Query 037983
Match_columns 205
No_of_seqs 153 out of 832
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 1.9E-21 4.2E-26 147.4 8.9 73 62-134 15-93 (94)
2 PF09011 HMG_box_2: HMG-box do 99.7 3.6E-18 7.9E-23 122.7 7.3 67 67-133 1-72 (73)
3 cd01390 HMGB-UBF_HMG-box HMGB- 99.7 4.8E-18 1E-22 117.3 6.9 62 70-131 1-66 (66)
4 cd01389 MATA_HMG-box MATA_HMG- 99.7 3E-18 6.5E-23 124.1 5.5 65 69-133 1-69 (77)
5 PF00505 HMG_box: HMG (high mo 99.7 1.3E-17 2.8E-22 116.3 6.7 65 70-134 1-69 (69)
6 COG5648 NHP6B Chromatin-associ 99.7 2.2E-17 4.8E-22 142.3 7.4 84 62-145 63-150 (211)
7 smart00398 HMG high mobility g 99.7 4E-17 8.6E-22 112.9 7.1 65 69-133 1-69 (70)
8 cd01388 SOX-TCF_HMG-box SOX-TC 99.7 2.7E-17 5.9E-22 117.9 5.8 64 70-133 2-69 (72)
9 KOG0381 HMG box-containing pro 99.7 2.6E-16 5.7E-21 117.0 8.4 72 66-137 17-95 (96)
10 cd00084 HMG-box High Mobility 99.7 2.3E-16 5.1E-21 107.9 6.9 61 70-130 1-65 (66)
11 KOG0526 Nucleosome-binding fac 99.6 1.2E-15 2.7E-20 145.8 7.0 74 60-135 526-601 (615)
12 KOG0527 HMG-box transcription 99.6 5.4E-15 1.2E-19 135.0 6.7 71 64-134 57-131 (331)
13 KOG3248 Transcription factor T 98.8 3.4E-09 7.3E-14 97.8 5.5 61 68-128 190-254 (421)
14 KOG4715 SWI/SNF-related matrix 98.6 9.6E-08 2.1E-12 87.8 7.4 74 62-135 57-134 (410)
15 KOG0528 HMG-box transcription 98.6 3.1E-08 6.6E-13 94.6 2.7 63 65-127 321-387 (511)
16 KOG2746 HMG-box transcription 98.0 5.5E-06 1.2E-10 81.8 4.5 65 65-129 177-247 (683)
17 PF14887 HMG_box_5: HMG (high 97.8 3.5E-05 7.5E-10 58.4 5.3 69 69-137 3-74 (85)
18 PF06382 DUF1074: Protein of u 97.5 0.00012 2.7E-09 62.6 4.8 50 74-123 83-132 (183)
19 COG5648 NHP6B Chromatin-associ 96.2 0.0047 1E-07 54.1 3.8 64 68-131 142-209 (211)
20 PF04690 YABBY: YABBY protein; 92.1 0.24 5.2E-06 42.2 4.5 42 67-108 119-164 (170)
21 PF04769 MAT_Alpha1: Mating-ty 89.4 1 2.2E-05 39.1 6.0 55 64-120 38-92 (201)
22 TIGR03481 HpnM hopanoid biosyn 83.5 1.8 3.9E-05 36.9 4.4 45 92-136 65-111 (198)
23 COG4049 Uncharacterized protei 79.6 0.52 1.1E-05 34.1 -0.2 24 10-33 3-27 (65)
24 PRK15117 ABC transporter perip 79.0 3.1 6.7E-05 35.9 4.3 44 93-136 70-115 (211)
25 PF05494 Tol_Tol_Ttg2: Toluene 75.8 2.8 6.2E-05 34.1 3.0 42 94-135 41-84 (170)
26 PF08073 CHDNT: CHDNT (NUC034) 72.0 3.6 7.7E-05 29.3 2.3 35 74-108 13-51 (55)
27 PRK10778 dksA RNA polymerase-b 69.2 2.5 5.5E-05 35.1 1.3 25 13-38 102-126 (151)
28 TIGR02420 dksA RNA polymerase- 67.5 2.7 5.8E-05 32.6 1.0 25 13-38 71-95 (110)
29 TIGR02890 spore_yteA sporulati 60.4 4.1 8.9E-05 34.1 0.9 25 13-38 77-101 (159)
30 PHA00080 DksA-like zinc finger 56.2 6.4 0.00014 28.9 1.3 24 15-38 23-46 (72)
31 COG2854 Ttg2D ABC-type transpo 56.1 14 0.0003 32.4 3.5 42 96-137 76-118 (202)
32 cd07081 ALDH_F20_ACDH_EutE-lik 52.3 29 0.00063 33.0 5.3 40 94-133 5-44 (439)
33 TIGR02419 C4_traR_proteo phage 50.4 9.7 0.00021 27.2 1.4 19 19-37 27-45 (63)
34 cd07133 ALDH_CALDH_CalB Conife 46.4 42 0.00091 31.5 5.3 40 94-133 4-43 (434)
35 cd07132 ALDH_F3AB Aldehyde deh 46.1 40 0.00086 31.8 5.1 41 94-134 4-44 (443)
36 PRK11019 hypothetical protein; 45.8 11 0.00024 28.9 1.2 22 15-36 28-49 (88)
37 TIGR01031 rpmF_bact ribosomal 45.0 9.4 0.0002 26.7 0.6 20 14-33 13-36 (55)
38 cd07087 ALDH_F3-13-14_CALDH-li 44.5 49 0.0011 30.9 5.4 41 94-134 4-44 (426)
39 cd07122 ALDH_F20_ACDH Coenzyme 40.8 62 0.0013 30.8 5.6 40 94-133 5-44 (436)
40 cd07085 ALDH_F6_MMSDH Methylma 40.7 59 0.0013 30.8 5.4 40 94-133 44-83 (478)
41 cd07084 ALDH_KGSADH-like ALDH 39.5 64 0.0014 30.4 5.4 41 94-134 5-45 (442)
42 PF09556 RE_HaeIII: HaeIII res 39.1 15 0.00032 34.1 1.1 71 95-170 151-225 (300)
43 cd07077 ALDH-like NAD(P)+-depe 39.0 53 0.0012 30.2 4.7 37 96-132 2-38 (397)
44 PRK13968 putative succinate se 38.9 63 0.0014 30.6 5.3 40 94-133 35-74 (462)
45 cd07152 ALDH_BenzADH NAD-depen 38.8 73 0.0016 29.7 5.6 41 94-134 19-59 (443)
46 PRK09706 transcriptional repre 37.9 86 0.0019 24.5 5.2 42 96-137 88-129 (135)
47 cd07150 ALDH_VaniDH_like Pseud 37.8 67 0.0015 29.9 5.2 40 94-133 27-66 (451)
48 PF12650 DUF3784: Domain of un 37.6 20 0.00044 26.8 1.4 17 102-118 24-40 (97)
49 cd07099 ALDH_DDALDH Methylomon 37.3 71 0.0015 29.8 5.3 40 94-133 24-63 (453)
50 cd07137 ALDH_F3FHI Plant aldeh 37.0 76 0.0016 29.9 5.5 40 94-133 5-44 (432)
51 PRK00197 proA gamma-glutamyl p 36.8 70 0.0015 30.0 5.2 41 94-134 10-50 (417)
52 PRK11241 gabD succinate-semial 36.6 70 0.0015 30.7 5.3 39 95-133 55-93 (482)
53 PF10675 DUF2489: Protein of u 36.6 76 0.0016 25.7 4.7 36 101-136 95-130 (131)
54 cd07135 ALDH_F14-YMR110C Sacch 36.1 68 0.0015 30.2 5.0 40 94-133 11-50 (436)
55 cd07104 ALDH_BenzADH-like ALDH 36.1 78 0.0017 29.2 5.3 41 94-134 6-46 (431)
56 cd07136 ALDH_YwdH-P39616 Bacil 36.1 76 0.0017 30.2 5.4 41 94-134 4-44 (449)
57 cd07101 ALDH_SSADH2_GabD2 Myco 36.0 75 0.0016 29.8 5.3 40 95-134 25-64 (454)
58 cd07106 ALDH_AldA-AAD23400 Str 35.7 79 0.0017 29.5 5.3 41 94-134 25-65 (446)
59 cd07100 ALDH_SSADH1_GabD1 Myco 35.2 80 0.0017 29.4 5.3 40 94-133 5-44 (429)
60 cd07108 ALDH_MGR_2402 Magnetos 34.7 82 0.0018 29.5 5.3 40 94-133 25-64 (457)
61 PRK13252 betaine aldehyde dehy 34.5 80 0.0017 30.0 5.3 41 94-134 50-90 (488)
62 PF13875 DUF4202: Domain of un 34.4 57 0.0012 28.3 3.9 38 75-112 130-168 (185)
63 cd07129 ALDH_KGSADH Alpha-Keto 34.3 79 0.0017 29.8 5.2 39 95-133 6-44 (454)
64 PF00171 Aldedh: Aldehyde dehy 34.2 76 0.0017 29.7 5.0 40 94-133 35-74 (462)
65 cd07098 ALDH_F15-22 Aldehyde d 34.1 92 0.002 29.2 5.5 39 95-133 25-63 (465)
66 COG1012 PutA NAD-dependent ald 34.0 87 0.0019 30.1 5.4 40 95-134 43-82 (472)
67 cd07138 ALDH_CddD_SSP0762 Rhod 33.7 93 0.002 29.3 5.5 41 94-134 42-82 (466)
68 PRK11903 aldehyde dehydrogenas 33.5 80 0.0017 30.7 5.2 40 94-133 46-86 (521)
69 cd07131 ALDH_AldH-CAJ73105 Unc 33.4 89 0.0019 29.4 5.3 40 94-133 43-82 (478)
70 PRK13473 gamma-aminobutyraldeh 33.3 90 0.002 29.4 5.4 40 94-133 45-84 (475)
71 cd07095 ALDH_SGSD_AstD N-succi 33.2 90 0.002 29.3 5.3 40 94-133 6-45 (431)
72 TIGR01780 SSADH succinate-semi 33.2 89 0.0019 29.3 5.3 40 94-133 25-64 (448)
73 cd07559 ALDH_ACDHII_AcoD-like 33.1 1E+02 0.0022 29.4 5.7 41 94-134 44-84 (480)
74 TIGR03374 ABALDH 1-pyrroline d 32.7 89 0.0019 29.8 5.3 39 95-133 45-83 (472)
75 cd07105 ALDH_SaliADH Salicylal 32.5 80 0.0017 29.4 4.8 39 95-133 7-45 (432)
76 cd07121 ALDH_EutE Ethanolamine 32.4 92 0.002 29.4 5.2 40 94-133 10-49 (429)
77 PF06945 DUF1289: Protein of u 32.3 43 0.00094 22.8 2.3 21 102-122 28-48 (51)
78 cd07092 ALDH_ABALDH-YdcW Esche 32.2 1.1E+02 0.0023 28.5 5.6 40 94-133 25-64 (450)
79 PF01258 zf-dskA_traR: Prokary 32.1 23 0.0005 22.1 0.9 16 23-38 3-18 (36)
80 TIGR01722 MMSDH methylmalonic 31.9 96 0.0021 29.4 5.3 40 94-133 44-83 (477)
81 cd07147 ALDH_F21_RNP123 Aldehy 31.9 98 0.0021 28.9 5.3 39 94-132 27-65 (452)
82 PRK13715 conjugal transfer pro 31.9 26 0.00057 25.8 1.2 20 19-38 30-49 (73)
83 PLN02174 aldehyde dehydrogenas 31.8 88 0.0019 30.3 5.1 40 94-133 16-55 (484)
84 TIGR01238 D1pyr5carbox3 delta- 31.8 94 0.002 30.0 5.3 40 94-133 80-119 (500)
85 cd07130 ALDH_F7_AASADH NAD+-de 31.8 98 0.0021 29.3 5.4 39 94-132 40-78 (474)
86 cd07110 ALDH_F10_BADH Arabidop 31.4 99 0.0021 28.9 5.3 41 94-134 25-65 (456)
87 cd07102 ALDH_EDX86601 Uncharac 31.4 85 0.0019 29.2 4.8 39 94-132 24-62 (452)
88 PLN02315 aldehyde dehydrogenas 31.2 98 0.0021 30.0 5.3 40 94-133 62-101 (508)
89 cd07097 ALDH_KGSADH-YcbD Bacil 31.2 99 0.0021 29.2 5.3 41 94-134 43-83 (473)
90 cd07079 ALDH_F18-19_ProA-GPR G 31.0 86 0.0019 29.2 4.8 40 94-133 4-43 (406)
91 TIGR03240 arg_catab_astD succi 30.9 99 0.0021 29.4 5.2 40 94-133 41-80 (484)
92 PRK10236 hypothetical protein; 30.7 46 0.00099 30.0 2.7 25 96-120 118-142 (237)
93 cd07115 ALDH_HMSADH_HapE Pseud 30.6 1E+02 0.0022 28.8 5.2 40 94-133 25-64 (453)
94 cd07151 ALDH_HBenzADH NADP+-de 30.5 1E+02 0.0022 29.0 5.3 40 94-133 38-77 (465)
95 TIGR02518 EutH_ACDH acetaldehy 30.3 1.1E+02 0.0024 29.5 5.5 39 94-132 14-52 (488)
96 TIGR01804 BADH glycine betaine 30.3 1E+02 0.0022 29.0 5.2 40 94-133 41-80 (467)
97 cd07086 ALDH_F7_AASADH-like NA 30.2 1E+02 0.0023 29.2 5.2 40 94-133 41-80 (478)
98 PRK09406 gabD1 succinic semial 30.1 90 0.002 29.5 4.8 40 94-133 29-68 (457)
99 PLN02419 methylmalonate-semial 30.1 96 0.0021 31.1 5.2 39 95-133 158-196 (604)
100 TIGR00407 proA gamma-glutamyl 30.0 62 0.0013 30.4 3.7 36 98-133 2-37 (398)
101 TIGR03216 OH_muco_semi_DH 2-hy 30.0 96 0.0021 29.4 5.0 39 95-133 43-82 (481)
102 PLN02278 succinic semialdehyde 29.9 1E+02 0.0022 29.5 5.2 40 94-133 68-107 (498)
103 cd07145 ALDH_LactADH_F420-Bios 29.8 1.1E+02 0.0024 28.6 5.3 41 94-134 27-67 (456)
104 TIGR01236 D1pyr5carbox1 delta- 29.6 90 0.0019 30.4 4.8 39 94-132 75-114 (533)
105 cd07093 ALDH_F8_HMSADH Human a 29.5 1.1E+02 0.0025 28.4 5.3 40 94-133 25-64 (455)
106 PLN02203 aldehyde dehydrogenas 28.8 1.2E+02 0.0025 29.4 5.4 41 94-134 12-52 (484)
107 cd07088 ALDH_LactADH-AldA Esch 28.8 1.1E+02 0.0025 28.6 5.2 39 94-132 41-79 (468)
108 cd07116 ALDH_ACDHII-AcoD Ralst 28.8 1.3E+02 0.0028 28.5 5.6 40 94-133 44-83 (479)
109 PRK09457 astD succinylglutamic 28.6 1.2E+02 0.0025 29.0 5.3 40 94-133 43-82 (487)
110 PLN02418 delta-1-pyrroline-5-c 28.5 1.1E+02 0.0023 31.3 5.2 40 94-133 300-339 (718)
111 cd07107 ALDH_PhdK-like Nocardi 28.3 1.2E+02 0.0026 28.4 5.3 40 94-133 25-64 (456)
112 TIGR02299 HpaE 5-carboxymethyl 28.2 1.2E+02 0.0026 28.8 5.3 39 94-132 44-82 (488)
113 COG1734 DksA DnaK suppressor p 27.9 29 0.00062 28.0 0.9 24 13-37 71-94 (120)
114 cd07111 ALDH_F16 Aldehyde dehy 27.6 1.2E+02 0.0026 29.0 5.2 39 94-132 65-103 (480)
115 cd07083 ALDH_P5CDH ALDH subfam 27.5 1.1E+02 0.0023 29.4 4.9 39 94-132 61-99 (500)
116 cd07128 ALDH_MaoC-N N-terminal 27.4 1E+02 0.0022 30.0 4.7 40 94-133 42-82 (513)
117 PRK15398 aldehyde dehydrogenas 27.3 1.2E+02 0.0027 29.0 5.2 40 94-133 42-81 (465)
118 TIGR01237 D1pyr5carbox2 delta- 27.0 1.1E+02 0.0024 29.4 4.8 39 94-132 75-113 (511)
119 cd07094 ALDH_F21_LactADH-like 26.9 1.3E+02 0.0029 28.0 5.3 41 94-134 27-67 (453)
120 PF06244 DUF1014: Protein of u 26.2 76 0.0016 25.8 3.1 44 66-109 69-116 (122)
121 KOG3032 Uncharacterized conser 25.9 67 0.0014 29.3 2.9 46 6-51 18-63 (264)
122 cd07149 ALDH_y4uC Uncharacteri 25.7 1.4E+02 0.0031 27.6 5.2 39 94-132 27-65 (453)
123 cd06534 ALDH-SF NAD(P)+-depend 25.6 1.3E+02 0.0028 27.0 4.7 38 96-133 2-39 (367)
124 cd07125 ALDH_PutA-P5CDH Delta( 25.5 1.4E+02 0.003 28.8 5.3 40 94-133 75-114 (518)
125 PF12230 PRP21_like_P: Pre-mRN 25.4 23 0.00051 30.4 0.0 31 18-48 163-193 (229)
126 cd07103 ALDH_F5_SSADH_GabD Mit 25.4 1.5E+02 0.0033 27.5 5.4 38 95-132 26-63 (451)
127 cd07134 ALDH_AlkH-like Pseudom 25.1 1.4E+02 0.0031 28.0 5.1 40 95-134 5-44 (433)
128 cd07117 ALDH_StaphAldA1 Unchar 25.0 1.3E+02 0.0027 28.7 4.8 39 95-133 45-83 (475)
129 TIGR00787 dctP tripartite ATP- 25.0 1.3E+02 0.0028 25.7 4.5 29 101-129 213-241 (257)
130 cd07090 ALDH_F9_TMBADH NAD+-de 24.9 1.5E+02 0.0033 27.7 5.3 40 94-133 25-64 (457)
131 COG4830 RPS26B Ribosomal prote 24.9 27 0.00059 27.9 0.3 16 21-36 18-33 (108)
132 cd07124 ALDH_PutA-P5CDH-RocA D 24.9 1.3E+02 0.0028 28.9 4.9 40 94-133 75-114 (512)
133 PLN00412 NADP-dependent glycer 24.7 1.7E+02 0.0036 28.1 5.6 40 94-133 59-98 (496)
134 PF03480 SBP_bac_7: Bacterial 24.5 1.2E+02 0.0026 26.3 4.2 32 101-132 213-244 (286)
135 PF11304 DUF3106: Protein of u 24.4 2.7E+02 0.0058 21.6 5.8 23 97-119 13-35 (107)
136 PF08367 M16C_assoc: Peptidase 24.4 1.3E+02 0.0027 26.1 4.4 32 94-125 13-44 (248)
137 cd07078 ALDH NAD(P)+ dependent 24.3 1.8E+02 0.0038 26.7 5.5 40 94-133 4-43 (432)
138 PRK12751 cpxP periplasmic stre 23.9 1.6E+02 0.0034 24.8 4.7 32 95-126 118-149 (162)
139 PRK09407 gabD2 succinic semial 23.7 1.6E+02 0.0034 28.5 5.3 40 94-133 60-99 (524)
140 PF11519 DUF3222: Protein of u 23.6 31 0.00067 25.7 0.3 21 16-36 25-45 (74)
141 cd07089 ALDH_CddD-AldA-like Rh 23.4 1.6E+02 0.0034 27.8 5.1 40 94-133 25-65 (459)
142 PRK11563 bifunctional aldehyde 23.0 1.4E+02 0.0031 30.0 4.9 40 94-133 46-86 (675)
143 smart00734 ZnF_Rad18 Rad18-lik 22.9 41 0.00089 20.0 0.7 18 25-42 3-20 (26)
144 cd07123 ALDH_F4-17_P5CDH Delta 22.6 1.5E+02 0.0032 28.8 4.8 39 95-133 76-115 (522)
145 PRK03137 1-pyrroline-5-carboxy 22.4 1.5E+02 0.0033 28.5 4.8 39 95-133 80-118 (514)
146 PRK12750 cpxP periplasmic repr 22.2 2.7E+02 0.0059 23.4 5.8 37 95-131 125-161 (170)
147 PF13240 zinc_ribbon_2: zinc-r 22.0 45 0.00098 19.3 0.8 12 19-32 11-22 (23)
148 PF02591 DUF164: Putative zinc 21.5 62 0.0013 21.9 1.5 27 12-38 6-37 (56)
149 cd07109 ALDH_AAS00426 Uncharac 21.5 2.2E+02 0.0048 26.6 5.7 41 94-134 25-66 (454)
150 PRK06424 transcription factor; 21.5 1.2E+02 0.0025 25.1 3.4 20 26-45 3-28 (144)
151 cd07118 ALDH_SNDH Gluconobacte 20.8 1.3E+02 0.0028 28.3 4.0 39 96-134 27-67 (454)
152 cd07113 ALDH_PADH_NahF Escheri 20.7 1.6E+02 0.0035 27.9 4.6 39 95-133 44-83 (477)
153 PLN02467 betaine aldehyde dehy 20.7 1.6E+02 0.0035 28.3 4.7 39 95-133 52-95 (503)
154 PTZ00381 aldehyde dehydrogenas 20.7 1.9E+02 0.0041 27.9 5.1 40 94-133 13-52 (493)
155 PF02919 Topoisom_I_N: Eukaryo 20.6 2.2E+02 0.0048 25.4 5.1 48 79-126 63-124 (215)
156 PRK12286 rpmF 50S ribosomal pr 20.2 48 0.001 23.3 0.8 23 14-36 15-40 (57)
157 PF01352 KRAB: KRAB box; Inte 20.0 1.1E+02 0.0023 20.1 2.3 20 101-120 12-31 (41)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=147.37 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh------hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL------IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP------~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
++.+||++||||+||||+|++++|..+...|| ++|+++||++|++||++||++|+++|++++++|..+|.+|.
T Consensus 15 k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~ 93 (94)
T PTZ00199 15 RKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA 93 (94)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999876654 68999999999999999999999999999999999999985
No 2
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.75 E-value=3.6e-18 Score=122.74 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=59.5
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCC-----ChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSR-----ELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~-----nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
|++||||+|||++|+++++..++.. +..|+++.+|+.|++||++||.+|+++|++++++|..+|.+|
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~ 72 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEW 72 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999987644 458999999999999999999999999999999999999987
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.74 E-value=4.8e-18 Score=117.35 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=58.4
Q ss_pred CCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH
Q 037983 70 SDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL 131 (205)
Q Consensus 70 PKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~ 131 (205)
||||+|||++|++++|.+++..+| .+|++++|++|++||++||++|.+.|++++++|..+|.
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~~ 66 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEMK 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999987664 89999999999999999999999999999999999873
No 4
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.74 E-value=3e-18 Score=124.13 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 69 YSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 69 aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.||||+||||+|++++|.+++..|| .||++++|++|+.||++||++|.++|++++++|.+++.+|
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Y 69 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDY 69 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4899999999999999999987766 8999999999999999999999999999999999998776
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.72 E-value=1.3e-17 Score=116.34 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 70 SDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 70 PKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
||||+|||++|+++++..++..|| .+|++++|++|++||++||++|.+.|.+++++|.++|..|.
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999987766 79999999999999999999999999999999999999873
No 6
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.70 E-value=2.2e-17 Score=142.32 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
++.+|||+||||+||||+|+++.|.++...+| .+|++++||+|++||++||+||+..|..++++|..++.+|...+
T Consensus 63 r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~~k~ 142 (211)
T COG5648 63 RKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKKL 142 (211)
T ss_pred HHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhhccc
Confidence 35679999999999999999999999988877 89999999999999999999999999999999999999999999
Q ss_pred CCCCChhH
Q 037983 138 PRFMDDEA 145 (205)
Q Consensus 138 p~e~~dea 145 (205)
|+.....+
T Consensus 143 ~~~~~~~~ 150 (211)
T COG5648 143 PNKAPIGP 150 (211)
T ss_pred CCCCCCch
Confidence 87755443
No 7
>smart00398 HMG high mobility group.
Probab=99.70 E-value=4e-17 Score=112.92 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=60.6
Q ss_pred CCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 69 YSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 69 aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+||||+|||++|++++|..++..+| .+|++++|++|+.||++||++|.++|++++++|.+++..|
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y 69 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEY 69 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999876554 8999999999999999999999999999999999999876
No 8
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.69 E-value=2.7e-17 Score=117.92 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=59.3
Q ss_pred CCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 70 SDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 70 PKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.|||+||||+|+++.|.+++..|| .||++++|++|+.||++||++|.++|+.++++|.+++-.|
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y 69 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDY 69 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 589999999999999999887776 7999999999999999999999999999999999986554
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.67 E-value=2.6e-16 Score=117.00 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=66.9
Q ss_pred CC--CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH-HHHhcC
Q 037983 66 QD--SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL-EEVTSM 137 (205)
Q Consensus 66 Dp--~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~-e~~k~l 137 (205)
|| ++||||+||||+|++++|..++..|| .||++++|++|++|+++||++|+..|..++++|..+|. +|..++
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67 59999999999999999999998887 69999999999999999999999999999999999999 776554
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.66 E-value=2.3e-16 Score=107.92 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=57.1
Q ss_pred CCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHH
Q 037983 70 SDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRAL 130 (205)
Q Consensus 70 PKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem 130 (205)
||||+|||++|++++|..++..+| .+|++++|++|+.||+++|++|.++|.+++..|.+++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999876654 8999999999999999999999999999999999875
No 11
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.60 E-value=1.2e-15 Score=145.76 Aligned_cols=74 Identities=22% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCCCChHHhHHHHhHHHhcCC--ChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 60 KPKLVKQDSYSDQTRSPFRIFMETFVETCGSR--ELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 60 ~~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~--nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
++|+.||||+|||++||||+|++.-|..+|.. ..+||+|.+|++||.||. |++|+++|+++|++|+++|.+|..
T Consensus 526 ~~kk~kdpnapkra~sa~m~w~~~~r~~ik~dgi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk~ 601 (615)
T KOG0526|consen 526 KGKKKKDPNAPKRATSAYMLWLNASRESIKEDGISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYKN 601 (615)
T ss_pred CcccCCCCCCCccchhHHHHHHHhhhhhHhhcCchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhcC
Confidence 45778999999999999999999999999866 448999999999999999 999999999999999999999973
No 12
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.55 E-value=5.4e-15 Score=134.95 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.....||||||||+|.+..|+++..+|| .||||.||.+||.|+++||.||++.|+++++.|.+|-=.|.
T Consensus 57 k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYK 131 (331)
T KOG0527|consen 57 KTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYK 131 (331)
T ss_pred CCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcc
Confidence 346789999999999999999999998888 89999999999999999999999999999999999866553
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=98.85 E-value=3.4e-09 Score=97.84 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCCCCCChHHhHHHHhHHHhcC----CChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGS----RELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRR 128 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~----~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~k 128 (205)
...|+|+||||+||+++|..+-+ +..++|.++||.+|..||-||..+|.++|..+++-|.+
T Consensus 190 phiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~q 254 (421)
T KOG3248|consen 190 PHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQ 254 (421)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999988742 23389999999999999999999999999999887754
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=98.61 E-value=9.6e-08 Score=87.85 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
.+.|-|.+|-+|+-+||.|......+++..|| =||+|++|.+|+.|+++||+-|++.++..|.+|.+.|+.|..
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~ 134 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHN 134 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35667889999999999999999999999999 499999999999999999999999999999999999998864
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.56 E-value=3.1e-08 Score=94.55 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=54.0
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHH
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHR 127 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~ 127 (205)
.-++.-||||||||.|.++-|.++-..-| ..|+|+||-+||.||-.||+||++.-+.+-..|.
T Consensus 321 ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~Hl 387 (511)
T KOG0528|consen 321 SSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHL 387 (511)
T ss_pred CCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhh
Confidence 34568899999999999998877754433 7999999999999999999999999999866554
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.00 E-value=5.5e-06 Score=81.79 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCCCCCCCCCChHHhHHHHhH--HH----hcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHH
Q 037983 65 KQDSYSDQTRSPFRIFMETFV--ET----CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~R--k~----~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~ke 129 (205)
.+...-.||||||++|++.+| .. ++++....|++|+||.|-.|.+.||+.|.|+|.+.|+.|-++
T Consensus 177 r~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 177 RDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred CcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 455677899999999999998 33 344444789999999999999999999999999999999985
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.84 E-value=3.5e-05 Score=58.39 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCCCCCChHHhHHHHhHHHhcCCCh---hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 69 YSDQTRSPFRIFMETFVETCGSREL---IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 69 aPKRP~SAF~lF~~e~Rk~~K~~nP---~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
.|-.|.||==+|.+.....+-...+ .-.-+.+...|++|++.||-+|+.+|.++..+|+.+|.++..-.
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~ 74 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKALKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAP 74 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888888999887666543322 22356899999999999999999999999999999999886543
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.53 E-value=0.00012 Score=62.55 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=46.0
Q ss_pred CChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHH
Q 037983 74 RSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLD 123 (205)
Q Consensus 74 ~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K 123 (205)
-+||+.|+.+||..+.+..|.|+...++..|..||+.||..|..++-...
T Consensus 83 nnaYLNFLReFRrkh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~~ 132 (183)
T PF06382_consen 83 NNAYLNFLREFRRKHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPSVR 132 (183)
T ss_pred chHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcchhh
Confidence 57999999999999999999999999999999999999999999766443
No 19
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.24 E-value=0.0047 Score=54.10 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=56.3
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL 131 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~ 131 (205)
.+++.|..+|.-+-+..|.+....++ .+..+++|..|..|++.-|++|++.+..++.+|...+.
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 46778888888888888888877777 68999999999999999999999999999999987653
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=92.06 E-value=0.24 Score=42.18 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=36.3
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCC
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMS 108 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLS 108 (205)
|-+-.|-+|||..||++.-..+|..|| .|..+.+++.|+..+
T Consensus 119 PEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 119 PEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred ccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 344458899999999999999999988 799999999998754
No 21
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=89.39 E-value=1 Score=39.13 Aligned_cols=55 Identities=7% Similarity=0.112 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHH
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAE 120 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~ 120 (205)
......+|||.|+||.|+.-+-.-+......++|.+++..|..=+- |..|.-.|.
T Consensus 38 ~~~~~~~kr~lN~Fm~FRsyy~~~~~~~~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 38 KRSPEKAKRPLNGFMAFRSYYSPIFPPLPQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred cccccccccchhHHHHHHHHHHhhcCCcCHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 3356678999999999999888666665558999999999986433 344444443
No 22
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=83.52 E-value=1.8 Score=36.95 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=38.7
Q ss_pred ChhHHHH-HHHHHhhcCChhhhhhHHHHHHH-HHHHHHHHHHHHHhc
Q 037983 92 ELIDIDQ-KGFEKWKNMSKEERQPYVIKAEM-LDAAHRRALLEEVTS 136 (205)
Q Consensus 92 nP~EIsK-~lGE~WKsLSdeEKkPY~dkA~e-~K~~Y~kem~e~~k~ 136 (205)
+...+++ .+|..|+.+|++||+-|++.... +...|...+..|..+
T Consensus 65 Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 65 DLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3466665 78999999999999999999999 788999999988654
No 23
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=79.63 E-value=0.52 Score=34.14 Aligned_cols=24 Identities=42% Similarity=0.841 Sum_probs=19.5
Q ss_pred hhhhh-hhCCCCCccccchhhcccc
Q 037983 10 RVHAI-RRAPDGSAFEKCDRCEAMV 33 (205)
Q Consensus 10 rv~a~-~Ra~DgSaF~~Ce~c~k~v 33 (205)
|+.|| .+++||-.|-+|..|+..-
T Consensus 3 R~KA~Kv~~RDGE~~lrCPRC~~~F 27 (65)
T COG4049 3 RLKAIKVRDRDGEEFLRCPRCGMVF 27 (65)
T ss_pred cceeeEeeccCCceeeeCCchhHHH
Confidence 34565 6899999999999999743
No 24
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=79.01 E-value=3.1 Score=35.87 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=37.5
Q ss_pred hhHHHH-HHHHHhhcCChhhhhhHHHHHHH-HHHHHHHHHHHHHhc
Q 037983 93 LIDIDQ-KGFEKWKNMSKEERQPYVIKAEM-LDAAHRRALLEEVTS 136 (205)
Q Consensus 93 P~EIsK-~lGE~WKsLSdeEKkPY~dkA~e-~K~~Y~kem~e~~k~ 136 (205)
...+++ .+|..|+.+|+++|+-|.+.-.. +...|...+.+|..+
T Consensus 70 f~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 70 VKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred HHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 355554 88999999999999999999888 678899999998655
No 25
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=75.84 E-value=2.8 Score=34.11 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=32.5
Q ss_pred hHHH-HHHHHHhhcCChhhhhhHHHHHHH-HHHHHHHHHHHHHh
Q 037983 94 IDID-QKGFEKWKNMSKEERQPYVIKAEM-LDAAHRRALLEEVT 135 (205)
Q Consensus 94 ~EIs-K~lGE~WKsLSdeEKkPY~dkA~e-~K~~Y~kem~e~~k 135 (205)
..++ ..+|..|+.||++|++-|.+...+ +...|.+.+..|..
T Consensus 41 ~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 41 ERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp HHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4443 568999999999999999999887 57778888888754
No 26
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.01 E-value=3.6 Score=29.27 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=30.2
Q ss_pred CChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCC
Q 037983 74 RSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMS 108 (205)
Q Consensus 74 ~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLS 108 (205)
.|.|-+|.+..|..+.+.|| ..+..+++.+||.-+
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~ 51 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQ 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 56788999999999999998 688889999998643
No 27
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=69.19 E-value=2.5 Score=35.08 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=20.8
Q ss_pred hhhhCCCCCccccchhhccccchhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~ 38 (205)
||.|-.+|+-.. |+.||..||++-.
T Consensus 102 AL~Ri~~gtYG~-Ce~CGe~I~~~RL 126 (151)
T PRK10778 102 TLKKVEDEDFGY-CESCGVEIGIRRL 126 (151)
T ss_pred HHHHHhCCCCce-eccCCCcccHHHH
Confidence 578888888666 9999999998843
No 28
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=67.51 E-value=2.7 Score=32.60 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.8
Q ss_pred hhhhCCCCCccccchhhccccchhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~ 38 (205)
||.|-.+|+-- .|+.||..||.+-.
T Consensus 71 AL~ri~~g~yG-~C~~Cge~I~~~RL 95 (110)
T TIGR02420 71 ALKRIEDGEYG-YCEECGEEIGLRRL 95 (110)
T ss_pred HHHHHhCCCCC-chhccCCcccHHHH
Confidence 68999999855 59999999998843
No 29
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=60.36 E-value=4.1 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.659 Sum_probs=21.6
Q ss_pred hhhhCCCCCccccchhhccccchhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~ 38 (205)
||.|-.+| .|-.|+.||..||.+-+
T Consensus 77 AL~Ri~~G-~YG~Ce~CGe~I~~~RL 101 (159)
T TIGR02890 77 ALQKIENG-TYGICEVCGKPIPYERL 101 (159)
T ss_pred HHHHHhCC-CCCeecccCCcccHHHH
Confidence 58899999 67899999999999844
No 30
>PHA00080 DksA-like zinc finger domain containing protein
Probab=56.22 E-value=6.4 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.3
Q ss_pred hhCCCCCccccchhhccccchhhh
Q 037983 15 RRAPDGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 15 ~Ra~DgSaF~~Ce~c~k~vpval~ 38 (205)
+....|..+.-|++||..||.+-.
T Consensus 23 ~~~~~~~~~~~C~~Cg~~Ip~~Rl 46 (72)
T PHA00080 23 RNKYQAPSATHCEECGDPIPEARR 46 (72)
T ss_pred HhcccCCCCCEecCCCCcCcHHHH
Confidence 344566677789999999999833
No 31
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.06 E-value=14 Score=32.43 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCChhhhhhHHHHHHH-HHHHHHHHHHHHHhcC
Q 037983 96 IDQKGFEKWKNMSKEERQPYVIKAEM-LDAAHRRALLEEVTSM 137 (205)
Q Consensus 96 IsK~lGE~WKsLSdeEKkPY~dkA~e-~K~~Y~kem~e~~k~l 137 (205)
-...+|.-||..|+++++.|.+.... +...|...|..|..+-
T Consensus 76 a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~ 118 (202)
T COG2854 76 AKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQT 118 (202)
T ss_pred HHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 35788999999999999999999887 7889999999998764
No 32
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=52.34 E-value=29 Score=33.03 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+.+.|+.+|.++|..+..+++++-+++..++...
T Consensus 5 i~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 44 (439)
T cd07081 5 VAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKL 44 (439)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999998864
No 33
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=50.36 E-value=9.7 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=16.5
Q ss_pred CCCccccchhhccccchhh
Q 037983 19 DGSAFEKCDRCEAMVPIAL 37 (205)
Q Consensus 19 DgSaF~~Ce~c~k~vpval 37 (205)
++..|..|+.||..||.+.
T Consensus 27 ~~~s~g~C~~Cg~~Ip~~R 45 (63)
T TIGR02419 27 IGPSLRECEDCGEPIPEAR 45 (63)
T ss_pred cCCCCCeeccCCCcChHHH
Confidence 6677889999999999884
No 34
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=46.44 E-value=42 Score=31.49 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++..+|..+..+++++-+++..++.+.
T Consensus 4 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 43 (434)
T cd07133 4 LERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEA 43 (434)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999998864
No 35
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=46.10 E-value=40 Score=31.80 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++..+|..+..+++..-+++..++.+-.
T Consensus 4 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~ 44 (443)
T cd07132 4 VRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEAL 44 (443)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35678888999999999999999999999999999888643
No 36
>PRK11019 hypothetical protein; Provisional
Probab=45.84 E-value=11 Score=28.91 Aligned_cols=22 Identities=27% Similarity=0.767 Sum_probs=17.4
Q ss_pred hhCCCCCccccchhhccccchh
Q 037983 15 RRAPDGSAFEKCDRCEAMVPIA 36 (205)
Q Consensus 15 ~Ra~DgSaF~~Ce~c~k~vpva 36 (205)
.|-.+|.....|++||..||.+
T Consensus 28 ~r~~~g~syg~C~~CG~~Ip~~ 49 (88)
T PRK11019 28 SELPRGESLTECEECGEPIPEA 49 (88)
T ss_pred hhcccCCcCCeeCcCCCcCcHH
Confidence 4546785555799999999997
No 37
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=45.05 E-value=9.4 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=16.8
Q ss_pred hhhCCCC----Cccccchhhcccc
Q 037983 14 IRRAPDG----SAFEKCDRCEAMV 33 (205)
Q Consensus 14 ~~Ra~Dg----SaF~~Ce~c~k~v 33 (205)
.|||++. .++..|..||...
T Consensus 13 ~RRah~~kl~~p~l~~C~~cG~~~ 36 (55)
T TIGR01031 13 KRRSHDAKLTAPTLVVCPNCGEFK 36 (55)
T ss_pred chhcCcccccCCcceECCCCCCcc
Confidence 6788876 8888999999866
No 38
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=44.49 E-value=49 Score=30.86 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|..++..||..+..+++++-+++..++.+..
T Consensus 4 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (426)
T cd07087 4 VARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAAL 44 (426)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678888999999999999999999999999998888654
No 39
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=40.82 E-value=62 Score=30.83 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.+||.-+..+++++-+++..++...
T Consensus 5 v~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~ 44 (436)
T cd07122 5 VERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKM 44 (436)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999998887753
No 40
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=40.70 E-value=59 Score=30.77 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|+.++.++|..+..+++++-+++..++.+.
T Consensus 44 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 83 (478)
T cd07085 44 VAAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARL 83 (478)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778889999999999999999999999998888764
No 41
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=39.48 E-value=64 Score=30.42 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++.++|.....++.+.-+++..++....
T Consensus 5 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 45 (442)
T cd07084 5 LLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGA 45 (442)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46678888999999999999999999999999998888643
No 42
>PF09556 RE_HaeIII: HaeIII restriction endonuclease; InterPro: IPR019059 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease HaeIII, which recognises and cleaves the double-stranded sequence GG^CC.
Probab=39.11 E-value=15 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHhhhhhcccCCCCC----CccccccccccC
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFMDDEADSAMVWKYDKSYD----PIYSTEILKCSN 170 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~lp~e~~deaDsa~~~~~d~~y~----~~~~~~~~~~~~ 170 (205)
+.-|.-|..|+.++..|-..|+=+-+.-..+-.+.-+++...+ ...-=.=..|++| +|. |+.-.-.+|+||
T Consensus 151 ~~~k~~~~~W~~l~nKe~~vYiPLL~AF~~Ei~r~~~~~~~~i----P~klveYLlG~~D-FYKvIs~d~~r~T~Iq~fN 225 (300)
T PF09556_consen 151 EEEKKEGTKWRELPNKEEDVYIPLLKAFIDEINRLYEKNKNDI----PQKLVEYLLGKYD-FYKVISIDKKRLTQIQAFN 225 (300)
T ss_pred HHHHHcCcchhhcccccccchHHHHHHHHHHHHHHHhhccchh----hHHHHHHHccccc-eeEEEeeccceeEEEEEEe
Confidence 5567888999999999998888766554444433333322222 2222234789998 777 444444555544
No 43
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=39.04 E-value=53 Score=30.25 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 96 IDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 96 IsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.++.+...|..++.++|..+..+++++-+++.+++.+
T Consensus 2 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 38 (397)
T cd07077 2 SAKNAQRTLAVNHDEQRDLIINAIANALYDTRQRLAS 38 (397)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999888775
No 44
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=38.86 E-value=63 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.284 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|++++.++|..+..+++++-+++..++...
T Consensus 35 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 74 (462)
T PRK13968 35 LQLAAAGFRDWRETNIDYRAQKLRDIGKALRARSEEMAQM 74 (462)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557888899999999999999999999999999888864
No 45
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=38.85 E-value=73 Score=29.72 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++.++|..+..++++.-+++..++.+..
T Consensus 19 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 59 (443)
T cd07152 19 AARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWI 59 (443)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35578888899999999999999999999999998887643
No 46
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=37.89 E-value=86 Score=24.51 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 96 IDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 96 IsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
-.+.+-+.|+.|++++++.....+....+.|++-++++.+..
T Consensus 88 ~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (135)
T PRK09706 88 DQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKAR 129 (135)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677999999999999999999999999999988876543
No 47
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=37.84 E-value=67 Score=29.90 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-+++..++.+.
T Consensus 27 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 66 (451)
T cd07150 27 IAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDL 66 (451)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788889999999999999999999999998887764
No 48
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=37.60 E-value=20 Score=26.76 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=13.5
Q ss_pred HHhhcCChhhhhhHHHH
Q 037983 102 EKWKNMSKEERQPYVIK 118 (205)
Q Consensus 102 E~WKsLSdeEKkPY~dk 118 (205)
.=|+.||+|||+.|..+
T Consensus 24 aGyntms~eEk~~~D~~ 40 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKK 40 (97)
T ss_pred hhcccCCHHHHHHhhHH
Confidence 34789999999988654
No 49
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=37.28 E-value=71 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++.++|..+..++++.-+++..++.+.
T Consensus 24 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 63 (453)
T cd07099 24 VARARAAQRAWAALGVEGRAQRLLRWKRALADHADELAEL 63 (453)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557778889999999999999999999998888887763
No 50
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=36.97 E-value=76 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|+.++.++|.-+..+++++-+++..++.+.
T Consensus 5 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 44 (432)
T cd07137 5 VRELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAA 44 (432)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999888753
No 51
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=36.78 E-value=70 Score=29.97 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|..+|.++|..+..+++++-+++..++.+..
T Consensus 10 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 50 (417)
T PRK00197 10 GRRAKAASRKLAQLSTAQKNRALLAIADALEANAAEILAAN 50 (417)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35678888999999999999999999999999999888743
No 52
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=36.63 E-value=70 Score=30.65 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++...+.|+.++-+||..+..++++.-+++..++...
T Consensus 55 ~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (482)
T PRK11241 55 DAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARL 93 (482)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 446777788999999999999999999999999887763
No 53
>PF10675 DUF2489: Protein of unknown function (DUF2489); InterPro: IPR019617 This entry represents bacterial uncharacterised proteins.
Probab=36.60 E-value=76 Score=25.72 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=28.9
Q ss_pred HHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 037983 101 FEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTS 136 (205)
Q Consensus 101 GE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~ 136 (205)
++.|+.|+..|+-.+...=...-.+|+.++.+..++
T Consensus 95 heaRk~L~k~ermk~D~eR~~~E~~~~~~I~~~~~~ 130 (131)
T PF10675_consen 95 HEARKALPKKERMKLDLEREKAEAELEDAILEEAKQ 130 (131)
T ss_pred HHHHHcCCHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999988887777777787777766554
No 54
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=36.12 E-value=68 Score=30.22 Aligned_cols=40 Identities=15% Similarity=-0.018 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-.++.+++.+.
T Consensus 11 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 50 (436)
T cd07135 11 HSRLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEA 50 (436)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788889999999999999999999999999888763
No 55
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=36.08 E-value=78 Score=29.17 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++...+.|+.++.++|..+..++.+.-.++..++.+..
T Consensus 6 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 46 (431)
T cd07104 6 YAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWL 46 (431)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35678888999999999999999999999999988887743
No 56
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=36.06 E-value=76 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|..++..||.....+++++-+++..++.+..
T Consensus 4 v~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 44 (449)
T cd07136 4 VEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEAL 44 (449)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46788889999999999999999999999999999888643
No 57
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=36.01 E-value=75 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
+.++.....|+.++.++|..+..+++.+-.++..++.+..
T Consensus 25 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 64 (454)
T cd07101 25 ARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDLI 64 (454)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577778899999999999999999999999998887643
No 58
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=35.67 E-value=79 Score=29.52 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++...+.|..++.++|..+...+.++-.++..++.+..
T Consensus 25 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 65 (446)
T cd07106 25 VAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLL 65 (446)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35577788999999999999999999999999998887643
No 59
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=35.17 E-value=80 Score=29.40 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++.++|..+..++.+.-+++..++...
T Consensus 5 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 44 (429)
T cd07100 5 LDRAHAAFLAWRKTSFAERAALLRKLADLLRERKDELARL 44 (429)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557778889999999999999999999998888887653
No 60
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=34.67 E-value=82 Score=29.50 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|.-+...+++.-.++..++.+.
T Consensus 25 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (457)
T cd07108 25 VAAAKAAFPEWAATPARERGKLLARIADALEARSEELARL 64 (457)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557888899999999999999999999999999888764
No 61
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=34.48 E-value=80 Score=29.99 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++.++|..+..+++++-+++..++....
T Consensus 50 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 90 (488)
T PRK13252 50 VASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAALE 90 (488)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34577788899999999999999999999999998888643
No 62
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=34.45 E-value=57 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=31.3
Q ss_pred ChHHhHHHHhHHHhcCCCh-hHHHHHHHHHhhcCChhhh
Q 037983 75 SPFRIFMETFVETCGSREL-IDIDQKGFEKWKNMSKEER 112 (205)
Q Consensus 75 SAF~lF~~e~Rk~~K~~nP-~EIsK~lGE~WKsLSdeEK 112 (205)
-+.+.|+..+...+..++- ..+-.++...|+.||+.-+
T Consensus 130 vacLVFL~~~f~~F~~~~deeK~v~Il~KTw~KMS~~g~ 168 (185)
T PF13875_consen 130 VACLVFLEYYFEDFAAKHDEEKIVDILRKTWRKMSERGH 168 (185)
T ss_pred hHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHH
Confidence 3688999998888877664 5688999999999999754
No 63
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=34.26 E-value=79 Score=29.83 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..++.+.-+++..++.+.
T Consensus 6 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 44 (454)
T cd07129 6 AAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVAR 44 (454)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 557788889999999999999999999999999888764
No 64
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=34.22 E-value=76 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++.++|.-...++.++-+++..++.+.
T Consensus 35 v~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~ 74 (462)
T PF00171_consen 35 VEAARAAFKEWSKLPAAERARILERFADLLEERRDELAEL 74 (462)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 4568888999999999999999999999999998887754
No 65
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=34.12 E-value=92 Score=29.23 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.+...|..++.++|..+...+.++-.++..++...
T Consensus 25 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (465)
T cd07098 25 AAARAAQREWAKTSFAERRKVLRSLLKYILENQEEICRV 63 (465)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457778889999999999999999999999999887754
No 66
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=33.98 E-value=87 Score=30.15 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
+.++...+.|..++.+||..+..+++++-+++..++....
T Consensus 43 ~aA~~a~~~W~~~~~~eR~~iL~~~a~~l~~~~~ela~~~ 82 (472)
T COG1012 43 AAARAAFEAWSRLSAEERAAILRRIADLLEARAEELAALI 82 (472)
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456777789999999999999999999999999888643
No 67
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=33.65 E-value=93 Score=29.28 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.+|.++|..+..+++++-.++..++.+..
T Consensus 42 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 82 (466)
T cd07138 42 VAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAI 82 (466)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45578888899999999999999999999999998888743
No 68
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=33.46 E-value=80 Score=30.70 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=33.9
Q ss_pred hHHHHHHH-HHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGF-EKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lG-E~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++... ..|+.++.+||.-+..+++++-+++..++.+.
T Consensus 46 v~aA~~A~~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~ 86 (521)
T PRK11903 46 FAFAREQGGAALRALTYAQRAALLAAIVKVLQANRDAYYDI 86 (521)
T ss_pred HHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566664 88999999999999999999999998888764
No 69
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=33.39 E-value=89 Score=29.43 Aligned_cols=40 Identities=18% Similarity=0.466 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|..++.++|..+..++.++-.++..++.+.
T Consensus 43 v~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~~ 82 (478)
T cd07131 43 VEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELARL 82 (478)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778889999999999999999999988888887664
No 70
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=33.27 E-value=90 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-.++..++.+.
T Consensus 45 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 84 (475)
T PRK13473 45 VAAADAAFPEWSQTTPKERAEALLKLADAIEENADEFARL 84 (475)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788889999999999999999999988998887764
No 71
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=33.17 E-value=90 Score=29.25 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|+.++.++|.-+..+++++-+++..++.+.
T Consensus 6 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 45 (431)
T cd07095 6 VAAARAAFPGWAALSLEERAAILRRFAELLKANKEELARL 45 (431)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3567788899999999999999999999999999888763
No 72
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=33.16 E-value=89 Score=29.30 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|+.++.++|..+..++++.-+++..++...
T Consensus 25 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 64 (448)
T TIGR01780 25 IRAAYEAFKTWKNTTAKERSSLLRKWYNLMMENKDDLARL 64 (448)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788899999999999999999999999999888654
No 73
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=33.15 E-value=1e+02 Score=29.38 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|..++.++|..+..++.++-+++..++....
T Consensus 44 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 84 (480)
T cd07559 44 VDAAHEAFKTWGKTSVAERANILNKIADRIEENLELLAVAE 84 (480)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35577888899999999999999999999999988887643
No 74
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=32.73 E-value=89 Score=29.77 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++...
T Consensus 45 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 83 (472)
T TIGR03374 45 RAADAAFAEWGQTTPKARAECLLKLADVIEENAQVFAEL 83 (472)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457778889999999999999999999999999888863
No 75
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=32.49 E-value=80 Score=29.39 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|..++.++|..+..++.++-+++..++.+.
T Consensus 7 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 45 (432)
T cd07105 7 EAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEA 45 (432)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456778889999999999999999999998888887753
No 76
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=32.38 E-value=92 Score=29.43 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|..++.+||.....++++.-+++..++.+.
T Consensus 10 v~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 49 (429)
T cd07121 10 VAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEM 49 (429)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999998888764
No 77
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=32.34 E-value=43 Score=22.78 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=16.3
Q ss_pred HHhhcCChhhhhhHHHHHHHH
Q 037983 102 EKWKNMSKEERQPYVIKAEML 122 (205)
Q Consensus 102 E~WKsLSdeEKkPY~dkA~e~ 122 (205)
..|+.|+++||..........
T Consensus 28 ~~W~~~s~~er~~i~~~l~~R 48 (51)
T PF06945_consen 28 RDWKSMSDDERRAILARLRAR 48 (51)
T ss_pred HHHhhCCHHHHHHHHHHHHHH
Confidence 479999999998777665543
No 78
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=32.20 E-value=1.1e+02 Score=28.54 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++.+.-.++..++.+.
T Consensus 25 v~~a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 64 (450)
T cd07092 25 VAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELAAL 64 (450)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457788899999999999999999999988888887764
No 79
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=32.09 E-value=23 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=11.4
Q ss_pred cccchhhccccchhhh
Q 037983 23 FEKCDRCEAMVPIALV 38 (205)
Q Consensus 23 F~~Ce~c~k~vpval~ 38 (205)
|..|+.||..||..-+
T Consensus 3 yg~C~~CGe~I~~~Rl 18 (36)
T PF01258_consen 3 YGICEDCGEPIPEERL 18 (36)
T ss_dssp -SB-TTTSSBEEHHHH
T ss_pred CCCccccCChHHHHHH
Confidence 5569999999998743
No 80
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=31.93 E-value=96 Score=29.38 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++.++|.....++.+.-.++..++.+.
T Consensus 44 i~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 83 (477)
T TIGR01722 44 VASARETFLTWGQTSLAQRTSVLLRYQALLKEHRDEIAEL 83 (477)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888899999999999999999999998888877764
No 81
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=31.87 E-value=98 Score=28.89 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|..+..++.+.-.++..++.+
T Consensus 27 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 65 (452)
T cd07147 27 IAAAVKAFRPMRALPAHRRAAILLHCVARLEERFEELAE 65 (452)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355778888999999999999999999988888888765
No 82
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=31.85 E-value=26 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=15.1
Q ss_pred CCCccccchhhccccchhhh
Q 037983 19 DGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 19 DgSaF~~Ce~c~k~vpval~ 38 (205)
.|..+.-|++||..||.+..
T Consensus 30 ~~~~~~~C~~Cg~~Ip~~Rl 49 (73)
T PRK13715 30 HGIPVYLCEACGNPIPEARR 49 (73)
T ss_pred cCCCcccHhhcCCcCCHHHH
Confidence 34444579999999999843
No 83
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=31.85 E-value=88 Score=30.32 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.+||.-+..++++.-++|..++.+.
T Consensus 16 v~~a~~af~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 55 (484)
T PLN02174 16 VTELRRSFDDGVTRGYEWRVTQLKKLMIICDNHEPEIVAA 55 (484)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567888889999999999999999999999999998864
No 84
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=31.84 E-value=94 Score=29.99 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++-.+|..+..+++++-+++..++...
T Consensus 80 v~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 119 (500)
T TIGR01238 80 IDSAQQAFPTWNATPAKERAAKLDRLADLLELHMPELMAL 119 (500)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557888899999999999999999999999999887653
No 85
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=31.75 E-value=98 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|.....+++++-+++..++.+
T Consensus 40 v~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 78 (474)
T cd07130 40 IKAAQEAFKEWRDVPAPKRGEIVRQIGDALRKKKEALGK 78 (474)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888999999999999999999999999988865
No 86
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=31.40 E-value=99 Score=28.95 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|..++.++|..+..++.++-+++..++.+..
T Consensus 25 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 65 (456)
T cd07110 25 VRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREELAELE 65 (456)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35578888999999999999999999999999988887643
No 87
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=31.36 E-value=85 Score=29.22 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++...+.|+.++.++|..+..++.+.-+++..++.+
T Consensus 24 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 62 (452)
T cd07102 24 LERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEIAE 62 (452)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 355788889999999999999999999988888877764
No 88
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=31.25 E-value=98 Score=29.97 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|..++.+||..+..+++++-+++..++.+-
T Consensus 62 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 101 (508)
T PLN02315 62 LRACEEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRL 101 (508)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557777888999999999999999999999998877753
No 89
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=31.23 E-value=99 Score=29.20 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++.++|..+..++++.-+++..++.+..
T Consensus 43 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 83 (473)
T cd07097 43 IAAAAAAFPAWRRTSPEARADILDKAGDELEARKEELARLL 83 (473)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35577788899999999999999999999999998887643
No 90
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=30.97 E-value=86 Score=29.24 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|..++.++|..+..++++.-.++..++...
T Consensus 4 ~~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 43 (406)
T cd07079 4 AKRAKAASRALATLSTEQKNAALLAIADALEANRDEILEA 43 (406)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 3567888899999999999999999999998998887764
No 91
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=30.93 E-value=99 Score=29.42 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 41 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (484)
T TIGR03240 41 VAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARV 80 (484)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557778889999999999999999999999999887764
No 92
>PRK10236 hypothetical protein; Provisional
Probab=30.68 E-value=46 Score=30.00 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCChhhhhhHHHHHH
Q 037983 96 IDQKGFEKWKNMSKEERQPYVIKAE 120 (205)
Q Consensus 96 IsK~lGE~WKsLSdeEKkPY~dkA~ 120 (205)
+.++++..|+.||++|++-+.+.-.
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~ 142 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVD 142 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 5899999999999999976655433
No 93
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=30.57 E-value=1e+02 Score=28.82 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++.+.-+++..++...
T Consensus 25 v~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~ 64 (453)
T cd07115 25 VAAARAAFEAWSAMDPAERGRILWRLAELILANADELARL 64 (453)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567888899999999999999999999999999888764
No 94
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=30.53 E-value=1e+02 Score=29.00 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 38 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 77 (465)
T cd07151 38 YRAAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEW 77 (465)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557778889999999999999999999988888887764
No 95
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=30.35 E-value=1.1e+02 Score=29.51 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.+...|..+|.+||..+...++..-.++..++.+
T Consensus 14 v~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~ 52 (488)
T TIGR02518 14 IRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAK 52 (488)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456888889999999999999999999998888888887
No 96
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=30.30 E-value=1e+02 Score=28.96 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-.++..++.+.
T Consensus 41 v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 80 (467)
T TIGR01804 41 IAAARRAQGEWASMTPEERGRILRRIAELIRERNEELAKL 80 (467)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457777889999999999999999999999999888764
No 97
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=30.21 E-value=1e+02 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 41 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (478)
T cd07086 41 VAAAREAFKEWRKVPAPRRGEIVRQIGEALRKKKEALGRL 80 (478)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457777889999999999999999999999999887764
No 98
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=30.15 E-value=90 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++..+-+++..++.+.
T Consensus 29 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 68 (457)
T PRK09406 29 IARAHARFRDYRTTTFAQRARWANAAADLLEAEADQVAAL 68 (457)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 4567888899999999999999999999999998888763
No 99
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=30.08 E-value=96 Score=31.12 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++-+||..+..+++++-+++..++...
T Consensus 158 ~aA~~A~~~W~~~~~~eR~~iL~k~a~~L~~~~~ela~~ 196 (604)
T PLN02419 158 SAAKQAFPLWRNTPITTRQRVMLKFQELIRKNMDKLAMN 196 (604)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 557888899999999999999999999999999888653
No 100
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=29.99 E-value=62 Score=30.40 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 98 QKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 98 K~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.+...|+.+|.++|.-+..++++.-+++..++.+.
T Consensus 2 ~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 37 (398)
T TIGR00407 2 KQAANILAQLSTAEKNDALSKIADGLEAQAPAILAA 37 (398)
T ss_pred hhHHHHHHhCCHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 456789999999999999999999999999876655
No 101
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=29.95 E-value=96 Score=29.41 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHHHHHHH-hhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEK-WKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~-WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++..... |+.++.++|..+..+++++-+++..++...
T Consensus 43 ~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 82 (481)
T TIGR03216 43 AAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAA 82 (481)
T ss_pred HHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456667776 999999999999999999999999888763
No 102
>PLN02278 succinic semialdehyde dehydrogenase
Probab=29.90 E-value=1e+02 Score=29.54 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++-++|..+..++++.-+++..++...
T Consensus 68 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 107 (498)
T PLN02278 68 IASAHDAFPSWSKLTASERSKILRRWYDLIIANKEDLAQL 107 (498)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3457777889999999999999999999999999888764
No 103
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=29.79 E-value=1.1e+02 Score=28.60 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++...+.|+.++.++|..+..++.+.-+++..++.+..
T Consensus 27 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 67 (456)
T cd07145 27 IEVAEKAKDVMSNLPAYKRYKILMKVAELIERRKEELAKLL 67 (456)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35577888999999999999999999999999988887643
No 104
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=29.61 E-value=90 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHH-HHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDA-AHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~-~Y~kem~e 132 (205)
.+.++...+.|+.++..+|..+..+++++-+ ++..++..
T Consensus 75 v~~A~~a~~~W~~~~~~~R~~~L~k~a~~l~~~~~~~la~ 114 (533)
T TIGR01236 75 VEAALDAKKDWSALPFYDRAAIFLKAADLLSGPYREEILA 114 (533)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 3557888889999999999999999999888 58887765
No 105
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=29.45 E-value=1.1e+02 Score=28.44 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|.-+..++.++-.++..++.+.
T Consensus 25 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (455)
T cd07093 25 VAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALL 64 (455)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888899999999999999999999999999888753
No 106
>PLN02203 aldehyde dehydrogenase
Probab=28.82 E-value=1.2e+02 Score=29.37 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++..+|..+..++++.-+++..++.+..
T Consensus 12 v~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 52 (484)
T PLN02203 12 VAELRETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKAL 52 (484)
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35578888899999999999999999999999999888754
No 107
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=28.81 E-value=1.1e+02 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|..+..++++.-+++..++..
T Consensus 41 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 79 (468)
T cd07088 41 VDAAEAAQKAWERLPAIERAAYLRKLADLIRENADELAK 79 (468)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345778889999999999999999999998888888775
No 108
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=28.76 E-value=1.3e+02 Score=28.50 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|..++.++|..+..++++.-+++..++...
T Consensus 44 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 83 (479)
T cd07116 44 LDAAHAAKEAWGKTSVAERANILNKIADRMEANLEMLAVA 83 (479)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4557777888999999999999999999999998888754
No 109
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=28.59 E-value=1.2e+02 Score=29.02 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+-
T Consensus 43 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 82 (487)
T PRK09457 43 VRAARAAFPAWARLSFEERQAIVERFAALLEENKEELAEV 82 (487)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567888889999999999999999999999998887753
No 110
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=28.48 E-value=1.1e+02 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+...|..++.+||..+...+++.-+++..++.+.
T Consensus 300 ~~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~ 339 (718)
T PLN02418 300 AVAARESSRKLQALSSEERKKILLDVADALEANEELIKAE 339 (718)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4678888899999999999999999999999999998776
No 111
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=28.35 E-value=1.2e+02 Score=28.41 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++.++|..+..++++.-+++..++...
T Consensus 25 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (456)
T cd07107 25 VAAARAAFPEWRATTPLERARMLRELATRLREHAEELALI 64 (456)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788899999999999999999999998888887653
No 112
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=28.23 E-value=1.2e+02 Score=28.77 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|.....++++.-+++..++.+
T Consensus 44 v~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~ 82 (488)
T TIGR02299 44 AKAAKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAV 82 (488)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355788888999999999999999999999999888775
No 113
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=27.90 E-value=29 Score=27.99 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=19.3
Q ss_pred hhhhCCCCCccccchhhccccchhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIAL 37 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval 37 (205)
||.|=.+|+ |-.|+.||..||.+-
T Consensus 71 al~rIe~gt-YG~Ce~cG~~Ip~~R 94 (120)
T COG1734 71 ALDRIEEGT-YGICEECGEPIPEAR 94 (120)
T ss_pred HHHHHHcCC-ccchhccCCcCCHHH
Confidence 467777776 677999999999883
No 114
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=27.63 E-value=1.2e+02 Score=29.00 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|..+..+++++-.++..++..
T Consensus 65 i~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 103 (480)
T cd07111 65 VAAARTAFESWSALPGHVRARHLYRIARHIQKHQRLFAV 103 (480)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345677788999999999999999999998888888764
No 115
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=27.48 E-value=1.1e+02 Score=29.35 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++...+.|+.++.++|..+..++.++-+++..++..
T Consensus 61 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 99 (500)
T cd07083 61 LEAAWAAFKTWKDWPQEDRARLLLKAADLLRRRRRELIA 99 (500)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 355788889999999999999999999998888877665
No 116
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=27.38 E-value=1e+02 Score=30.00 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=33.7
Q ss_pred hHHHHHH-HHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKG-FEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~l-GE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.. ...|+.++.+||..+..+++++-+++..++...
T Consensus 42 v~~A~~A~~~~W~~~~~~~Ra~~L~~~a~~l~~~~~~la~l 82 (513)
T cd07128 42 VAYAREKGGPALRALTFHERAAMLKALAKYLMERKEDLYAL 82 (513)
T ss_pred HHHHHHhhhchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456665 478999999999999999999999999888764
No 117
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=27.26 E-value=1.2e+02 Score=28.96 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|.....++++.-+++..++.+.
T Consensus 42 v~~A~~A~~~w~~~~~~~R~~~L~~la~~l~~~~~ela~~ 81 (465)
T PRK15398 42 VAAAKVAQQRYQQKSLAMRQRIIDAIREALLPHAEELAEL 81 (465)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999998887753
No 118
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=26.98 E-value=1.1e+02 Score=29.41 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+
T Consensus 75 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~ 113 (511)
T TIGR01237 75 LQIAKKAFEAWKKTPVRERAGILRKAAAIMERRRHELNA 113 (511)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 355788888999999999999999999999999888775
No 119
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=26.86 E-value=1.3e+02 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.....|+.++.++|..+..++.++-.++..++.+..
T Consensus 27 v~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~ 67 (453)
T cd07094 27 LATARAGAENRRALPPHERMAILERAADLLKKRAEEFAKII 67 (453)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35677888899999999999999999999888888877653
No 120
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=26.16 E-value=76 Score=25.76 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCCh
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSK 109 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSd 109 (205)
|..+-+|-.-||.-|....-..++..+| .++-.+|.+.|..-++
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCC
Confidence 5555667778999999999999999999 7888999999987655
No 121
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=67 Score=29.28 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=31.6
Q ss_pred chhhhhhhhhhCCCCCccccchhhccccchhhhhhhHHHHHHHhhh
Q 037983 6 RTRKRVHAIRRAPDGSAFEKCDRCEAMVPIALVDMHECEAKVKNKV 51 (205)
Q Consensus 6 ~~rkrv~a~~Ra~DgSaF~~Ce~c~k~vpval~dmh~C~~~~~~~i 51 (205)
..++|+....=.-|-|+=.-|-.||..|=--|-+.|.-+-.-+..|
T Consensus 18 k~~~ri~splakyn~sgql~C~vCn~piKp~lW~vHvnsKkHre~i 63 (264)
T KOG3032|consen 18 KKDTRIDSPLAKYNESGQLVCRVCNVPIKPSLWDVHVNSKKHREAI 63 (264)
T ss_pred CcccccccHhhccCCCCCeeEEEecCcccHHHHHHHhccHHHHHHH
Confidence 3455555422245667777899999988877999999886544444
No 122
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=25.75 E-value=1.4e+02 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|..++.++|..+..++.+.-.++..++.+
T Consensus 27 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 65 (453)
T cd07149 27 IAAAKEGAKEMKSLPAYERAEILERAAQLLEERREEFAR 65 (453)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355778889999999999999999999998888888775
No 123
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=25.56 E-value=1.3e+02 Score=26.99 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 96 IDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 96 IsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.++.....|+.++.++|..+.....+.-.++..++.+.
T Consensus 2 ~a~~a~~~w~~~~~~~R~~~l~~l~~~l~~~~~~l~~~ 39 (367)
T cd06534 2 AARAAFKAWAALPPAERAAILRKIADLLEERREELAAL 39 (367)
T ss_pred hHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999888888777754
No 124
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=25.47 E-value=1.4e+02 Score=28.76 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-+++..++...
T Consensus 75 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 114 (518)
T cd07125 75 LAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIAL 114 (518)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557888899999999999999999999988998887754
No 125
>PF12230 PRP21_like_P: Pre-mRNA splicing factor PRP21 like protein; InterPro: IPR022030 This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with PF01805 from PFAM. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form. ; PDB: 4DGW_B.
Probab=25.38 E-value=23 Score=30.41 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCccccchhhccccchhhhhhhHHHHHHH
Q 037983 18 PDGSAFEKCDRCEAMVPIALVDMHECEAKVK 48 (205)
Q Consensus 18 ~DgSaF~~Ce~c~k~vpval~dmh~C~~~~~ 48 (205)
.++..+..|.-||..||+.-++-|-.-.-+.
T Consensus 163 ~~~~~~~~cPitGe~IP~~e~~eHmRi~LlD 193 (229)
T PF12230_consen 163 KPKEKMIICPITGEMIPADEMDEHMRIELLD 193 (229)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4688999999999999999999998754333
No 126
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=25.36 E-value=1.5e+02 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++...+.|+.++-++|..+..++.+.-.++..++.+
T Consensus 26 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~ 63 (451)
T cd07103 26 DAAAAAFKTWRKTTARERAAILRRWADLIRERAEDLAR 63 (451)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677789999999999999999999998888888775
No 127
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=25.08 E-value=1.4e+02 Score=27.98 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
+.++.....|..++..+|.....+++++-+++..++.+..
T Consensus 5 ~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (433)
T cd07134 5 AAQQAHALALRASTAAERIAKLKRLKKAILARREEIIAAL 44 (433)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577888899999999999999999999999998877643
No 128
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=24.98 E-value=1.3e+02 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..++++.-+++..++.+.
T Consensus 45 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 83 (475)
T cd07117 45 KAAQEAFKTWRKTTVAERANILNKIADIIDENKELLAMV 83 (475)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 456777889999999999999999999998888887764
No 129
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=24.97 E-value=1.3e+02 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=22.6
Q ss_pred HHHhhcCChhhhhhHHHHHHHHHHHHHHH
Q 037983 101 FEKWKNMSKEERQPYVIKAEMLDAAHRRA 129 (205)
Q Consensus 101 GE~WKsLSdeEKkPY~dkA~e~K~~Y~ke 129 (205)
-..|.+||+++|+-..+.+.+.-+.....
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~~ 241 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRKL 241 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988877765544443
No 130
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=24.93 E-value=1.5e+02 Score=27.71 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|.....++.+.-+++..++.+.
T Consensus 25 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 64 (457)
T cd07090 25 VKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIARL 64 (457)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567788899999999999999999999999998888763
No 131
>COG4830 RPS26B Ribosomal protein S26 [Translation, ribosomal structure and biogenesis]
Probab=24.93 E-value=27 Score=27.86 Aligned_cols=16 Identities=31% Similarity=0.816 Sum_probs=13.5
Q ss_pred Cccccchhhccccchh
Q 037983 21 SAFEKCDRCEAMVPIA 36 (205)
Q Consensus 21 SaF~~Ce~c~k~vpva 36 (205)
-.|.+|+.||+.||-.
T Consensus 18 v~~v~CdnCg~~vPkd 33 (108)
T COG4830 18 VKYVRCDNCGKAVPKD 33 (108)
T ss_pred ccceeeccccccCCcc
Confidence 4588999999999864
No 132
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=24.88 E-value=1.3e+02 Score=28.95 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++...
T Consensus 75 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 114 (512)
T cd07124 75 VQAARAAFPTWRRTPPEERARLLLRAAALLRRRRFELAAW 114 (512)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 3557778889999999999999999999999998887753
No 133
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=24.67 E-value=1.7e+02 Score=28.15 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|..++.++|..+..++++.-+++..++...
T Consensus 59 v~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~ 98 (496)
T PLN00412 59 MESAKAAQKAWAKTPLWKRAELLHKAAAILKEHKAPIAEC 98 (496)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557778889999999999999999999999998887653
No 134
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=24.52 E-value=1.2e+02 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 101 FEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 101 GE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.|.+||++.|+-..+.+.+.-........+
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~~ 244 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAREYYEA 244 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988876555444443
No 135
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.44 E-value=2.7e+02 Score=21.62 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=10.6
Q ss_pred HHHHHHHhhcCChhhhhhHHHHH
Q 037983 97 DQKGFEKWKNMSKEERQPYVIKA 119 (205)
Q Consensus 97 sK~lGE~WKsLSdeEKkPY~dkA 119 (205)
..-+.+.|..|++..|..+...|
T Consensus 13 L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 13 LAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444444444444444
No 136
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=24.39 E-value=1.3e+02 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAA 125 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~ 125 (205)
.+..+.+.+.+.+||++|++..++.++++++.
T Consensus 13 ~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~ 44 (248)
T PF08367_consen 13 EEEKEKLAAYKASLSEEEKEKIIEQTKELKER 44 (248)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999988654
No 137
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=24.30 E-value=1.8e+02 Score=26.66 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+.++-++|..+..++.+.-..+..++.+.
T Consensus 4 v~~a~~a~~~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~ 43 (432)
T cd07078 4 VAAARAAFKAWAALPPAERAAILRKLADLLEERREELAAL 43 (432)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567888999999999999999999999888888777654
No 138
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=23.87 E-value=1.6e+02 Score=24.81 Aligned_cols=32 Identities=6% Similarity=0.065 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAH 126 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y 126 (205)
+..++--+++.-||+|+|+.|.+..++-..+.
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~ 149 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKL 149 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 44677788899999999999988766654444
No 139
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=23.67 E-value=1.6e+02 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|.....++++.-.++..++.+.
T Consensus 60 v~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 99 (524)
T PRK09407 60 FARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDL 99 (524)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788899999999999999999999988888877753
No 140
>PF11519 DUF3222: Protein of unknown function (DUF3222); InterPro: IPR021599 This family of proteins with unknown function appears to be restricted to Rhodopseudomonas. ; PDB: 2JS3_B.
Probab=23.56 E-value=31 Score=25.66 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=15.6
Q ss_pred hCCCCCccccchhhccccchh
Q 037983 16 RAPDGSAFEKCDRCEAMVPIA 36 (205)
Q Consensus 16 Ra~DgSaF~~Ce~c~k~vpva 36 (205)
--.||-|--.|..||.+||--
T Consensus 25 seedgga~nqcklc~asvpwl 45 (74)
T PF11519_consen 25 SEEDGGAHNQCKLCNASVPWL 45 (74)
T ss_dssp E-SSS-EEEEETTSS-EEETT
T ss_pred ccccCcccccchhcCCcChhh
Confidence 347999999999999999853
No 141
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=23.39 E-value=1.6e+02 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhh-cCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWK-NMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WK-sLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++...+.|+ .++.++|..+..+++++-+++..++...
T Consensus 25 v~~A~~a~~~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~ 65 (459)
T cd07089 25 IAAARRAFDTGDWSTDAEERARCLRQLHEALEARKEELRAL 65 (459)
T ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355777788898 9999999999999999999999887763
No 142
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=23.02 E-value=1.4e+02 Score=29.95 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=33.8
Q ss_pred hHHHHHH-HHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKG-FEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~l-GE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.+ ...|+.++.+||..+..+++++-+++..++...
T Consensus 46 v~~A~~A~~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~l 86 (675)
T PRK11563 46 LAYAREVGGPALRALTFHERAAMLKALAKYLLERKEELYAL 86 (675)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556665 478999999999999999999999999888764
No 143
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=22.93 E-value=41 Score=19.99 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.3
Q ss_pred cchhhccccchhhhhhhH
Q 037983 25 KCDRCEAMVPIALVDMHE 42 (205)
Q Consensus 25 ~Ce~c~k~vpval~dmh~ 42 (205)
.|-.|++.|+..+|.-|-
T Consensus 3 ~CPiC~~~v~~~~in~HL 20 (26)
T smart00734 3 QCPVCFREVPENLINSHL 20 (26)
T ss_pred cCCCCcCcccHHHHHHHH
Confidence 489999999988888773
No 144
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=22.65 E-value=1.5e+02 Score=28.78 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHH-HHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAA-HRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~-Y~kem~e~ 133 (205)
+.++.....|..|+.++|.-+..+++++-++ +..++...
T Consensus 76 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~ela~~ 115 (522)
T cd07123 76 EAALEARKEWARMPFEDRAAIFLKAADLLSGKYRYELNAA 115 (522)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4577788899999999999999998888875 77776653
No 145
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=22.44 E-value=1.5e+02 Score=28.51 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++...+.|..++.++|..+..++.++-+++..++...
T Consensus 80 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 118 (514)
T PRK03137 80 QAALEAFETWKKWSPEDRARILLRAAAIIRRRKHEFSAW 118 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 557888889999999999999999999999998887753
No 146
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.20 E-value=2.7e+02 Score=23.39 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL 131 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~ 131 (205)
+..++.-+.+.-||+++|..|.+.-++-.+.+...+.
T Consensus 125 ~~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~~ 161 (170)
T PRK12750 125 KMLEKRHQMLSILTPEQKAKFQELQQERMQECQDKMH 161 (170)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677789999999999999998888888877773
No 147
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.99 E-value=45 Score=19.34 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=6.5
Q ss_pred CCCccccchhhccc
Q 037983 19 DGSAFEKCDRCEAM 32 (205)
Q Consensus 19 DgSaF~~Ce~c~k~ 32 (205)
|++.| |..||..
T Consensus 11 ~~~~f--C~~CG~~ 22 (23)
T PF13240_consen 11 DDAKF--CPNCGTP 22 (23)
T ss_pred CcCcc--hhhhCCc
Confidence 45555 6666543
No 148
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=21.51 E-value=62 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=18.7
Q ss_pred hhhhhCCCCCccc-----cchhhccccchhhh
Q 037983 12 HAIRRAPDGSAFE-----KCDRCEAMVPIALV 38 (205)
Q Consensus 12 ~a~~Ra~DgSaF~-----~Ce~c~k~vpval~ 38 (205)
+.|+..++|-+++ .|.+|+..+|...+
T Consensus 6 ~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~ 37 (56)
T PF02591_consen 6 ERLRKRKGGVAVARVEGGTCSGCHMELPPQEL 37 (56)
T ss_pred HHHHhhcCCcEEEEeeCCccCCCCEEcCHHHH
Confidence 3455556666665 59999999987743
No 149
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=21.49 E-value=2.2e+02 Score=26.60 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhh-cCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWK-NMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 94 ~EIsK~lGE~WK-sLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++...+.|. .++.++|..+..++.+.-.++..++.+..
T Consensus 25 v~~a~~A~~~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 66 (454)
T cd07109 25 VQAARRAFESGWLRLSPAERGRLLLRIARLIREHADELARLE 66 (454)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 355777778776 99999999999999999999998888653
No 150
>PRK06424 transcription factor; Provisional
Probab=21.46 E-value=1.2e+02 Score=25.06 Aligned_cols=20 Identities=25% Similarity=0.650 Sum_probs=13.5
Q ss_pred chhhccccchh------hhhhhHHHH
Q 037983 26 CDRCEAMVPIA------LVDMHECEA 45 (205)
Q Consensus 26 Ce~c~k~vpva------l~dmh~C~~ 45 (205)
||-||+.|+-. =+.|-.|+.
T Consensus 3 CE~CG~~~~~~~~v~ieg~~l~vC~~ 28 (144)
T PRK06424 3 CEMCGKKVPQTTKVMIDGAILNVCDD 28 (144)
T ss_pred ccccCcccCCceEEEEcCeeeehhHH
Confidence 99999988743 234666753
No 151
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=20.78 E-value=1.3e+02 Score=28.32 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=31.8
Q ss_pred HHHHHHH--HhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 96 IDQKGFE--KWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 96 IsK~lGE--~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.++...+ .|..++-++|..+..+++++-+++..++.+..
T Consensus 27 ~A~~a~~~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~ 67 (454)
T cd07118 27 AARKAFDKGPWPRMSGAERAAVLLKVADLIRARRERLALIE 67 (454)
T ss_pred HHHHHcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455544 39999999999999999999999998887643
No 152
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=20.72 E-value=1.6e+02 Score=27.90 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=32.5
Q ss_pred HHHHHHHH-HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE-KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE-~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.++|..+..++++.-.++..++.+.
T Consensus 44 ~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 83 (477)
T cd07113 44 ASAWRAFVSAWAKTTPAERGRILLRLADLIEQHGEELAQL 83 (477)
T ss_pred HHHHHHhHhhhccCCHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 34555555 4999999999999999999999999888864
No 153
>PLN02467 betaine aldehyde dehydrogenase
Probab=20.68 E-value=1.6e+02 Score=28.33 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHHHHH-----HHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGF-----EKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lG-----E~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++... ..|..++.++|..+..+++++-+++..++...
T Consensus 52 ~~A~~a~~~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 95 (503)
T PLN02467 52 EAARKAFKRNKGKDWARTTGAVRAKYLRAIAAKITERKSELAKL 95 (503)
T ss_pred HHHHHHhhhcccchhhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555 77999999999999999999999999888764
No 154
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=20.67 E-value=1.9e+02 Score=27.92 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|..++.++|..+..+.+++-.++..++.+-
T Consensus 13 v~~a~~a~~~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a 52 (493)
T PTZ00381 13 VKKLKESFLTGKTRPLEFRKQQLRNLLRMLEENKQEFSEA 52 (493)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788889999999999999999999999999888763
No 155
>PF02919 Topoisom_I_N: Eukaryotic DNA topoisomerase I, DNA binding fragment; InterPro: IPR008336 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the N-terminal DNA-binding domain found in eukaryotic topoisomerase I, which is a type IB enzymes. To cleave the DNA backbone, these enzymes must make a transient phosphotyrosine bond. The N-terminal domain of human topoisomerase I is thought to coordinate the restriction of free strand rotation during the topoisomerisation step of catalysis. A conserved tryptophan residue may be important for the DNA-interaction ability of the N-terminal domain []. Human topoisomerase I has been shown to be inhibited by camptothecin (CPT), a plant alkaloid with antitumour activity. A binding mode for the anticancer drug camptothecin has been proposed on the basis of chemical and biochemical information combined with the three-dimensional structures of topoisomerase I-DNA complexes []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=20.63 E-value=2.2e+02 Score=25.36 Aligned_cols=48 Identities=31% Similarity=0.299 Sum_probs=28.3
Q ss_pred hHHHHhHHHhcCCCh-----------h---HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHH
Q 037983 79 IFMETFVETCGSREL-----------I---DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAH 126 (205)
Q Consensus 79 lF~~e~Rk~~K~~nP-----------~---EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y 126 (205)
.|.+++|+.+...+. + +.-....|.=++||.+||+.-.+..+++.+.|
T Consensus 63 NFf~Df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~skeEK~~~K~~k~~~~~~y 124 (215)
T PF02919_consen 63 NFFKDFRKVLTKEERKKIKDFDKCDFSPIYEYFEKEKEKKKNMSKEEKKALKEEKEELEEKY 124 (215)
T ss_dssp HHHHHHHHHHCHCCHHH-S-GGGEETHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcccCchhhCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC
Confidence 467777777765442 2 33444556778999999985444444444444
No 156
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=20.18 E-value=48 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.8
Q ss_pred hhhCCCC---Cccccchhhccccchh
Q 037983 14 IRRAPDG---SAFEKCDRCEAMVPIA 36 (205)
Q Consensus 14 ~~Ra~Dg---SaF~~Ce~c~k~vpva 36 (205)
.||++|. ..+..|..||...--.
T Consensus 15 ~RRsh~~l~~~~l~~C~~CG~~~~~H 40 (57)
T PRK12286 15 KRRAHFKLKAPGLVECPNCGEPKLPH 40 (57)
T ss_pred hhcccccccCCcceECCCCCCccCCe
Confidence 6677764 6777899999877443
No 157
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=20.02 E-value=1.1e+02 Score=20.10 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=14.6
Q ss_pred HHHhhcCChhhhhhHHHHHH
Q 037983 101 FEKWKNMSKEERQPYVIKAE 120 (205)
Q Consensus 101 GE~WKsLSdeEKkPY~dkA~ 120 (205)
-|.|..|.+.+|.-|-+...
T Consensus 12 ~eEW~~L~~~Qk~ly~dvm~ 31 (41)
T PF01352_consen 12 QEEWELLDPAQKNLYRDVML 31 (41)
T ss_dssp HHHHHTS-HHHHHHHHHHHH
T ss_pred hhhcccccceecccchhHHH
Confidence 36799999999988776543
Done!