BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037980
MGKYELDIQGNNVKVTVVDHAALIDDNIAALKALLKRQRLVGIDVKFNHRCTKKAEMLIL
CAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKTAVELGHL
AAR

High Scoring Gene Products

Symbol, full name Information P value
AT3G12420 protein from Arabidopsis thaliana 1.1e-12
AT3G12410 protein from Arabidopsis thaliana 8.9e-11
AT2G36110 protein from Arabidopsis thaliana 3.6e-09
AT3G12440 protein from Arabidopsis thaliana 1.5e-08
AT3G12460 protein from Arabidopsis thaliana 2.5e-07
AT3G12430 protein from Arabidopsis thaliana 7.0e-07
AT3G12470 protein from Arabidopsis thaliana 7.5e-06
AT3G62320 protein from Arabidopsis thaliana 8.0e-05
wrn
Werner syndrome
gene_product from Danio rerio 0.00073

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037980
        (123 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092497 - symbol:AT3G12420 species:3702 "Arabi...   132  1.1e-12   2
TAIR|locus:2092482 - symbol:AT3G12410 species:3702 "Arabi...   132  8.9e-11   2
TAIR|locus:2053519 - symbol:AT2G36110 species:3702 "Arabi...   137  3.6e-09   1
TAIR|locus:2092442 - symbol:AT3G12440 species:3702 "Arabi...   104  1.5e-08   2
TAIR|locus:2092457 - symbol:AT3G12460 species:3702 "Arabi...   105  2.5e-07   2
TAIR|locus:2092507 - symbol:AT3G12430 species:3702 "Arabi...   117  7.0e-07   1
TAIR|locus:2092472 - symbol:AT3G12470 species:3702 "Arabi...   107  7.5e-06   1
TAIR|locus:2095994 - symbol:AT3G62320 species:3702 "Arabi...    95  8.0e-05   1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe...   100  0.00073   1


>TAIR|locus:2092497 [details] [associations]
            symbol:AT3G12420 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] InterPro:IPR012337 EMBL:CP002686
            GO:GO:0003676 GO:GO:0004527 SUPFAM:SSF53098 IPI:IPI01020114
            RefSeq:NP_187848.2 UniGene:At.74525 ProteinModelPortal:F4J9R7
            EnsemblPlants:AT3G12420.1 GeneID:820421 KEGG:ath:AT3G12420
            Uniprot:F4J9R7
        Length = 185

 Score = 132 (51.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 31/66 (46%), Positives = 40/66 (60%)

Query:    55 AEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKTA 114
             A+ L LC GN+CLIIQLCH  Q+P SL+ FL D    F G+  N + D  G+   R K  
Sbjct:   110 ADTLQLCVGNQCLIIQLCHCDQVPTSLRSFLTDPNTTFVGV-WNSQ-DA-GKL-ARSKHQ 165

Query:   115 VELGHL 120
             +E+G L
Sbjct:   166 LEIGKL 171

 Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query:     3 KYELDIQGNNVKVTVVDHAALI 24
             +Y +D+ GN + VTV    A+I
Sbjct:    16 EYSIDVFGNTLSVTVTSDFAII 37


>TAIR|locus:2092482 [details] [associations]
            symbol:AT3G12410 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
            SMART:SM00474 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676
            GO:GO:0005622 SUPFAM:SSF53098 EMBL:AP002047 GO:GO:0008408
            EMBL:AC069474 HOGENOM:HOG000152188 ProtClustDB:CLSN2683821
            EMBL:AK176143 IPI:IPI00544772 RefSeq:NP_187847.1 UniGene:At.50891
            ProteinModelPortal:Q9LHG7 PRIDE:Q9LHG7 EnsemblPlants:AT3G12410.1
            GeneID:820420 KEGG:ath:AT3G12410 TAIR:At3g12410 eggNOG:NOG253679
            InParanoid:Q9LHG7 OMA:YNTHLEY PhylomeDB:Q9LHG7
            Genevestigator:Q9LHG7 Uniprot:Q9LHG7
        Length = 230

 Score = 132 (51.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
 Identities = 32/67 (47%), Positives = 42/67 (62%)

Query:    55 AEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDG-LGRCNLRCKT 113
             A++L LC GNRCLIIQL +  Q+P +L+ FLAD    F G+  NG+  G L RC   C  
Sbjct:    93 ADILQLCVGNRCLIIQLGYCDQVPNNLRSFLADPETTFVGV-WNGQDAGKLARC---CHQ 148

Query:   114 AVELGHL 120
              +E+G L
Sbjct:   149 -LEIGEL 154

 Score = 34 (17.0 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query:     3 KYELDIQGNNVKVTVVDHAALIDD---NIXXXXXXXXRQRLVGIDVKF 47
             +Y +D  G+   VTV   +++I     N+           +VG+ V++
Sbjct:    17 EYSVDFFGDEFIVTVTWDSSVISRWIRNVLFNNRFSSHPLVVGVGVQW 64


>TAIR|locus:2053519 [details] [associations]
            symbol:AT2G36110 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA;ISS] InterPro:IPR002562 InterPro:IPR012337
            Pfam:PF01612 SMART:SM00474 EMBL:CP002685 GO:GO:0016740
            GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
            EMBL:AC007135 EMBL:AY649245 IPI:IPI00518056 PIR:A84777
            RefSeq:NP_181155.1 UniGene:At.37587 ProteinModelPortal:Q9SIH3
            SMR:Q9SIH3 PRIDE:Q9SIH3 EnsemblPlants:AT2G36110.1 GeneID:818184
            KEGG:ath:AT2G36110 TAIR:At2g36110 InParanoid:Q9SIH3 OMA:FRHQLEI
            PhylomeDB:Q9SIH3 ProtClustDB:CLSN2913262 Genevestigator:Q9SIH3
            Uniprot:Q9SIH3
        Length = 239

 Score = 137 (53.3 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query:    40 LVGIDVKFNHRCTKKA-EMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGM 95
             +VG+DV++    +    ++L LC GNRCLIIQL H  +IPE L+ FL DETI F G+
Sbjct:    57 VVGLDVQWTPGGSDPPPDILQLCVGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGV 113


>TAIR|locus:2092442 [details] [associations]
            symbol:AT3G12440 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
            SMART:SM00474 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676
            GO:GO:0005622 SUPFAM:SSF53098 EMBL:AP002047 GO:GO:0008408
            EMBL:AC069474 HOGENOM:HOG000152188 IPI:IPI00533131
            RefSeq:NP_187850.1 UniGene:At.65083 ProteinModelPortal:Q9LHG4
            SMR:Q9LHG4 EnsemblPlants:AT3G12440.1 GeneID:820423
            KEGG:ath:AT3G12440 TAIR:At3g12440 eggNOG:NOG282953
            InParanoid:Q9LHG4 PhylomeDB:Q9LHG4 Genevestigator:Q9LHG4
            Uniprot:Q9LHG4
        Length = 353

 Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 24/65 (36%), Positives = 32/65 (49%)

Query:    50 RCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNL 109
             R    A  L LC GNRC+IIQL +  ++P  L++FL D    F G   +     L R   
Sbjct:   211 RSDPPANTLQLCVGNRCIIIQLFYCNRVPHVLRRFLGDRNHTFVGFWNSQDAGKLKRSRH 270

Query:   110 RCKTA 114
             R + A
Sbjct:   271 RLEIA 275

 Score = 52 (23.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query:     2 GKYELDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKF 47
             GK+ +D  G+   VTV    ++I   I        R  +VG+ V++
Sbjct:    15 GKFSVDFFGDEFIVTVTSDPSVIGQWIHDVLRFSSRPLVVGVGVQW 60


>TAIR|locus:2092457 [details] [associations]
            symbol:AT3G12460 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
            SMART:SM00474 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676
            GO:GO:0005622 SUPFAM:SSF53098 EMBL:AP002047 GO:GO:0008408
            EMBL:AC069474 eggNOG:KOG4373 HOGENOM:HOG000152188
            ProtClustDB:CLSN2683821 IPI:IPI00526836 RefSeq:NP_187852.1
            UniGene:At.50599 ProteinModelPortal:Q9LHG2 DNASU:820425
            EnsemblPlants:AT3G12460.1 GeneID:820425 KEGG:ath:AT3G12460
            TAIR:At3g12460 InParanoid:Q9LHG2 PhylomeDB:Q9LHG2
            Genevestigator:Q9LHG2 Uniprot:Q9LHG2
        Length = 242

 Score = 105 (42.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query:    55 AEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGM 95
             A+ L LC GNRC+IIQL +  ++P+ L+ FLAD    F G+
Sbjct:   101 ADTLQLCVGNRCIIIQLRYCERVPQVLRNFLADRDNTFVGI 141

 Score = 33 (16.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query:     3 KYELDIQGNNVKVTVVDHAALI 24
             +Y +D  G  + VTV    ++I
Sbjct:    16 RYSVDFFGEELFVTVTPDPSVI 37


>TAIR|locus:2092507 [details] [associations]
            symbol:AT3G12430 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006139 "nucleobase-containing compound metabolic process"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] InterPro:IPR002562 InterPro:IPR012337 SMART:SM00474
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676 GO:GO:0005622
            SUPFAM:SSF53098 GO:GO:0008408 EMBL:AC069474 IPI:IPI00535476
            RefSeq:NP_187849.1 UniGene:At.65082 ProteinModelPortal:Q9C7A5
            EnsemblPlants:AT3G12430.1 GeneID:820422 KEGG:ath:AT3G12430
            TAIR:At3g12430 eggNOG:KOG4373 HOGENOM:HOG000152188
            InParanoid:Q9C7A5 OMA:IIIQLSH PhylomeDB:Q9C7A5
            ProtClustDB:CLSN2683821 Genevestigator:Q9C7A5 Uniprot:Q9C7A5
        Length = 238

 Score = 117 (46.2 bits), Expect = 7.0e-07, P = 7.0e-07
 Identities = 27/72 (37%), Positives = 37/72 (51%)

Query:    46 KFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLG 105
             +   R    A+ L LC GNRC+IIQL H  ++P+ L+ FLAD    F G+  +     L 
Sbjct:    92 RVRRRFDPPADTLQLCVGNRCIIIQLSHCERVPQVLRNFLADRDYTFVGIWNSQDAGKLK 151

Query:   106 RCNLRCKTAVEL 117
             R     + AV L
Sbjct:   152 RSKHELEIAVLL 163


>TAIR|locus:2092472 [details] [associations]
            symbol:AT3G12470 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002686 GO:GO:0003676
            GO:GO:0004527 SUPFAM:SSF53098 EMBL:AP002047 EMBL:AC069474
            EMBL:BT025648 IPI:IPI00521942 RefSeq:NP_566424.1 UniGene:At.39591
            ProteinModelPortal:Q9LHG1 SMR:Q9LHG1 IntAct:Q9LHG1
            EnsemblPlants:AT3G12470.1 GeneID:820426 KEGG:ath:AT3G12470
            TAIR:At3g12470 InParanoid:Q9LHG1 OMA:GSRCLII PhylomeDB:Q9LHG1
            ProtClustDB:CLSN2914969 Genevestigator:Q9LHG1 Uniprot:Q9LHG1
        Length = 220

 Score = 107 (42.7 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 39/125 (31%), Positives = 62/125 (49%)

Query:     3 KYELDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRL----VGIDVKFNHRCTKK---A 55
             K+ +D  G+++ VTV   A++I   I           +    VGI V++    +      
Sbjct:    16 KHFVDFFGDDLIVTVTPTASVIRRWIRSVRSYNRNHSVHPLVVGIGVQWRPDSSDPDPPP 75

Query:    56 EMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKTAV 115
             + L LC G+RCLIIQL +   +P+ L+ FLAD    F G+  NG+     +   +C+  V
Sbjct:    76 KTLQLCVGSRCLIIQLGYNYGLPKVLRTFLADPKTTFVGV-WNGQDQ---KKLEKCRHRV 131

Query:   116 ELGHL 120
             E+G L
Sbjct:   132 EIGKL 136


>TAIR|locus:2095994 [details] [associations]
            symbol:AT3G62320 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012337 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 SUPFAM:SSF53098
            EMBL:AL162507 eggNOG:KOG4373 ProtClustDB:CLSN2684128
            IPI:IPI00528255 PIR:T48024 RefSeq:NP_191791.1 UniGene:At.50306
            ProteinModelPortal:Q9LZQ8 DNASU:825405 EnsemblPlants:AT3G62320.1
            GeneID:825405 KEGG:ath:AT3G62320 TAIR:At3g62320
            HOGENOM:HOG000153039 OMA:CNKENAN PhylomeDB:Q9LZQ8
            Genevestigator:Q9LZQ8 Uniprot:Q9LZQ8
        Length = 171

 Score = 95 (38.5 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 33/121 (27%), Positives = 54/121 (44%)

Query:     2 GKYELDIQGNNVKVTVVDHAALID-DNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLIL 60
             G+  + +  N+  +T      L + +N          + +VG D ++      K  +L L
Sbjct:    12 GRIRVTVARNDRDITSEVRTFLCNKENANKIIGLDTERSVVGGDSEYPPE--SKLVILEL 69

Query:    61 CAGNRCLIIQLCHL--GQIPESLKKFLADETICFAGMEMNGKVDGL-GRCNLRCKTAVEL 117
               G  CLII L ++   ++P SL  FL      F G+ +N  +  L   C L CK AV++
Sbjct:    70 SDGQNCLIIPLPYVQGNKLPVSLTNFLNLPDFTFTGVGINKALKMLKSECGLTCKNAVDI 129

Query:   118 G 118
             G
Sbjct:   130 G 130


>ZFIN|ZDB-GENE-070702-2 [details] [associations]
            symbol:wrn "Werner syndrome" species:7955 "Danio
            rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA] [GO:0044237
            "cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
            evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
            replication" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
            InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
            InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
            Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
            PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
            SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
            GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
            GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
            TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
            ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
        Length = 1436

 Score = 100 (40.3 bits), Expect = 0.00073, P = 0.00073
 Identities = 29/87 (33%), Positives = 43/87 (49%)

Query:    41 VGIDVK----FNHRCTKKAEMLILCAG-NRCLIIQLCHLGQIPESLKKFLADETICFAGM 95
             VG D++    F    TKK  M+ LCA  ++C +  +  +   P  LK FL DE I   G+
Sbjct:    67 VGFDLEWPPSFTKGKTKKVAMVQLCASEDKCYLFHISSMSGFPPGLKMFLEDENIMKVGV 126

Query:    96 EMNG-KVDGLGRCNLRCKTAVELGHLA 121
              + G K   L   +++ K  V+L  LA
Sbjct:   127 GIEGDKWKLLSDYDIKLKNIVDLSDLA 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       115   0.00091  102 3  11 22  0.41    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.88u 0.15s 10.03t   Elapsed:  00:00:00
  Total cpu time:  9.88u 0.15s 10.03t   Elapsed:  00:00:00
  Start:  Fri May 10 08:10:24 2013   End:  Fri May 10 08:10:24 2013

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