Query 037978
Match_columns 124
No_of_seqs 156 out of 1121
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 2.4E-30 5.3E-35 193.2 8.3 118 2-123 120-237 (238)
2 PLN00027 aquaporin TIP; Provis 100.0 3.1E-29 6.8E-34 189.2 13.2 122 3-124 131-252 (252)
3 PLN00166 aquaporin TIP2; Provi 100.0 1.6E-27 3.5E-32 179.6 13.0 118 6-124 132-249 (250)
4 PLN00184 aquaporin NIP1; Provi 99.9 5.3E-26 1.1E-30 174.9 12.0 107 8-116 172-278 (296)
5 PLN00182 putative aquaporin NI 99.9 1.3E-25 2.9E-30 171.7 12.5 106 5-112 150-255 (283)
6 PLN00026 aquaporin NIP; Provi 99.9 5.9E-26 1.3E-30 174.6 9.9 105 9-115 182-286 (298)
7 PLN00167 aquaporin TIP5; Provi 99.9 3E-25 6.5E-30 167.8 12.2 107 7-114 137-243 (256)
8 PTZ00016 aquaglyceroporin; Pro 99.9 2.8E-25 6.2E-30 170.8 11.6 108 5-113 175-292 (294)
9 PRK05420 aquaporin Z; Provisio 99.9 9.6E-25 2.1E-29 162.9 11.6 100 10-112 128-229 (231)
10 PF00230 MIP: Major intrinsic 99.9 2.9E-24 6.3E-29 159.1 10.8 104 3-106 124-227 (227)
11 PLN00183 putative aquaporin NI 99.9 3.8E-24 8.3E-29 163.1 11.1 107 7-115 154-260 (274)
12 cd00333 MIP Major intrinsic pr 99.9 7E-24 1.5E-28 157.8 11.6 104 5-109 121-228 (228)
13 COG0580 GlpF Glycerol uptake f 99.9 3.6E-23 7.8E-28 154.6 11.6 108 2-111 123-240 (241)
14 PLN00026 aquaporin NIP; Provi 99.9 1.6E-22 3.4E-27 155.6 11.0 107 6-112 63-173 (298)
15 TIGR00861 MIP MIP family chann 99.9 1.3E-22 2.9E-27 149.8 9.9 98 8-106 116-216 (216)
16 PLN00184 aquaporin NIP1; Provi 99.9 1.5E-21 3.2E-26 150.3 11.6 103 10-112 50-156 (296)
17 KOG0224 Aquaporin (major intri 99.9 3.5E-22 7.6E-27 152.0 6.2 108 4-112 158-276 (316)
18 PLN00183 putative aquaporin NI 99.8 1.4E-20 3.1E-25 143.5 10.8 110 3-112 34-147 (274)
19 PLN00167 aquaporin TIP5; Provi 99.8 2.5E-20 5.3E-25 141.1 12.1 104 9-112 17-129 (256)
20 PLN00182 putative aquaporin NI 99.8 2E-20 4.2E-25 143.3 10.6 103 10-112 38-144 (283)
21 PLN00166 aquaporin TIP2; Provi 99.8 3.8E-20 8.2E-25 139.6 10.4 103 10-112 14-125 (250)
22 PRK05420 aquaporin Z; Provisio 99.8 8.1E-20 1.8E-24 136.5 10.3 99 14-112 2-105 (231)
23 PTZ00016 aquaglyceroporin; Pro 99.8 1.6E-19 3.4E-24 139.0 10.1 101 12-112 48-152 (294)
24 PLN00027 aquaporin TIP; Provis 99.8 2.7E-19 5.8E-24 135.2 11.1 102 11-112 17-127 (252)
25 cd00333 MIP Major intrinsic pr 99.8 1.3E-19 2.8E-24 134.9 8.1 98 15-112 1-103 (228)
26 COG0580 GlpF Glycerol uptake f 99.8 8.6E-19 1.9E-23 131.1 7.8 103 11-113 2-111 (241)
27 TIGR00861 MIP MIP family chann 99.8 1.7E-18 3.7E-23 127.9 8.6 95 19-113 1-104 (216)
28 KOG0223 Aquaporin (major intri 99.8 3.3E-18 7.1E-23 128.0 9.7 106 7-112 4-113 (238)
29 KOG0224 Aquaporin (major intri 99.7 2.1E-18 4.6E-23 131.4 6.8 101 12-112 30-135 (316)
30 PF00230 MIP: Major intrinsic 99.7 1.4E-17 3E-22 123.4 6.4 102 11-112 5-116 (227)
31 PF14034 Spore_YtrH: Sporulati 53.3 27 0.00059 23.0 3.7 46 67-112 53-101 (102)
32 KOG3030 Lipid phosphate phosph 50.5 86 0.0019 24.8 6.7 46 67-112 210-264 (317)
33 COG2116 FocA Formate/nitrite f 48.8 1.1E+02 0.0024 23.5 7.0 90 13-106 31-129 (265)
34 PRK12446 undecaprenyldiphospho 47.2 4.2 9E-05 32.0 -1.0 22 61-82 6-27 (352)
35 PF09163 Form-deh_trans: Forma 46.4 32 0.0007 19.1 2.8 33 85-117 8-40 (44)
36 PF05814 DUF843: Baculovirus p 37.2 85 0.0019 19.9 4.0 38 23-60 4-41 (83)
37 COG0707 MurG UDP-N-acetylgluco 34.7 24 0.00051 28.2 1.5 25 61-85 5-29 (357)
38 PF14241 DUF4341: Domain of un 31.4 63 0.0014 19.1 2.6 54 46-101 7-60 (62)
39 PRK09979 putative rho operon l 31.1 16 0.00035 18.5 -0.0 17 64-80 5-21 (33)
40 PF13940 Ldr_toxin: Toxin Ldr, 29.5 94 0.002 16.3 2.8 23 89-111 11-33 (35)
41 PF14990 DUF4516: Domain of un 28.9 1.2E+02 0.0025 17.2 3.3 32 84-115 6-37 (47)
42 PRK14231 camphor resistance pr 25.6 2.2E+02 0.0047 19.3 6.6 27 83-109 90-116 (129)
43 PF06196 DUF997: Protein of un 25.3 1.4E+02 0.0031 18.6 3.6 22 91-112 50-71 (80)
44 COG0701 Predicted permeases [G 25.2 1.4E+02 0.0029 23.7 4.2 46 66-111 102-148 (317)
45 KOG2615 Permease of the major 24.6 76 0.0016 26.3 2.7 42 62-103 130-181 (451)
46 PF12036 DUF3522: Protein of u 22.7 3E+02 0.0064 19.8 7.7 45 45-103 119-163 (186)
47 PF09605 Trep_Strep: Hypotheti 22.3 2.4E+02 0.0052 20.2 4.8 28 88-115 158-185 (186)
48 COG3918 Predicted membrane pro 22.2 2.7E+02 0.0059 19.1 5.9 53 35-103 61-113 (153)
49 COG3301 NrfD Formate-dependent 22.1 3.9E+02 0.0085 21.1 6.1 38 73-112 233-270 (305)
50 PF03033 Glyco_transf_28: Glyc 21.9 16 0.00034 24.0 -1.4 19 65-83 7-25 (139)
51 PRK09877 2,3-diketo-L-gulonate 20.7 1.1E+02 0.0024 21.1 2.7 25 85-109 116-140 (157)
52 PF03773 DUF318: Predicted per 20.3 1.3E+02 0.0029 23.1 3.3 43 70-113 96-138 (307)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.4e-30 Score=193.19 Aligned_cols=118 Identities=53% Similarity=0.959 Sum_probs=106.9
Q ss_pred CCcccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhh
Q 037978 2 TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 81 (124)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~ 81 (124)
.+.+.++++.+.+|+++.|++.||.|++++++.++|+|++ .+.|+.+|+++...+++.+++||++|||||+|||++.
T Consensus 120 ~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~---~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv 196 (238)
T KOG0223|consen 120 LGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS---ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVV 196 (238)
T ss_pred cceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc---ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHH
Confidence 3556788999999999999999999999999977888874 7899999999999999999999999999999999999
Q ss_pred hcCccccchHhhhhhHHHHHHHHHHHHHhcCCCCCcCCCCCC
Q 037978 82 SWTWDNHWVYWLGPFIGAAIAAIAYSVAFIGPNTHEQLPSTD 123 (124)
Q Consensus 82 ~~~~~~~~vy~vap~~Ga~~a~~~~~~~~~~~~~~~~~~~~~ 123 (124)
.+.|+++|+||+||++|+++++++|++++.++ ++++.++.|
T Consensus 197 ~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~-~~~~~~~~~ 237 (238)
T KOG0223|consen 197 YGSWDDHWIYWVGPLLGAILAALIYRLVFIPD-ESEPTKSAD 237 (238)
T ss_pred hcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc-cccccCccC
Confidence 99999999999999999999999999999985 444444443
No 2
>PLN00027 aquaporin TIP; Provisional
Probab=99.96 E-value=3.1e-29 Score=189.17 Aligned_cols=122 Identities=83% Similarity=1.440 Sum_probs=109.7
Q ss_pred CcccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhh
Q 037978 3 SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 82 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~ 82 (124)
+.+.+.++.+.+++++.|+++||+|+++++..+.|+|+.....+.|+.+|+.+..++++.+++||+++||||||||++..
T Consensus 131 ~~~~~~~~~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~ 210 (252)
T PLN00027 131 SAFSLSSGVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 210 (252)
T ss_pred ccccCCCCccHHHHHHHHHHHHHHHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHh
Confidence 45667788899999999999999999999987566654333458899999999999999999999999999999999999
Q ss_pred cCccccchHhhhhhHHHHHHHHHHHHHhcCCCCCcCCCCCCC
Q 037978 83 WTWDNHWVYWLGPFIGAAIAAIAYSVAFIGPNTHEQLPSTDF 124 (124)
Q Consensus 83 ~~~~~~~vy~vap~~Ga~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (124)
+.|+++|+||+||++|+++++++|++++.+++.+++.++.||
T Consensus 211 ~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~~~~~~~~~ 252 (252)
T PLN00027 211 WTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHEQLPTTDY 252 (252)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCC
Confidence 999999999999999999999999999988788888888887
No 3
>PLN00166 aquaporin TIP2; Provisional
Probab=99.95 E-value=1.6e-27 Score=179.64 Aligned_cols=118 Identities=58% Similarity=1.054 Sum_probs=100.8
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCc
Q 037978 6 ALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTW 85 (124)
Q Consensus 6 ~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~ 85 (124)
...++.+..++++.|+++||+|+++++..+.++|+.......|+.+|+.+...+++.+++||+++|||||||||+..++|
T Consensus 132 ~~~~~~~~~~~~~~E~v~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~~~ 211 (250)
T PLN00166 132 GVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDF 211 (250)
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcCCC
Confidence 34557789999999999999999999987555554333457899999999999999999999999999999999999999
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHhcCCCCCcCCCCCCC
Q 037978 86 DNHWVYWLGPFIGAAIAAIAYSVAFIGPNTHEQLPSTDF 124 (124)
Q Consensus 86 ~~~~vy~vap~~Ga~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (124)
+++|+||++|++|+++++++|+.++.+.+.+.|.+ |||
T Consensus 212 ~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~~~~~~-~~~ 249 (250)
T PLN00166 212 SQIWIYWVGPLVGGALAGLIYGDVFIGSYAAAPTS-EDY 249 (250)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhcccCCCCCCC-ccc
Confidence 99999999999999999999999977645554444 344
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=99.94 E-value=5.3e-26 Score=174.86 Aligned_cols=107 Identities=33% Similarity=0.493 Sum_probs=94.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCccc
Q 037978 8 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDN 87 (124)
Q Consensus 8 ~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~~ 87 (124)
.++.+.+++++.|+++||+|++++++.+.++++ .+...++.+|+++...+++.+++||+++||||||||+++.+.|++
T Consensus 172 ~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~--~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~ 249 (296)
T PLN00184 172 SPVGSDLQAFVMEFIVTFYLMFIISGVATDNRA--IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKG 249 (296)
T ss_pred CcCCcHHHHHHHHHHHHHHHHHHHHheeccCcC--CCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccc
Confidence 344689999999999999999999987444432 234789999999999999999999999999999999999999999
Q ss_pred cchHhhhhhHHHHHHHHHHHHHhcCCCCC
Q 037978 88 HWVYWLGPFIGAAIAAIAYSVAFIGPNTH 116 (124)
Q Consensus 88 ~~vy~vap~~Ga~~a~~~~~~~~~~~~~~ 116 (124)
+|+||+||++|+++|+++|++++.++..+
T Consensus 250 ~WVy~vgPilGa~laal~y~~l~~~~~~~ 278 (296)
T PLN00184 250 IWIYIVAPTLGAIAGAWVYNTVRYTDKPL 278 (296)
T ss_pred cchHHhHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999998764443
No 5
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.93 E-value=1.3e-25 Score=171.71 Aligned_cols=106 Identities=34% Similarity=0.642 Sum_probs=93.5
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcC
Q 037978 5 FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWT 84 (124)
Q Consensus 5 ~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~ 84 (124)
+...|+.+.+++++.|+++|++|++++++.+.+++. .+...++.+|+++++.+++.+++||+++||||||+|++..+.
T Consensus 150 ~~~~p~~s~~~a~~~E~l~TfiLv~~i~~~~~~~~~--~~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~~ 227 (283)
T PLN00182 150 FGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRA--VGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGR 227 (283)
T ss_pred eeCCCCcchHHHHHHHHHHHHHHHHHHHhheecccc--CCcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhcc
Confidence 344566788999999999999999999986445432 234679999999999999999999999999999999999889
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 85 WDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 85 ~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
|+++|+||++|++|+++|+++|+++..+
T Consensus 228 ~~~~wvY~vap~lGA~lgally~~l~~~ 255 (283)
T PLN00182 228 YKGIWVYIVGPFVGIIAGGFVYNLIRFT 255 (283)
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999854
No 6
>PLN00026 aquaporin NIP; Provisional
Probab=99.93 E-value=5.9e-26 Score=174.55 Aligned_cols=105 Identities=34% Similarity=0.587 Sum_probs=93.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCcccc
Q 037978 9 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNH 88 (124)
Q Consensus 9 ~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~~~ 88 (124)
|+++..|+++.|+++||+|++++++.+.|+++ .+...++++|++++..+++.+++||+++||||||+|++..++|+++
T Consensus 182 p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~--~~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~ 259 (298)
T PLN00026 182 PSVSTGQAFALEFIITFNLLFVVTAVATDTRA--VGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAI 259 (298)
T ss_pred ecccHHHHHHHHHHHHHHHHHhheeeecCCCC--cCCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcCCchhe
Confidence 56789999999999999999999976445443 2346789999999999999999999999999999999999999999
Q ss_pred chHhhhhhHHHHHHHHHHHHHhcCCCC
Q 037978 89 WVYWLGPFIGAAIAAIAYSVAFIGPNT 115 (124)
Q Consensus 89 ~vy~vap~~Ga~~a~~~~~~~~~~~~~ 115 (124)
|+||+||++|+++|+++|+++..++++
T Consensus 260 wVy~vaPilGAilga~ly~~~~~~~~~ 286 (298)
T PLN00026 260 WIYLVAPTLGALAGAGTYTAVKLREED 286 (298)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999776433
No 7
>PLN00167 aquaporin TIP5; Provisional
Probab=99.93 E-value=3e-25 Score=167.85 Aligned_cols=107 Identities=49% Similarity=0.912 Sum_probs=94.7
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCcc
Q 037978 7 LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWD 86 (124)
Q Consensus 7 ~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~ 86 (124)
..++.+..++++.|+++|++|+++++.. .|+|+...+...|+.+|+.+..+.++.+++||+++||||||||++..+.|+
T Consensus 137 ~~~~~s~~~~~~~E~i~T~~L~~~i~~~-~~~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~~~~ 215 (256)
T PLN00167 137 IAEEMTGFGASVLEGVLTFGLVYTVYAA-GDPRRGLLGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAGSFK 215 (256)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHh-ccccccCCCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhccCcc
Confidence 3456678899999999999999999976 565543344578999999999999999999999999999999999998999
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHhcCCC
Q 037978 87 NHWVYWLGPFIGAAIAAIAYSVAFIGPN 114 (124)
Q Consensus 87 ~~~vy~vap~~Ga~~a~~~~~~~~~~~~ 114 (124)
++|+||+||++|+++++++|++++.|++
T Consensus 216 ~~wvywvgP~~Ga~l~a~~y~~l~~~~~ 243 (256)
T PLN00167 216 NQAVYWVGPLLGGAVAGLLYDNVVFPTQ 243 (256)
T ss_pred CcEEEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999987743
No 8
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.93 E-value=2.8e-25 Score=170.83 Aligned_cols=108 Identities=27% Similarity=0.424 Sum_probs=93.7
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhh--
Q 037978 5 FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS-- 82 (124)
Q Consensus 5 ~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~-- 82 (124)
+.+.|+.+..++++.|+++||+|++++++. .|+|+.......|+.+|+.+..+.++.+++||+++|||||||||++.
T Consensus 175 f~t~p~~s~~~a~~~E~i~T~iLv~~ila~-~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~ 253 (294)
T PTZ00016 175 FATYPREGNFYAIFSELILTAILLLVILAI-TDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAI 253 (294)
T ss_pred eeCCCCccHHHHHHHHHHHHHHHHHHHHHh-ccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHH
Confidence 455667889999999999999999999987 66655433457899999999999999999999999999999999986
Q ss_pred ----cCcc----ccchHhhhhhHHHHHHHHHHHHHhcCC
Q 037978 83 ----WTWD----NHWVYWLGPFIGAAIAAIAYSVAFIGP 113 (124)
Q Consensus 83 ----~~~~----~~~vy~vap~~Ga~~a~~~~~~~~~~~ 113 (124)
..|+ ++|+||+||++|+++|+++|++++.++
T Consensus 254 ~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 254 LWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred hccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 2454 689999999999999999999998774
No 9
>PRK05420 aquaporin Z; Provisional
Probab=99.92 E-value=9.6e-25 Score=162.95 Aligned_cols=100 Identities=29% Similarity=0.519 Sum_probs=89.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCc--cc
Q 037978 10 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTW--DN 87 (124)
Q Consensus 10 ~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~--~~ 87 (124)
..+..++++.|+++|++|+++++.. .|+|+ .....|+.+|+.+....++.+++||+++||||||||++..++| ++
T Consensus 128 ~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~--~~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~ 204 (231)
T PRK05420 128 GYSLLAALVCEVVLTAFFLLVILGA-TDKRA--PAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALEQ 204 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-hCCCC--CCcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCccc
Confidence 3578999999999999999999987 56554 2357899999999999999999999999999999999998755 58
Q ss_pred cchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 88 HWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 88 ~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+|+||++|++|+++++++|++++++
T Consensus 205 ~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 205 LWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred eEEeehHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999776
No 10
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.91 E-value=2.9e-24 Score=159.13 Aligned_cols=104 Identities=47% Similarity=0.818 Sum_probs=92.3
Q ss_pred CcccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhh
Q 037978 3 SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 82 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~ 82 (124)
.++.+.++.+..++++.|+++|++|+++++....++++...+.+.|+.+|+.+....+..+++||+++||||+|+|++..
T Consensus 124 ~~~~~~~~~s~~~~~~~E~~~t~il~~~i~~~~~~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~ 203 (227)
T PF00230_consen 124 FATTPPPGISLGQAFFSEFIGTFILVLVILAVADDKRKFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFS 203 (227)
T ss_dssp TSCGSTTTSSHHHHHHHHHHHHHHHHHHHHHHTSTTSSSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhhhHHHhhhhhhcccccccccccccceeEEEEEeecccccccccccccCchhhcCceeec
Confidence 45678889999999999999999999999988544444333457899999999999999999999999999999999999
Q ss_pred cCccccchHhhhhhHHHHHHHHHH
Q 037978 83 WTWDNHWVYWLGPFIGAAIAAIAY 106 (124)
Q Consensus 83 ~~~~~~~vy~vap~~Ga~~a~~~~ 106 (124)
+.|+++|+||++|++|+++|+++|
T Consensus 204 ~~~~~~wvy~~~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 204 GIWDYFWVYWVGPFIGAILAALLY 227 (227)
T ss_dssp THHTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEEehHHHHHHHHHhhC
Confidence 999999999999999999999987
No 11
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.91 E-value=3.8e-24 Score=163.09 Aligned_cols=107 Identities=29% Similarity=0.583 Sum_probs=92.9
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCcc
Q 037978 7 LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWD 86 (124)
Q Consensus 7 ~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~ 86 (124)
..|..+.+++++.|+++|++|++++++. .+++++ .+...++.+|+++++.+++.+++||+++||||+|+|++.+..|+
T Consensus 154 ~~p~~~~~~~~~~E~v~T~iLv~~i~~~-~~~~~~-~~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~~~~ 231 (274)
T PLN00183 154 TKPAQGCSSAFWVEFIATFIVMFLAASL-TSQPQS-LGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFK 231 (274)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhhee-eccccC-CCCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCCChh
Confidence 4455678999999999999999999976 343322 23457899999999999999999999999999999999998999
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHhcCCCC
Q 037978 87 NHWVYWLGPFIGAAIAAIAYSVAFIGPNT 115 (124)
Q Consensus 87 ~~~vy~vap~~Ga~~a~~~~~~~~~~~~~ 115 (124)
++|+||++|++|+++++++|++++.+...
T Consensus 232 ~~wvy~vapilGailaa~l~~~l~~~~~~ 260 (274)
T PLN00183 232 DIWIYITAPTIGAVAGALMFHLLRLRTQP 260 (274)
T ss_pred heehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999877443
No 12
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.91 E-value=7e-24 Score=157.75 Aligned_cols=104 Identities=48% Similarity=0.778 Sum_probs=91.4
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc
Q 037978 5 FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG-NIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW 83 (124)
Q Consensus 5 ~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~-~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~ 83 (124)
+.+.++.+..++++.|+++|++|+++++... ++++. ......++.+|+++...+++.+++||+++|||||+++++.++
T Consensus 121 ~~~~~~~~~~~~~~~E~v~T~~Lv~~i~~~~-~~~~~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~ 199 (228)
T cd00333 121 TYPSPGVSNGNAFFVEFIGTFILVLVVFATT-DDPNGPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTG 199 (228)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHc-cccccCCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhc
Confidence 3456678999999999999999999999874 43332 234578999999999999999999999999999999999998
Q ss_pred C---ccccchHhhhhhHHHHHHHHHHHHH
Q 037978 84 T---WDNHWVYWLGPFIGAAIAAIAYSVA 109 (124)
Q Consensus 84 ~---~~~~~vy~vap~~Ga~~a~~~~~~~ 109 (124)
. |+++|+||++|++|+++|+++|+++
T Consensus 200 ~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 200 LARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred cccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 5 9999999999999999999999864
No 13
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.6e-23 Score=154.62 Aligned_cols=108 Identities=32% Similarity=0.477 Sum_probs=91.7
Q ss_pred CCcccCCCC-ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHh
Q 037978 2 TSAFALSSG-VGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAV 80 (124)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l 80 (124)
.|.+++.|+ .+..++++.|+++||+|++.+++...|++. +..+.|+.+|+.++.++++.++.||..+|||||+|||+
T Consensus 123 ~g~~~t~p~~~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~--~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl 200 (241)
T COG0580 123 LGAFSTSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNA--NAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRL 200 (241)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCcc--cccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHH
Confidence 345556665 388999999999999999999997444443 33599999999999999999999999999999999999
Q ss_pred hhc---------CccccchHhhhhhHHHHHHHHHHHHHhc
Q 037978 81 VSW---------TWDNHWVYWLGPFIGAAIAAIAYSVAFI 111 (124)
Q Consensus 81 ~~~---------~~~~~~vy~vap~~Ga~~a~~~~~~~~~ 111 (124)
... ++.|+|+||++|++|+++|+++|+.++.
T Consensus 201 ~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 201 AHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred HHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 643 2248999999999999999999998764
No 14
>PLN00026 aquaporin NIP; Provisional
Probab=99.88 E-value=1.6e-22 Score=155.62 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=90.2
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CCCc-hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhh
Q 037978 6 ALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR-G-NIGI-IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 82 (124)
Q Consensus 6 ~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~-~-~~~~-~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~ 82 (124)
.+.++.+.+|.+++|+++||+|++++++.+..+++ . .... ..++.+|+++++.+++++++||+|+|||||+++++.+
T Consensus 63 ~~~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g 142 (298)
T PLN00026 63 LPPPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALR 142 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhC
Confidence 35567788999999999999999999975443221 1 1111 2468999999999999999999999999999999988
Q ss_pred c-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 83 W-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 83 ~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+ .|.+.|+||++|++|+++|+++++.++.+
T Consensus 143 ~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~ 173 (298)
T PLN00026 143 HFPWKHVPAYIAAQVSASICASFALKGVFHP 173 (298)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 79999999999999999999999998865
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.88 E-value=1.3e-22 Score=149.83 Aligned_cols=98 Identities=44% Similarity=0.801 Sum_probs=86.0
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc--C
Q 037978 8 SSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG-NIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW--T 84 (124)
Q Consensus 8 ~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~-~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~--~ 84 (124)
.++.+.+++++.|+++|++|+++++.. .+++++ ......++.+|+.+...+++.+++||+++|||||+++++.++ +
T Consensus 116 ~~~~~~~~~~~~E~i~T~~lv~~~~~~-~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~ 194 (216)
T TIGR00861 116 AAGVSSGQAFFVEFIGTAILVLVIFAT-TDPRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAG 194 (216)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhee-ecCCCCCCCCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcccc
Confidence 456789999999999999999999986 443332 223378999999999999999999999999999999999987 8
Q ss_pred ccccchHhhhhhHHHHHHHHHH
Q 037978 85 WDNHWVYWLGPFIGAAIAAIAY 106 (124)
Q Consensus 85 ~~~~~vy~vap~~Ga~~a~~~~ 106 (124)
|+++|+||++|++|+++++++|
T Consensus 195 ~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 195 WGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred ccceeHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998865
No 16
>PLN00184 aquaporin NIP1; Provisional
Probab=99.87 E-value=1.5e-21 Score=150.28 Aligned_cols=103 Identities=25% Similarity=0.279 Sum_probs=87.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCc--hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Cc
Q 037978 10 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKR-GNIGI--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TW 85 (124)
Q Consensus 10 ~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~-~~~~~--~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~ 85 (124)
+.+.++.+++|+++||+|++++++.+..... ..... ..++.+|+++++.+++++++||+|+|||||+++++.++ .|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 4567899999999999999999987532221 11112 34677799999999999999999999999999999987 89
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 86 DNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 86 ~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
.+.|+||++|++|+++|+++++.++..
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998854
No 17
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.5e-22 Score=152.00 Aligned_cols=108 Identities=26% Similarity=0.361 Sum_probs=97.7
Q ss_pred cccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc
Q 037978 4 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW 83 (124)
Q Consensus 4 ~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~ 83 (124)
++.++|+++.+++|+.|+++|.+|+..+++. +|+|+..+..+.|+.+|+.+.++-++.|..+|..+|||||||||++..
T Consensus 158 aTyP~p~ls~~n~F~DqfigTa~L~~~l~aI-~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~~ 236 (316)
T KOG0224|consen 158 ATYPAPHLSLWNGFFDQFIGTAMLVLCLFAI-TDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFTS 236 (316)
T ss_pred eecCchHhhhhHHHHHHHHHHHHHHhheeEE-ecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHHH
Confidence 4678999999999999999999999999987 788877777899999999999999999999999999999999999932
Q ss_pred -----------CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 84 -----------TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 84 -----------~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
.-.+.|+.|++|++|+++++++|++++.-
T Consensus 237 ~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~ 276 (316)
T KOG0224|consen 237 IAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGF 276 (316)
T ss_pred HHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeec
Confidence 11477999999999999999999998755
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.84 E-value=1.4e-20 Score=143.53 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=91.1
Q ss_pred CcccCCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCch--HHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHH
Q 037978 3 SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGN-IGII--APIAIGFIVGANILAGGAFDGASMNPAVSFGPA 79 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~-~~~~--~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~ 79 (124)
||-.-.-+.+.++++++|+++||++++++++.+.+++... .... .++.+|+++.+.+++.+++||+|+||||+++++
T Consensus 34 ~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~ 113 (274)
T PLN00183 34 GCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFA 113 (274)
T ss_pred cccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHH
Confidence 3333344567889999999999999999998755433211 1122 577999999999999999999999999999999
Q ss_pred hhhc-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 80 VVSW-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 80 l~~~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+.++ .|.+.|+||++|++|+++|+.+++.++..
T Consensus 114 l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 114 TFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9987 79999999999999999999999888754
No 19
>PLN00167 aquaporin TIP5; Provisional
Probab=99.84 E-value=2.5e-20 Score=141.07 Aligned_cols=104 Identities=23% Similarity=0.430 Sum_probs=88.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcCCCC--C--C----CCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHh
Q 037978 9 SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR--G--N----IGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAV 80 (124)
Q Consensus 9 ~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~--~--~----~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l 80 (124)
..-+.++.+++|+++||+|++++++++.+.+. + . .....++.+|+++++.+++++++||+|+||||++++++
T Consensus 17 ~~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 17 VTRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAV 96 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHH
Confidence 34567899999999999999999988553321 1 1 11257899999999999999999999999999999999
Q ss_pred hhc-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 81 VSW-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 81 ~~~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
.++ .|.+.|+||++|++|+++|+.+++.++.+
T Consensus 97 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 97 GGHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred hCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 877 79999999999999999999999888654
No 20
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.84 E-value=2e-20 Score=143.30 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CC--CchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Cc
Q 037978 10 GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG-NI--GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TW 85 (124)
Q Consensus 10 ~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~-~~--~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~ 85 (124)
+.+.++.+++|+++||+|+++.++++.+.+.. .. ....++++|+++++.+++++++||+|+||||++++++.++ .|
T Consensus 38 ~~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~ 117 (283)
T PLN00182 38 IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPW 117 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCH
Confidence 45677999999999999999999875542211 11 1234668999999999999999999999999999999988 89
Q ss_pred cccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 86 DNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 86 ~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
.+.|+||++|++|+++|+++.+.++..
T Consensus 118 ~~~~~Yi~aQ~lGa~~ga~~~~~~~~~ 144 (283)
T PLN00182 118 YQVPLYIGAQLTGSLLASLTLRLMFNV 144 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988743
No 21
>PLN00166 aquaporin TIP2; Provisional
Probab=99.83 E-value=3.8e-20 Score=139.65 Aligned_cols=103 Identities=21% Similarity=0.347 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCC-C---CC--CCCc--hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhh
Q 037978 10 GVGAWNAVVFEIVMTFGLVYTVYATAVDP-K---RG--NIGI--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 81 (124)
Q Consensus 10 ~~~~~~~~~~E~i~T~~lv~~~~~~~~~~-~---~~--~~~~--~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~ 81 (124)
+.+.+|++++|+++||+|+++.++++.+. + ++ .... ..++.+|+++++.+++++++||+|+||||++++++.
T Consensus 14 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~ 93 (250)
T PLN00166 14 SVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIG 93 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHh
Confidence 46678999999999999999999875431 1 11 1112 367889999999999999999999999999999998
Q ss_pred hc-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 82 SW-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 82 ~~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
++ .|.+.|+||++|++|+++|+.+++.++.+
T Consensus 94 g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 94 GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66 68899999999999999999999988754
No 22
>PRK05420 aquaporin Z; Provisional
Probab=99.82 E-value=8.1e-20 Score=136.46 Aligned_cols=99 Identities=25% Similarity=0.244 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-C-CC-Cc-hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Ccccc
Q 037978 14 WNAVVFEIVMTFGLVYTVYATAVDPKR-G-NI-GI-IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWDNH 88 (124)
Q Consensus 14 ~~~~~~E~i~T~~lv~~~~~~~~~~~~-~-~~-~~-~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~~~~ 88 (124)
.|.+++|+++|++|+++.++.+...++ + +. +. ..++.+|+++++.+++++++||+|+|||||+++++.++ +|.+.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 588999999999999999887443221 1 11 11 24789999999999999999999999999999999987 89999
Q ss_pred chHhhhhhHHHHHHHHHHHHHhcC
Q 037978 89 WVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 89 ~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
|+||++|++|+++|+.+.+.++.+
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999888877654
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.81 E-value=1.6e-19 Score=139.04 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--C-CCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Cccc
Q 037978 12 GAWNAVVFEIVMTFGLVYTVYATAVDPKRG--N-IGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWDN 87 (124)
Q Consensus 12 ~~~~~~~~E~i~T~~lv~~~~~~~~~~~~~--~-~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~~~ 87 (124)
+.++.+++|+++||+|+++.++++.+.... . .....++.+|+++++.+++.+++||+|+||||++++++.++ .|.+
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~ 127 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKK 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHH
Confidence 456899999999999999999875432211 1 11246788999999999999999999999999999999988 8999
Q ss_pred cchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 88 HWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 88 ~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
.|+||++|++|+++|+.+.+.++.+
T Consensus 128 ~~~YiiaQ~lGa~~ga~ll~~~~~~ 152 (294)
T PTZ00016 128 LPGYFVAQLLGAFVGAACVYGLYYG 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999998888765
No 24
>PLN00027 aquaporin TIP; Provisional
Probab=99.81 E-value=2.7e-19 Score=135.17 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCc--hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhh
Q 037978 11 VGAWNAVVFEIVMTFGLVYTVYATAVD------PKRGNIGI--IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVS 82 (124)
Q Consensus 11 ~~~~~~~~~E~i~T~~lv~~~~~~~~~------~~~~~~~~--~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~ 82 (124)
.+.+|++++|+++||+|++++++.+.. +++..... ..++.+|+++++.+++++++||+|+||||++++++.+
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g 96 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC
Confidence 346789999999999999999987421 11111112 4689999999999999999999999999999999877
Q ss_pred c-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 83 W-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 83 ~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+ .|.+.|+||++|++|+++|+.+++.+...
T Consensus 97 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 97 NITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6 68899999999999999999999887643
No 25
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.80 E-value=1.3e-19 Score=134.88 Aligned_cols=98 Identities=24% Similarity=0.308 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC--CC--chHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Cccccc
Q 037978 15 NAVVFEIVMTFGLVYTVYATAVDPKRGN--IG--IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWDNHW 89 (124)
Q Consensus 15 ~~~~~E~i~T~~lv~~~~~~~~~~~~~~--~~--~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~~~~~ 89 (124)
|.++.|+++||+++++.+++..+.+.+. .. ...++.+|+.+...+++.+++||+|+||||++++++.++ +|.+.|
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 3578999999999999999866544221 11 256899999999999999999999999999999999987 799999
Q ss_pred hHhhhhhHHHHHHHHHHHHHhcC
Q 037978 90 VYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 90 vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+||++|++|+++++.+++.++.+
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~ 103 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYG 103 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999988766
No 26
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.77 E-value=8.6e-19 Score=131.12 Aligned_cols=103 Identities=24% Similarity=0.289 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC---C--CCCCC-chHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-
Q 037978 11 VGAWNAVVFEIVMTFGLVYTVYATAVDP---K--RGNIG-IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW- 83 (124)
Q Consensus 11 ~~~~~~~~~E~i~T~~lv~~~~~~~~~~---~--~~~~~-~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~- 83 (124)
.+..+.+++|+++|++|++..++++... + ....+ ....+.+|+.+.+.+++.+++||+|+|||+|++.++.++
T Consensus 2 ~~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~f 81 (241)
T COG0580 2 TTLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRF 81 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCC
Confidence 3567788999999999999988775532 1 11111 247899999999999999999999999999999999998
Q ss_pred CccccchHhhhhhHHHHHHHHHHHHHhcCC
Q 037978 84 TWDNHWVYWLGPFIGAAIAAIAYSVAFIGP 113 (124)
Q Consensus 84 ~~~~~~vy~vap~~Ga~~a~~~~~~~~~~~ 113 (124)
+|++...||++|++|+++|+.+...++.++
T Consensus 82 p~~~v~~YivAQ~lGA~~ga~l~~~~~~~~ 111 (241)
T COG0580 82 PWRKVLPYIVAQVLGAFAGAALLYLLYYGK 111 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999888888773
No 27
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.77 E-value=1.7e-18 Score=127.92 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCC--C---CC---CCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Cccccc
Q 037978 19 FEIVMTFGLVYTVYATAVDPK--R---GN---IGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWDNHW 89 (124)
Q Consensus 19 ~E~i~T~~lv~~~~~~~~~~~--~---~~---~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~~~~~ 89 (124)
+|+++|++|+++.++++.+.+ + .. .....++.+|+.+...+++.+++||+|+||||++++++.++ +|.+.|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 499999999999999866521 1 11 11246889999999999999999999999999999999988 899999
Q ss_pred hHhhhhhHHHHHHHHHHHHHhcCC
Q 037978 90 VYWLGPFIGAAIAAIAYSVAFIGP 113 (124)
Q Consensus 90 vy~vap~~Ga~~a~~~~~~~~~~~ 113 (124)
+||++|++|+++++.+++.++.++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~ 104 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGL 104 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999888763
No 28
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.76 E-value=3.3e-18 Score=128.04 Aligned_cols=106 Identities=25% Similarity=0.272 Sum_probs=91.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCC--CchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc
Q 037978 7 LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR-GNI--GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW 83 (124)
Q Consensus 7 ~~~~~~~~~~~~~E~i~T~~lv~~~~~~~~~~~~-~~~--~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~ 83 (124)
.....+.+|++++||++|++++|..++++...++ ... .....+..|+++++.+++.+++||+|+|||++++..+.++
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence 3456788999999999999999999998654332 122 2356889999999999999999999999999999999988
Q ss_pred -CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 84 -TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 84 -~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
++.+...||++|++|+++|+.+.+.+.++
T Consensus 84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~ 113 (238)
T KOG0223|consen 84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPG 113 (238)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHheecCc
Confidence 68899999999999999999999998877
No 29
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.1e-18 Score=131.43 Aligned_cols=101 Identities=27% Similarity=0.386 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCC--chHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhc-Ccc
Q 037978 12 GAWNAVVFEIVMTFGLVYTVYATAVDPKR--GNIG--IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW-TWD 86 (124)
Q Consensus 12 ~~~~~~~~E~i~T~~lv~~~~~~~~~~~~--~~~~--~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~-~~~ 86 (124)
...|.+++||++|++|++..++++.+..- ...+ .-..+++|++++..+++.+.+||+|+|||+|++..+.++ .|.
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~ 109 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWK 109 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChh
Confidence 46789999999999999998887543211 1112 234689999999999999999999999999999999998 899
Q ss_pred ccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 87 NHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 87 ~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+..+|.++|++||++|+.....+|.+
T Consensus 110 k~p~Y~~aQ~iGAF~gaa~~y~~y~d 135 (316)
T KOG0224|consen 110 KFPVYVLAQFIGAFLGAATVYGLYYD 135 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887777655
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.71 E-value=1.4e-17 Score=123.40 Aligned_cols=102 Identities=25% Similarity=0.413 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC---C----CchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhh
Q 037978 11 VGAWNAVVFEIVMTFGLVYTVYATAV--DPKRGN---I----GIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV 81 (124)
Q Consensus 11 ~~~~~~~~~E~i~T~~lv~~~~~~~~--~~~~~~---~----~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~ 81 (124)
.+.+|.+++|+++|+++++..+++.. +++..+ . ....++.+|+++...+++.+++||+|+|||+|++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 56799999999999999999887533 222111 1 12356678999999999999999999999999999999
Q ss_pred hc-CccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 82 SW-TWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 82 ~~-~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
++ +|.+...|+++|++|+++|+.+.+.++++
T Consensus 85 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 85 GRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eeecccceeeEEeeccccccccccchhhcccC
Confidence 88 78999999999999999999999888766
No 31
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=53.35 E-value=27 Score=23.02 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=39.1
Q ss_pred CCCCChHhhHHHHhhhcCcc---ccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 67 GASMNPAVSFGPAVVSWTWD---NHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 67 G~~lNPA~sl~~~l~~~~~~---~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
|+.+.|-|.+---++.++.+ +..+|+++.++|+=.|..+.+++...
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 68999999999988887544 67899999999999999998887543
No 32
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=50.48 E-value=86 Score=24.79 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=36.2
Q ss_pred CCCCChHhhHHHHhhhc--------Cccccch-HhhhhhHHHHHHHHHHHHHhcC
Q 037978 67 GASMNPAVSFGPAVVSW--------TWDNHWV-YWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 67 G~~lNPA~sl~~~l~~~--------~~~~~~v-y~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+-.+.|-..|++.+... +.++||. -++|-++|+++|.+.++.+...
T Consensus 210 ~rllr~~l~f~~l~~A~~v~lSRV~DYkHHwsDV~aG~liG~~~A~~~~~~v~~~ 264 (317)
T KOG3030|consen 210 GRLLRPLLQFLPLMLALLVGLSRVSDYKHHWSDVLAGALIGAFVAYFLYRYVFPN 264 (317)
T ss_pred chhHHHHHHHHHHHHHHHHeeehhcccccccHHHHHHHHHHHHHHHHHHhhhcch
Confidence 45578888888877642 5678887 7788899999999999988765
No 33
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=48.85 E-value=1.1e+02 Score=23.55 Aligned_cols=90 Identities=19% Similarity=0.403 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchHHHHHHHHHHHHHHHhcCC-CCCCCChHhhHHHHhhhc--Ccc-
Q 037978 13 AWNAVVFEIVMTFGLVYTVYATAVDPKRGN--IGIIAPIAIGFIVGANILAGGAF-DGASMNPAVSFGPAVVSW--TWD- 86 (124)
Q Consensus 13 ~~~~~~~E~i~T~~lv~~~~~~~~~~~~~~--~~~~~~~~igl~v~~~~~~~g~~-tG~~lNPA~sl~~~l~~~--~~~- 86 (124)
.++++++-.+.++-+++.+-..+..++... .+...++.+++.+..++++.+.. ||..+ .+.....++ .|+
T Consensus 31 ~l~ai~AG~~i~lg~~~~~~~~~~~~~~~~~~~~lvg~~~F~~GLilVv~~g~ELfT~n~m----~~t~~~~~k~Is~~~ 106 (265)
T COG2116 31 LLLAILAGAFIGLGFLFYITVGTGLPGAPGGLAKLVGGLVFSLGLILVVIAGSELFTSNTM----LLTVGVLSKKISWGQ 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHhhhhCccccccchh----HHHHHHHhCCccHHH
Confidence 344555544444444443332212222211 12244556666666677766544 33222 233333333 333
Q ss_pred --ccc-hHhhhhhHHHHHHHHHH
Q 037978 87 --NHW-VYWLGPFIGAAIAAIAY 106 (124)
Q Consensus 87 --~~~-vy~vap~~Ga~~a~~~~ 106 (124)
+.| +-+++.++|+++.++++
T Consensus 107 ll~~w~~v~lgNliGa~~~a~l~ 129 (265)
T COG2116 107 LLRNWLVVYLGNLIGALFVALLF 129 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 46889999999999888
No 34
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=47.16 E-value=4.2 Score=32.03 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=18.4
Q ss_pred HhcCCCCCCCChHhhHHHHhhh
Q 037978 61 AGGAFDGASMNPAVSFGPAVVS 82 (124)
Q Consensus 61 ~~g~~tG~~lNPA~sl~~~l~~ 82 (124)
..++=||||+.||.+++-.+-.
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHh
Confidence 3466799999999999999874
No 35
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=46.44 E-value=32 Score=19.15 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=14.1
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHHhcCCCCCc
Q 037978 85 WDNHWVYWLGPFIGAAIAAIAYSVAFIGPNTHE 117 (124)
Q Consensus 85 ~~~~~vy~vap~~Ga~~a~~~~~~~~~~~~~~~ 117 (124)
|+..+=+...--.|+.+++.++.++..++.+.+
T Consensus 8 WKg~~Kpl~~~~~~~~~~~~~~Hyi~vGPn~v~ 40 (44)
T PF09163_consen 8 WKGVLKPLGAAGMGATAAAGFFHYITVGPNRVE 40 (44)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHH--B-S-
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 444444444444445555555555554424433
No 36
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=37.21 E-value=85 Score=19.91 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHH
Q 037978 23 MTFGLVYTVYATAVDPKRGNIGIIAPIAIGFIVGANIL 60 (124)
Q Consensus 23 ~T~~lv~~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~ 60 (124)
.+.++.+++++...|+++........+.+.+.++.+++
T Consensus 4 ~~~~~~Li~~~fi~~k~~~~s~li~~~LilfviF~~~L 41 (83)
T PF05814_consen 4 YSLFLALIVLGFIFDKNEGFSELIITLLILFVIFFCVL 41 (83)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 34555666777666766543344555556666655554
No 37
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=34.67 E-value=24 Score=28.17 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.6
Q ss_pred HhcCCCCCCCChHhhHHHHhhhcCc
Q 037978 61 AGGAFDGASMNPAVSFGPAVVSWTW 85 (124)
Q Consensus 61 ~~g~~tG~~lNPA~sl~~~l~~~~~ 85 (124)
..++-||||+-||.++...+....|
T Consensus 5 l~~gGTGGHv~pAlAl~~~l~~~g~ 29 (357)
T COG0707 5 LTAGGTGGHVFPALALAEELAKRGW 29 (357)
T ss_pred EEeCCCccchhHHHHHHHHHHhhCc
Confidence 3577899999999999999987766
No 38
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=31.38 E-value=63 Score=19.06 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCccccchHhhhhhHHHHH
Q 037978 46 IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAI 101 (124)
Q Consensus 46 ~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~~~~vy~vap~~Ga~~ 101 (124)
...+.+|++.....+..+.+.|.+=+=.+.+.+ ....+++-+.+.++=++|+.+
T Consensus 7 ~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~--~~~~~~W~~~fl~Gl~~g~~l 60 (62)
T PF14241_consen 7 IGGLLIGLAASLLLLLNGRIAGISGILSGLLSP--NKPDRDWRLAFLAGLILGGFL 60 (62)
T ss_pred HHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC--CCCCccHHHHHHHHHHHHHHH
Confidence 345678888888888888888866322222222 111233345666666666554
No 39
>PRK09979 putative rho operon leader peptide; Provisional
Probab=31.09 E-value=16 Score=18.49 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=12.7
Q ss_pred CCCCCCCChHhhHHHHh
Q 037978 64 AFDGASMNPAVSFGPAV 80 (124)
Q Consensus 64 ~~tG~~lNPA~sl~~~l 80 (124)
.++|.++||.--|..+.
T Consensus 5 qisgsslnpscrfssay 21 (33)
T PRK09979 5 QISGSSLNPSCRFSSAY 21 (33)
T ss_pred cccCCcCCccccccccc
Confidence 57899999987665543
No 40
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=29.47 E-value=94 Score=16.32 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.2
Q ss_pred chHhhhhhHHHHHHHHHHHHHhc
Q 037978 89 WVYWLGPFIGAAIAAIAYSVAFI 111 (124)
Q Consensus 89 ~vy~vap~~Ga~~a~~~~~~~~~ 111 (124)
|==..+|++.+++++++...+-.
T Consensus 11 WhDLAAP~iagIi~s~iv~w~~~ 33 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVGWLRN 33 (35)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHh
Confidence 55568999999999998877743
No 41
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=28.92 E-value=1.2e+02 Score=17.19 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=21.8
Q ss_pred CccccchHhhhhhHHHHHHHHHHHHHhcCCCC
Q 037978 84 TWDNHWVYWLGPFIGAAIAAIAYSVAFIGPNT 115 (124)
Q Consensus 84 ~~~~~~vy~vap~~Ga~~a~~~~~~~~~~~~~ 115 (124)
.|....-...+-++.-+.|+-+...+|+|+..
T Consensus 6 ~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 6 SWPSYLKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 35444444556677777888888899998543
No 42
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=25.58 E-value=2.2e+02 Score=19.25 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred cCccccchHhhhhhHHHHHHHHHHHHH
Q 037978 83 WTWDNHWVYWLGPFIGAAIAAIAYSVA 109 (124)
Q Consensus 83 ~~~~~~~vy~vap~~Ga~~a~~~~~~~ 109 (124)
+.|.....|++..++++++++++=..+
T Consensus 90 ~~~~~a~~y~~~s~~~gl~a~~lG~~l 116 (129)
T PRK14231 90 GAWLLAVSYVLASFIGGLIMVKFGRML 116 (129)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356567789999999998887764433
No 43
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=25.29 E-value=1.4e+02 Score=18.57 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=17.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhcC
Q 037978 91 YWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 91 y~vap~~Ga~~a~~~~~~~~~~ 112 (124)
-+++|++-.++..++.|+++++
T Consensus 50 Ci~~~il~~~l~~~~vk~~Fkd 71 (80)
T PF06196_consen 50 CIGGPILFIILVWLMVKFFFKD 71 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4668888888888888998876
No 44
>COG0701 Predicted permeases [General function prediction only]
Probab=25.20 E-value=1.4e+02 Score=23.66 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCCCCh-HhhHHHHhhhcCccccchHhhhhhHHHHHHHHHHHHHhc
Q 037978 66 DGASMNP-AVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYSVAFI 111 (124)
Q Consensus 66 tG~~lNP-A~sl~~~l~~~~~~~~~vy~vap~~Ga~~a~~~~~~~~~ 111 (124)
+...+|| +...-.+.++.+|+-...+.++-++=+++.+.+..++++
T Consensus 102 aaP~iNp~~i~~t~~~fg~~~~~~~~r~v~~li~avliG~i~~~~~~ 148 (317)
T COG0701 102 AAPLINPIAITSTYAAFGSQWGATLIRVVAGLIIAVLIGLIVSKLFK 148 (317)
T ss_pred cCCccCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899 666677777778988899999999988888888887763
No 45
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=24.63 E-value=76 Score=26.29 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=28.4
Q ss_pred hcCCCCCCCChHhhHHHHhhhc----------CccccchHhhhhhHHHHHHH
Q 037978 62 GGAFDGASMNPAVSFGPAVVSW----------TWDNHWVYWLGPFIGAAIAA 103 (124)
Q Consensus 62 ~g~~tG~~lNPA~sl~~~l~~~----------~~~~~~vy~vap~~Ga~~a~ 103 (124)
.++++-+-+|+.|++..-+... +-.+..-+++||++|+.++-
T Consensus 130 l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 130 LGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3455566777777777666642 11234568999999998887
No 46
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=22.74 E-value=3e+02 Score=19.77 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCccccchHhhhhhHHHHHHH
Q 037978 45 IIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAA 103 (124)
Q Consensus 45 ~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~~~~vy~vap~~Ga~~a~ 103 (124)
...|+.+|+.+....+.......-.++| ..|.||...++++++-+
T Consensus 119 ~~~Pi~~~~~i~~~~w~~r~~~~~~~~~--------------~~~~~~~~~l~~g~~~~ 163 (186)
T PF12036_consen 119 TIGPILIGLLILLVSWLYRCRRRRRCYP--------------PSWRRWLFYLLPGIIFF 163 (186)
T ss_pred hHHHHHHHHHHHHHHHheecccCCccCC--------------hHHHHHHHHHHHHHHHH
Confidence 3556666665555555443333333333 34567777666555443
No 47
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=22.30 E-value=2.4e+02 Score=20.17 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.2
Q ss_pred cchHhhhhhHHHHHHHHHHHHHhcCCCC
Q 037978 88 HWVYWLGPFIGAAIAAIAYSVAFIGPNT 115 (124)
Q Consensus 88 ~~vy~vap~~Ga~~a~~~~~~~~~~~~~ 115 (124)
..+-.+.-++++++|+++-+.++++|.+
T Consensus 158 ~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 158 LIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778889999999999999888543
No 48
>COG3918 Predicted membrane protein [Function unknown]
Probab=22.19 E-value=2.7e+02 Score=19.13 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=30.1
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHhhhcCccccchHhhhhhHHHHHHH
Q 037978 35 AVDPKRGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAA 103 (124)
Q Consensus 35 ~~~~~~~~~~~~~~~~igl~v~~~~~~~g~~tG~~lNPA~sl~~~l~~~~~~~~~vy~vap~~Ga~~a~ 103 (124)
++|+..+.+..-.|--+|.-+.+..+ +| +..+..|.+-|.-.++-.+|+.++.
T Consensus 61 vtDqlPsTPsRkVp~qFgaRiimGAf-----~G-----------AvIGatgg~~~gGLiaGvIGAViGT 113 (153)
T COG3918 61 VTDQLPSTPSRKVPPQFGARIIMGAF-----AG-----------AVIGATGGYRWGGLIAGVIGAVIGT 113 (153)
T ss_pred HhccCCCCCCCcCChhHhhhhhhhhh-----cc-----------ccccccCCcEEehhhHhHHHHHHhc
Confidence 45665554444555555555444333 34 2334467777877777777777663
No 49
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=22.09 E-value=3.9e+02 Score=21.06 Aligned_cols=38 Identities=21% Similarity=0.478 Sum_probs=25.9
Q ss_pred HhhHHHHhhhcCccccchHhhhhhHHHHHHHHHHHHHhcC
Q 037978 73 AVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYSVAFIG 112 (124)
Q Consensus 73 A~sl~~~l~~~~~~~~~vy~vap~~Ga~~a~~~~~~~~~~ 112 (124)
+|++..++.++.| .|++|++-..=+++...+.+.-.++
T Consensus 233 ~~a~~~al~gg~~--a~~fwiGV~giGliiplll~~~~~~ 270 (305)
T COG3301 233 ARALATALAGGFW--AWVFWIGVLGLGLIIPLLLKFGVNP 270 (305)
T ss_pred HHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5777778877777 6888887665446666666665555
No 50
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=21.90 E-value=16 Score=23.98 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.1
Q ss_pred CCCCCCChHhhHHHHhhhc
Q 037978 65 FDGASMNPAVSFGPAVVSW 83 (124)
Q Consensus 65 ~tG~~lNPA~sl~~~l~~~ 83 (124)
=|+||+||...++-++...
T Consensus 7 Gt~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 7 GTRGHVYPFLALARALRRR 25 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHhcc
Confidence 3678999999999999853
No 51
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=20.66 E-value=1.1e+02 Score=21.06 Aligned_cols=25 Identities=12% Similarity=-0.108 Sum_probs=15.9
Q ss_pred ccccchHhhhhhHHHHHHHHHHHHH
Q 037978 85 WDNHWVYWLGPFIGAAIAAIAYSVA 109 (124)
Q Consensus 85 ~~~~~vy~vap~~Ga~~a~~~~~~~ 109 (124)
.+..|+|...+..|.+++....+.+
T Consensus 116 ip~~~~y~~~~~~~~l~~~~~~~~l 140 (157)
T PRK09877 116 LPIGLMYAACLPTSLVIALFELRHL 140 (157)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888777777766664444433
No 52
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=20.34 E-value=1.3e+02 Score=23.10 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=30.9
Q ss_pred CChHhhHHHHhhhcCccccchHhhhhhHHHHHHHHHHHHHhcCC
Q 037978 70 MNPAVSFGPAVVSWTWDNHWVYWLGPFIGAAIAAIAYSVAFIGP 113 (124)
Q Consensus 70 lNPA~sl~~~l~~~~~~~~~vy~vap~~Ga~~a~~~~~~~~~~~ 113 (124)
+||.+-+.....- .|+....+++.-+.-+++.+++.+.+.+++
T Consensus 96 ~n~~~~~~~~~~l-g~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 96 LNPIVLLLTWAAL-GWKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred hhHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5654443333222 377778899999999999999999887765
Done!