BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037982
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 27 LIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQKY 86
L+E TCK TP Y LC+ +L SD RS T GD+ +ALIMVD IKAKA + I KL+
Sbjct: 7 LVETTCKNTPNYQLCLKTLLSDKRSAT-GDITTLALIMVDAIKAKANQAAVTISKLRHSN 65
Query: 87 P--ALRVPLSACKDRFNAIIIGDVPQAVEALTKGDPKFXXXXXXXXXXXXXSCERGFSG- 143
P A + PL C + I+ +P+A+EALTKGDPKF CE F G
Sbjct: 66 PPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGS 125
Query: 144 KSPITQMNKLNHDISIITASIVKTML 169
KSP + +N H++S + +IV+ +L
Sbjct: 126 KSPFSALNIAVHELSDVGRAIVRNLL 151
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 27 LIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQKY 86
L+E TCK TP Y LC+ +L SD RS T GD+ +ALIMVD IKAKA + I KL+
Sbjct: 6 LVETTCKNTPNYQLCLKTLLSDKRSAT-GDITTLALIMVDAIKAKANQAAVTISKLRHSN 64
Query: 87 P--ALRVPLSACKDRFNAIIIGDVPQAVEALTKGDPKFXXXXXXXXXXXXXSCERGFSG- 143
P A + PL C + I+ +P+A+EALTKGDPKF CE F G
Sbjct: 65 PPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGS 124
Query: 144 KSPITQMNKLNHDISIITASIVKTML 169
KSP + +N H++S + +IV+ +L
Sbjct: 125 KSPFSALNIAVHELSDVGRAIVRNLL 150
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 27 LIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQKY 86
L+E TCK TP Y LC+ +L SD RS T GD+ +ALIMVD IKAKA + I KL+
Sbjct: 5 LVETTCKNTPNYQLCLKTLLSDKRSAT-GDITTLALIMVDAIKAKANQAAVTISKLRHSN 63
Query: 87 P--ALRVPLSACKDRFNAIIIGDVPQAVEALTKGDPKFXXXXXXXXXXXXXSCERGFSG- 143
P A + PL C + I+ +P+A+EALTKGDPKF CE F G
Sbjct: 64 PPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGS 123
Query: 144 KSPITQMNKLNHDISIITASIVKTML 169
KSP + +N H++S + +IV+ +L
Sbjct: 124 KSPFSALNIAVHELSDVGRAIVRNLL 149
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 27 LIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQKY 86
LI + C +T LC+ +L+SDPRS + D++ + +DI +A A + + I L +
Sbjct: 5 LISEICPKTRNPSLCLQALESDPRSASK-DLKGLGQFSIDIAQASAKQTSKIIASLTNQA 63
Query: 87 --PALRVPLSACKDRFNAIIIGDVPQAVEALTKGDPKFXXXXXXXXXXXXXSCERGFSGK 144
P L+ C + + A I + QA + LT GD +CE F G
Sbjct: 64 TDPKLKGRYETCSENY-ADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGP 122
Query: 145 SPI-TQMNKLN 154
I TQ+++ +
Sbjct: 123 PNIPTQLHQAD 133
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 10 FVLAVAYFPISQCQNLPLIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIK 69
V +A + + ++ PL + K+ LC ++ + K D+ A+A + V ++
Sbjct: 218 LVAIIARTDLKKNRDYPLASKDAKKQL---LCGAAIGTHEDDKYRLDLLALAGVDVVVLD 274
Query: 70 AKAGGSL---QHIEKLKQKYPALRV 91
+ G S+ I+ +K+KYP L+V
Sbjct: 275 SSQGNSIFQINMIKYMKEKYPNLQV 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,263,152
Number of Sequences: 62578
Number of extensions: 136792
Number of successful extensions: 231
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 10
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)