BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037978
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
           (Aqp4m23) At 3.2 A Resolution By Electron
           Crystallography
          Length = 301

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 13  AWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGASMNP 72
           A + ++ E+++TF LV+T++A+  D KR +                 L    + GASMNP
Sbjct: 134 AGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNP 192

Query: 73  AVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYSVAF 110
           A SFGPAV+   W+NHW+YW+GP IG       Y   F
Sbjct: 193 ARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230


>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
           From Electron Micrograph
          Length = 340

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 13  AWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGASMNP 72
           A + ++ E+++TF LV+T++A+  D KR +                 L    + GASMNP
Sbjct: 173 AGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNP 231

Query: 73  AVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYSVAF 110
           A SFGPAV+   W+NHW+YW+GP IG       Y   F
Sbjct: 232 ARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269


>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
           By Electron Crystallography
          Length = 301

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 13  AWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGASMNP 72
           A + ++ E+++TF LV+T++A+  D KR +                 L    + GASMNP
Sbjct: 134 AGHGLLVELIITFQLVFTIFASC-DDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNP 192

Query: 73  AVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYSVAF 110
           A SFGPAV+   W+NHW+YW+GP IG       Y   F
Sbjct: 193 ARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 230


>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
           Mechanism Of Conductance
          Length = 223

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 13  AWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGASMNP 72
           A + ++ E+++TF LV+T++A+  D KR +                 L    + GASMNP
Sbjct: 125 AGHGLLVELIITFQLVFTIFASC-DSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNP 183

Query: 73  AVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXYSVAF 110
           A SFGPAV+   W+NHW+YW+GP IG       Y   F
Sbjct: 184 ARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221


>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
           Resolution
 pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
           An Open Pore State
 pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
           Observed In Loosely Packed 3d-Crystals
          Length = 263

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 7   LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 66
           L  GV    A + EI +T   V  ++AT  D +R                   L G  + 
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYT 179

Query: 67  GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIG 98
           GA MNPA SF PA+++  + NHWVYW+GP IG
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIG 211


>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
           State
          Length = 263

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 7   LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 66
           L  GV    A + EI +T   V  ++AT  D +R                   L G  + 
Sbjct: 121 LHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYT 179

Query: 67  GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIG 98
           GA MNPA SF PA+++  + NHWVYW+GP IG
Sbjct: 180 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIG 211


>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
           Closed Water Pore
          Length = 235

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 7   LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 66
           L  GV    A + EI +T   V  ++AT  D +R                   L G  + 
Sbjct: 117 LHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYT 175

Query: 67  GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIG 98
           GA MNPA SF PA+++  + NHWVYW+GP IG
Sbjct: 176 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIG 207


>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
           (Aqp Mip) In E. Coli Polar Lipids
          Length = 220

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 7   LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 66
           L  GV    A + EI +T   V  ++AT  D +R                   L G  + 
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYT 173

Query: 67  GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIG 98
           GA MNPA SF PA+++  + NHWVYW+GP IG
Sbjct: 174 GAGMNPARSFAPAILTRNFTNHWVYWVGPVIG 205


>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
           Crystallography
 pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
 pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
          Length = 269

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 7   LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFD 66
           L+ GV +   +  EI+ T  LV  V AT  D +R +                 L    + 
Sbjct: 129 LADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSVALGHLLAIDYT 187

Query: 67  GASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXY 106
           G  +NPA SFG AV++  + NHW++W+GPFIG       Y
Sbjct: 188 GCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIY 227


>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
 pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
 pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
 pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
          Length = 266

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 15  NAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAV 74
            A+V E+++TF L   ++A+  D +R +                 L G  F G SMNPA 
Sbjct: 131 QAMVVELILTFQLALCIFAS-TDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPAR 189

Query: 75  SFGPAVVSWTWD-NHWVYWLGPFIGXXXXXXXY 106
           SFGPAVV   +   HWV+W+GP +G       Y
Sbjct: 190 SFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILY 222


>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
          Length = 271

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 6   ALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAF 65
           AL+ GV +   +  EI+ T  LV  V AT  D +R +                 L    +
Sbjct: 130 ALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSVALGHLLAIDY 188

Query: 66  DGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGXXXXXXXY 106
            G  +NPA SFG +V++  + +HW++W+GPFIG       Y
Sbjct: 189 TGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIY 229


>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
           Open Conformation To 3.9 Resolution
 pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
           Open Conformation To 3.9 Resolution
 pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
           Open Conformation To 3.9 Resolution
 pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
           Open Conformation To 3.9 Resolution
          Length = 303

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20  EIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGAFDGASMNPAVS 75
           EI+ TF LVYTV+ +A DPKR                  +    LA     G  +NPA S
Sbjct: 168 EIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 226

Query: 76  FGPAVV---SWTWDNHWVYWLGPFIG 98
           FG AV+   +  WD+ W++W+GPFIG
Sbjct: 227 FGAAVIFNSNKVWDDQWIFWVGPFIG 252


>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
           S274e Mutant
          Length = 304

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20  EIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGAFDGASMNPAVS 75
           EI+ TF LVYTV+ +A DPKR                  +    LA     G  +NPA S
Sbjct: 191 EIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 249

Query: 76  FGPAVV---SWTWDNHWVYWLGPFIG 98
           FG AV+   +  WD+ W++W+GPFIG
Sbjct: 250 FGAAVIFNSNKVWDDQWIFWVGPFIG 275


>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
           Closed Conformation
 pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
           Closed Conformation
          Length = 281

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20  EIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGAFDGASMNPAVS 75
           EI+ TF LVYTV+ +A DPKR                  +    LA     G  +NPA S
Sbjct: 168 EIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 226

Query: 76  FGPAVV---SWTWDNHWVYWLGPFIG 98
           FG AV+   +  WD+ W++W+GPFIG
Sbjct: 227 FGAAVIFNSNKVWDDQWIFWVGPFIG 252


>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
           Mutant
 pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
           Mutant
          Length = 304

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20  EIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGAFDGASMNPAVS 75
           EI+ TF LVYTV+ +A DPKR                  +    LA     G  +NPA S
Sbjct: 191 EIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 249

Query: 76  FGPAVV---SWTWDNHWVYWLGPFIG 98
           FG AV+   +  WD+ W++W+GPFIG
Sbjct: 250 FGAAVIFNSNKVWDDQWIFWVGPFIG 275


>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
           Mutant
          Length = 300

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20  EIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNI----LAGGAFDGASMNPAVS 75
           EI+ TF LVYTV+ +A DPKR                  +    LA     G  +NPA S
Sbjct: 187 EIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARS 245

Query: 76  FGPAVV---SWTWDNHWVYWLGPFIG 98
           FG AV+   +  WD+ W++W+GPFIG
Sbjct: 246 FGAAVIFNSNKVWDDQWIFWVGPFIG 271


>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
           Aqy1, In A Closed Conformation At Ph 8.0
 pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
           Aqy1, In A Closed Conformation At Ph 3.5
          Length = 279

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 65  FDGASMNPAVSFGPAVVSWTWDN-HWVYWLGPFIG 98
           + GA +NPA SFGPAV + ++ N HW+YWLGP +G
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILG 252


>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
 pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
           Aqpm At 1.68a Resolution
          Length = 246

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 10  GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 69
           G+  W A++ E+V TF L+ T+   AVD +                    L  G   G+S
Sbjct: 140 GISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGIITTL--GNISGSS 197

Query: 70  MNPAVSFGPAVVSWT------WDNHWVYWLGPFIGXXXXXXXYS 107
           +NPA +FGP +          W+ + +Y +GP +G       Y 
Sbjct: 198 LNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQ 241


>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
 pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
          Length = 246

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 10  GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNXXXXXXXXXXXXXXXNILAGGAFDGAS 69
           G+G   A++ E + TF L+  +   AVD +                    +  G   G+S
Sbjct: 141 GIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITTI--GNITGSS 198

Query: 70  MNPAVSFGPAV-VSWTWDNHW----VYWLGPFIG 98
           +NPA +FGP +  S    N W    +Y +GP +G
Sbjct: 199 LNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVG 232


>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
           Tumerfaciens
 pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
           Tumerfaciens
          Length = 256

 Score = 28.9 bits (63), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 69  SMNPAVSFGPA--VVSWTWDNHWVYWLGPFIG 98
           S+NPA S G A  V  W     W++WL P +G
Sbjct: 210 SVNPARSTGQALFVGGWALQQLWLFWLAPIVG 241


>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
           Remodelling
          Length = 550

 Score = 28.1 bits (61), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 60  LAGGAFDGASMNPAVSFGP 78
           +AGGAF+G  M P V  GP
Sbjct: 416 VAGGAFEGTRMGPFVERGP 434


>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
           (Glpf) Mutation W48f, F200t
          Length = 281

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 63  GAFDGASMNPAVSFGPAVVSWT--WDN 87
           G   G +MNPA  FGP V +W   W N
Sbjct: 195 GPLTGTAMNPARDFGPKVFAWLAGWGN 221


>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
           (Glpf) With Substrate Glycerol
 pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
           (glpf) Without Substrate Glycerol
 pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
           (Glpf) Without Substrate Glycerol
          Length = 281

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 63  GAFDGASMNPAVSFGPAVVSWT--WDN 87
           G   G +MNPA  FGP V +W   W N
Sbjct: 195 GPLTGFAMNPARDFGPKVFAWLAGWGN 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,403,512
Number of Sequences: 62578
Number of extensions: 102813
Number of successful extensions: 150
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 35
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)