BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037980
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FBT|A Chain A, Wrn Exonuclease
 pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
 pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
 pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
 pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
          Length = 205

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 40  LVGIDVK----FNHRCTKKAEMLILCAG-NRCLIIQLCHLGQIPESLKKFLADETICFAG 94
           +VG D++    +N     K  ++ LC   ++C +  +  +   P+ LK  L ++ +  AG
Sbjct: 47  VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAG 106

Query: 95  MEMNGKVDGLGR-CNLRCKTAVELGHLAAR 123
           + + G    L R  +++ K  VEL  +A +
Sbjct: 107 VGIEGDQWKLLRDFDIKLKNFVELTDVANK 136


>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
           Cryptosporidium Parvum, Cgd7_40
          Length = 345

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 66  CLIIQLCHLGQIPESLKKFLADET 89
           CL+++LCH G + + L  F+ D T
Sbjct: 104 CLVMELCHGGHLLDKLNVFIDDST 127


>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
 pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
 pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
 pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
          Length = 463

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 241 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 300

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 301 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330


>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
           S108a Mutant From P. Aeruginosa
          Length = 463

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 241 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 300

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 301 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330


>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
          Length = 463

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 241 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 300

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 301 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330


>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
           ITS SUBSTRATE
 pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
          Length = 463

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 241 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 300

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 301 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330


>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
 pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
          Length = 463

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 241 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 300

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 301 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330


>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
           AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
          Length = 462

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 240 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 299

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 300 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 329


>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
           Bound
          Length = 462

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 6   LDIQGNNVKVTVVDHAALIDDNIXXXXXXXXRQRLVGIDVKFNHRCTKKAEMLILCAGNR 65
            D  G+ V V       +  D +          R  G D+ F+ +CT++   LI   G R
Sbjct: 240 FDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGR 299

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKV 101
            ++ +  H      SL K    ET      EM+G V
Sbjct: 300 PVMWKTGH------SLIKKKMKETGALLAGEMSGHV 329


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,183,784
Number of Sequences: 62578
Number of extensions: 101949
Number of successful extensions: 170
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)