BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037980
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 11 NNVKVTVVDHAALIDD----NIAALKALLKRQRLVGIDVK-FNHRCTKKAEMLILCAGNR 65
NN+ + V ++D+ NI LK Q ++G+D + ++K ++ L
Sbjct: 108 NNLDIIVTSDFQIVDNWIENNIYDLK-----QEIIGLDTETLISGKSEKISIIQLSTSKH 162
Query: 66 CLIIQLCHLGQIPESLKKFLADETICFAGMEMN 98
+IIQ+ + +P++L K DE+I G+ ++
Sbjct: 163 NIIIQVNQMNTLPQNLNKVFFDESIIKVGVAID 195
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 40 LVGIDVKFNHRCTK-----KAEMLILCA-GNRCLIIQLCHLGQIPESLKKFLADETICFA 93
VG+D+++ K K + +C N C ++ + H G IP+SL+ + D T+
Sbjct: 129 FVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKV 187
Query: 94 GMEMNG 99
G+ ++G
Sbjct: 188 GIGIDG 193
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 31 LKALLKRQRLVGIDVKFNHRCTK----KAEMLILCAG-NRCLIIQLCHLGQIPESLKKFL 85
+++ L + ++G D+++ TK K ++ +C +C + + + P+ LK+ L
Sbjct: 63 IRSSLLEEDVLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLL 122
Query: 86 ADETICFAGMEMNG-KVDGLGRCNLRCKTAVELGHLA 121
DE++ G+ + G + + L+ K +EL +A
Sbjct: 123 EDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMA 159
>sp|Q9J5U7|RDRP_CARMS Probable RNA-directed RNA polymerase OS=Carnation mottle virus
(isolate China/Shanghai) GN=ORF1 PE=4 SV=1
Length = 763
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 23 LIDDNIAALKALLKRQRLVGIDVKFNHRCTKKAEMLILCAGNRCLIIQ 70
L+ +A A L + +G+ V+FN C + A I+ +G RCLI+Q
Sbjct: 16 LVGGLVAVGSAALAVRATIGV-VEFNRECVRGARR-IVSSGGRCLIVQ 61
>sp|O53113|Y409_METJA Uncharacterized protein MJ0409 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0409 PE=4 SV=1
Length = 703
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 2 GKYELDIQGNNVKVTVVDHAALIDDNIAALKALLKRQRLVGIDVKF 47
G Y +D+ G +KV V+D +I++ + +KAL + +GI+V +
Sbjct: 318 GSYAIDVAGRKIKVDVLDD-EIINNKLKCIKAL----KALGINVSY 358
>sp|Q8TDM0|BCAS4_HUMAN Breast carcinoma-amplified sequence 4 OS=Homo sapiens GN=BCAS4 PE=2
SV=1
Length = 211
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 19 DHAALIDDNIAALKALLKRQRLVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHL---- 74
D + ++++NI LKA L R GI K + + E + G+ ++ L
Sbjct: 88 DTSQILEENIPVLKAKLTEMR--GIYAKVD-----RLEAFVKMVGHHVAFLEADVLQAER 140
Query: 75 --GQIPESLKKFLADETI-CFAGMEMNGKVDGLGRCNLR 110
G P++L+++L + F +E +G + RCNLR
Sbjct: 141 DHGAFPQALRRWLGSAGLPSFRNVECSGTIP--ARCNLR 177
>sp|A2CI35|DUSTY_STRPU Dual serine/threonine and tyrosine protein kinase
OS=Strongylocentrotus purpuratus GN=DSTYK PE=2 SV=1
Length = 953
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 50 RCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNL 109
RCT++ + L+L N C++ +L +G + + FL C A +E K+DG +L
Sbjct: 471 RCTEQIQDLVLARLNACVVEKL--IGSVELLRESFLGTLQRCLASLE---KIDG----DL 521
Query: 110 RCKTAVEL 117
T V L
Sbjct: 522 ETSTTVAL 529
>sp|P04518|RDRP_CARMV RNA-directed RNA polymerase OS=Carnation mottle virus GN=ORF1
PE=4 SV=2
Length = 763
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 23 LIDDNIAALKALLKRQRLVGIDVKFNHRCTKKAEMLILCAGNRCLIIQ 70
L+ +A A L + +G+ V+FN C + A I+ +G RCL++Q
Sbjct: 16 LVGGLVAVGSAALAVRATIGV-VEFNRECVRGARR-IVSSGGRCLVVQ 61
>sp|P23531|PTLCB_LACLL PTS system lactose-specific EIICB component OS=Lactococcus lactis
subsp. lactis GN=lacE PE=2 SV=1
Length = 568
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 27 NIAALKALLKRQRLVGIDVKFNHRCTKKAEMLILCAG 63
N A A+L + + DV N+ TK+ +L+LCAG
Sbjct: 439 NTAKADAVLGKADVAKEDVAANNNITKETNVLVLCAG 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,785,620
Number of Sequences: 539616
Number of extensions: 1532783
Number of successful extensions: 4107
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4105
Number of HSP's gapped (non-prelim): 11
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)