Query 037982
Match_columns 169
No_of_seqs 131 out of 824
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cj4_A Invertase inhibitor; pr 100.0 1.1E-35 3.8E-40 216.9 15.7 145 23-169 2-150 (150)
2 1xg2_B Pectinesterase inhibito 100.0 3.3E-34 1.1E-38 209.4 14.2 144 24-169 2-151 (153)
3 1x91_A Invertase/pectin methyl 100.0 1.6E-33 5.4E-38 206.0 11.0 143 23-169 3-151 (153)
4 3iqc_A FLIS, flagellar protein 61.2 12 0.00042 25.6 4.4 34 99-133 32-65 (131)
5 1vh6_A Flagellar protein FLIS; 59.9 13 0.00044 26.0 4.4 34 98-132 28-61 (145)
6 1orj_A Flagellar protein FLIS; 47.8 51 0.0018 22.4 5.8 35 99-134 25-63 (130)
7 2w2u_A Hypothetical P60 katani 32.3 91 0.0031 19.3 5.0 38 95-133 11-48 (83)
8 2e2a_A Protein (enzyme IIA); h 28.0 71 0.0024 20.9 3.7 24 107-130 23-46 (105)
9 1wcr_A PTS system, N, N'-diace 26.9 77 0.0026 20.7 3.7 29 101-130 16-44 (103)
10 1vp7_A Exodeoxyribonuclease VI 26.7 1.3E+02 0.0046 19.5 5.1 43 99-142 31-75 (100)
11 3k1s_A PTS system, cellobiose- 26.4 78 0.0027 20.9 3.7 29 101-130 20-48 (109)
12 3l8r_A PTCA, putative PTS syst 23.8 92 0.0032 20.9 3.7 29 101-130 35-63 (120)
No 1
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=1.1e-35 Score=216.90 Aligned_cols=145 Identities=45% Similarity=0.711 Sum_probs=136.4
Q ss_pred CCchHHHHHcccCCCccchHhcchhCCCCCCcCCHHHHHHHHHHHHHHHHhhHHHHHHHHhh--cCcccchhHHHHHHHH
Q 037982 23 QNLPLIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQ--KYPALRVPLSACKDRF 100 (169)
Q Consensus 23 ~~~~~I~~~C~~T~~~~~C~~~L~s~p~s~~aad~~~La~iai~~a~~~a~~t~~~i~~l~~--~d~~~k~aL~~C~~~y 100 (169)
++.++|+.+|++|+||++|+++|.++|++.. +|+++|+.++++++..+++.+..+++++.+ ++|+.+.+|++|.++|
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~-ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~~~~~~~~al~dC~e~y 80 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSAT-GDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAFSY 80 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4567999999999999999999999999888 799999999999999999999999999886 5788999999999999
Q ss_pred HHHH-hcCHHHHHHHHhCCChhHHHHHHHHHHHhHHHHHhhCCC-CCCcchhhHhHHHHHHHHHHHHHhhC
Q 037982 101 NAII-IGDVPQAVEALTKGDPKFAVDAANDAALEADSCERGFSG-KSPITQMNKLNHDISIITASIVKTML 169 (169)
Q Consensus 101 ~~av-~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~-~s~l~~~n~~~~~l~~ialaii~~l~ 169 (169)
++++ + .|++|+.+++.++|+++++|+|+|+++++||+|||.+ ++||..++.++.+|++|+|+|+++|+
T Consensus 81 ~~a~~~-~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~~~~~pl~~~~~~~~~l~s~aLaii~~l~ 150 (150)
T 2cj4_A 81 KVILTA-SLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFKGSKSPFSALNIAVHELSDVGRAIVRNLL 150 (150)
T ss_dssp HHHHHT-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTTSCCTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999 6 8999999999999999999999999999999999987 68999999999999999999999885
No 2
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=3.3e-34 Score=209.36 Aligned_cols=144 Identities=28% Similarity=0.389 Sum_probs=135.1
Q ss_pred CchHHHHHcccCCCccchHhcchhCCCCCCcCCHHHHHHHHHHHHHHHHhhHHHHHHHHhh--cCcccchhHHHHHHHHH
Q 037982 24 NLPLIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQ--KYPALRVPLSACKDRFN 101 (169)
Q Consensus 24 ~~~~I~~~C~~T~~~~~C~~~L~s~p~s~~aad~~~La~iai~~a~~~a~~t~~~i~~l~~--~d~~~k~aL~~C~~~y~ 101 (169)
+.+.|+.+|++|+||++|+++|.++|++.. +|+++|+.+++++++.+++.+..+++++.+ ++|+.+.+|++|.++|+
T Consensus 2 ~~~~i~~~C~~T~~~~~C~~sL~~~~~~~~-~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y~ 80 (153)
T 1xg2_B 2 ENHLISEICPKTRNPSLCLQALESDPRSAS-KDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYA 80 (153)
T ss_dssp CCHHHHHHGGGSSCHHHHHHHHHTCTTGGG-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhcCCCChHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999887 899999999999999999999999999887 47889999999999999
Q ss_pred HHHhcCHHHHHHHHhCCChhHHHHHHHHHHHhHHHHHhhCCC----CCCcchhhHhHHHHHHHHHHHHHhhC
Q 037982 102 AIIIGDVPQAVEALTKGDPKFAVDAANDAALEADSCERGFSG----KSPITQMNKLNHDISIITASIVKTML 169 (169)
Q Consensus 102 ~av~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~----~s~l~~~n~~~~~l~~ialaii~~l~ 169 (169)
++++ .|++++.++..++|+++++|+|+|+++++||+|||.+ ++||..++.++.+|++|+|+|+++|.
T Consensus 81 ~a~~-~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 81 DAID-SLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHH-HHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9995 9999999999999999999999999999999999985 36788999999999999999999873
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.6e-33 Score=205.96 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=131.8
Q ss_pred CCchHHHHHcccCCCccchHhcchhCCCCCCcCCHHHHHHHHHHHHHHHHhhHHHHHHHHhh--cCcccchhHHHHHHHH
Q 037982 23 QNLPLIEQTCKQTPYYGLCVTSLKSDPRSKTAGDVQAIALIMVDIIKAKAGGSLQHIEKLKQ--KYPALRVPLSACKDRF 100 (169)
Q Consensus 23 ~~~~~I~~~C~~T~~~~~C~~~L~s~p~s~~aad~~~La~iai~~a~~~a~~t~~~i~~l~~--~d~~~k~aL~~C~~~y 100 (169)
++.+.|+.+|++|+||++|+++| +|++.. +|+++|+.+++++++.+++.+..+++++.+ ++|+.+.+|++|.++|
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~-~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~y 79 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFAS-ANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEY 79 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999 677766 899999999999999999999999999887 4788999999999999
Q ss_pred HHHHhcCHHHHHHHHhCCChhHHHHHHHHHHHhHHHHHhhCCC----CCCcchhhHhHHHHHHHHHHHHHhhC
Q 037982 101 NAIIIGDVPQAVEALTKGDPKFAVDAANDAALEADSCERGFSG----KSPITQMNKLNHDISIITASIVKTML 169 (169)
Q Consensus 101 ~~av~~~L~~A~~~l~~~~~~~a~~~lsaa~~~~~tC~d~f~~----~s~l~~~n~~~~~l~~ialaii~~l~ 169 (169)
+++++ .|++++.++..++|+++++|+|+|+++++||+|||.+ ++||..++.++.+|++|+|+|+++|.
T Consensus 80 ~~a~~-~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 80 ESAIG-NLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 99995 9999999999999999999999999999999999985 46788999999999999999999873
No 4
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=61.23 E-value=12 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=15.8
Q ss_pred HHHHHHhcCHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037982 99 RFNAIIIGDVPQAVEALTKGDPKFAVDAANDAALE 133 (169)
Q Consensus 99 ~y~~av~~~L~~A~~~l~~~~~~~a~~~lsaa~~~ 133 (169)
+|+.+++ .+..|..++..||+......++.|..-
T Consensus 32 Lydgal~-~l~~A~~ai~~~d~~~k~~~i~KA~~I 65 (131)
T 3iqc_A 32 LYEGILR-FSSQAKRCIENEDIEKKIYYINRVTDI 65 (131)
T ss_dssp HHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444442 444444444444444444444444433
No 5
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=59.90 E-value=13 Score=25.97 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=16.7
Q ss_pred HHHHHHHhcCHHHHHHHHhCCChhHHHHHHHHHHH
Q 037982 98 DRFNAIIIGDVPQAVEALTKGDPKFAVDAANDAAL 132 (169)
Q Consensus 98 ~~y~~av~~~L~~A~~~l~~~~~~~a~~~lsaa~~ 132 (169)
-+|+.+++ .+..|..++..||+......++.|..
T Consensus 28 mLydgal~-~l~~A~~aie~~d~~~k~~~i~KA~~ 61 (145)
T 1vh6_A 28 MLYNGCLK-FIRLAAQAIENDDMERKNENLIKAQN 61 (145)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555553 55555555555555544444444433
No 6
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=47.76 E-value=51 Score=22.40 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=15.0
Q ss_pred HHHHHHhcCHHHHHHHHhCCCh-hHH---HHHHHHHHHhH
Q 037982 99 RFNAIIIGDVPQAVEALTKGDP-KFA---VDAANDAALEA 134 (169)
Q Consensus 99 ~y~~av~~~L~~A~~~l~~~~~-~~a---~~~lsaa~~~~ 134 (169)
+|+.+++ .+..|..++..||+ ... ...++.|..-.
T Consensus 25 Lydgai~-~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii 63 (130)
T 1orj_A 25 LYDKAIE-CLERAIEIYDQVNELEKRKEFVENIDRVYDII 63 (130)
T ss_dssp HHHHHHH-HHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4444442 44444444444444 433 34444443333
No 7
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=32.29 E-value=91 Score=19.29 Aligned_cols=38 Identities=18% Similarity=-0.052 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037982 95 ACKDRFNAIIIGDVPQAVEALTKGDPKFAVDAANDAALE 133 (169)
Q Consensus 95 ~C~~~y~~av~~~L~~A~~~l~~~~~~~a~~~lsaa~~~ 133 (169)
.+.+..+.+++ .+.+|+..-..|+|..+-.+...|+.+
T Consensus 11 ~~~~~~~~Ai~-lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 11 AQVMLEEMARK-YAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35556677774 777777777777777776655444443
No 8
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=28.00 E-value=71 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=14.2
Q ss_pred CHHHHHHHHhCCChhHHHHHHHHH
Q 037982 107 DVPQAVEALTKGDPKFAVDAANDA 130 (169)
Q Consensus 107 ~L~~A~~~l~~~~~~~a~~~lsaa 130 (169)
..-+|+...+.|||+.++..+..|
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566666667777665554444
No 9
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=26.93 E-value=77 Score=20.68 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=17.0
Q ss_pred HHHHhcCHHHHHHHHhCCChhHHHHHHHHH
Q 037982 101 NAIIIGDVPQAVEALTKGDPKFAVDAANDA 130 (169)
Q Consensus 101 ~~av~~~L~~A~~~l~~~~~~~a~~~lsaa 130 (169)
+++. ...-+|+...+.|+|+.++..+..|
T Consensus 16 G~Ar-s~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 16 GQAR-SLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444 2555666666777777666554444
No 10
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.68 E-value=1.3e+02 Score=19.46 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHhcCHHHHHHHHhCCC--hhHHHHHHHHHHHhHHHHHhhCC
Q 037982 99 RFNAIIIGDVPQAVEALTKGD--PKFAVDAANDAALEADSCERGFS 142 (169)
Q Consensus 99 ~y~~av~~~L~~A~~~l~~~~--~~~a~~~lsaa~~~~~tC~d~f~ 142 (169)
.|+.++. .|.+.+..|..|+ .+++-.....++.....|.+-+.
T Consensus 31 sFEeal~-eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~ 75 (100)
T 1vp7_A 31 DFETALA-ELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLA 75 (100)
T ss_dssp SHHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666663 6666666666654 44455555555566666665543
No 11
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=26.39 E-value=78 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=17.3
Q ss_pred HHHHhcCHHHHHHHHhCCChhHHHHHHHHH
Q 037982 101 NAIIIGDVPQAVEALTKGDPKFAVDAANDA 130 (169)
Q Consensus 101 ~~av~~~L~~A~~~l~~~~~~~a~~~lsaa 130 (169)
+++. ...-+|+...+.|||+.++..+..|
T Consensus 20 G~Ar-s~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 20 GNAR-SFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444 3556666666777777766555444
No 12
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=23.76 E-value=92 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=18.2
Q ss_pred HHHHhcCHHHHHHHHhCCChhHHHHHHHHH
Q 037982 101 NAIIIGDVPQAVEALTKGDPKFAVDAANDA 130 (169)
Q Consensus 101 ~~av~~~L~~A~~~l~~~~~~~a~~~lsaa 130 (169)
+++. ...-+|+...+.|||+.++..+..|
T Consensus 35 G~AR-S~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 35 GNAR-SIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4454 3566667777777777766555544
Done!