BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037983
(205 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255559641|ref|XP_002520840.1| DNA binding protein, putative [Ricinus communis]
gi|223539971|gb|EEF41549.1| DNA binding protein, putative [Ricinus communis]
Length = 209
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 136/207 (65%), Gaps = 14/207 (6%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK 60
M N PRT KRVHAIRR DGSAFE CD C +V IAL DMHECEA+ K VKRFKGV K
Sbjct: 1 MGNPPRTGKRVHAIRRGHDGSAFETCDDCGFLVAIALADMHECEAETKRIVKRFKGVIGK 60
Query: 61 PKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
K+VKQ+ YSDQ RSPF FME F TC + +LI+ID+KGFE W+ MSK+ER+PYV+KAE
Sbjct: 61 HKIVKQN-YSDQPRSPFVTFMEEFRRTCKNGKLIEIDRKGFETWRKMSKQERKPYVVKAE 119
Query: 121 MLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDP-------IYSTEILKCSNSSR 173
+++A+ ++L++E+ + +DDEADS MV K+D SY+ +YS + K
Sbjct: 120 EVNSAYVKSLIKEI-DVSSEVDDEADSMMVGKFDPSYEDYGHNSSCVYSYDSFK-----E 173
Query: 174 FESLNTYNREVMDPWTLERSHGRWLPF 200
++SLNT+ L R R L
Sbjct: 174 YQSLNTWKLWFSVAVILTRKKARHLAI 200
>gi|224145922|ref|XP_002325813.1| predicted protein [Populus trichocarpa]
gi|222862688|gb|EEF00195.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK 60
M N PRTRKRV IRRAPDGSAFE C+ C +V IAL D+HECEA KN VKRFKG+ K
Sbjct: 1 MGNPPRTRKRVRGIRRAPDGSAFENCNNCGVLVAIALADLHECEAGTKNNVKRFKGLDGK 60
Query: 61 PKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
+V+Q S+ DQ RSPFR+FME F++T IDID+KGFE W+NMSKEERQPY+ +A+
Sbjct: 61 QNVVQQ-SFCDQPRSPFRLFMEDFMKTGKIWNTIDIDRKGFETWRNMSKEERQPYITRAD 119
Query: 121 MLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYD 154
+ +AH ++L++++ M ++DEADSA+V K+D
Sbjct: 120 EIYSAHVKSLIQDIDHMSE-VNDEADSAIVGKFD 152
>gi|359486485|ref|XP_003633450.1| PREDICTED: uncharacterized protein LOC100853686 [Vitis vinifera]
Length = 267
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MANQPRTRKRVHAI----RRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKG 56
MAN P TRKRVHAI RR PDGSAFEKC C V IAL DMH+C +K VKRFKG
Sbjct: 1 MANPPITRKRVHAIASGFRRGPDGSAFEKCHGCGVSVAIALADMHDC--GLKRDVKRFKG 58
Query: 57 VCEKPKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYV 116
L KQ + RSPFR+FME F + + I +D+ GFE WK MS EER+PY+
Sbjct: 59 QRGVQNLRKQTCLG-EPRSPFRLFMENFRKASKTGNPIHVDRIGFEAWKKMSMEERKPYI 117
Query: 117 IKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDPIYSTEILKCSNSSRFES 176
I+AE +++ H + LL+E +DDEADSAMV K+DK Y +E S R ++
Sbjct: 118 IQAEKVNSEHLKILLKEEHDRVE-VDDEADSAMVGKFDKFYGFYEDSEDSDSFQSFRSKT 176
Query: 177 LNTYN 181
+ ++N
Sbjct: 177 IESFN 181
>gi|147866156|emb|CAN84129.1| hypothetical protein VITISV_041872 [Vitis vinifera]
Length = 217
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MANQPRTRKRVHAI----RRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKG 56
MAN P TRKRVHAI RR PDGSAFEKC C V IAL DMH+C + VKRFKG
Sbjct: 1 MANPPITRKRVHAIASGFRRGPDGSAFEKCHGCGVSVAIALADMHDC--GLXRDVKRFKG 58
Query: 57 VCEKPKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYV 116
L KQ + RSPFR+FME F + + I +D+ GFE WK MS EER+PY+
Sbjct: 59 QRGVQNLRKQTCLG-EPRSPFRLFMENFRKASKTGNPIHVDRIGFEAWKKMSMEERKPYI 117
Query: 117 IKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDPIYSTEILKCSNSSRFES 176
I+AE +++ H + LL+E +DDEADSAMV K+DK Y +E S R ++
Sbjct: 118 IQAEKVNSEHLKILLKEEHDRVE-VDDEADSAMVGKFDKFYGFYEDSEDSDSFQSFRSKT 176
Query: 177 LNTYN 181
+ ++N
Sbjct: 177 IESFN 181
>gi|10176745|dbj|BAB09976.1| unnamed protein product [Arabidopsis thaliana]
Length = 221
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 104/171 (60%), Gaps = 14/171 (8%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVC-- 58
MA +PRTRKRV A+RRA DGSAF+KC+ C M+ IAL DMHEC K + +VKRFK +
Sbjct: 34 MAIRPRTRKRVQAVRRAADGSAFKKCEECGVMIAIALYDMHECGEK-RREVKRFKYIASG 92
Query: 59 -----EKPKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQ 113
KP S+ D+ RSPF F+E F E +L+D + F WKNMS E+++
Sbjct: 93 NIDNISKP----IGSFEDEPRSPFVFFLEEFRENYNG-DLVDASRICFNVWKNMSAEDQK 147
Query: 114 PYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDPIYSTE 164
P+ +A +D+AH R L EE ++ + D+EADS V +YDK Y+ E
Sbjct: 148 PFNARAMEVDSAHSRKLNEEAKTIYK-ADEEADSKTVGRYDKFYESYVQIE 197
>gi|145357661|ref|NP_196152.2| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
gi|61742741|gb|AAX55191.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
gi|71905543|gb|AAZ52749.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
gi|332003475|gb|AED90858.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
Length = 220
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 104/171 (60%), Gaps = 14/171 (8%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVC-- 58
MA +PRTRKRV A+RRA DGSAF+KC+ C M+ IAL DMHEC K + +VKRFK +
Sbjct: 33 MAIRPRTRKRVQAVRRAADGSAFKKCEECGVMIAIALYDMHECGEK-RREVKRFKYIASG 91
Query: 59 -----EKPKLVKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQ 113
KP S+ D+ RSPF F+E F E +L+D + F WKNMS E+++
Sbjct: 92 NIDNISKP----IGSFEDEPRSPFVFFLEEFRENYNG-DLVDASRICFNVWKNMSAEDQK 146
Query: 114 PYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDPIYSTE 164
P+ +A +D+AH R L EE ++ + D+EADS V +YDK Y+ E
Sbjct: 147 PFNARAMEVDSAHSRKLNEEAKTIYK-ADEEADSKTVGRYDKFYESYVQIE 196
>gi|297810645|ref|XP_002873206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319043|gb|EFH49465.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 188
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK 60
MA +PRTRKRV A+RRA DGSAF+KC+ C M+ I L DMHEC K + +VKRFK +
Sbjct: 1 MAIRPRTRKRVQAVRRAADGSAFKKCEECGVMIAIGLFDMHECGEK-RREVKRFKYIASG 59
Query: 61 PKLVKQ---DSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVI 117
+ S+ D+ RSPF F+E F E L+D + F WKNM E+++P+
Sbjct: 60 NVINISKPIGSFEDEPRSPFVFFLEDFREKYNGN-LVDASRICFNVWKNMLPEDQKPFNA 118
Query: 118 KAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDP-IYSTEILKCSNSSRFES 176
+A +D AH R L EE S+ + DDEADS V +YDK Y+ ++ E +S FE+
Sbjct: 119 RAMEVDLAHSRKLNEEAKSIDK-ADDEADSKTVGRYDKFYESYVHYEEEEDYDSSDHFEN 177
>gi|388522281|gb|AFK49202.1| unknown [Lotus japonicus]
Length = 187
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKG---- 56
M + PR RKRV + RAPDGSAF+ C+ CE V +AL D+H CE K+ +K+ FKG
Sbjct: 1 MVSAPRLRKRVFPLLRAPDGSAFQICELCEVSVAVALADLHHCETKMASKI--FKGKELM 58
Query: 57 ----VCEKPKL-VKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEE 111
V +PK VKQ+ D E F++ ++ I+ D+ GFEKWK+MSK+
Sbjct: 59 QHSPVKVEPKTEVKQEMQDDDPEE------EQFMKDHDNKNYIEADRMGFEKWKSMSKQV 112
Query: 112 RQPYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYDPIYSTEILKC 168
+ PY A L + LL E + + DEADSA K +K D S +K
Sbjct: 113 KLPYTFHAFALKNEYVDDLLLEAHQIAE-VSDEADSAYAVKDEKVNDEADSVNAVKV 168
>gi|186520313|ref|NP_001119174.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
gi|332003477|gb|AED90860.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
Length = 168
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 27 DRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK--PKLVKQ-DSYSDQTRSPFRIFMET 83
+ C M+ IAL DMHEC K + +VKRFK + + K S+ D+ RSPF F+E
Sbjct: 7 NECGVMIAIALYDMHECGEK-RREVKRFKYIASGNIDNISKPIGSFEDEPRSPFVFFLEE 65
Query: 84 FVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMDD 143
F E +L+D + F WKNMS E+++P+ +A +D+AH R L EE ++ + D+
Sbjct: 66 FRENYNG-DLVDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSRKLNEEAKTIYK-ADE 123
Query: 144 EADSAMVWKYDKSYDPIYSTE 164
EADS V +YDK Y+ E
Sbjct: 124 EADSKTVGRYDKFYESYVQIE 144
>gi|145334301|ref|NP_001078532.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
gi|71905547|gb|AAZ52751.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
gi|332003476|gb|AED90859.1| HMG-box (high mobility group) DNA-binding family protein
[Arabidopsis thaliana]
Length = 157
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 32 MVPIALVDMHECEAKVKNKVKRFKGVCEK--PKLVKQ-DSYSDQTRSPFRIFMETFVETC 88
M+ IAL DMHEC K + +VKRFK + + K S+ D+ RSPF F+E F E
Sbjct: 1 MIAIALYDMHECGEK-RREVKRFKYIASGNIDNISKPIGSFEDEPRSPFVFFLEEFRENY 59
Query: 89 GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSA 148
+L+D + F WKNMS E+++P+ +A +D+AH R L EE ++ + D+EADS
Sbjct: 60 NG-DLVDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSRKLNEEAKTIYK-ADEEADSK 117
Query: 149 MVWKYDKSYDPIYSTE 164
V +YDK Y+ E
Sbjct: 118 TVGRYDKFYESYVQIE 133
>gi|71905549|gb|AAZ52752.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
Length = 125
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 12/88 (13%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVC-- 58
MA +PRTRKRV A+RRA DGSAF+KC+ C M+ IAL DMHEC K + +VKRFK +
Sbjct: 33 MAIRPRTRKRVQAVRRAADGSAFKKCEECGVMIAIALYDMHECGEK-RREVKRFKYIASG 91
Query: 59 -----EKPKLVKQDSYSDQTRSPFRIFM 81
KP S+ D+ RSPF F+
Sbjct: 92 NIDNISKP----IGSFEDEPRSPFVFFL 115
>gi|71905545|gb|AAZ52750.1| hypothetical protein At5g05330 [Arabidopsis thaliana]
Length = 130
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 12/88 (13%)
Query: 1 MANQPRTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVC-- 58
MA +PRTRKRV A+RRA DGSAF+KC+ C M+ IAL DMHEC K + +VKRFK +
Sbjct: 33 MAIRPRTRKRVQAVRRAADGSAFKKCEECGVMIAIALYDMHECGEK-RREVKRFKYIASG 91
Query: 59 -----EKPKLVKQDSYSDQTRSPFRIFM 81
KP S+ D+ RSPF F+
Sbjct: 92 NIDNISKP----IGSFEDEPRSPFVFFL 115
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 35/161 (21%)
Query: 5 PRTRKRVHA----IRRAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVK-----NKVKR 53
P+ RKRV A ++RA DGSAF +C+ C+ VP+ L+DMH C EAK+K V++
Sbjct: 4 PKQRKRVEAETSSLKRARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQVVEK 63
Query: 54 FKGVCEKP-------------------KLVKQDSYSDQTRSPFRIFMETFVE-----TCG 89
V +KP + VK + + + F +FM+ F +
Sbjct: 64 VTDVKKKPAEKKNATTTEPKPKKSRRLRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPD 123
Query: 90 SRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
S+ + + ++G EKWK+M+ EE++PYV KA L A + +A+
Sbjct: 124 SKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAM 164
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 21/144 (14%)
Query: 2 ANQPRTRKRVHA--IRRAPDGSAFEKCDRCEAMVPIALVDMHEC----------EAKVKN 49
N R+RKRV A ++R+ DGSAF +C+ C VP+ L+DMH C EA+V
Sbjct: 8 GNAARSRKRVEATVLKRSRDGSAFTRCEACNKDVPVVLIDMHSCSLDEKIRMTLEAQVVE 67
Query: 50 KVKRFKGVCEKPKLVKQDSYSD--QTRSP--FRIFMETF-----VETCGSRELIDIDQKG 100
K K K D + RSP F +FM+ F ++ + + ++G
Sbjct: 68 KTVEVASADRKKSSAKGGGNKDAKRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEG 127
Query: 101 FEKWKNMSKEERQPYVIKAEMLDA 124
E+WK+M+ EE++PY+ KA L A
Sbjct: 128 GERWKSMTDEEKKPYIEKAAELKA 151
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 32/152 (21%)
Query: 2 ANQPRTRKRVHA--IRRAPDGSAFEKCDRCEAMVPIALVDMHEC----------EAKVKN 49
N R+RKRV A ++R+ DGSAF +C+ C VP+ L+DMH C EA+V
Sbjct: 8 GNAARSRKRVEATVLKRSRDGSAFTRCEACNKDVPVVLIDMHSCSLDKHIRMMLEAQV-- 65
Query: 50 KVKRFKGVCEKPKLVKQDSY----------SDQTRSP--FRIFMETF-----VETCGSRE 92
V++ V KP + S + + RSP F +FM+ F ++
Sbjct: 66 -VEKTVEVAAKPAERNKSSAKGHGGGGNKDAKRKRSPTAFFLFMDDFRKEFKAAHPDNKS 124
Query: 93 LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDA 124
+ + ++G EKWK+M+ EE++PYV KA L A
Sbjct: 125 VATVAKEGGEKWKSMTDEEKKPYVEKAAELKA 156
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 43/172 (25%)
Query: 2 ANQPRTRKRVHA---------IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVK 52
+N P+ RKRV A +RRA DGSAF C+ C V +AL+ MH C K +V
Sbjct: 8 SNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVN 67
Query: 53 RFKGVCE--------------------KPKLVKQ-------DSYSDQTRSP---FRIFME 82
V E KPK +K+ S S++ + P F IFM
Sbjct: 68 LEAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMS 127
Query: 83 TFVETCGSRE----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
F +T S D + G EKWK++++EE++ Y+ KA L A + ++L
Sbjct: 128 DFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 44/169 (26%)
Query: 6 RTRKRVHA-----------IRRAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKV----- 47
++RKRV A + RA DGSAF +CD C VP+AL+ MH C +AK+
Sbjct: 8 KSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 67
Query: 48 ----------KNKVKRFKGVCEKPKL--------VKQDSYSDQTRSP---FRIFMETFVE 86
K ++ + +PK K+D + + P F IFM+ F +
Sbjct: 68 SQTVEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDFRK 127
Query: 87 T-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
+ S+ + ++ ++G EKWK+M+ EE++PY KA L A + +AL
Sbjct: 128 SYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL 176
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 43/172 (25%)
Query: 2 ANQPRTRKRVHA---------IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVK 52
+N P+ RKRV A +RRA DGSAF C+ C V +AL+ MH C K +V
Sbjct: 8 SNAPKQRKRVEAETSTNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVN 67
Query: 53 RFKGVCE--------------------KPKLVKQ-------DSYSDQTRSP---FRIFME 82
V E KPK +K+ S S++ + P F IFM
Sbjct: 68 LEAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMN 127
Query: 83 TFVETCGSRE----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
F +T + D + G EKWK++++EE++ Y+ KA L A + ++L
Sbjct: 128 DFRKTFKTEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 33/166 (19%)
Query: 2 ANQPRTRKRVH--AIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCE 59
AN PR RKRV ++RA DGSAF +C+ C VP+ L+DMH C K ++ V E
Sbjct: 8 ANPPRPRKRVEVDTMKRARDGSAFTRCEVCNKDVPVVLIDMHSCSLDSKIRMNLEAQVVE 67
Query: 60 KPKLVKQDSYSDQTRSP--------------------------FRIFMETFVET-----C 88
K VK + +P F +FM+ F +
Sbjct: 68 KETEVKNKPVERKRAAPSENKERKVKKGKKNVNTNKPKRAPTAFFLFMDDFRKEYKELHP 127
Query: 89 GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134
++ + + ++G E+W++M+ EE++PY +A L A + + + E+
Sbjct: 128 DNKSVASVAKEGGERWRSMTIEEKKPYTDRAAELKAEYVKEIEEKA 173
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 41/169 (24%)
Query: 1 MANQPRTRKRVHAIR--------RAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVK-- 48
MA+Q RKR+ A+ R+ DGSAF +C+ C VP+AL+ MH C EAK+K
Sbjct: 1 MASQ--GRKRIDAVDSRAASVLVRSRDGSAFARCEECNKSVPVALISMHSCSLEAKIKMN 58
Query: 49 ------------NKVKRFKGVCEKPKL-------VKQDSYSDQTRSP---FRIFMETFVE 86
K +R K ++PK K+ +Q + P F +F++ F +
Sbjct: 59 LDAQVIEQANEAKKTERKKPSSKEPKAKRAKTEKAKKVEDPNQPKRPPTAFFVFLDDFRK 118
Query: 87 -----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
GS+++ + ++G EKW+ M+ EE++PY+ K L + +A+
Sbjct: 119 EFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELKEEYEKAM 167
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 40/166 (24%)
Query: 3 NQPRTRKRVHA----IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVC 58
N PR RKRV ++RA DGS F KCD C +P+AL DMH+C+ +++K++
Sbjct: 10 NPPRQRKRVDVDPANLKRARDGSGFTKCDVCNKHIPVALSDMHDCQ--LEDKIRSNFDAS 67
Query: 59 EKPKLV--------------------KQDSYSDQTRSP---------FRIFMETFVETCG 89
++ K K+ + + R P F +FM+ F +T
Sbjct: 68 KETKHADAQKPPEAKKAKKKSADEKPKKRTREKKARDPNQPKKPATAFFVFMDDFRKTYK 127
Query: 90 S-----RELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
+ + ++G KWK MS E+++PY+ KA L A + +A+
Sbjct: 128 ETNPDVKGAAQVGKEGGLKWKAMSDEDKKPYLEKAAELKAEYEKAM 173
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 6 RTRKRVHA-----IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK 60
RTRKRV A ++RA DGSAF +C+ C V + L+DMH C K ++ V E+
Sbjct: 8 RTRKRVEATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLEAQVVEQ 67
Query: 61 PKLV-------------KQDSYSDQTRSP--FRIFMETF-----VETCGSRELIDIDQKG 100
V + R P F +FM F E ++ + + ++G
Sbjct: 68 AVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEG 127
Query: 101 FEKWKNMSKEERQPYVIKAEMLDA 124
E+WK+MS E+++PY+ KA L A
Sbjct: 128 GERWKSMSDEDKKPYLDKAAELKA 151
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 6 RTRKRVHA-----IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEK 60
RTRKRV A ++RA DGSAF +C+ C V + L+DMH C K ++ V E+
Sbjct: 8 RTRKRVEATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLEAQVVEQ 67
Query: 61 PKLV-------------KQDSYSDQTRSP--FRIFMETF-----VETCGSRELIDIDQKG 100
V + R P F +FM F E ++ + + ++G
Sbjct: 68 AVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEG 127
Query: 101 FEKWKNMSKEERQPYVIKAEMLDA 124
E+WK+MS E+++PY+ KA L A
Sbjct: 128 GERWKSMSDEDKKPYLDKAAELKA 151
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 40/165 (24%)
Query: 8 RKRVHA---------IRRAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVKNK-----V 51
RKRV A + R DGSAF +CD C+ VP+AL+ MH C EA++K V
Sbjct: 3 RKRVEAEDTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEAQIV 62
Query: 52 KRFKGVCEKPKLVKQDSYSD-------------------QTRSPFRIFMETFVET----- 87
++ +KP K+ + ++ + + F IF++ F +T
Sbjct: 63 EKPAETTKKPAERKKPTSTEPKAKKAKKDKKPNNPNKPKRPPTAFFIFLDEFRKTFKEAN 122
Query: 88 CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132
S+++ + ++ EKWK M+ EE++PY KA L A + +AL E
Sbjct: 123 PDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYDKALGE 167
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 39/164 (23%)
Query: 6 RTRKRVHAIR--------RAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVK----NKV 51
++RKRV A+ RA DGSAF +CD C+ VP+AL+DMH C EAK+K +V
Sbjct: 5 QSRKRVDAVDSRAASVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQV 64
Query: 52 KRFKGVCEKPKLVKQDSYSDQT------------------RSP--FRIFMETFVET---- 87
+KP+ K S R P F +F++ F ++
Sbjct: 65 VEQAAEAKKPERKKPKSKEPMAKKAKVGKGKKVKDPNMPKRPPTAFFVFLDDFRKSFKEA 124
Query: 88 -CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
S+++ + ++ EKW++M+ EE++PY+ K L + +A+
Sbjct: 125 NPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKEEYEKAM 168
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 40/167 (23%)
Query: 2 ANQPRTRKRVHA----------IRRAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVKN 49
+N P+ RKRV A +RRA DGSAF C+ C V +AL+ MH C +AK++
Sbjct: 8 SNAPKQRKRVEAETSSNNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRA 67
Query: 50 KVKRFKGVCE--------------KPKLVKQ-------DSYSDQTRSP---FRIFMETFV 85
+V + + KPK +K+ S S++ + P F IFM F
Sbjct: 68 QVVETQAEAKKKPAEKKKATADGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMNDFR 127
Query: 86 ETCGSRE----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRR 128
+T + D + G EKW +++++E++ Y+ KA L A + +
Sbjct: 128 KTFKTEHNGSFAKDAAKIGGEKWMSLTEDEKKVYLDKAAELKAEYNK 174
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 39/164 (23%)
Query: 6 RTRKRVHAIR--------RAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVK----NKV 51
+++KRV A+ RA DGSAF +CD C+ VP+AL+DMH C EAK+K +V
Sbjct: 5 QSKKRVDAVDSRAASVLLRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQV 64
Query: 52 KRFKGVCEKPKLVKQDSYSDQT------------------RSP--FRIFMETFVET---- 87
+KP+ K S R P F F++ F ++
Sbjct: 65 VEQAAEAKKPERKKPKSKEPMAKKAKVEKVKKVKDPNMPKRPPTAFFAFLDDFRKSFKEA 124
Query: 88 -CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
S+++ + ++ EKW++M+ EE++PY+ K L A + +A+
Sbjct: 125 NPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKAEYEKAM 168
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 13 AIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEKPKLVKQ------ 66
++ RA DGSAF KC+ C+ VP+AL+ H C K K+ V EKP KQ
Sbjct: 22 SLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNLEAQVVEKPTEAKQKPAERK 81
Query: 67 -----------DSYSDQTRSP---------FRIFMETFVE-----TCGSRELIDIDQKGF 101
+ R P F +FM+ F + S+++ + ++G
Sbjct: 82 KGSSTEPKLKKAKKEKKGRDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGG 141
Query: 102 EKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
+WK+M+ EE++ YV KA L A + +AL
Sbjct: 142 VRWKSMTDEEKKQYVDKAAELKAENDKAL 170
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 33/156 (21%)
Query: 2 ANQPRTRKRVHA--IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCE 59
N PR+RKRV A ++RA DGSAF +C+ C V I L+D+H C K ++ V E
Sbjct: 5 GNAPRSRKRVEATVLKRARDGSAFTRCEACNKDVAIVLIDLHSCSLDSKIRLSLESQVVE 64
Query: 60 KPKLVKQDS------------------------YSDQTRSP--FRIFMETF-VETCGS-- 90
K V++ + R P F +FM+ F VE S
Sbjct: 65 KAVEVQEKKRKAPPAAAGGKGKKKSKADGDGAKKAKAKRPPTAFFLFMKDFRVEFKTSHP 124
Query: 91 --RELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDA 124
+ + + + EKW++M++EE++PY +A+ L A
Sbjct: 125 DEKGVAAVGKAAGEKWRSMTEEEKKPYNDQAKELKA 160
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 41/155 (26%)
Query: 7 TRKRVHA--IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEKPKLV 64
RKRV A ++RA DGSAF +C+ C VP+ L+D+H C K + V EK +
Sbjct: 10 ARKRVEAAVLKRARDGSAFTRCEGCNKNVPVVLIDLHSCSLDSKIRTSLEAQVVEKTVEI 69
Query: 65 KQ------------------------DSYSDQTRSP--FRIFMETF-VETCGSRELIDID 97
+ + + + R P F IFM+ F +E S D
Sbjct: 70 SKPEKKRKAPSSAAAGKGSKKGKSGAGAKNGKKRPPTAFFIFMKDFRLEFKASHP----D 125
Query: 98 QKGFE--------KWKNMSKEERQPYVIKAEMLDA 124
+KG KWK M+ EE++PY+ +A+ L A
Sbjct: 126 EKGVSAVGKAAGVKWKAMTDEEKKPYLDQAKELKA 160
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 34/160 (21%)
Query: 14 IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNK--------------VKRFKGVCE 59
++R+ +GS F +CD+CE + A VD H+CE + K K VK+ G +
Sbjct: 26 MKRSANGSGFTRCDKCEKDIAAARVDNHDCEQEAKTKELLTKMKKQVMKQVVKKSDGAIK 85
Query: 60 ------KPKLVKQDSYSDQTRSP---------FRIFMETFVETCG-----SRELIDIDQK 99
+PK++K+ + +T+ P F +FME+F +T S+ + +
Sbjct: 86 STKRKSEPKVIKKQAKKVKTKDPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKA 145
Query: 100 GFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPR 139
G EKWK M++EER PY AE + +A+ P+
Sbjct: 146 GGEKWKQMTEEERAPYNKDAEARKLNYEQAMTNYKNKGPK 185
>gi|413925110|gb|AFW65042.1| hypothetical protein ZEAMMB73_846021 [Zea mays]
Length = 123
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 2 ANQPRTRKRVHA--IRRAPDGSAFEKCDRCEAMVPIALVDMHEC 43
N R+RKRV A ++R+ DGSAF +C+ C VP+ L+DMH C
Sbjct: 8 GNAARSRKRVEATVLKRSRDGSAFTRCEACNKDVPVVLIDMHSC 51
>gi|334187856|ref|NP_001190371.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|332005782|gb|AED93165.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 157
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 2 ANQPRTRKRVHA---------IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKV 51
+N P+ RKRV A +RRA DGSAF C+ C V +AL+ MH C K +V
Sbjct: 8 SNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRV 66
>gi|148910368|gb|ABR18262.1| unknown [Picea sitchensis]
Length = 122
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 1 MANQPRTRKRVHA----IRRAPDGSAFEKCDRCEAMVPIALVDMHEC--EAKVKNKV 51
M+N PR RKRV A +R DGS F C++C VP D+H+C EA++K+ +
Sbjct: 1 MSNPPRIRKRVGADPSKFKRGVDGSGFITCEKCGFSVPAGAADVHDCKLEARIKSSL 57
>gi|297812489|ref|XP_002874128.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
gi|297319965|gb|EFH50387.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
Length = 171
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 20 GSAFEKCDRCEAMVPIALVDMHECEAKVKNKVKRFKGVCEKPKLVKQDSYS-DQTRSP-- 76
GS F +C+ C +P LV MH C A+ V + E K+ + D R P
Sbjct: 9 GSFFIRCEGCNKKIPEDLVRMHICYARYGFAVYQAAQAVEAESQAKRRRKAKDSNRPPLT 68
Query: 77 -FRIFMETF---VETCGSRELI-DIDQKGFEKWKNMSKEERQPYVIKAEMLDA 124
F IFM F T + L+ ++ + G+E WK+M+++E++ YV KA L A
Sbjct: 69 GFVIFMNGFRKSFRTDYNGSLVKEVSKIGWEMWKSMTEDEKKVYVDKAAELMA 121
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 36/162 (22%)
Query: 1 MANQPRTRKRVHA---------IRRAPDGSAF---------EKCDRCEAMVPIALVDMHE 42
+N P+ RKRV A +RRA DGSAF C EA V V+
Sbjct: 7 TSNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCLCVFGCCCCCCSEAQV----VETQA 62
Query: 43 CEAKVKNKVKRFKGVCEKPKLVKQ-------DSYSDQTRSP---FRIFMETFVETCGSRE 92
K + K+ KPK +K+ S S++ + P F IFM F +T S
Sbjct: 63 EAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH 122
Query: 93 ----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
D + G EKWK++++EE++ Y+ KA L A + ++L
Sbjct: 123 NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 164
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 10/53 (18%)
Query: 6 RTRKRVHAIRR--------APDGSAFEKCDRCEAMVPIALVDMHEC--EAKVK 48
++RKRV A+ A DGSAF C C+ VP+AL+DMH C EAK+K
Sbjct: 5 QSRKRVDAVDCRAASVLVCAKDGSAFAHCYDCKKNVPVALIDMHSCSLEAKIK 57
>gi|397788067|gb|AFO66682.1| SoxE [Sycon ciliatum]
Length = 439
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 45 AKVKNKVKRFKGVCEKPKLVKQDSYSD--QTRSPFRIFM-------ETFVETCGSRELID 95
A + N+ ++ V +KPK V++ D + R P FM + + S D
Sbjct: 67 APINNEEEQVDAV-QKPKNVRKRKRGDDDRVRRPMNAFMVWSKDARKELAKQDPSVHNAD 125
Query: 96 IDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRR 128
+ +K E WK MS+EE++PYV K+E L A HRR
Sbjct: 126 LSKKLGELWKLMSEEEKRPYVEKSESLRAIHRR 158
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + G EKWK+MS E+ P+V KAE L A + +
Sbjct: 45 SAFFVFMEGFRKEFKEKNPKNKSVAAVGKAGGEKWKSMSDAEKAPFVKKAEKLKAEYEKK 104
Query: 130 LL 131
++
Sbjct: 105 MV 106
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKA--EMLDAAHR 127
S F +FM F + G++ + + + EKW++MS++E+QPYV +A + D
Sbjct: 39 SAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKT 98
Query: 128 RALLEEVTSMPRFMDDEADSA 148
+A +E+ TS + D+ D +
Sbjct: 99 KANIEKSTSSKKAKTDDDDGS 119
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETCG-----SRELIDIDQKGF 101
K K KG + P K+ S S F +FME F ET ++ + + + G
Sbjct: 20 TKKPAKGGKGAAKDPNKPKRPS------SAFFVFMEDFRETYKKEHPKNKSVAAVGKAGG 73
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 74 EKWKSLSDSEKAPYVAKAD 92
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + G E+WK+MS E+ P+V KAE L A + +
Sbjct: 15 SAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEKAPFVKKAEKLKAEYEKK 74
Query: 130 LLEEVTSMPRFMDDEAD 146
++ + DD AD
Sbjct: 75 MV-AYNKGEKVKDDNAD 90
>gi|30688974|ref|NP_568430.2| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
gi|332005779|gb|AED93162.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
Length = 148
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 17 APDGSAFEKCDR--CEAMVPIALVDMHECEAKVKNKVKR-FKGVCEKPKLVKQDSYSDQT 73
+ D S F +C+ C +P+ LV MH C A + R F + K S +
Sbjct: 6 SEDSSIFARCEDVDCNKKIPVELVRMHICYAMFHRTLARGFGTQTQAKKKPTNKKKSTTS 65
Query: 74 RSPFRIFMETF---VETCGSRELIDIDQK-GFEKWKNMSKEERQPYVIKA 119
+ F +FM F T + L+ K G+E WK+M+++E++ Y+ KA
Sbjct: 66 LTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKA 115
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVE-----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + G E+WK+MS E+ P+V KAE L A + +
Sbjct: 38 SAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEKAPFVSKAEKLKAEYGKK 97
Query: 130 L 130
+
Sbjct: 98 M 98
>gi|397788095|gb|AFO66696.1| SoxF2 [Leucosolenia complicata]
Length = 660
Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 62 KLVKQDSYSDQTRSPFRIFME----TFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVI 117
KLV Q S + +PF I+ + T + + D+ ++ W+ MS EE++PY++
Sbjct: 110 KLVDQASRIKRPMNPFMIWAKGERSTILTQNPTMHNSDVSRQLGRNWRGMSLEEKRPYIL 169
Query: 118 KAEMLDAAHRR 128
AE L HRR
Sbjct: 170 AAEHLAEEHRR 180
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F +T ++ + + + G +KWK +S EE+ PY KAE A +++
Sbjct: 41 SAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKN 100
Query: 130 L 130
+
Sbjct: 101 M 101
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 55 KGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSK 109
K +K K VK + + S F +FME F + ++ + + + G +KWK++S+
Sbjct: 32 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 91
Query: 110 EERQPYVIKAEMLDAAHRRAL 130
E+ PYV KAE + +++
Sbjct: 92 AEKAPYVAKAEKRKTEYNKSM 112
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 55 KGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSK 109
K +K K VK + + S F +FME F + ++ + + + G +KWK++S+
Sbjct: 30 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 89
Query: 110 EERQPYVIKAEMLDAAHRRAL 130
E+ PYV KAE + +++
Sbjct: 90 AEKAPYVAKAEKRKTEYNKSM 110
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 55 KGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSK 109
K +K K VK + + S F +FME F + ++ + + + G +KWK++S+
Sbjct: 32 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 91
Query: 110 EERQPYVIKAEMLDAAHRRAL 130
E+ PYV KAE + +++
Sbjct: 92 AEKAPYVAKAEKRKTEYNKSM 112
>gi|123445154|ref|XP_001311340.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121893145|gb|EAX98410.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 96
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHR 127
DI +K E WKNMS+EE++PY+ KAE A H+
Sbjct: 28 DIAKKLGEMWKNMSEEEKKPYIEKAEAEKAEHK 60
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGF 101
K K KG + P K+ S S F +FME F E ++ + + + G
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPS------SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGG 71
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 72 EKWKSLSDSEKAPYVAKAD 90
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGF 101
K K KG + P K+ S S F +FME F E ++ + + + G
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPS------SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGG 71
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 72 EKWKSLSDSEKAPYVAKAD 90
>gi|449461301|ref|XP_004148380.1| PREDICTED: uncharacterized protein LOC101214826 [Cucumis sativus]
Length = 1573
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 83 TFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM----- 137
+FV+ G +D ++K + + NM+ E QP + E+++ A L + +M
Sbjct: 1261 SFVQNQG----LDRNKKKVQSYHNMNTSENQPEELIDEVVNLADNAILKDHFPTMAPLNF 1316
Query: 138 -PRFMDDEADSAMVWK------YDKSYDPIYSTEILKCSNSSRFESLNTYNREV 184
P D+E DS+ +K Y +S DP + ++ S+S + S+N + R +
Sbjct: 1317 LPSMHDNEKDSSRKFKIQRRLSYGQSDDPFCAGDVGNNSSSDFWSSINLHGRSL 1370
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGF 101
K K KG + P K+ S S F +FME F E ++ + + + G
Sbjct: 539 TKKPAKGAKGAAKDPNKPKRPS------SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGG 592
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 593 EKWKSLSDSEKAPYVAKAD 611
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 420 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 470
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F E ++ + + + G +KWK+MS E+ PY+ KAE + ++
Sbjct: 43 SAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKS 102
Query: 130 L 130
+
Sbjct: 103 M 103
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F E ++ + + + G +KWK++S+ E+ PYV KAE + +
Sbjct: 44 SAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYEKK 103
Query: 130 L 130
L
Sbjct: 104 L 104
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKA--EMLDAAHR 127
S F +FM F + G++ + + + EKW++MS++E+QPYV +A + D
Sbjct: 39 SAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKT 98
Query: 128 RALLE-EVTSMPRFMDDEADSA 148
+A +E E TS + D+ D +
Sbjct: 99 KANIEKESTSSKKAKTDDDDGS 120
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F E ++ + + + G EKWK++S E+ PY+ KAE
Sbjct: 44 SAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDAEKAPYIAKAE 94
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +++ I + G +KWK++S E+ PYV KAE L A + +
Sbjct: 33 SAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKK 92
Query: 130 L 130
+
Sbjct: 93 I 93
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +++ I + G +KWK++S E+ PYV KAE L A + +
Sbjct: 33 SAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKK 92
Query: 130 L 130
+
Sbjct: 93 I 93
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +++ I + G +KWK++S E+ PYV KAE L A + +
Sbjct: 33 SAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKK 92
Query: 130 L 130
+
Sbjct: 93 I 93
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +++ I + G +KWK++S E+ PYV KAE L A + +
Sbjct: 33 SAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKK 92
Query: 130 L 130
+
Sbjct: 93 I 93
>gi|224052252|ref|XP_002187547.1| PREDICTED: transcription factor A, mitochondrial [Taeniopygia
guttata]
Length = 277
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 72 QTRSPFRIFM-ETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
+ RS F IF+ E F E+ GS + + +K F+ WK MS ++QPY+ AE
Sbjct: 165 RARSGFNIFLSENFQESEGSSPVAKL-KKLFDTWKKMSASQKQPYLQLAE 213
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F +T ++ + + + G EKWK++S E+ P+V KA+
Sbjct: 43 SAFFVFMEDFRQTYKKDHPNNKSVAAVGKAGGEKWKSLSDSEKAPFVAKAD 93
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + G +KWK++S+ E+ PY KAE + +
Sbjct: 44 SAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKD 103
Query: 130 LLEEVTSMPRFMDDEAD 146
+ + DDE+D
Sbjct: 104 MAAYNKRLAGGNDDESD 120
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVE-----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +R + + + G EKWK+M+ E+ PYV KAE + + +
Sbjct: 43 SAFFVFMEEFRKQYKEANPDNRSVSAVGKAGGEKWKSMTDAEKAPYVQKAEKRKSEYNKK 102
Query: 130 L 130
+
Sbjct: 103 M 103
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + +++ I + G +KWK++S E+ PYV KAE L A + +
Sbjct: 33 SAFFVFMEEFRKDYKEKHPNVKQVSLIGKAGGDKWKSLSDAEKAPYVSKAEKLKAEYTKK 92
Query: 130 L 130
+
Sbjct: 93 I 93
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 93 LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWK 152
+ D+ +K E W N+S E+QPY+ KA L + + + P F D AD K
Sbjct: 108 IGDVAKKLGEMWNNLSDSEKQPYITKAAKL-----KENCSSLGTCPCFFQDVADYKSKGK 162
Query: 153 YDKSYDP 159
+D + P
Sbjct: 163 FDGAKGP 169
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F E ++ + + + G +KWK++S+ E+ PYV KAE
Sbjct: 40 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAE 90
>gi|30688969|ref|NP_851063.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
gi|75249518|sp|Q941D1.1|HMG12_ARATH RecName: Full=High mobility group B protein 12; AltName:
Full=Nucleosome/chromatin assembly factor group D 12
gi|15529240|gb|AAK97714.1| unknown protein [Arabidopsis thaliana]
gi|56381971|gb|AAV85704.1| At5g23405 [Arabidopsis thaliana]
gi|332005778|gb|AED93161.1| HMG-box (high mobility group) DNA-binding protein [Arabidopsis
thaliana]
Length = 149
Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 17 APDGSAFEKCDR--CEAMVPIALVDMHECEAKVKNKV--KRFKGVCEKPKLVKQDSYSDQ 72
+ D S F +C+ C +P+ LV MH C A + + F + K S
Sbjct: 6 SEDSSIFARCEDVDCNKKIPVELVRMHICYAMFHRTLAARGFGTQTQAKKKPTNKKKSTT 65
Query: 73 TRSPFRIFMETF---VETCGSRELIDIDQK-GFEKWKNMSKEERQPYVIKA 119
+ + F +FM F T + L+ K G+E WK+M+++E++ Y+ KA
Sbjct: 66 SLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKA 116
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F E ++ + + + G +KWK++S+ E++PYV KAE
Sbjct: 44 SAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEKRPYVDKAE 94
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETCG-----SRELIDIDQKGF 101
K K KG + P K+ S S F +FME F T ++ + + + G
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPS------SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGG 71
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 72 EKWKSLSDSEKAPYVAKAD 90
>gi|123456225|ref|XP_001315850.1| HMG box family protein [Trichomonas vaginalis G3]
gi|121898539|gb|EAY03627.1| HMG box family protein [Trichomonas vaginalis G3]
Length = 100
Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHR 127
DI +K E WKN+S+EE++PY+ KAE A H+
Sbjct: 28 DIAKKLGEMWKNLSEEEKKPYIEKAEAEKAEHK 60
>gi|357612267|gb|EHJ67890.1| hypothetical protein KGM_14775 [Danaus plexippus]
Length = 999
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 60 KPKLVKQDSYSDQTRSPFRIFMETFVE--TCGSRELIDIDQKGF--------------EK 103
P +V D+ S+Q +SP ++ ++ FVE +C + E D +Q +K
Sbjct: 729 SPGIVILDNRSNQNQSPLKLNLDHFVENTSCSTSECADDEQIALALQAQELAARRRARDK 788
Query: 104 WKNMSKEERQPYVIKAEMLD------AAHRRALLEEV------TSMPRFMDDEADSAMVW 151
+K+ + +V A + D AA R +L+ V +P ++ +A V
Sbjct: 789 FKSSEDLIHRLFVCIAGVADQLQTNFAADLRNILKAVFLINQTADVPESIEYQAGEDQVI 848
Query: 152 KYDKSYDPIYST-EILKCSNS------SRFESLNTYNREVMDPWTLER 192
+ S+D +YS E+ SNS SR NT N + +P +R
Sbjct: 849 QNGSSFDSVYSAEEVYADSNSDSTSEPSRVARRNTVNSTMNEPNVSDR 896
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVE-----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FM F E ++ + + + E+WK++S+ E+ PYV KA L + +A
Sbjct: 47 SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKA 106
Query: 130 L 130
+
Sbjct: 107 I 107
>gi|336366061|gb|EGN94409.1| hypothetical protein SERLA73DRAFT_188283 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378733|gb|EGO19890.1| hypothetical protein SERLADRAFT_478344 [Serpula lacrymans var.
lacrymans S7.9]
Length = 311
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 43 CEAKVKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETCGSRELID---IDQK 99
+ K K +VK K V K+ K D + +P+ +F V + ++ + D I +
Sbjct: 109 SKTKRKTRVKAKKPVL---KVKKADLPPTRPGNPYVLFFAERVISQHAKSISDTQAIASE 165
Query: 100 GFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFM 141
+ W+ + EE++PYV K + L AA+ +A + S+PR M
Sbjct: 166 SAKVWRGLGDEEKEPYVQKHKELKAAYEQAATDYWASLPREM 207
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 43 SAFFVFMEDFRETFKKEHPKNKSVAAVGKAAGDKWKSLSDAEKAPYVAKAE 93
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S + IFMETF + + + G EKW +MS+EE+ PYV +A + + +A
Sbjct: 142 SAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSEEEKAPYVAEASVRKGQYEQA 201
Query: 130 L 130
+
Sbjct: 202 M 202
>gi|154332671|ref|XP_001562152.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059600|emb|CAM37184.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1248
Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 88 CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRR---ALLEEVTSMPRFMDDE 144
C SR+L ID G + +M +E+ KAE +D + LL V RF E
Sbjct: 533 CNSRQLAVIDLGGVTRLYSMEREKFSLVPFKAEPIDGVELKDVWNLLWAVDDPYRFAVME 592
Query: 145 ADSAMVWKYDKSYDPIYSTEILKCSNSSRFESL 177
+V+ + + +P+ S C+N RF+SL
Sbjct: 593 KTRMLVYNHGVAEEPVQS-----CANLCRFKSL 620
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 60 KPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQP 114
K K K + + S F +FME F E ++ + + + KWK+MS+ E+ P
Sbjct: 34 KGKAAKDPNKPKRPPSAFFVFMEDFRKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAP 93
Query: 115 YVIKAEMLDAAHRRAL 130
YV KAE A + + +
Sbjct: 94 YVAKAEKRKADYEKTM 109
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F + ++ + + + G +KWK+MS+ E+ PYV KAE
Sbjct: 49 SAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAE 99
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 51 VKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETFVETC-----GSRELIDIDQKGFEKWK 105
K KG + P K+ + S F +FME F ET ++ + + + G +KWK
Sbjct: 22 TKGGKGAAKDPNKPKRPA------SAFFVFMEEFRETYKKEHPNNKSVAAVGKAGGQKWK 75
Query: 106 NMSKEERQPYVIKAE 120
++S E+ PY KA+
Sbjct: 76 SLSDSEKAPYQAKAD 90
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 75 SPFRIFMETFVE-----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + ++WK++++ ++ PYV KA L A + R
Sbjct: 47 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNRP 106
Query: 130 LL 131
LL
Sbjct: 107 LL 108
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETCG-----SRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F E ++ + + + G +KWK++S E+ PYV KA+
Sbjct: 48 SAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKAD 98
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,119,983,493
Number of Sequences: 23463169
Number of extensions: 115587070
Number of successful extensions: 291791
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 291686
Number of HSP's gapped (non-prelim): 138
length of query: 205
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 69
effective length of database: 9,168,204,383
effective search space: 632606102427
effective search space used: 632606102427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)