789999994 55 6899999999999874 666 578887754211 11236899999999
Q ss_pred CCCc------hhhhhhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCC
Q 037976 183 TKIS------LPSLFSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLP 255 (435)
Q Consensus 183 ~~~s------~~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~ 255 (435)
+.++ ++.+|..++.| +++||+||.+.....|.|+|||+|+ .++.|++.|+|+..
T Consensus 253 ~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~-----~ky~G~l~y~pl~~-------------- 313 (453)
T PTZ00147 253 KDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEE-----RFYEGPLTYEKLNH-------------- 313 (453)
T ss_pred CccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcCh-----hhcCCceEEEEcCC--------------
Confidence 8765 44578888777 5689999987655689999999986 56789999999953
Q ss_pred CCceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCcccccc
Q 037976 256 SSDYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNS 335 (435)
Q Consensus 256 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~ 335 (435)
..+|.|.++ +.+++... ....+||||||+++++|+++++++.+++.... .+.. .....+|+.
T Consensus 314 ~~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~--~~y~~~C~~- 375 (453)
T PTZ00147 314 DLYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL--PLYVTTCNN- 375 (453)
T ss_pred CceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC--CeEEEeCCC-
Confidence 468999998 57765421 13579999999999999999999988774321 1111 112346874
Q ss_pred CCCCCCCCCCCcCeEEEEEeCCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCCCCCCeeeechhhhcccEEEEECCCCE
Q 037976 336 THIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKR--DVLCL-GFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTAR 412 (435)
Q Consensus 336 ~~~~~~~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~r 412 (435)
..+|+|+|+|++ ..++|+|++|+.+..+ ...|+ ++...+. ..+.||||++|||++|+|||.+++|
T Consensus 376 ---------~~lP~~~f~f~g--~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~r 443 (453)
T PTZ00147 376 ---------TKLPTLEFRSPN--KVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHT 443 (453)
T ss_pred ---------CCCCeEEEEECC--EEEEECHHHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCE
Confidence 258999999987 8999999999976432 35797 5665432 2347999999999999999999999
Q ss_pred EEEeec
Q 037976 413 LGFSSS 418 (435)
Q Consensus 413 IGfa~~ 418 (435)
||||++
T Consensus 444 IGfA~a 449 (453)
T PTZ00147 444 VGFALA 449 (453)
T ss_pred EEEEEe
Confidence 999986
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=9.7e-49 Score=397.11 Aligned_cols=314 Identities=15% Similarity=0.216 Sum_probs=237.3
Q ss_pred CCceEEEeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCC
Q 037976 27 RPKALVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIK 106 (435)
Q Consensus 27 ~~~~~~~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~ 106 (435)
....-.+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..| .+..|.....+.|..
T Consensus 123 ~~~~~~~~l~d-~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C-----------~~~~C~~~~~yd~s~----- 185 (450)
T PTZ00013 123 GSENDVIELDD-VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC-----------DSIGCSIKNLYDSSK----- 185 (450)
T ss_pred ccCCCceeeec-cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC-----------CccccccCCCccCcc-----
Confidence 34556677775 5578999999999999999999999999999998765 334576656665542
Q ss_pred CCCCCCCCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcC-cc--ccCCcceeeecCCC
Q 037976 107 PRPGCHNNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLL-TD--LAKGVTGMAGLGRT 183 (435)
Q Consensus 107 ~~~~~~~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~-~~--~~~~~~GIlGLg~~ 183 (435)
++++....|.+.+.|+ +| .+.|.+++|+|++++. +++ ..|+++..... .. .....+||||||++
T Consensus 186 -SsT~~~~~~~~~i~YG-~G-sv~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~ 252 (450)
T PTZ00013 186 -SKSYEKDGTKVDITYG-SG-TVKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWK 252 (450)
T ss_pred -CcccccCCcEEEEEEC-Cc-eEEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceecccccceecccCC
Confidence 3344566789999994 55 5999999999999874 566 57888765421 11 12357999999998
Q ss_pred CCc------hhhhhhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCC
Q 037976 184 KIS------LPSLFSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPS 256 (435)
Q Consensus 184 ~~s------~~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~ 256 (435)
.++ ++.+|.+++.| +++||+||++.....|.|+|||+|+ ++|.|++.|+|+.. +
T Consensus 253 ~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~-----~~y~G~L~y~pv~~--------------~ 313 (450)
T PTZ00013 253 DLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEE-----KFYEGNITYEKLNH--------------D 313 (450)
T ss_pred ccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCc-----cccccceEEEEcCc--------------C
Confidence 654 45688888877 4689999987645689999999986 56789999999963 4
Q ss_pred CceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccC
Q 037976 257 SDYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNST 336 (435)
Q Consensus 257 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~ 336 (435)
.+|.|+++ +.++..... ...+||||||+++++|+++++++.+.+.... .+.. .....+|+.
T Consensus 314 ~yW~I~l~-v~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~~--~~y~~~C~~-- 374 (450)
T PTZ00013 314 LYWQIDLD-VHFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPFL--PFYVTTCDN-- 374 (450)
T ss_pred ceEEEEEE-EEECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCCC--CeEEeecCC--
Confidence 68999998 666644321 3569999999999999999888877664321 1111 112346764
Q ss_pred CCCCCCCCCCcCeEEEEEeCCceEEEEcCCCeEEEeC--CCeEEE-EEEeCCCCCCCeeeechhhhcccEEEEECCCCEE
Q 037976 337 HIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVK--RDVLCL-GFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARL 413 (435)
Q Consensus 337 ~~~~~~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~--~~~~C~-~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rI 413 (435)
..+|+|+|+|++ .+++|+|++|+.+.. ++..|+ ++.+.+. ..+.||||++|||++|+|||++++||
T Consensus 375 --------~~lP~i~F~~~g--~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rI 443 (450)
T PTZ00013 375 --------KEMPTLEFKSAN--NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESV 443 (450)
T ss_pred --------CCCCeEEEEECC--EEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEE
Confidence 258999999987 899999999987532 346897 5554332 23579999999999999999999999
Q ss_pred EEeecC
Q 037976 414 GFSSSL 419 (435)
Q Consensus 414 Gfa~~~ 419 (435)
|||++.
T Consensus 444 GfA~a~ 449 (450)
T PTZ00013 444 GFAIAK 449 (450)
T ss_pred EEEEeC
Confidence 999864
No 18
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.6e-48 Score=383.53 Aligned_cols=308 Identities=18% Similarity=0.238 Sum_probs=236.3
Q ss_pred CCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCcee
Q 037976 39 GSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNL 118 (435)
Q Consensus 39 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~ 118 (435)
..+.+|+++|+||||+|+++|+|||||+++||+|.+|.. | ...|...+.+.|.. +++|....|.|
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~~------SsT~~~~~~~~ 68 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP--------L-YTACVTHNLYDASD------SSTYKENGTEF 68 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC--------c-chhhcccCcCCCCC------CeeeeECCEEE
Confidence 457899999999999999999999999999999877621 1 12465555555432 33445677999
Q ss_pred eeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcC-ccccCCcceeeecCCCCCc------hhhhh
Q 037976 119 LPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLL-TDLAKGVTGMAGLGRTKIS------LPSLF 191 (435)
Q Consensus 119 ~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~-~~~~~~~~GIlGLg~~~~s------~~~ql 191 (435)
.+.|+ ++ .+.|.+++|+|++++. .+ ++.|||+..... .......+||||||++..+ +..+|
T Consensus 69 ~~~Yg-~g-~~~G~~~~D~v~~g~~---------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 136 (326)
T cd05487 69 TIHYA-SG-TVKGFLSQDIVTVGGI---------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNI 136 (326)
T ss_pred EEEeC-Cc-eEEEEEeeeEEEECCE---------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHH
Confidence 99994 65 5999999999999874 45 378999887521 1122468999999987654 34567
Q ss_pred hhhcCC-CCceEEecCCCC--CCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEE
Q 037976 192 SSAFSF-KRKFAICLSSST--EANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKI 268 (435)
Q Consensus 192 ~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v 268 (435)
.+++.| .++||+||.+.. ...|+|+|||+|. .+|.+++.|+|+.. +.+|.|++++|+|
T Consensus 137 ~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~y~g~l~~~~~~~--------------~~~w~v~l~~i~v 197 (326)
T cd05487 137 MSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDP-----QHYQGDFHYINTSK--------------TGFWQIQMKGVSV 197 (326)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcCh-----hhccCceEEEECCc--------------CceEEEEecEEEE
Confidence 777777 578999998753 3579999999986 56789999999864 4689999999999
Q ss_pred cCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcC
Q 037976 269 NGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVP 348 (435)
Q Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 348 (435)
+++.+.... ...+||||||++++||+++++++++++.... . ......+|+.. ..+|
T Consensus 198 g~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~-----~-~~~y~~~C~~~---------~~~P 253 (326)
T cd05487 198 GSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKE-----R-LGDYVVKCNEV---------PTLP 253 (326)
T ss_pred CCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCcc-----c-CCCEEEecccc---------CCCC
Confidence 998764321 2469999999999999999999988774321 1 11223478753 3689
Q ss_pred eEEEEEeCCceEEEEcCCCeEEEeCC--CeEEE-EEEeCCC--CCCCeeeechhhhcccEEEEECCCCEEEEeec
Q 037976 349 QIDLVLQSSKAVWSIFGANSMVQVKR--DVLCL-GFVDGGV--HPRTSIVIGGHQLEDNLLQFDLGTARLGFSSS 418 (435)
Q Consensus 349 ~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~ 418 (435)
.|+|+|++ .+++|++++|+++..+ +..|+ ++...+. ...+.||||+.|||++|+|||++++|||||++
T Consensus 254 ~i~f~fgg--~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 254 DISFHLGG--KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CEEEEECC--EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999976 8999999999997643 46787 5654321 12357999999999999999999999999963
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.5e-47 Score=383.50 Aligned_cols=321 Identities=16% Similarity=0.198 Sum_probs=230.0
Q ss_pred ceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeee
Q 037976 42 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPE 121 (435)
Q Consensus 42 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~ 121 (435)
..|+++|.||||+|++.|+|||||+++||+|.+|. .| ...+.+. .+.++....|.|.+.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-------------~~--~~~f~~~------~SsT~~~~~~~~~i~ 60 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-------------FI--HTYFHRE------LSSTYRDLGKGVTVP 60 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-------------cc--cccCCch------hCcCcccCCceEEEE
Confidence 37999999999999999999999999999997651 01 1122222 233345677999999
Q ss_pred cCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccc-cCCcceeeecCCCCCc--------hhhhhh
Q 037976 122 NTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDL-AKGVTGMAGLGRTKIS--------LPSLFS 192 (435)
Q Consensus 122 Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~-~~~~~GIlGLg~~~~s--------~~~ql~ 192 (435)
|+ +| .+.|.+++|+|+|++.. .+.+. +.|++......... ....+||||||+..++ +..+|.
T Consensus 61 Yg-~G-s~~G~~~~D~v~ig~~~------~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~ 131 (364)
T cd05473 61 YT-QG-SWEGELGTDLVSIPKGP------NVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLV 131 (364)
T ss_pred EC-cc-eEEEEEEEEEEEECCCC------ccceE-EeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHH
Confidence 94 55 67999999999997531 11222 34566554421111 1257999999997664 344777
Q ss_pred hhcCCCCceEEecCC---------CCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEE
Q 037976 193 SAFSFKRKFAICLSS---------STEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEV 263 (435)
Q Consensus 193 ~~~~i~~~FS~~L~~---------~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l 263 (435)
++..++++||++|.. .....|+|+|||+|+ .++.+++.|+|+.. ..+|.|.|
T Consensus 132 ~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~-----~~~~g~l~~~p~~~--------------~~~~~v~l 192 (364)
T cd05473 132 KQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP-----SLYKGDIWYTPIRE--------------EWYYEVII 192 (364)
T ss_pred hccCCccceEEEecccccccccccccCCCcEEEeCCcCH-----hhcCCCceEEecCc--------------ceeEEEEE
Confidence 777676789997742 112479999999986 46789999999975 35899999
Q ss_pred eEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCC---CCCCccccccCCCCC
Q 037976 264 KSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKP---VSPFGACFNSTHIGR 340 (435)
Q Consensus 264 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~C~~~~~~~~ 340 (435)
++|+|+++.+..+...+. ...+||||||++++||+++|++|.+++.++.. ....+. ......|+......
T Consensus 193 ~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~C~~~~~~~- 265 (364)
T cd05473 193 LKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL-IEDFPDGFWLGSQLACWQKGTTP- 265 (364)
T ss_pred EEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhcc-cccCCccccCcceeecccccCch-
Confidence 999999998775433211 24699999999999999999999999988753 111111 11124788643211
Q ss_pred CCCCCCcCeEEEEEeCC----ceEEEEcCCCeEEEeC---CCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEE
Q 037976 341 TRAGPAVPQIDLVLQSS----KAVWSIFGANSMVQVK---RDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARL 413 (435)
Q Consensus 341 ~~~~~~~P~i~f~f~g~----~~~~~l~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rI 413 (435)
...+|+|+|+|++. +++++|+|++|+.... .+..|+++..... .+.||||+.|||++|+|||++++||
T Consensus 266 ---~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rI 340 (364)
T cd05473 266 ---WEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRV 340 (364)
T ss_pred ---HhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEE
Confidence 13699999999762 3578999999998643 2467986533221 2468999999999999999999999
Q ss_pred EEeecCCcccCCCCCC
Q 037976 414 GFSSSLLFRQTTCSNF 429 (435)
Q Consensus 414 Gfa~~~~~~~~~c~~~ 429 (435)
|||+. +|...
T Consensus 341 Gfa~~------~C~~~ 350 (364)
T cd05473 341 GFAVS------TCAEH 350 (364)
T ss_pred eeEec------ccccc
Confidence 99975 66553
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.9e-47 Score=367.77 Aligned_cols=278 Identities=19% Similarity=0.249 Sum_probs=226.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeee
Q 037976 42 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPE 121 (435)
Q Consensus 42 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~ 121 (435)
..|+++|.||||+|++.|+|||||+++||+ .|.+.
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------------------~~~~~ 35 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------------------DFSIS 35 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------eeEEE
Confidence 369999999999999999999999999997 25678
Q ss_pred cCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCC-----------chhhh
Q 037976 122 NTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKI-----------SLPSL 190 (435)
Q Consensus 122 Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~q 190 (435)
| .+++.+.|.+++|+|++++. +++++.|||++.. ...+||||||+... +++.|
T Consensus 36 Y-~~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~ 99 (295)
T cd05474 36 Y-GDGTSASGTWGTDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIA 99 (295)
T ss_pred e-ccCCcEEEEEEEEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHH
Confidence 8 48889999999999999874 6889999999985 24799999999876 68889
Q ss_pred hhhhcCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEc
Q 037976 191 FSSAFSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKIN 269 (435)
Q Consensus 191 l~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~ 269 (435)
|.+++.| ++.||+||.+....+|.|+|||+|. .++.+++.|+|+...... ....+|.|.+++|+|+
T Consensus 100 L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~-----~~~~g~~~~~p~~~~~~~--------~~~~~~~v~l~~i~v~ 166 (295)
T cd05474 100 LKKQGLIKKNAYSLYLNDLDASTGSILFGGVDT-----AKYSGDLVTLPIVNDNGG--------SEPSELSVTLSSISVN 166 (295)
T ss_pred HHHCCcccceEEEEEeCCCCCCceeEEEeeecc-----ceeeceeEEEeCcCcCCC--------CCceEEEEEEEEEEEE
Confidence 9888877 4789999998655689999999986 457789999999875310 1247999999999999
Q ss_pred CEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCe
Q 037976 270 GHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQ 349 (435)
Q Consensus 270 ~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 349 (435)
++.+..+.. .+...++|||||++++||+++|++|.+++.+... .. .......|+... . |.
T Consensus 167 ~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~--~~--~~~~~~~C~~~~---------~-p~ 226 (295)
T cd05474 167 GSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD--SD--EGLYVVDCDAKD---------D-GS 226 (295)
T ss_pred cCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc--CC--CcEEEEeCCCCC---------C-CE
Confidence 987653211 2246899999999999999999999998866432 11 122345787542 3 99
Q ss_pred EEEEEeCCceEEEEcCCCeEEEeC----CCeEEE-EEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEeec
Q 037976 350 IDLVLQSSKAVWSIFGANSMVQVK----RDVLCL-GFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSSS 418 (435)
Q Consensus 350 i~f~f~g~~~~~~l~~~~y~~~~~----~~~~C~-~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~~ 418 (435)
|+|+|+| ++++||+++|+++.. .+..|+ ++..... +.||||++|||++|++||.+++|||||++
T Consensus 227 i~f~f~g--~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 227 LTFNFGG--ATISVPLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEECC--eEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999987 999999999999764 256785 7766542 47999999999999999999999999973
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.1e-44 Score=349.93 Aligned_cols=267 Identities=20% Similarity=0.190 Sum_probs=201.1
Q ss_pred EEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCC-CCCceeeeec
Q 037976 44 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCH-NNTCNLLPEN 122 (435)
Q Consensus 44 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~-~~~c~~~~~Y 122 (435)
|+++|+||||+|++.|+|||||+++||+|.+|. .| .|.....+.|.. ++++. ...|.|.+.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--------~~---~~~~~~~y~~~~------Sst~~~~~~~~~~i~Y 63 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--------AA---QQGGHKLYDPSK------SSTAKLLPGATWSISY 63 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--------ch---hhccCCcCCCcc------CccceecCCcEEEEEe
Confidence 899999999999999999999999999998762 12 222222233321 22233 3468999999
Q ss_pred CCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCCCch---------hhhhh
Q 037976 123 TINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTKISL---------PSLFS 192 (435)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~s~---------~~ql~ 192 (435)
+ +++.+.|.+++|+|+|++. +++++.|||++...... .....+||||||+...+. ..+|.
T Consensus 64 ~-~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~ 133 (278)
T cd06097 64 G-DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENAL 133 (278)
T ss_pred C-CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHH
Confidence 4 8888999999999999874 78899999998863211 224689999999976543 33455
Q ss_pred hhcCCCCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEE
Q 037976 193 SAFSFKRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHV 272 (435)
Q Consensus 193 ~~~~i~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 272 (435)
++.. ++.||+||.+. .+|+|+|||+|+ .++.+++.|+|+..+ ..+|.|++++|+|+++.
T Consensus 134 ~~~~-~~~Fs~~l~~~--~~G~l~fGg~D~-----~~~~g~l~~~pi~~~-------------~~~w~v~l~~i~v~~~~ 192 (278)
T cd06097 134 SSLD-APLFTADLRKA--APGFYTFGYIDE-----SKYKGEISWTPVDNS-------------SGFWQFTSTSYTVGGDA 192 (278)
T ss_pred Hhcc-CceEEEEecCC--CCcEEEEeccCh-----HHcCCceEEEEccCC-------------CcEEEEEEeeEEECCcc
Confidence 5433 58899999873 579999999986 567899999999763 46899999999999874
Q ss_pred eecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEE
Q 037976 273 IPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDL 352 (435)
Q Consensus 273 ~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f 352 (435)
.... ....+||||||+++++|+++++++.+++.... +.. .......+|.. .+|+|+|
T Consensus 193 ~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~~-~~~~~~~~C~~-----------~~P~i~f 249 (278)
T cd06097 193 PWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YDS-EYGGWVFPCDT-----------TLPDLSF 249 (278)
T ss_pred eeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc--ccC-CCCEEEEECCC-----------CCCCEEE
Confidence 3211 13579999999999999999988887763211 111 11111234552 3789888
Q ss_pred EEeCCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 353 VLQSSKAVWSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 353 ~f~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
+| .||||++|||++|+|||++++|||||+
T Consensus 250 ~~------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 250 AV------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EE------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 87 489999999999999999999999994
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.2e-42 Score=335.59 Aligned_cols=274 Identities=22% Similarity=0.345 Sum_probs=212.0
Q ss_pred EEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeecC
Q 037976 44 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPENT 123 (435)
Q Consensus 44 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y~ 123 (435)
|+++|.||+|+|++.|+|||||+++||+|..|.. |....+.. ..+ ....+..|.+..|.+.+.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~--------~~~~~~~~---~~~----~~~~s~~~~~~~~~~~~~Y~ 65 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS--------CSCQKHPR---FKY----DSSKSSTYKDTGCTFSITYG 65 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc--------cccccCCC---Ccc----CccCCceeecCCCEEEEEEC
Confidence 7899999999999999999999999999988621 11111110 000 11122334577899999993
Q ss_pred CCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCC------CchhhhhhhhcCC
Q 037976 124 INGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTK------ISLPSLFSSAFSF 197 (435)
Q Consensus 124 ~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i 197 (435)
+ +.+.|.+++|+|+|++. +++++.|||++...........+||||||+.. .+++.||.+++.|
T Consensus 66 -~-g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 66 -D-GSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred -C-CeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 5 68999999999999875 57899999999874322245789999999988 7899999998876
Q ss_pred -CCceEEecCCC--CCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEee
Q 037976 198 -KRKFAICLSSS--TEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVIP 274 (435)
Q Consensus 198 -~~~FS~~L~~~--~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~ 274 (435)
+++||+||.+. ....|.|+|||+|. .++.+++.|+|++... +.+|.|.|++|.|++....
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~-----~~~~~~~~~~p~~~~~------------~~~~~v~l~~i~v~~~~~~ 197 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDP-----SKYTGDLTYTPVVSNG------------PGYWQVPLDGISVGGKSVI 197 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCc-----cccCCceEEEecCCCC------------CCEEEEEeCeEEECCceee
Confidence 68899999985 35689999999986 3467899999998752 5799999999999987511
Q ss_pred cCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEEE
Q 037976 275 MNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLVL 354 (435)
Q Consensus 275 ~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 354 (435)
.. .....++|||||++++||+++|++|.+++...... ...|+...+.. ...+|.|+|+|
T Consensus 198 ~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~p~i~f~f 256 (283)
T cd05471 198 SS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSP----CDTLPDITFTF 256 (283)
T ss_pred ec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcc----cCcCCCEEEEE
Confidence 11 22467999999999999999999999988765531 11232222211 14789999988
Q ss_pred eCCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 355 QSSKAVWSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 355 ~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999984
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.2e-43 Score=348.26 Aligned_cols=303 Identities=19% Similarity=0.299 Sum_probs=232.9
Q ss_pred eEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeec
Q 037976 43 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPEN 122 (435)
Q Consensus 43 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y 122 (435)
+|+++|.||||+|++.|++||||+++||++..|... ..|.....+.|.. +.+|....+.+.+.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----------~~~~~~~~y~~~~------S~t~~~~~~~~~~~y 64 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----------SSCASSGFYNPSK------SSTFSNQGKPFSISY 64 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----------THHCTSC-BBGGG------STTEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----------ccccccccccccc------ccccccceeeeeeec
Confidence 699999999999999999999999999998765221 1344333444432 222344567899999
Q ss_pred CCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeecCCCC-------Cchhhhhhhh
Q 037976 123 TINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGLGRTK-------ISLPSLFSSA 194 (435)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~-------~s~~~ql~~~ 194 (435)
+ ++. ++|.+++|+|+|++. .+.++.||++....... .....+||||||+.. .++..+|.++
T Consensus 65 ~-~g~-~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~ 133 (317)
T PF00026_consen 65 G-DGS-VSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQ 133 (317)
T ss_dssp T-TEE-EEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHT
T ss_pred c-Ccc-cccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhh
Confidence 3 655 999999999999874 77789999998852211 235789999999743 4577789988
Q ss_pred cCC-CCceEEecCCCCCCceeEEEcCCCcccCCCccCCCCeeeeeceeCCCCccccccCCCCCCceEEEEeEEEEcCEEe
Q 037976 195 FSF-KRKFAICLSSSTEANGAVFFGDGPYVMLPGVDVSKSLTYTPLILNPVTTATRTFTDLPSSDYFIEVKSIKINGHVI 273 (435)
Q Consensus 195 ~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~p~~~~~g~~~~tPl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~ 273 (435)
+.| +++||++|.+.....|.|+|||+|+ .++.+++.|+|+.. ..+|.|.+++|.+++...
T Consensus 134 g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~-----~~~~g~~~~~~~~~--------------~~~w~v~~~~i~i~~~~~ 194 (317)
T PF00026_consen 134 GLISSNVFSLYLNPSDSQNGSLTFGGYDP-----SKYDGDLVWVPLVS--------------SGYWSVPLDSISIGGESV 194 (317)
T ss_dssp TSSSSSEEEEEEESTTSSEEEEEESSEEG-----GGEESEEEEEEBSS--------------TTTTEEEEEEEEETTEEE
T ss_pred ccccccccceeeeecccccchheeecccc-----ccccCceeccCccc--------------cccccccccccccccccc
Confidence 888 5789999998755679999999986 56789999999983 478999999999999832
Q ss_pred ecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccCCCCCCCCCCccccccCCCCCCCCCCCcCeEEEE
Q 037976 274 PMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKVPRVKPVSPFGACFNSTHIGRTRAGPAVPQIDLV 353 (435)
Q Consensus 274 ~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~ 353 (435)
.... ...++|||||++++||.+++++|++.+...... .....+|... ..+|.|+|+
T Consensus 195 ~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~---------~~~p~l~f~ 250 (317)
T PF00026_consen 195 FSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST---------DSLPDLTFT 250 (317)
T ss_dssp EEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG---------GGSEEEEEE
T ss_pred cccc---------ceeeecccccccccccchhhHHHHhhhcccccc------eeEEEecccc---------cccceEEEe
Confidence 2111 235899999999999999999999988665431 1123467654 258999999
Q ss_pred EeCCceEEEEcCCCeEEEeCCC--eEEE-EEEeCC-CCCCCeeeechhhhcccEEEEECCCCEEEEee
Q 037976 354 LQSSKAVWSIFGANSMVQVKRD--VLCL-GFVDGG-VHPRTSIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 354 f~g~~~~~~l~~~~y~~~~~~~--~~C~-~~~~~~-~~~~~~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
|++ .+++|+|++|+.+.... ..|. ++...+ ......+|||.+|||++|+|||.+++|||||+
T Consensus 251 ~~~--~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 251 FGG--VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp ETT--EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred eCC--EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 987 89999999999987653 4787 454411 11246899999999999999999999999997
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=8.7e-30 Score=226.21 Aligned_cols=159 Identities=36% Similarity=0.609 Sum_probs=128.5
Q ss_pred EEEEEEeCCCCCeEEEEEEcCCCceeeeC----CCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceee
Q 037976 44 YLTQIKQRTPLVPVKLTLDLGGQFLWVDC----EKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLL 119 (435)
Q Consensus 44 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~----~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~ 119 (435)
|+++|+||||+|++.|++||||+++|++| -++.+|+||+.++|.++.|....+. +. ...+.+..|.|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~-------~~~~~~~~C~y~ 72 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CP-------CCCCSNNSCPYS 72 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSS-BT-------CCTCESSEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccc-cc-------cCCCCcCcccce
Confidence 89999999999999999999999999999 4458999999999999999877653 11 112246789999
Q ss_pred eecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCCCCCchhhhhhhhcCCCC
Q 037976 120 PENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGRTKISLPSLFSSAFSFKR 199 (435)
Q Consensus 120 ~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~ 199 (435)
+.| .+++.+.|.+++|+|+++..++. ...+.+++|||++.. .+.....+||||||+.++||++||.++ ..+
T Consensus 73 ~~y-~~~s~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~--~g~~~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 73 QSY-GDGSSSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSN--SGLFYGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEE-TTTEEEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GG--GTSSTTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred eec-CCCccccCceEEEEEEecCCCCC----CceeeeEEEEeeecc--ccCCcCCCcccccCCCcccHHHHHHHh--cCC
Confidence 999 58999999999999999886422 246778999999998 355568999999999999999999877 458
Q ss_pred ceEEecCC-CCCCceeEEEcC
Q 037976 200 KFAICLSS-STEANGAVFFGD 219 (435)
Q Consensus 200 ~FS~~L~~-~~~~~G~l~fGg 219 (435)
+|||||++ .....|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999999 456789999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=2.7e-27 Score=209.86 Aligned_cols=158 Identities=30% Similarity=0.559 Sum_probs=123.3
Q ss_pred ceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHHHHHHHHHhccC--CC-CCCCCCCccccc
Q 037976 258 DYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAFIEAFTKELAKV--PR-VKPVSPFGACFN 334 (435)
Q Consensus 258 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l~~~l~~~~~~~--~~-~~~~~~~~~C~~ 334 (435)
+|+|+|++|+||++++.+++..+++ ..+.+++||||||++|+||+++|++++++|.+++... .+ ......+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999988876 6677899999999999999999999999999998732 22 233466789999
Q ss_pred cCCCCCCCCCCCcCeEEEEEeCCceEEEEcCCCeEEEeCCCeEEEEEEeCCCCCCCeeeechhhhcccEEEEECCCCEEE
Q 037976 335 STHIGRTRAGPAVPQIDLVLQSSKAVWSIFGANSMVQVKRDVLCLGFVDGGVHPRTSIVIGGHQLEDNLLQFDLGTARLG 414 (435)
Q Consensus 335 ~~~~~~~~~~~~~P~i~f~f~g~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvFD~~~~rIG 414 (435)
.+....++....+|+|+|+|.+ +++++|++++|++...++..|+++.+......+..|||..+|+++.++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 8763222234689999999997 699999999999999888999999987222346889999999999999999999999
Q ss_pred Eee
Q 037976 415 FSS 417 (435)
Q Consensus 415 fa~ 417 (435)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.78 E-value=1.6e-18 Score=143.21 Aligned_cols=107 Identities=24% Similarity=0.269 Sum_probs=77.8
Q ss_pred EEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCC-CCcccCCCCCCCCCCCCCceeeeecCC
Q 037976 46 TQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAP-YCFECHGIKPRPGCHNNTCNLLPENTI 124 (435)
Q Consensus 46 ~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~-~c~~~~~~~~~~~~~~~~c~~~~~Y~~ 124 (435)
++|.||||+|++.|+|||||+++||+|.+|. .|. |.....+ .+. .+..+....|.|.+.|+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--------~~~---~~~~~~~~~~~------~sst~~~~~~~~~~~Y~- 62 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--------SLA---IYSHSSYDDPS------ASSTYSDNGCTFSITYG- 62 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--------Ccc---cccccccCCcC------CCCCCCCCCcEEEEEeC-
Confidence 4799999999999999999999999998762 111 1111111 111 12223456799999994
Q ss_pred CCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCcc-ccCCcceeeec
Q 037976 125 NGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTD-LAKGVTGMAGL 180 (435)
Q Consensus 125 ~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGL 180 (435)
++ .+.|.+++|+|+|++. .++++.|||++...... .....+|||||
T Consensus 63 ~g-~~~g~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 63 TG-SLSGGLSTDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CC-eEEEEEEEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 65 6789999999999774 68899999999874321 12468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.65 E-value=0.00017 Score=57.19 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCCCCCceeeeec
Q 037976 43 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCHNNTCNLLPEN 122 (435)
Q Consensus 43 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~~~~c~~~~~Y 122 (435)
.|++++.|+. +++.+++|||++.+|+.... . ..+.. . ........+..
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~------~-------~~l~~-~----------------~~~~~~~~~~~ 49 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEEL------A-------ERLGL-P----------------LTLGGKVTVQT 49 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHH------H-------HHcCC-C----------------ccCCCcEEEEe
Confidence 6899999995 99999999999999997321 0 01110 0 00112344444
Q ss_pred CCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCC
Q 037976 123 TINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGR 182 (435)
Q Consensus 123 ~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~ 182 (435)
.++.........+.+++++. ++.++.+....... . ..+||||+.+
T Consensus 50 -~~G~~~~~~~~~~~i~ig~~---------~~~~~~~~v~d~~~--~---~~~gIlG~d~ 94 (96)
T cd05483 50 -ANGRVRAARVRLDSLQIGGI---------TLRNVPAVVLPGDA--L---GVDGLLGMDF 94 (96)
T ss_pred -cCCCccceEEEcceEEECCc---------EEeccEEEEeCCcc--c---CCceEeChHH
Confidence 45666666666888999874 67777777666541 1 5899999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.18 E-value=0.034 Score=46.55 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=62.7
Q ss_pred EeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeCCCCCCCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCCC
Q 037976 33 LPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCEKEYVSSSYTFAPCHSAPCSLANAPYCFECHGIKPRPGCH 112 (435)
Q Consensus 33 ~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~s~~C~~~~~~~c~~~~~~~~~~~~~ 112 (435)
+|+..+ .++.|++++.|.. +++.+++|||++.+-++.+- -+.... . . .
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~------A~~Lgl-----~--~----------------~ 49 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNEED------AQRLGL-----D--L----------------N 49 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HHHcCC-----C--c----------------c
Confidence 566653 4799999999987 79999999999998875321 000000 0 0 0
Q ss_pred CCCceeeeecCCCCceEeeEEEEEEEEEecCCCCCCCceeecCceEEeeecCCcCccccCCcceeeecCC
Q 037976 113 NNTCNLLPENTINGISFFGGVSMDVASIQSTDGKNPGKVVSVPKLLFVCSDSFLLTDLAKGVTGMAGLGR 182 (435)
Q Consensus 113 ~~~c~~~~~Y~~~~~~~~G~~~~D~v~~~~~~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~ 182 (435)
...-...+. .++|......+.-|.+.+++. .+.|+.+.+.... . ..+|+||+.+
T Consensus 50 ~~~~~~~~~-ta~G~~~~~~~~l~~l~iG~~---------~~~nv~~~v~~~~---~---~~~~LLGm~f 103 (121)
T TIGR02281 50 RLGYTVTVS-TANGQIKAARVTLDRVAIGGI---------VVNDVDAMVAEGG---A---LSESLLGMSF 103 (121)
T ss_pred cCCceEEEE-eCCCcEEEEEEEeCEEEECCE---------EEeCcEEEEeCCC---c---CCceEcCHHH
Confidence 001112222 234544455567788999885 6777777666543 1 1479999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.74 E-value=0.24 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEeCCCCCeEEEEEEcCCCceeee
Q 037976 46 TQIKQRTPLVPVKLTLDLGGQFLWVD 71 (435)
Q Consensus 46 ~~i~vGtP~q~~~v~~DTGSs~~Wv~ 71 (435)
+++.|+. +++.+++|||++.+.+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVIS 24 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEEC
Confidence 3567776 89999999999987775
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.10 E-value=2.2 Score=35.67 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred eeeechhhhcccEEEEECCCCEEEE
Q 037976 391 SIVIGGHQLEDNLLQFDLGTARLGF 415 (435)
Q Consensus 391 ~~ILG~~fl~~~yvvFD~~~~rIGf 415 (435)
-.|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 3599999999999999999998853
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.07 E-value=0.74 Score=38.55 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCceEEEEEEeCCCCCeEEEEEEcCCCceeee
Q 037976 40 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVD 71 (435)
Q Consensus 40 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~ 71 (435)
....+++++.|+. +++.+++|||++.+++.
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is 42 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMS 42 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeC
Confidence 3568899999997 88999999999999986
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.55 E-value=0.84 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=24.7
Q ss_pred eeechhhhcccEEEEECCCCEEEEee
Q 037976 392 IVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 392 ~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
.|||..+|+.|..+-|+.+++|-|..
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeC
Confidence 69999999999999999999999985
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.64 E-value=0.36 Score=37.93 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=24.3
Q ss_pred EEEEEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 44 YLTQIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 44 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
|++++.|+. +++.+++||||+..++.-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578899998 899999999999999964
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.39 E-value=3.9 Score=33.24 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.2
Q ss_pred eeeechhhhcccEEEEECCCCEE
Q 037976 391 SIVIGGHQLEDNLLQFDLGTARL 413 (435)
Q Consensus 391 ~~ILG~~fl~~~yvvFD~~~~rI 413 (435)
..+||+.||+.+-++-|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999988753
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.47 E-value=1.9 Score=32.32 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCceEEEEEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 40 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 40 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
..+.+++++.||. +.+.+++|||++...++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4578999999999 999999999999988863
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.79 E-value=3.3 Score=34.53 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=26.7
Q ss_pred CCceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHH
Q 037976 256 SSDYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 256 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.++|.+ .+.|||+.. .++||||.+.+.++++..+++
T Consensus 9 ~g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 456654 567888753 378999999999998766554
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.32 E-value=2.1 Score=32.88 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.6
Q ss_pred CeEEcccccceeeCHHHHHHH
Q 037976 289 GTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 289 ~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 378999999999998777655
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.44 E-value=2.8 Score=33.20 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 45 LTQIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 45 ~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
+.+|.+.. +++.+++||||+.+-++.
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESS
T ss_pred eEEEeECC--EEEEEEEecCCCcceecc
Confidence 56788888 899999999999988864
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.18 E-value=3.5 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=24.1
Q ss_pred EEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHH
Q 037976 265 SIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 265 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.+.|+|+.+. +.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888754 56999999999998777654
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=73.28 E-value=6.5 Score=29.35 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.7
Q ss_pred EEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHH
Q 037976 265 SIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 265 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.+.|++..+. +++|||++-.+++.+..+.+
T Consensus 12 ~~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 4677776543 77999999999998777665
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=72.35 E-value=7.3 Score=30.07 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.0
Q ss_pred CeEEcccccceeeCHHHHHHH
Q 037976 289 GTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 289 ~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 378999999999998765544
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.31 E-value=6.1 Score=30.55 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=17.2
Q ss_pred eEEcccccceeeCHHHHHHH
Q 037976 290 TKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 290 ~iiDSGTt~~~Lp~~~~~~l 309 (435)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 68999999999998777654
No 43
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=62.58 E-value=94 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.5
Q ss_pred CeEEcccccceeeCHHHHHHH
Q 037976 289 GTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 289 ~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.+++|||+...+..+++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 478999999999887665544
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.00 E-value=19 Score=32.77 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=28.1
Q ss_pred CCceEEEEeEEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHH
Q 037976 256 SSDYFIEVKSIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 256 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l 309 (435)
+++|. ....|||+.+. .++|||.|...|+++..+.+
T Consensus 103 ~GHF~---a~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFE---ANGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEE---EEEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 56776 47889998865 67999999999998665443
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=56.49 E-value=13 Score=29.03 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.0
Q ss_pred EEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 47 QIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 47 ~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
.+.|+. |.+.+++|||+.++-+.-
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcc
Confidence 456665 999999999999998863
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=54.44 E-value=14 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 48 IKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 48 i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
+.|.. +++.+++|||++.+-+..
T Consensus 3 v~InG--~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 3 ITVEG--VPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEECC--EEEEEEEECCCCeEEECH
Confidence 45555 899999999999998864
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=54.16 E-value=17 Score=28.63 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.6
Q ss_pred EEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHH
Q 037976 265 SIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESS 304 (435)
Q Consensus 265 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~ 304 (435)
.|.++++.+. ++||||+..+.++.+
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEK 33 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSG
T ss_pred EEeECCEEEE---------------EEEecCCCcceeccc
Confidence 4677777543 789999999999963
No 48
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=49.68 E-value=23 Score=33.71 Aligned_cols=44 Identities=9% Similarity=0.236 Sum_probs=29.5
Q ss_pred eEEEeeeeCCCCceEEEE---EEeCC---CCCeEEEEEEcCCCceeeeCC
Q 037976 30 ALVLPVTKDGSTLQYLTQ---IKQRT---PLVPVKLTLDLGGQFLWVDCE 73 (435)
Q Consensus 30 ~~~~p~~~~~~~~~Y~~~---i~vGt---P~q~~~v~~DTGSs~~Wv~~~ 73 (435)
..-.|+..+.....|.++ |.||. +.....+++|||++++.+|..
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 345666654323566655 57874 234567999999999999853
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.42 E-value=67 Score=29.37 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=37.7
Q ss_pred ccccccc-CCCCceEEEeeeeCCCCceEEEEEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 18 SPSIAKT-SFRPKALVLPVTKDGSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 18 ~~~~~~~-~~~~~~~~~p~~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
.|+-+.+ .-.....++-|+.+ .++.|.++..|-. |++..++|||-+.+-++-
T Consensus 80 ~P~~~~a~~~~~g~~~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~ 132 (215)
T COG3577 80 NPGRAWATLVGDGYQEVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNE 132 (215)
T ss_pred CCCCCccccCCCCceEEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCH
Confidence 4444444 33334456666663 5899999999988 999999999999887763
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=48.59 E-value=21 Score=28.16 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.6
Q ss_pred CeEEcccccceeeCHHHHHHH
Q 037976 289 GTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 289 ~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.+.+|||++...+|...|+.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 366999999999998777665
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.73 E-value=15 Score=30.64 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=18.7
Q ss_pred eeeechhhhcccEEEEECCCCEE
Q 037976 391 SIVIGGHQLEDNLLQFDLGTARL 413 (435)
Q Consensus 391 ~~ILG~~fl~~~yvvFD~~~~rI 413 (435)
..++|...|+..-.++|....++
T Consensus 95 ~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 95 EPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred ccchhhhhhhhccEEEcCCcceE
Confidence 44999999999999999866554
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=43.28 E-value=29 Score=30.48 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCeEEEEEEcCCCceeeeC
Q 037976 45 LTQIKQRTPLVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 45 ~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 72 (435)
..++.++.-..++.++|||||..-.+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 4555566666899999999999888764
No 53
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=40.24 E-value=48 Score=31.11 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCCceEEEeeeeCCCCceEEEE---EEeCC-----CCCeEEEEEEcCCCceeeeCC
Q 037976 26 FRPKALVLPVTKDGSTLQYLTQ---IKQRT-----PLVPVKLTLDLGGQFLWVDCE 73 (435)
Q Consensus 26 ~~~~~~~~p~~~~~~~~~Y~~~---i~vGt-----P~q~~~v~~DTGSs~~Wv~~~ 73 (435)
...+...+|+... ....|.+. |.||. ......++||||++.+|+|..
T Consensus 165 ~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 165 YTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred cCCceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 3455666777663 24566655 56775 246789999999999999854
No 54
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=38.64 E-value=53 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=31.0
Q ss_pred CCCceEEEeeeeCC-CCceEEEE---EEeCCC-------------CCeEEEEEEcCCCceeeeC
Q 037976 26 FRPKALVLPVTKDG-STLQYLTQ---IKQRTP-------------LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 26 ~~~~~~~~p~~~~~-~~~~Y~~~---i~vGtP-------------~q~~~v~~DTGSs~~Wv~~ 72 (435)
.+.+..-.|+..+. ....|.++ |+||.- .....+++|||++++.+|.
T Consensus 129 ~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 129 GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 34556677776542 23456554 678862 2345689999999999984
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.04 E-value=47 Score=27.81 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCceEEEEEEeCCCCCeEEEEEEcCCCceeee
Q 037976 40 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVD 71 (435)
Q Consensus 40 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~ 71 (435)
....+|++++|.. ++..+++|||...+-+.
T Consensus 21 ~v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 21 QVSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp -----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred CcceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 3568999999999 99999999999988875
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.50 E-value=47 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=22.5
Q ss_pred EEEEcCEEeecCCccccccccCCCCeEEcccccceeeCHHHHHHH
Q 037976 265 SIKINGHVIPMNTSLLSIDKKGFGGTKISTIRPYTVLESSIYEAF 309 (435)
Q Consensus 265 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDSGTt~~~Lp~~~~~~l 309 (435)
.+++||+.+. +.||||+-.+.++.+.++++
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 5778888764 67999999999998777664
No 57
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=37.45 E-value=38 Score=32.58 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=30.8
Q ss_pred CCceEEEeeeeCCC-CceEEEE---EEeCCCC--------CeEEEEEEcCCCceeeeC
Q 037976 27 RPKALVLPVTKDGS-TLQYLTQ---IKQRTPL--------VPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 27 ~~~~~~~p~~~~~~-~~~Y~~~---i~vGtP~--------q~~~v~~DTGSs~~Wv~~ 72 (435)
.++...+|+..+.. ...|.++ |+||.-. ....+++|||++++++|-
T Consensus 130 ~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 130 PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 34556678776432 3467665 5787522 233689999999999984
No 58
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=35.75 E-value=50 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=27.8
Q ss_pred CceEEEeeeeCCCCceEEEE---EEeCCC-----CCeEEEEEEcCCCceeeeC
Q 037976 28 PKALVLPVTKDGSTLQYLTQ---IKQRTP-----LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 28 ~~~~~~p~~~~~~~~~Y~~~---i~vGtP-----~q~~~v~~DTGSs~~Wv~~ 72 (435)
++..-+|+.. ...|.++ |.||.. .+...+++|||++.+++|-
T Consensus 177 g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 177 GEHTYVPVTR---KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred cceEEEecCc---CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 3444556543 2456555 677762 2346799999999999984
No 59
>PLN03146 aspartyl protease family protein; Provisional
Probab=34.85 E-value=60 Score=33.35 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=28.2
Q ss_pred eEEEeeeeCCCCceEEEE---EEeCC-----CCCe------EEEEEEcCCCceeeeC
Q 037976 30 ALVLPVTKDGSTLQYLTQ---IKQRT-----PLVP------VKLTLDLGGQFLWVDC 72 (435)
Q Consensus 30 ~~~~p~~~~~~~~~Y~~~---i~vGt-----P~q~------~~v~~DTGSs~~Wv~~ 72 (435)
....|+..+.....|++. |.||. |+.. -.++||||+.++++|-
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 345677643224567666 57886 2211 2689999999999984
No 60
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.28 E-value=19 Score=28.62 Aligned_cols=9 Identities=56% Similarity=0.604 Sum_probs=4.6
Q ss_pred CcchhhHHHHH
Q 037976 1 MALSSKFLLFC 11 (435)
Q Consensus 1 ~~~~~~~~~~~ 11 (435)
|+ ||++|++
T Consensus 1 Ma--SK~~llL 9 (95)
T PF07172_consen 1 MA--SKAFLLL 9 (95)
T ss_pred Cc--hhHHHHH
Confidence 66 5554433
No 61
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=30.60 E-value=64 Score=31.53 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEEeeeeCCCCceEEEE---EEeCCC------CCeEEEEEEcCCCceeeeC
Q 037976 31 LVLPVTKDGSTLQYLTQ---IKQRTP------LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 31 ~~~p~~~~~~~~~Y~~~---i~vGtP------~q~~~v~~DTGSs~~Wv~~ 72 (435)
.-+|+... ..|.++ |+||.. .....+++|||++++++|.
T Consensus 200 ~~~p~~~~---~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 200 VWTPITRK---YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred eEEeccCC---ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 34555542 456555 577753 2456789999999999984
No 62
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=27.38 E-value=87 Score=29.83 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred ceEEEeeeeCCCC---ceEEEE---EEeCCC-------CCeEEEEEEcCCCceeeeCC
Q 037976 29 KALVLPVTKDGST---LQYLTQ---IKQRTP-------LVPVKLTLDLGGQFLWVDCE 73 (435)
Q Consensus 29 ~~~~~p~~~~~~~---~~Y~~~---i~vGtP-------~q~~~v~~DTGSs~~Wv~~~ 73 (435)
....+|+..+... ..|.++ |.+|.. .....++||||++.+++|-.
T Consensus 138 ~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 138 DLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 3445666654321 455554 667752 24568899999999999843
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=26.45 E-value=66 Score=30.54 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=29.8
Q ss_pred CCceEEEeeeeCCCCceEEEE---EEeCCC----CCeEEEEEEcCCCceeeeC
Q 037976 27 RPKALVLPVTKDGSTLQYLTQ---IKQRTP----LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 27 ~~~~~~~p~~~~~~~~~Y~~~---i~vGtP----~q~~~v~~DTGSs~~Wv~~ 72 (435)
..+-.-+|+..+ ...|.++ |+||.- .....+++|||++.+++|-
T Consensus 164 ~g~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~ 214 (278)
T cd06097 164 KGEISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214 (278)
T ss_pred CCceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCH
Confidence 445556676643 3456555 567742 4567899999999999984
No 64
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=25.08 E-value=80 Score=30.95 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=27.8
Q ss_pred CceEEEeeeeCCCCceEEEE---EEeCCC---CCeEEEEEEcCCCceeeeC
Q 037976 28 PKALVLPVTKDGSTLQYLTQ---IKQRTP---LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 28 ~~~~~~p~~~~~~~~~Y~~~---i~vGtP---~q~~~v~~DTGSs~~Wv~~ 72 (435)
++...+|+.. ...|.++ +.||.- .++..++||||++.+++|-
T Consensus 179 g~l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~ 226 (329)
T cd05485 179 GNFTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPV 226 (329)
T ss_pred cceEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCH
Confidence 3445666653 3456655 467752 2445799999999999974
No 65
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=23.04 E-value=71 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=26.3
Q ss_pred eEEEeeeeCCCCceEEEE---EEeCCCC----CeEEEEEEcCCCceeeeC
Q 037976 30 ALVLPVTKDGSTLQYLTQ---IKQRTPL----VPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 30 ~~~~p~~~~~~~~~Y~~~---i~vGtP~----q~~~v~~DTGSs~~Wv~~ 72 (435)
---+|+.. ...|.++ |.||... ....+++|||++++++|-
T Consensus 168 l~~~pi~~---~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~ 214 (316)
T cd05486 168 LNWVPVTV---QGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPS 214 (316)
T ss_pred eEEEECCC---ceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCH
Confidence 34455543 3566655 6787531 235799999999999984
No 66
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=22.68 E-value=1e+02 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.1
Q ss_pred EEEEeCCCCC----eEEEEEEcCCCcee-ee
Q 037976 46 TQIKQRTPLV----PVKLTLDLGGQFLW-VD 71 (435)
Q Consensus 46 ~~i~vGtP~q----~~~v~~DTGSs~~W-v~ 71 (435)
+++.+..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 5778888732 67899999988654 44
No 67
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=21.89 E-value=87 Score=30.49 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=22.3
Q ss_pred ceEEEE---EEeCCC----CCeEEEEEEcCCCceeeeC
Q 037976 42 LQYLTQ---IKQRTP----LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 42 ~~Y~~~---i~vGtP----~q~~~v~~DTGSs~~Wv~~ 72 (435)
..|.++ |.||.. +....++||||++.+.+|.
T Consensus 185 ~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~ 222 (325)
T cd05490 185 AYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPV 222 (325)
T ss_pred eEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCH
Confidence 456544 578753 2346899999999999874
No 68
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.89 E-value=1.1e+02 Score=25.81 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=24.4
Q ss_pred CceEEEEEEeCCCCCeEEEEEEcCCCceeee
Q 037976 41 TLQYLTQIKQRTPLVPVKLTLDLGGQFLWVD 71 (435)
Q Consensus 41 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~ 71 (435)
.-.-.+.+.|.+ ++..++||+|++.-.+.
T Consensus 19 ~~vi~g~~~I~~--~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 19 PDVITGTFLINS--IPASVLIDSGATHSFIS 47 (135)
T ss_pred CCeEEEEEEecc--EEEEEEEecCCCcEEcc
Confidence 345677888888 99999999999988885
No 69
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.68 E-value=1.9e+02 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCceEEEeeeeCCCCceEEEE---EEeCC----CCC-----eEEEEEEcCCCceeeeC
Q 037976 26 FRPKALVLPVTKDGSTLQYLTQ---IKQRT----PLV-----PVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 26 ~~~~~~~~p~~~~~~~~~Y~~~---i~vGt----P~q-----~~~v~~DTGSs~~Wv~~ 72 (435)
..+...-+|+..... ..|.+. |.||. ++. ...+++|||++++++|.
T Consensus 227 ~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~ 284 (398)
T KOG1339|consen 227 YTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT 284 (398)
T ss_pred cCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence 444456788887643 466555 55885 322 25579999999999984
No 70
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=20.40 E-value=1e+02 Score=29.84 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=26.0
Q ss_pred CceEEEeeeeCCCCceEEEE---EEeCCC----CCeEEEEEEcCCCceeeeC
Q 037976 28 PKALVLPVTKDGSTLQYLTQ---IKQRTP----LVPVKLTLDLGGQFLWVDC 72 (435)
Q Consensus 28 ~~~~~~p~~~~~~~~~Y~~~---i~vGtP----~q~~~v~~DTGSs~~Wv~~ 72 (435)
+....+|+.. ...|.++ |.||.- .....+++|||++.+.+|-
T Consensus 174 g~l~~~p~~~---~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~ 222 (317)
T cd05478 174 GSLNWVPVTA---ETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPS 222 (317)
T ss_pred CceEEEECCC---CcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCH
Confidence 3334456543 2455554 567651 1234799999999999873
No 71
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=20.35 E-value=6.3e+02 Score=23.08 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.0
Q ss_pred eeeechhhhcccEEEEECCCCEEEEee
Q 037976 391 SIVIGGHQLEDNLLQFDLGTARLGFSS 417 (435)
Q Consensus 391 ~~ILG~~fl~~~yvvFD~~~~rIGfa~ 417 (435)
-.|||..|+|.|+=.-+.+ .+|-|..
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 3799999999887666665 4777764
No 72
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.27 E-value=2.8e+02 Score=21.73 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCeEEcccccceee---CHHHHHHHHHHHHHH
Q 037976 288 GGTKISTIRPYTVL---ESSIYEAFIEAFTKE 316 (435)
Q Consensus 288 ~~~iiDSGTt~~~L---p~~~~~~l~~~l~~~ 316 (435)
..+.||||....+| .++.|+.++++|+.+
T Consensus 57 ~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 57 RRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 45779999998877 467899999888753
Done!