Query 037980
Match_columns 123
No_of_seqs 118 out of 470
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 10:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 99.9 2.6E-24 8.9E-29 162.5 10.6 96 23-122 33-142 (206)
2 2e6m_A Werner syndrome ATP-dep 99.8 9.9E-19 3.4E-23 129.8 11.2 114 6-122 11-130 (208)
3 3saf_A Exosome component 10; e 99.5 5.9E-14 2E-18 115.7 10.4 102 16-121 111-215 (428)
4 2hbj_A Exosome complex exonucl 99.5 3E-13 1E-17 110.6 11.0 99 19-121 91-192 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.4 1.5E-12 5E-17 104.8 10.6 98 19-121 7-107 (375)
6 3cym_A Uncharacterized protein 98.8 1.3E-08 4.4E-13 83.9 8.6 96 19-119 22-123 (440)
7 2kfn_A Klenow fragment of DNA 98.3 2E-06 6.9E-11 73.0 9.6 99 19-121 11-123 (605)
8 3pv8_A DNA polymerase I; DNA p 97.3 0.00063 2.2E-08 57.9 7.3 79 39-118 30-111 (592)
9 1x9m_A DNA polymerase; DNA plo 96.9 0.0012 4.1E-08 56.9 5.4 81 40-121 1-95 (698)
10 4dfk_A DNA polymerase I, therm 93.3 0.021 7.2E-07 48.1 0.9 72 38-119 10-83 (540)
11 3v9w_A Ribonuclease T; DEDD nu 72.0 9.7 0.00033 27.5 6.0 35 88-122 133-176 (235)
12 3rcp_A Pleckstrin homology dom 71.5 9 0.00031 23.5 5.1 32 3-34 60-91 (103)
13 1bgx_T TAQ DNA polymerase; DNA 71.2 1.3 4.4E-05 39.1 1.2 68 39-118 305-374 (832)
14 2cof_A Protein KIAA1914; PH do 70.9 9.1 0.00031 23.9 5.1 32 4-35 69-100 (107)
15 2p1j_A POLIII, DNA polymerase 70.7 21 0.00071 24.8 7.4 84 37-122 11-131 (186)
16 1twf_K B13.6, DNA-directed RNA 67.7 8.2 0.00028 26.1 4.5 47 52-98 16-64 (120)
17 1wgq_A FYVE, rhogef and PH dom 66.1 13 0.00045 23.0 5.1 32 4-35 71-102 (109)
18 1pls_A Pleckstrin homology dom 63.1 18 0.00063 22.4 5.3 31 4-34 69-99 (113)
19 2d9v_A Pleckstrin homology dom 62.0 15 0.00052 23.9 4.9 32 4-35 82-113 (130)
20 1xpp_A TA1416, DNA-directed RN 61.8 16 0.00055 24.5 5.0 46 53-98 9-56 (115)
21 3cxb_B Pleckstrin homology dom 61.8 12 0.00042 23.8 4.4 32 4-35 69-100 (112)
22 2d9y_A Pleckstrin homology dom 57.8 18 0.00061 22.5 4.5 31 4-34 77-107 (117)
23 1u5d_A SKAP55, SRC kinase-asso 56.7 16 0.00054 22.2 4.1 30 4-33 73-102 (108)
24 1wg7_A Dedicator of cytokinesi 56.1 19 0.00065 23.7 4.6 31 4-34 92-122 (150)
25 1wjm_A Beta-spectrin III; PH d 51.5 26 0.0009 22.2 4.6 31 4-34 85-115 (123)
26 2pa8_L DNA-directed RNA polyme 50.5 16 0.00053 23.4 3.3 35 64-98 10-46 (92)
27 2dkp_A Pleckstrin homology dom 50.4 22 0.00074 22.5 4.1 31 4-34 87-117 (128)
28 2coc_A FYVE, rhogef and PH dom 50.0 34 0.0012 22.1 5.1 31 4-35 75-105 (112)
29 1x1g_A Pleckstrin 2; PH domain 49.1 17 0.00057 23.2 3.3 31 4-34 92-122 (129)
30 1u5f_A SRC-associated adaptor 48.3 30 0.001 22.7 4.7 32 4-35 87-118 (148)
31 2w2x_D 1-phosphatidylinositol- 48.0 23 0.0008 22.9 4.0 31 4-34 85-117 (124)
32 1x05_A Pleckstrin; PH domain, 47.9 19 0.00064 23.0 3.5 32 4-35 88-119 (129)
33 2p0d_A RHO GTPase-activating p 46.4 33 0.0011 22.3 4.6 30 4-33 92-121 (129)
34 2d9x_A Oxysterol binding prote 44.4 18 0.00062 22.9 3.0 31 4-34 72-102 (120)
35 1unq_A RAC-alpha serine/threon 44.2 39 0.0013 21.3 4.6 24 11-34 85-108 (125)
36 1upq_A PEPP1; PH domain, phosp 43.9 32 0.0011 21.5 4.1 28 8-35 81-108 (123)
37 1v5u_A SBF1, SET binding facto 42.6 37 0.0013 20.9 4.2 30 4-34 80-109 (117)
38 2da0_A 130-kDa phosphatidylino 42.2 49 0.0017 20.6 4.8 30 4-34 70-99 (114)
39 3h0g_K DNA-directed RNA polyme 40.5 21 0.00073 24.2 2.9 45 54-98 17-63 (123)
40 1v89_A Hypothetical protein KI 40.4 44 0.0015 20.4 4.3 26 10-35 86-111 (118)
41 1v5p_A Pleckstrin homology dom 40.0 48 0.0016 21.7 4.6 26 9-34 93-118 (126)
42 2dn6_A KIAA0640 protein; PH do 39.5 59 0.002 19.8 4.8 30 4-34 72-101 (115)
43 1wi1_A Calcium-dependent activ 39.1 55 0.0019 22.1 4.8 28 7-35 82-109 (126)
44 2cod_A Centaurin-delta 1; ARF 38.4 39 0.0013 21.0 3.8 30 4-34 68-97 (115)
45 2dhk_A TBC1 domain family memb 35.5 48 0.0017 20.9 4.0 30 4-34 73-102 (119)
46 2lul_A Tyrosine-protein kinase 34.1 69 0.0024 21.7 4.8 25 11-35 96-120 (164)
47 2kpo_A Rossmann 2X2 fold prote 33.9 44 0.0015 21.5 3.4 21 13-33 78-98 (110)
48 1btk_A Bruton'S tyrosine kinas 33.6 69 0.0023 22.0 4.8 31 4-35 101-131 (169)
49 2j59_M RHO-GTPase activating p 33.5 64 0.0022 21.5 4.5 30 4-34 80-109 (168)
50 1eaz_A Tandem PH domain contai 33.0 80 0.0027 19.5 4.7 30 4-34 80-109 (125)
51 2qxf_A Exodeoxyribonuclease I; 30.0 2.3E+02 0.0077 23.1 9.0 85 37-121 8-141 (482)
52 1wlj_A Interferon stimulated g 29.3 1.4E+02 0.0047 20.5 8.3 79 37-120 4-113 (189)
53 1fao_A Dual adaptor of phospho 27.6 1.1E+02 0.0039 18.9 5.1 30 4-34 81-110 (126)
54 3a8p_A T-lymphoma invasion and 27.5 82 0.0028 23.4 4.5 31 4-34 92-122 (263)
55 1fgy_A GRP1; PH domain, signal 27.1 99 0.0034 19.1 4.4 23 12-34 96-118 (127)
56 2od5_A Hypothetical protein; m 27.1 55 0.0019 21.6 3.0 25 75-99 45-70 (116)
57 2ab1_A Hypothetical protein; H 26.8 1.2E+02 0.0042 20.0 4.9 24 78-101 51-75 (122)
58 1v5m_A SH2 and PH domain-conta 26.5 45 0.0016 23.1 2.7 32 2-33 96-127 (136)
59 2rsg_A Collagen type IV alpha- 25.9 37 0.0013 20.3 2.0 29 4-33 63-91 (94)
60 1dyn_A Dynamin; signal transdu 23.2 1.1E+02 0.0036 20.8 4.0 23 12-34 93-115 (125)
61 1x1f_A Signal-transducing adap 22.7 1.2E+02 0.004 20.5 4.3 30 4-34 82-111 (149)
62 2igi_A Oligoribonuclease; RNAs 21.9 84 0.0029 21.2 3.4 27 80-106 87-117 (180)
63 1mai_A Phospholipase C delta-1 21.6 1.4E+02 0.0047 19.5 4.4 31 4-34 88-119 (131)
64 3tfm_A Myosin X; split PH doma 20.5 1.4E+02 0.0049 21.2 4.6 31 4-35 124-154 (228)
65 1rbl_M Ribulose 1,5 bisphospha 20.1 85 0.0029 20.8 2.9 27 19-45 65-93 (109)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.91 E-value=2.6e-24 Score=162.49 Aligned_cols=96 Identities=23% Similarity=0.338 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEEeeecCC---------C-CCceEEEeeeCCeeEEEEccccCCChHH---HHHhhcCCC
Q 037980 23 LIDDNIAALKALLKRQRLVGIDVKFNHRC---------T-KKAEMLILCAGNRCLIIQLCHLGQIPES---LKKFLADET 89 (123)
Q Consensus 23 ~v~~wi~~~~~~~~~~~vvG~D~Ew~p~~---------~-~~vallQl~~~~~cll~~l~~~~~~p~~---L~~~L~d~~ 89 (123)
.++++++..+. .+..+||||+||+|+. + +++++||||++++|+|||+ ++.+|+. |++||+||+
T Consensus 33 ~~~~~~~~~~~--~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l--~~~~~~~L~~L~~lL~d~~ 108 (206)
T 1vk0_A 33 YLSLIREDSIL--NGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL--PKPFHDNLKDLYRFFASKF 108 (206)
T ss_dssp HHHHHHHHHHH--HSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC--CSSCCGGGHHHHHHHTCSS
T ss_pred HHHHHHHhhhh--cCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEec--cccCCccHHHHHHHhcCCC
Confidence 34444443332 4678999999999841 1 5899999999999999999 4678988 779999999
Q ss_pred ceEEeeeechhhhhhcc-CCCccCceeecHhhhh
Q 037980 90 ICFAGMEMNGKVDGLGR-CNLRCKTAVELGHLAA 122 (123)
Q Consensus 90 i~kvGv~i~~D~~kL~~-~gl~~~~~vDL~~la~ 122 (123)
|+|||+++++|+++|++ ||+.+++++|++.+|+
T Consensus 109 i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~ 142 (206)
T 1vk0_A 109 VTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAA 142 (206)
T ss_dssp SEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHH
T ss_pred ceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHH
Confidence 99999999999999999 9999999999998874
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.78 E-value=9.9e-19 Score=129.83 Aligned_cols=114 Identities=21% Similarity=0.361 Sum_probs=94.5
Q ss_pred EEecCCEEEEEEeCChHHHHHHHHHHHhhhcCCcEEEEEEeeecC----CCCCceEEEeeeC-CeeEEEEccccCCChHH
Q 037980 6 LDIQGNNVKVTVVDHAALIDDNIAALKALLKRQRLVGIDVKFNHR----CTKKAEMLILCAG-NRCLIIQLCHLGQIPES 80 (123)
Q Consensus 6 v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~----~~~~vallQl~~~-~~cll~~l~~~~~~p~~ 80 (123)
+.|.|.. .+.+++++++...+++........++|||+||.+. ...+++++|+|++ +.|+++++.+++.+|+.
T Consensus 11 ~~f~g~i---~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~ 87 (208)
T 2e6m_A 11 LEFPGSI---VYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQG 87 (208)
T ss_dssp CCCCSEE---EEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHH
T ss_pred cccCCcE---EEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchHH
Confidence 3467764 44577888876555554433456899999999985 2678999999985 68999999988779999
Q ss_pred HHHhhcCCCceEEeeeechhhhhhcc-CCCccCceeecHhhhh
Q 037980 81 LKKFLADETICFAGMEMNGKVDGLGR-CNLRCKTAVELGHLAA 122 (123)
Q Consensus 81 L~~~L~d~~i~kvGv~i~~D~~kL~~-~gl~~~~~vDL~~la~ 122 (123)
|+.+|+||++.|+|++++.|.+.|.+ ||+.+++.+||..+|+
T Consensus 88 L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAa 130 (208)
T 2e6m_A 88 LKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVAN 130 (208)
T ss_dssp HHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHH
T ss_pred HHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHH
Confidence 99999999999999999999999999 9999999999888874
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.51 E-value=5.9e-14 Score=115.74 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=89.0
Q ss_pred EEeCChHHHHHHHHHHHhhhcCCcEEEEEEeeecC--CCCCceEEEeeeCCeeEEEEccccCCChHHHHHhhcCCCceEE
Q 037980 16 TVVDHAALIDDNIAALKALLKRQRLVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFA 93 (123)
Q Consensus 16 tvt~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~--~~~~vallQl~~~~~cll~~l~~~~~~p~~L~~~L~d~~i~kv 93 (123)
.+.++++.+++|+..+.. ..++|||+||.+. ...++++||||+++.+++|.....+.....|+.+|+||++.||
T Consensus 111 ~~I~t~e~L~~~l~~L~~----~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~lL~dp~i~KV 186 (428)
T 3saf_A 111 HFISSLDELVELNEKLLN----CQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKV 186 (428)
T ss_dssp EEECSHHHHHHHHHHHTT----CSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHHHHTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHhc----CCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHHHHcCCCceEE
Confidence 456789999999988763 6799999999875 4678999999999999999987664355789999999999999
Q ss_pred eeeechhhhhhcc-CCCccCceeecHhhh
Q 037980 94 GMEMNGKVDGLGR-CNLRCKTAVELGHLA 121 (123)
Q Consensus 94 Gv~i~~D~~kL~~-~gl~~~~~vDL~~la 121 (123)
|.+++.|...|.+ +|+.+.+.+|++-.|
T Consensus 187 ~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa 215 (428)
T 3saf_A 187 FHGADSDIEWLQKDFGLYVVNMFDTHQAA 215 (428)
T ss_dssp ESSCHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred EeehHHHHHHHHHHcCCCcCceeechhHH
Confidence 9999999999987 999999999987544
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.47 E-value=3e-13 Score=110.62 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=84.8
Q ss_pred CChHHHHHHHHHHHhhhcCCcEEEEEEeeecC--CCCCceEEEeeeCCeeEEEEccccCCChHHHHHhhcCCCceEEeee
Q 037980 19 DHAALIDDNIAALKALLKRQRLVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGME 96 (123)
Q Consensus 19 ~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~--~~~~vallQl~~~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~ 96 (123)
++.+.+++|+..+. ...++|||+||.+. ...++++||||+++.|+|++...+...++.|+.+|+||+|.|||++
T Consensus 91 ~t~~~L~~~~~~L~----~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~KV~h~ 166 (410)
T 2hbj_A 91 DTSTELESMLEDLK----NTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHG 166 (410)
T ss_dssp CSHHHHHHHHHHHT----TCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSEEEESS
T ss_pred CCHHHHHHHHHHHh----hCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCceEEEEe
Confidence 45788889988654 35799999999886 2678999999999999999965444456789999999999999999
Q ss_pred echhhhhhcc-CCCccCceeecHhhh
Q 037980 97 MNGKVDGLGR-CNLRCKTAVELGHLA 121 (123)
Q Consensus 97 i~~D~~kL~~-~gl~~~~~vDL~~la 121 (123)
++.|...|.+ +|+.+.+.+|++-.|
T Consensus 167 ~k~Dl~~L~~~~Gi~~~~~fDt~lAa 192 (410)
T 2hbj_A 167 AFMDIIWLQRDLGLYVVGLFDTYHAS 192 (410)
T ss_dssp CHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred hHHHHHHHHHHcCCCcCCEEEcHHHH
Confidence 9999999999 999999999998654
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.40 E-value=1.5e-12 Score=104.83 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHhhhcCCcEEEEEEeeecCC--CCCceEEEeeeCCeeEEEEccccCCChHHHHHhhcCCCceEEeee
Q 037980 19 DHAALIDDNIAALKALLKRQRLVGIDVKFNHRC--TKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGME 96 (123)
Q Consensus 19 ~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~~--~~~vallQl~~~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~ 96 (123)
++.+.+++|+..+. ...++|||+||.+.. ..++++||+|+++.|++++...++ .++.|+.+|+||++.|+|++
T Consensus 7 ~t~~~l~~~~~~l~----~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv~h~ 81 (375)
T 1yt3_A 7 TTDDALASLCEAVR----AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLHA 81 (375)
T ss_dssp CSHHHHHHHHHHHT----TSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEESS
T ss_pred CCHHHHHHHHHHHc----CCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceEEEee
Confidence 45788889988654 358999999999872 568999999999999999965443 45789999999999999999
Q ss_pred echhhhhhcc-CCCccCceeecHhhh
Q 037980 97 MNGKVDGLGR-CNLRCKTAVELGHLA 121 (123)
Q Consensus 97 i~~D~~kL~~-~gl~~~~~vDL~~la 121 (123)
++.|...|.+ +|+.+.+.+|++-.|
T Consensus 82 ~k~Dl~~L~~~~Gi~~~~~fDt~lAa 107 (375)
T 1yt3_A 82 GSEDLEVFLNVFGELPQPLIDTQILA 107 (375)
T ss_dssp CHHHHHHHHHHHSSCCSSEEEHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEcHHHH
Confidence 9999999999 999999999987654
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.81 E-value=1.3e-08 Score=83.90 Aligned_cols=96 Identities=7% Similarity=0.049 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHhhhcCCcEEEEEEeeecC--CCCCceEEEeeeCC-eeEEEEccccC---CChHHHHHhhcCCCceE
Q 037980 19 DHAALIDDNIAALKALLKRQRLVGIDVKFNHR--CTKKAEMLILCAGN-RCLIIQLCHLG---QIPESLKKFLADETICF 92 (123)
Q Consensus 19 ~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~--~~~~vallQl~~~~-~cll~~l~~~~---~~p~~L~~~L~d~~i~k 92 (123)
++.+.+++|+..+.. ...++|||+||.+. ...++++||||+++ .|+++...... .-.+.|+.+|+|+ .|
T Consensus 22 ~t~e~L~~~~~~L~~---~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~--~K 96 (440)
T 3cym_A 22 DTLPAFRDYCSELAS---SHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA--VW 96 (440)
T ss_dssp CSHHHHHHHHHHHHS---CEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC--EE
T ss_pred CCHHHHHHHHHHHHh---cCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC--CE
Confidence 457889999987642 22789999999875 26789999999855 58888663211 1256899999998 69
Q ss_pred EeeeechhhhhhccCCCccCceeecHh
Q 037980 93 AGMEMNGKVDGLGRCNLRCKTAVELGH 119 (123)
Q Consensus 93 vGv~i~~D~~kL~~~gl~~~~~vDL~~ 119 (123)
+|.+++.|...|..+|+.+.+.+|...
T Consensus 97 V~h~~k~Dl~~L~~~gi~~~~~fDt~l 123 (440)
T 3cym_A 97 ILHDSLQDLPGFDELGMEPQRLFDTEI 123 (440)
T ss_dssp EESSHHHHHHHHHHHTCCCCEEEEHHH
T ss_pred EEEcCHHHHHHHHHcCCcCCceehHHH
Confidence 999999999988559999999999853
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.34 E-value=2e-06 Score=73.05 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHhhhcCCcEEEEEEeeecCC--CCCceEEEeee-CCeeEEEEcccc-----CCC-----hHHHHHhh
Q 037980 19 DHAALIDDNIAALKALLKRQRLVGIDVKFNHRC--TKKAEMLILCA-GNRCLIIQLCHL-----GQI-----PESLKKFL 85 (123)
Q Consensus 19 ~~~~~v~~wi~~~~~~~~~~~vvG~D~Ew~p~~--~~~vallQl~~-~~~cll~~l~~~-----~~~-----p~~L~~~L 85 (123)
++++.+++|+..+.. ...++||+|+.... ..++..+|+|. .+.++.+.+.+. +.+ .+.|+.||
T Consensus 11 ~~~~~l~~~~~~l~~----~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~~L 86 (605)
T 2kfn_A 11 LDEETLKAWIAKLEK----APVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLL 86 (605)
T ss_dssp CSHHHHHHHHHHHHT----SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhccc----CCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHHHH
Confidence 347899999987542 47799999998762 46788888996 555555555441 122 24799999
Q ss_pred cCCCceEEeeeechhhhhhccCCCccCc-eeecHhhh
Q 037980 86 ADETICFAGMEMNGKVDGLGRCNLRCKT-AVELGHLA 121 (123)
Q Consensus 86 ~d~~i~kvGv~i~~D~~kL~~~gl~~~~-~vDL~~la 121 (123)
+|+++.|||.+.+.|..-|.++|+.+.+ .+|..-.|
T Consensus 87 ~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laa 123 (605)
T 2kfn_A 87 EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLES 123 (605)
T ss_dssp TCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHH
T ss_pred cCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHH
Confidence 9999999999999999999889999887 68865443
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.26 E-value=0.00063 Score=57.94 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=63.7
Q ss_pred cEEEEEEeeecC--CCCCceEEEeeeCCeeEEEEccccCCChHHHHHhhcCCCceEEeeeechhhhhhccCCCccCc-ee
Q 037980 39 RLVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKT-AV 115 (123)
Q Consensus 39 ~vvG~D~Ew~p~--~~~~vallQl~~~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~i~~D~~kL~~~gl~~~~-~v 115 (123)
.-..+|+|.... ...+...+|+|.++.++.+.+.+.. .-+.|+.+|+||++.|+|.+++.|..-|.++|+.+.+ .+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~~~-~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~~f 108 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETAL-ADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSF 108 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHHT-TCHHHHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCEEE
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccchhh-HHHHHHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCccc
Confidence 356899997754 4567788999999988888776532 4567999999999999999999999998779999875 55
Q ss_pred ecH
Q 037980 116 ELG 118 (123)
Q Consensus 116 DL~ 118 (123)
|..
T Consensus 109 DTm 111 (592)
T 3pv8_A 109 DLL 111 (592)
T ss_dssp EHH
T ss_pred hHH
Confidence 754
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=96.87 E-value=0.0012 Score=56.94 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=62.5
Q ss_pred EEEEEEeeecC--CCCCceEEEeee--CCeeEEEEccccCCChHHHHHhhcCCCceEEeeee-chhhhhhcc-C------
Q 037980 40 LVGIDVKFNHR--CTKKAEMLILCA--GNRCLIIQLCHLGQIPESLKKFLADETICFAGMEM-NGKVDGLGR-C------ 107 (123)
Q Consensus 40 vvG~D~Ew~p~--~~~~vallQl~~--~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~i-~~D~~kL~~-~------ 107 (123)
+|.||+|..-- ...++.++|++. .+..+++.....+...+.|+.||+ +++.|||.+. +-|..-|.+ +
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccC
Confidence 47899998744 456999999998 447777764432223478999999 9999999998 999999988 4
Q ss_pred CCccC--ceeecHhhh
Q 037980 108 NLRCK--TAVELGHLA 121 (123)
Q Consensus 108 gl~~~--~~vDL~~la 121 (123)
|+.+. ..+|..-.|
T Consensus 80 Gi~l~~~~~~DTmlaa 95 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLS 95 (698)
T ss_dssp CCCCCGGGEEEHHHHH
T ss_pred CccCCCCcchhHHHHH
Confidence 98776 477866544
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=93.30 E-value=0.021 Score=48.07 Aligned_cols=72 Identities=8% Similarity=-0.038 Sum_probs=55.8
Q ss_pred CcEEEEEEeeecC--CCCCceEEEeeeCCeeEEEEccccCCChHHHHHhhcCCCceEEeeeechhhhhhccCCCccCcee
Q 037980 38 QRLVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKTAV 115 (123)
Q Consensus 38 ~~vvG~D~Ew~p~--~~~~vallQl~~~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~i~~D~~kL~~~gl~~~~~v 115 (123)
|.-+.+|+|.... ...+...+|+|.++.++.++ ...+.|+.||+| +.|+|.+++.|.. ++|+.+...+
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~---~~Gi~~~~~f 79 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL---REGLGLPPGD 79 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH---HTTCCCCBCC
T ss_pred CCceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH---HcCCCCCcce
Confidence 4448999999765 45678889999988877554 345789999999 8999999999998 6677666666
Q ss_pred ecHh
Q 037980 116 ELGH 119 (123)
Q Consensus 116 DL~~ 119 (123)
|..-
T Consensus 80 DT~l 83 (540)
T 4dfk_A 80 DPML 83 (540)
T ss_dssp CHHH
T ss_pred eHHH
Confidence 7543
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=72.05 E-value=9.7 Score=27.50 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=26.6
Q ss_pred CCceEEeeeechhhhhhcc----CCCcc-----CceeecHhhhh
Q 037980 88 ETICFAGMEMNGKVDGLGR----CNLRC-----KTAVELGHLAA 122 (123)
Q Consensus 88 ~~i~kvGv~i~~D~~kL~~----~gl~~-----~~~vDL~~la~ 122 (123)
++..+||.+++-|..-|.+ +|+.. ...+|...+|+
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~ 176 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAG 176 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHH
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHH
Confidence 6789999999999988864 58753 25678776653
No 12
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=71.49 E-value=9 Score=23.55 Aligned_cols=32 Identities=25% Similarity=0.125 Sum_probs=26.5
Q ss_pred ceEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 3 KYELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 3 ~y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
.|.|...+.+.+...++++++.++|++.+...
T Consensus 60 ~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 60 RMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp EEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 36676777788888899999999999988754
No 13
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=71.19 E-value=1.3 Score=39.06 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=47.0
Q ss_pred cEEEEEEeeecCCCCCceE-EEeee-CCeeEEEEccccCCChHHHHHhhcCCCceEEeeeechhhhhhccCCCccCceee
Q 037980 39 RLVGIDVKFNHRCTKKAEM-LILCA-GNRCLIIQLCHLGQIPESLKKFLADETICFAGMEMNGKVDGLGRCNLRCKTAVE 116 (123)
Q Consensus 39 ~vvG~D~Ew~p~~~~~val-lQl~~-~~~cll~~l~~~~~~p~~L~~~L~d~~i~kvGv~i~~D~~kL~~~gl~~~~~vD 116 (123)
..++||+|... +....+ +++|. ++.++.+.+ + .+.|+.+|+||++ +.+.|..-|.++|++++...|
T Consensus 305 ~~va~d~et~~--~~~~~l~vg~a~~~g~a~yvp~-~----~~~Lk~lLed~~i-----n~K~d~~~L~~~Gi~~~~~~D 372 (832)
T 1bgx_T 305 AFVGFVLSRKE--PMWADLLALAAARGGRVHRAPE-P----YKALRDLKEARGL-----LAKDLSVLALREGLGLPPGDD 372 (832)
T ss_dssp CCBEEECSSSC--TTTCCCCEEECBSSSEEECCSC-H----HHHHHHCSSBCBT-----THHHHHHHHHHHTCCCCBCCC
T ss_pred ceEEEEEecCC--cccCceeEEEEEcCCCEEEEEC-C----HHHHHHHHhCCCC-----ChHHHHHHHHHcCCccCcccC
Confidence 45888888544 112334 66886 445555544 2 1579999999998 899999888779998884456
Q ss_pred cH
Q 037980 117 LG 118 (123)
Q Consensus 117 L~ 118 (123)
..
T Consensus 373 t~ 374 (832)
T 1bgx_T 373 PM 374 (832)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=70.93 E-value=9.1 Score=23.92 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=26.2
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+.+.+...+++.++.++|++.+....
T Consensus 69 F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 69 FRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp EEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 56666767878888999999999999987653
No 15
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=70.69 E-value=21 Score=24.81 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=49.3
Q ss_pred CCcEEEEEEeeecCCCCCceEEEeee----CCeeE-EEE-ccccC-CCh------------------------HHHHHhh
Q 037980 37 RQRLVGIDVKFNHRCTKKAEMLILCA----GNRCL-IIQ-LCHLG-QIP------------------------ESLKKFL 85 (123)
Q Consensus 37 ~~~vvG~D~Ew~p~~~~~vallQl~~----~~~cl-l~~-l~~~~-~~p------------------------~~L~~~L 85 (123)
...++.||+|+.--.+..-.++|++. ..... -|+ +.+++ .+| +.|.+|+
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l 90 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFL 90 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHHH
Confidence 45799999999743334456888873 22321 122 22211 122 2455666
Q ss_pred cCCCceEEeeeechhhhhhcc----CCCc--cCceeecHhhhh
Q 037980 86 ADETICFAGMEMNGKVDGLGR----CNLR--CKTAVELGHLAA 122 (123)
Q Consensus 86 ~d~~i~kvGv~i~~D~~kL~~----~gl~--~~~~vDL~~la~ 122 (123)
.+ -..||.++.-|..-|.+ +|+. ....+|...+++
T Consensus 91 ~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~ 131 (186)
T 2p1j_A 91 ED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAK 131 (186)
T ss_dssp SS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH
T ss_pred CC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHH
Confidence 64 47899999999988874 4554 246788766653
No 16
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=67.72 E-value=8.2 Score=26.11 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCCceEEEeeeCCeeEEEEccccC-CChHHHHHh-hcCCCceEEeeeec
Q 037980 52 TKKAEMLILCAGNRCLIIQLCHLG-QIPESLKKF-LADETICFAGMEMN 98 (123)
Q Consensus 52 ~~~vallQl~~~~~cll~~l~~~~-~~p~~L~~~-L~d~~i~kvGv~i~ 98 (123)
..|+.+.-......|..|.+..-+ .+.-.|+.. +.||++.|+|+.+.
T Consensus 16 e~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vp 64 (120)
T 1twf_K 16 ESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVE 64 (120)
T ss_dssp CCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecC
Confidence 456666666666678888887654 366788755 59999999999884
No 17
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=66.10 E-value=13 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=25.5
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+.+.+...++++++.++|+..+....
T Consensus 71 F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 71 FQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 55655666777888999999999999887653
No 18
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=63.05 E-value=18 Score=22.44 Aligned_cols=31 Identities=3% Similarity=0.015 Sum_probs=25.0
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++|+..+...
T Consensus 69 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~ 99 (113)
T 1pls_A 69 FKITTTKQQDHFFQAAFLEERDAWVRDINKA 99 (113)
T ss_dssp EEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 5566666677778899999999999988754
No 19
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.00 E-value=15 Score=23.89 Aligned_cols=32 Identities=6% Similarity=-0.104 Sum_probs=24.3
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+.+.+...++++++.++||+.+....
T Consensus 82 F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 82 LTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp EEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 56666444556678999999999999988653
No 20
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=61.80 E-value=16 Score=24.50 Aligned_cols=46 Identities=9% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCceEEEeeeCCeeEEEEccccC-CChHHHHHh-hcCCCceEEeeeec
Q 037980 53 KKAEMLILCAGNRCLIIQLCHLG-QIPESLKKF-LADETICFAGMEMN 98 (123)
Q Consensus 53 ~~vallQl~~~~~cll~~l~~~~-~~p~~L~~~-L~d~~i~kvGv~i~ 98 (123)
+++.+=-+...+.|..|.+..-+ .+.-.|+.. +.||++.|+|+.+.
T Consensus 9 ~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vp 56 (115)
T 1xpp_A 9 AESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIK 56 (115)
T ss_dssp CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred cceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecC
Confidence 34444445555678888887654 366788755 59999999999984
No 21
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=61.78 E-value=12 Score=23.84 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=24.5
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+...+.--++|++++++||+.+....
T Consensus 69 F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~ 100 (112)
T 3cxb_B 69 FQVILSDRPCLELSAESEAEMAEWMQHLCQAV 100 (112)
T ss_dssp EEEEETTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55555555566678899999999999987654
No 22
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.80 E-value=18 Score=22.49 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=24.2
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++|+..+...
T Consensus 77 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 77 FKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 4454456677777899999999999998764
No 23
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=56.68 E-value=16 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=22.8
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKA 33 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~ 33 (123)
|.|...+.+.+...++++++.++|+..+..
T Consensus 73 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~ 102 (108)
T 1u5d_A 73 FELTSQDRRTYEFTATSPAEARDWVDQISF 102 (108)
T ss_dssp EEEECSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEECCCHHHHHHHHHHHHH
Confidence 455555546666778999999999988765
No 24
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=56.09 E-value=19 Score=23.73 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=24.8
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...+++.++.++|+..+...
T Consensus 92 F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~a 122 (150)
T 1wg7_A 92 FELKMQDKSSYLLAADSEVEMEEWITILNKI 122 (150)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 5666666677778899999999999888654
No 25
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=51.46 E-value=26 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=23.1
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+..-++++++.++||..+...
T Consensus 85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~ 115 (123)
T 1wjm_A 85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA 115 (123)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 4555455456667789999999999988753
No 26
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=50.48 E-value=16 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=25.4
Q ss_pred CeeEEEEccccC-CChHHHHHh-hcCCCceEEeeeec
Q 037980 64 NRCLIIQLCHLG-QIPESLKKF-LADETICFAGMEMN 98 (123)
Q Consensus 64 ~~cll~~l~~~~-~~p~~L~~~-L~d~~i~kvGv~i~ 98 (123)
+.+..|.+..-+ .+.-.|+.. +.||++.|+|+.+.
T Consensus 10 ~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vp 46 (92)
T 2pa8_L 10 SNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQP 46 (92)
T ss_dssp TTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECS
T ss_pred CCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecC
Confidence 346677776544 366677754 59999999999984
No 27
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=50.35 E-value=22 Score=22.52 Aligned_cols=31 Identities=6% Similarity=-0.013 Sum_probs=23.3
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++|++.+...
T Consensus 87 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 117 (128)
T 2dkp_A 87 FKAAHPNMRTYYFCTDTGKEMELWMKAMLDA 117 (128)
T ss_dssp EEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4444455566677889999999999998754
No 28
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=49.99 E-value=34 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.3
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|. .+.+.+.--++|+++.++|++.+....
T Consensus 75 Fki~-~~~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 75 WKLQ-WAKQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp EEEE-ETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEe-cCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3444 556778888999999999999988753
No 29
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=49.12 E-value=17 Score=23.19 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=23.6
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++|+..+...
T Consensus 92 F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 122 (129)
T 1x1g_A 92 FKVITKDDTHYYIQASSKAERAEWIEAIKKL 122 (129)
T ss_dssp EEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4555555566667789999999999988765
No 30
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=48.26 E-value=30 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.0
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+.+.+...+++.++.++|++.+....
T Consensus 87 F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i 118 (148)
T 1u5f_A 87 FEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118 (148)
T ss_dssp EEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 55555665777778999999999999887653
No 31
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=48.02 E-value=23 Score=22.90 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=22.2
Q ss_pred eEEEecC--CEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQG--NNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g--~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+ .+.+...++++++.++||+.+...
T Consensus 85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a 117 (124)
T 2w2x_D 85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREI 117 (124)
T ss_dssp EEEEECC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4444433 345666789999999999998764
No 32
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=47.87 E-value=19 Score=22.96 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=23.7
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|...+.+.+...++++++.++|+..+....
T Consensus 88 F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 119 (129)
T 1x05_A 88 FEIITADEVHYFLQAATPKERTEWIKAIQMAS 119 (129)
T ss_dssp EEEECTTCCCCEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 45555555556667899999999999887653
No 33
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=46.41 E-value=33 Score=22.33 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=22.1
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKA 33 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~ 33 (123)
|.|.....+.+-.-++++++.++||+.+..
T Consensus 92 F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~ 121 (129)
T 2p0d_A 92 LHIRTIPGHEFLLQSDHETELRAWHRALRT 121 (129)
T ss_dssp EEEECTTSCEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 455545445555678999999999998864
No 34
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.42 E-value=18 Score=22.95 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=22.9
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++|++.+...
T Consensus 72 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 102 (120)
T 2d9x_A 72 FTVNAASGEQYKLRATDAKERQHWVSRLQIC 102 (120)
T ss_dssp EEECCSSSCCEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 4555554456666789999999999988754
No 35
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=44.20 E-value=39 Score=21.32 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=19.2
Q ss_pred CEEEEEEeCChHHHHHHHHHHHhh
Q 037980 11 NNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 11 ~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
.+.+...+++.++.++|+..+...
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~~~ 108 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQTV 108 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHH
Confidence 355566799999999999988754
No 36
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=43.90 E-value=32 Score=21.52 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=21.8
Q ss_pred ecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 8 IQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 8 ~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
..+.+.+...++++++.++|+..+....
T Consensus 81 ~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 108 (123)
T 1upq_A 81 HPGMRTYVLAADTLEDLRGWLRALGRAS 108 (123)
T ss_dssp CTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 3454666677999999999999887653
No 37
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=42.55 E-value=37 Score=20.92 Aligned_cols=30 Identities=3% Similarity=0.116 Sum_probs=22.1
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|... .+.+...++++++.++|+..+...
T Consensus 80 F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~ 109 (117)
T 1v5u_A 80 FDVKTT-RRVYNFCAQDVPSAQQWVDRIQSC 109 (117)
T ss_dssp EEEEES-SCEEEEECSSHHHHHHHHHHHHTT
T ss_pred EEEECC-CceEEEECCCHHHHHHHHHHHHHH
Confidence 555433 445556799999999999998754
No 38
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.20 E-value=49 Score=20.62 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=22.6
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|. .+.+.+...++++++.++|+..+...
T Consensus 70 F~I~-~~~r~~~l~a~s~~e~~~Wi~al~~~ 99 (114)
T 2da0_A 70 FDLI-SHNRTYHFQAEDEQDYVAWISVLTNS 99 (114)
T ss_dssp EEEE-ETTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEE-cCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 4444 34566777899999999999888654
No 39
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.48 E-value=21 Score=24.17 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=30.2
Q ss_pred CceEEEeeeCCeeEEEEccccC-CChHHHHHh-hcCCCceEEeeeec
Q 037980 54 KAEMLILCAGNRCLIIQLCHLG-QIPESLKKF-LADETICFAGMEMN 98 (123)
Q Consensus 54 ~vallQl~~~~~cll~~l~~~~-~~p~~L~~~-L~d~~i~kvGv~i~ 98 (123)
|+.+..-..-..|..|.+..-+ .+.-.|+.. +.||++.|+|+.+.
T Consensus 17 Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vp 63 (123)
T 3h0g_K 17 KVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63 (123)
T ss_dssp SCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCS
T ss_pred ceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCC
Confidence 4443333333457778777654 467778755 59999999999875
No 40
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=40.43 E-value=44 Score=20.44 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=20.6
Q ss_pred CCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 10 GNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 10 g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
+.+.+...++++++.++|+..+....
T Consensus 86 ~~~~~~l~a~s~~e~~~Wi~al~~~~ 111 (118)
T 1v89_A 86 GQDSYVLMASSQAEMEEWVKFLRRVA 111 (118)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 45566677899999999999887643
No 41
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=40.02 E-value=48 Score=21.70 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.1
Q ss_pred cCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 9 QGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 9 ~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
.+.+.+...++++++.++||+.+...
T Consensus 93 t~~r~y~l~A~s~~e~~~Wi~al~~a 118 (126)
T 1v5p_A 93 ALSQRYFLQANDQKDLKDWVEALNQA 118 (126)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHH
Confidence 56677888899999999999988754
No 42
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.45 E-value=59 Score=19.84 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=21.9
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+ +.+...++++++.++|+..+...
T Consensus 72 F~i~~~~-r~~~l~a~s~~e~~~Wi~ai~~~ 101 (115)
T 2dn6_A 72 FLVKCFD-KTFEISASDKKKKQEWIQAIHST 101 (115)
T ss_dssp EEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCC-CEEEEEcCCHHHHHHHHHHHHHH
Confidence 4554444 44556789999999999888754
No 43
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=39.06 E-value=55 Score=22.10 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=22.1
Q ss_pred EecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 7 DIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 7 ~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
.-.|.+ +...++++++.++||+.+.+..
T Consensus 82 v~~~~t-y~~~Adseee~~~WikAi~~A~ 109 (126)
T 1wi1_A 82 VKEGDT-VIFASDDEQDRILWVQAMYRAT 109 (126)
T ss_dssp ECSSCE-EEEECSSHHHHHHHHHHHHHHH
T ss_pred ecCCce-EEEEcCCHHHHHHHHHHHHHHh
Confidence 335555 6678999999999999998754
No 44
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=38.38 E-value=39 Score=20.96 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=22.0
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|. .+.+.+...+++.++.++|+..+...
T Consensus 68 F~i~-~~~r~~~l~a~s~~e~~~Wi~~l~~~ 97 (115)
T 2cod_A 68 FEVV-TTQRTFVFRVEKEEERNDWISILLNA 97 (115)
T ss_dssp EEEE-ESSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEE-eCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 4555 34455566789999999999988754
No 45
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.55 E-value=48 Score=20.89 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=22.2
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|... .+.+...++++++.++|+..+...
T Consensus 73 F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~ 102 (119)
T 2dhk_A 73 FEIKTP-SRVITLKAATKQAMLYWLQQLQMK 102 (119)
T ss_dssp EEEECS-SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeC-CcEEEEECCCHHHHHHHHHHHHHH
Confidence 444444 455667789999999999888754
No 46
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=34.13 E-value=69 Score=21.73 Aligned_cols=25 Identities=16% Similarity=0.019 Sum_probs=19.8
Q ss_pred CEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 11 NNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 11 ~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
.+.+...++|+++.++||+.+....
T Consensus 96 ~rt~~l~A~s~~e~~~Wi~aL~~~i 120 (164)
T 2lul_A 96 ANTLYIFAPSPQSRDLWVKKLKEEI 120 (164)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 3445567899999999999988654
No 47
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=33.90 E-value=44 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.0
Q ss_pred EEEEEeCChHHHHHHHHHHHh
Q 037980 13 VKVTVVDHAALIDDNIAALKA 33 (123)
Q Consensus 13 i~vtvt~~~~~v~~wi~~~~~ 33 (123)
+.+--..+|.++.+||+++..
T Consensus 78 vrtrkvtspdeakrwikefse 98 (110)
T 2kpo_A 78 VRTRKVTSPDEAKRWIKEFSE 98 (110)
T ss_dssp EEEEECSSHHHHHHHHHHHHH
T ss_pred eeeeecCChHHHHHHHHHHhh
Confidence 455566799999999999875
No 48
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=33.64 E-value=69 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=22.3
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|+|...++.. ...++++++.++||+.+....
T Consensus 101 F~I~t~~rt~-yl~A~s~~E~~eWi~aI~~~i 131 (169)
T 1btk_A 101 FQVVYDEGPL-YVFSPTEELRKRWIHQLKNVI 131 (169)
T ss_dssp EEEEETTCCE-EEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCceE-EEEcCCHHHHHHHHHHHHHHH
Confidence 4444455444 456899999999999988654
No 49
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=33.49 E-value=64 Score=21.54 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=22.9
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+ +.+...++++++.++||+.+...
T Consensus 80 F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~ 109 (168)
T 2j59_M 80 FRLTTSD-CECLFQAEDRDDMLAWIKTIQES 109 (168)
T ss_dssp EEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCC-ceEEEEcCCHHHHHHHHHHHHHH
Confidence 4555555 45667899999999999998764
No 50
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=32.97 E-value=80 Score=19.51 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=21.9
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|.. +.+.+...+++.++.++|+..+...
T Consensus 80 F~i~~-~~r~~~l~a~s~~e~~~W~~al~~~ 109 (125)
T 1eaz_A 80 FEIVT-TSRTFYVQADSPEEMHSWIKAVSGA 109 (125)
T ss_dssp EEEEC-SSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEe-CCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 44443 3455667789999999999988764
No 51
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=29.98 E-value=2.3e+02 Score=23.13 Aligned_cols=85 Identities=7% Similarity=0.018 Sum_probs=50.9
Q ss_pred CCcEEEEEEeeecCCCCCceEEEeee---C-C-------eeEEEEcccc---------------------CCC-h---HH
Q 037980 37 RQRLVGIDVKFNHRCTKKAEMLILCA---G-N-------RCLIIQLCHL---------------------GQI-P---ES 80 (123)
Q Consensus 37 ~~~vvG~D~Ew~p~~~~~vallQl~~---~-~-------~cll~~l~~~---------------------~~~-p---~~ 80 (123)
....+-||+|++--.+.+-.++|++. . + ...+++.... +.. + +.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 46799999999744444567888883 1 2 1222221110 001 1 23
Q ss_pred HHHhhcCCCceEEeee-echhhhhhcc----CCCcc--------CceeecHhhh
Q 037980 81 LKKFLADETICFAGME-MNGKVDGLGR----CNLRC--------KTAVELGHLA 121 (123)
Q Consensus 81 L~~~L~d~~i~kvGv~-i~~D~~kL~~----~gl~~--------~~~vDL~~la 121 (123)
+.+|+..++.+.||.+ +.-|..-|.+ +|+.. ...+|.-+++
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~ 141 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVM 141 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHH
Confidence 5567776778899998 8999887763 45432 3456665554
No 52
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=29.33 E-value=1.4e+02 Score=20.48 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCcEEEEEEeeecCCCCC-ceEEEeeeC---CeeEEEE-ccccC-CC---------------------h---HHHHHhhc
Q 037980 37 RQRLVGIDVKFNHRCTKK-AEMLILCAG---NRCLIIQ-LCHLG-QI---------------------P---ESLKKFLA 86 (123)
Q Consensus 37 ~~~vvG~D~Ew~p~~~~~-vallQl~~~---~~cll~~-l~~~~-~~---------------------p---~~L~~~L~ 86 (123)
...++.||+|++--.+.+ ..++|++.- ...+ |+ +.++. .+ + +.|.+|+.
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i-~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~ 82 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVL-YDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLK 82 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEE-EEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHT
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEE-EeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHC
Confidence 357899999997543333 356677752 2232 22 11111 11 1 35677786
Q ss_pred CCCceEEeeeechhhhhhcc-CCCccCceeecHhh
Q 037980 87 DETICFAGMEMNGKVDGLGR-CNLRCKTAVELGHL 120 (123)
Q Consensus 87 d~~i~kvGv~i~~D~~kL~~-~gl~~~~~vDL~~l 120 (123)
+.+.||.++.-|.+-|.+ +. ....+|...+
T Consensus 83 --~~~lV~hn~~fD~~~L~~~~~--~~~~idt~~~ 113 (189)
T 1wlj_A 83 --GKLVVGHDLKHDFQALKEDMS--GYTIYDTSTD 113 (189)
T ss_dssp --TSEEEESSHHHHHHHTTCCCT--TCEEEEGGGC
T ss_pred --CCEEEECCcHHHHHHHHHhCC--CCceechHhh
Confidence 468999999999999988 53 2345665443
No 53
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=27.63 E-value=1.1e+02 Score=18.94 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=22.5
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|.. ..+.+...++++++.++|+..+...
T Consensus 81 F~i~~-~~r~~~l~a~s~~e~~~Wi~al~~~ 110 (126)
T 1fao_A 81 FCLVF-PFRTFYLCAKTGVEADEWIKILRWK 110 (126)
T ss_dssp EEEEE-TTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEe-CCcEEEEECCCHHHHHHHHHHHHHH
Confidence 45554 4455667789999999999988754
No 54
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=27.46 E-value=82 Score=23.37 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=23.4
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.+.+...++++++.++||+.+...
T Consensus 92 F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a 122 (263)
T 3a8p_A 92 FCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122 (263)
T ss_dssp EEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 4455444566777899999999999988754
No 55
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=27.15 E-value=99 Score=19.05 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=18.8
Q ss_pred EEEEEEeCChHHHHHHHHHHHhh
Q 037980 12 NVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 12 ~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
+.+...++++++.++|+..+...
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~ 118 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKAS 118 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHH
Confidence 45566789999999999988754
No 56
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=27.12 E-value=55 Score=21.60 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.5
Q ss_pred CCChHHHHHhh-cCCCceEEeeeech
Q 037980 75 GQIPESLKKFL-ADETICFAGMEMNG 99 (123)
Q Consensus 75 ~~~p~~L~~~L-~d~~i~kvGv~i~~ 99 (123)
+.-|+.|-+.| .|++|.|||.--++
T Consensus 45 gttpqqlgNvLskDkdIvkvgtvkrs 70 (116)
T 2od5_A 45 GTTSQQLGNVLSKDKDIVKVGYIKRS 70 (116)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred CCCHHHHhhHHhcccceeeEEEeecc
Confidence 46899999999 78999999975443
No 57
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=26.75 E-value=1.2e+02 Score=19.96 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=18.8
Q ss_pred hHHHHHhhcC-CCceEEeeeechhh
Q 037980 78 PESLKKFLAD-ETICFAGMEMNGKV 101 (123)
Q Consensus 78 p~~L~~~L~d-~~i~kvGv~i~~D~ 101 (123)
|++|..+|+. |+++.+|-|.....
T Consensus 51 ~~~l~~ll~~~~evliiGtG~~~~~ 75 (122)
T 2ab1_A 51 PADVKEVVEKGVQTLVIGRGMSEAL 75 (122)
T ss_dssp HHHHHHHHTTCCSEEEEEECSSCCS
T ss_pred HHHHHHHhhCCCCEEEECCCCCCcc
Confidence 6788888854 88999999876544
No 58
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.55 E-value=45 Score=23.10 Aligned_cols=32 Identities=6% Similarity=0.101 Sum_probs=26.9
Q ss_pred cceEEEecCCEEEEEEeCChHHHHHHHHHHHh
Q 037980 2 GKYELDIQGNNVKVTVVDHAALIDDNIAALKA 33 (123)
Q Consensus 2 ~~y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~ 33 (123)
.+|.++..+...++.-+.++.+...|+.++..
T Consensus 96 nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~ 127 (136)
T 1v5m_A 96 NTFVLKVENGAEYILETIDSLQKHSWVADIQG 127 (136)
T ss_dssp TEECCBCTTSCBEEEECSSHHHHHHHHHHHHH
T ss_pred ceEEEEecCCcEEEEEcCCHHHHHHHHHHHHh
Confidence 46777888888888899999999999988753
No 59
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=25.91 E-value=37 Score=20.26 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=21.5
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKA 33 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~ 33 (123)
|.+..+ .+.+...++|+++.++|++.+..
T Consensus 63 F~i~~~-~r~~~l~A~s~~e~~~Wi~aLq~ 91 (94)
T 2rsg_A 63 FDISVN-DSVWYLRAQDPDHRQQWIDAIEQ 91 (94)
T ss_dssp EEEEET-TEEEEEECCSSCCTHHHHHHHHH
T ss_pred EEEEeC-CeEEEEECCCHHHHHHHHHHHHh
Confidence 445444 45566778999999999988765
No 60
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=23.20 E-value=1.1e+02 Score=20.80 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.9
Q ss_pred EEEEEEeCChHHHHHHHHHHHhh
Q 037980 12 NVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 12 ~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
+.+..-+++.++.++|++++++.
T Consensus 93 ~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 93 RQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCHHHHHHHHHHHHhC
Confidence 35667789999999999999763
No 61
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.68 E-value=1.2e+02 Score=20.55 Aligned_cols=30 Identities=3% Similarity=0.023 Sum_probs=21.9
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|.|...+.. +...++++++.++||+.+...
T Consensus 82 F~I~t~~r~-~~f~A~s~ee~~eWi~aI~~v 111 (149)
T 1x1f_A 82 FTLVLPKEE-VQLKTENTESGEEWRGFILTV 111 (149)
T ss_dssp EEEECSSCC-EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCE-EEEEcCCHHHHHHHHHHHHHH
Confidence 555555444 456789999999999988754
No 62
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=21.86 E-value=84 Score=21.22 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHhhcC--C--CceEEeeeechhhhhhcc
Q 037980 80 SLKKFLAD--E--TICFAGMEMNGKVDGLGR 106 (123)
Q Consensus 80 ~L~~~L~d--~--~i~kvGv~i~~D~~kL~~ 106 (123)
.|.+||.+ | +...||.++.-|..-|.+
T Consensus 87 ~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~ 117 (180)
T 2igi_A 87 ATLEFLKQWVPAGKSPICGNSIGQDRRFLFK 117 (180)
T ss_dssp HHHHHHTTTSCTTTSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEecCHHHHHHHHHH
Confidence 45567765 1 368999999999998886
No 63
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=21.63 E-value=1.4e+02 Score=19.50 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=23.0
Q ss_pred eEEEecCC-EEEEEEeCChHHHHHHHHHHHhh
Q 037980 4 YELDIQGN-NVKVTVVDHAALIDDNIAALKAL 34 (123)
Q Consensus 4 y~v~~~g~-~i~vtvt~~~~~v~~wi~~~~~~ 34 (123)
|+|-+++. .-.-.++.|+++++.|+..+..+
T Consensus 88 FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L 119 (131)
T 1mai_A 88 FSIVFKDQRNTLDLIAPSPADAQHWVQGLRKI 119 (131)
T ss_dssp EEEEESSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 67777764 23335788999999999888765
No 64
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=20.46 E-value=1.4e+02 Score=21.23 Aligned_cols=31 Identities=3% Similarity=0.055 Sum_probs=23.4
Q ss_pred eEEEecCCEEEEEEeCChHHHHHHHHHHHhhh
Q 037980 4 YELDIQGNNVKVTVVDHAALIDDNIAALKALL 35 (123)
Q Consensus 4 y~v~~~g~~i~vtvt~~~~~v~~wi~~~~~~~ 35 (123)
|.|.. +.+.+...++++++.++|+..+....
T Consensus 124 F~I~t-~~r~~~l~A~s~~e~~~Wv~aL~~~i 154 (228)
T 3tfm_A 124 IDIIM-ADRTFHLIAESPEDASQWFSVLSQVH 154 (228)
T ss_dssp EEEEC-SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 45533 45667778999999999999887653
No 65
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=20.10 E-value=85 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhhh--cCCcEEEEEE
Q 037980 19 DHAALIDDNIAALKALL--KRQRLVGIDV 45 (123)
Q Consensus 19 ~~~~~v~~wi~~~~~~~--~~~~vvG~D~ 45 (123)
.++++|-.-|++-++.| ..-+++|||-
T Consensus 65 ~d~~~Vl~Ele~C~k~~p~~yVRligfD~ 93 (109)
T 1rbl_M 65 AAPQQVLDEVRECRSEYGDCYIRVAGFDN 93 (109)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 36777777777777766 3458999995
Done!