BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037983
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 43/172 (25%)
Query: 2 ANQPRTRKRVHA---------IRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKVK 52
+N P+ RKRV A +RRA DGSAF C+ C V +AL+ MH C K +V
Sbjct: 8 SNAPKQRKRVEAETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVN 67
Query: 53 RFKGVCE--------------------KPKLVKQ-------DSYSDQTRSP---FRIFME 82
V E KPK +K+ S S++ + P F IFM
Sbjct: 68 LEAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMS 127
Query: 83 TFVETCGSRE----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
F +T S D + G EKWK++++EE++ Y+ KA L A + ++L
Sbjct: 128 DFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL 179
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 47 VKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGF 101
K K KG + P K+ S S F +FME F E ++ + + + G
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPS------SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGG 71
Query: 102 EKWKNMSKEERQPYVIKAE 120
EKWK++S E+ PYV KA+
Sbjct: 72 EKWKSLSDSEKAPYVAKAD 90
>sp|Q941D1|HMG12_ARATH High mobility group B protein 12 OS=Arabidopsis thaliana GN=HMGB12
PE=2 SV=1
Length = 149
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 17 APDGSAFEKCDR--CEAMVPIALVDMHECEAKVKNKV--KRFKGVCEKPKLVKQDSYSDQ 72
+ D S F +C+ C +P+ LV MH C A + + F + K S
Sbjct: 6 SEDSSIFARCEDVDCNKKIPVELVRMHICYAMFHRTLAARGFGTQTQAKKKPTNKKKSTT 65
Query: 73 TRSPFRIFMETF---VETCGSRELIDIDQK-GFEKWKNMSKEERQPYVIKA 119
+ + F +FM F T + L+ K G+E WK+M+++E++ Y+ KA
Sbjct: 66 SLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKA 116
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVET-----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F ET ++ + + + +KWK++S E+ PYV KAE
Sbjct: 43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETFVE-----TCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FM F E ++ + + + E+WK++S+ E+ PYV KA L + +A
Sbjct: 47 SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKA 106
Query: 130 L 130
+
Sbjct: 107 I 107
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 102 EKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMD--DEADSA 148
EKWKN+S EE++PY KA+ ++ + P +D +E+DSA
Sbjct: 594 EKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
SPF +F++ F + ++ + ++ + +KWK M++EER P+V K++
Sbjct: 39 SPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89
>sp|P52997|PANB_SYNY3 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=panB PE=3 SV=1
Length = 260
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 30 EAMVPIALVDMHECEAKVKNKVKRFKGVCEKPKLVKQDSYSDQTRSPFRIFMET 83
E +P++L M A VK V+R VC+ P L Q+S + S R+ ET
Sbjct: 54 ETTLPVSLDTMIHHTAAVKRGVQRALVVCDLPFLTYQESPAQAMGSAGRVLQET 107
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETFVETC-----GSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +FME F +T ++ + + + G +KWK ++ E+ P++ KAE
Sbjct: 41 SAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAE 91
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEM-------LDAAHRRALLEEVTSMP 138
+I +K E+W+ M+ EE+QPYV ++++ AA+R A +V S P
Sbjct: 587 EIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGP 637
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129
S F +FME F + ++ + + + ++WK++S+ ++ PYV KA L + +A
Sbjct: 46 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKA 105
Query: 130 L 130
+
Sbjct: 106 I 106
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 58 CEKPKLVKQDSYSDQTRSPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEER 112
K K K + + S F +FME F E ++ + + + KWK MS E+
Sbjct: 32 AGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEK 91
Query: 113 QPYVIKAE 120
PYV K+E
Sbjct: 92 APYVAKSE 99
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 93 LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132
+ D+ +K E W N+S E+QPYV KA L + + + +
Sbjct: 120 IGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVAD 159
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 50 KVKRFKGVCEKP--------KLVKQDSYSDQTRSP--FRIFMETF-----VETCGSRELI 94
KV + K EKP K K+D + R+P F +F+E F E + +
Sbjct: 24 KVGKRKAPAEKPTKRETRKEKKAKKDPNKPK-RAPSAFFVFLEDFRVTFKKENPNVKAVS 82
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130
+ + G +KWK+MS+ E+ PY KA A + + +
Sbjct: 83 AVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 118
>sp|P40656|SOX14_DROME Putative transcription factor SOX-14 OS=Drosophila melanogaster
GN=Sox14 PE=2 SV=3
Length = 669
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAH 126
+I ++ +W+ +SK+++QPY+I+AE L H
Sbjct: 216 EISKELGRRWQLLSKDDKQPYIIEAEKLRKLH 247
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 75 SPFRIFMETF-----VETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120
S F +F+E F + ++ + + + +WK M+ E++ PYV KAE
Sbjct: 40 SAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 95 DIDQKGFEKWKNMSKEERQPYVIKAEM 121
+I +K E W+ MS EE+QPY+ +A++
Sbjct: 586 EIAKKLGEMWQKMSGEEKQPYIQQAQV 612
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 93 LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMP 138
+ D+ +K E WKNMS+++++ + +AE + +A+ E TS P
Sbjct: 568 ITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDYEKAMKEYNTSAP 613
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 75 SPFRIFMETFVETCGSRE----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRR 128
S F +F F S + D+ +K E WKN++ E+QPY+ +A L + +
Sbjct: 97 SGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
>sp|Q1RJR4|Y319_RICBR Putative ankyrin repeat protein RBE_0319 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0319 PE=4 SV=1
Length = 719
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 21/134 (15%)
Query: 42 ECEAKVKNKVKRFKGVCEKPKLVKQ-----DSYSDQTRSPFRIFMETFVETCGSRELIDI 96
E E K +K+ + EK ++ Q ++++ Q F+ E + G+RE+ ++
Sbjct: 117 ELEKKYLDKLNQATSSDEKKIIIDQHKLEIEAFNKQIAQDFQKKQE---DLRGNREITNV 173
Query: 97 DQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKY--- 153
++ K ++KEE +PY+ +L+ L+E + ++DD+ D +V K
Sbjct: 174 EEHKLVKEGIVTKEEIEPYLSNYPLLN-----TLVEYI-----YLDDDQDIPLVKKLFEI 223
Query: 154 DKSYDPIYSTEILK 167
+++ P ST+ LK
Sbjct: 224 ARNFYPNNSTQELK 237
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 LIDIDQKGFEKWKNMSKEERQPYVIKAEML 122
+ D+ +K E W N+S E+QPY+ KA L
Sbjct: 120 IGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,646,356
Number of Sequences: 539616
Number of extensions: 2819056
Number of successful extensions: 7108
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7083
Number of HSP's gapped (non-prelim): 40
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)