Query 037983
Match_columns 205
No_of_seqs 153 out of 832
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 4.1E-23 1.4E-27 156.3 8.5 88 59-146 7-98 (102)
2 3fgh_A Transcription factor A, 99.9 1.4E-22 4.9E-27 141.8 8.7 67 68-134 1-67 (67)
3 2eqz_A High mobility group pro 99.9 1.5E-22 5.1E-27 148.3 9.0 72 62-133 8-85 (86)
4 1k99_A Upstream binding factor 99.9 1.5E-22 5.2E-27 152.9 8.1 77 62-138 3-83 (99)
5 1v64_A Nucleolar transcription 99.9 6.8E-22 2.3E-26 151.9 10.3 80 59-138 6-86 (108)
6 1aab_A High mobility group pro 99.9 3.1E-22 1.1E-26 145.3 5.7 71 65-135 3-79 (83)
7 1hme_A High mobility group pro 99.9 4.1E-22 1.4E-26 142.4 5.3 70 65-134 2-75 (77)
8 2crj_A SWI/SNF-related matrix- 99.8 1.8E-21 6.2E-26 144.4 8.1 72 65-136 3-78 (92)
9 1cg7_A Protein (NON histone pr 99.8 6.1E-22 2.1E-26 147.4 4.8 77 60-136 11-91 (93)
10 2cs1_A PMS1 protein homolog 1; 99.8 1.6E-21 5.5E-26 144.7 6.5 74 65-138 3-80 (92)
11 1wgf_A Upstream binding factor 99.8 4.5E-22 1.5E-26 147.3 3.3 71 61-131 12-86 (90)
12 2lhj_A High mobility group pro 99.8 8.1E-22 2.8E-26 147.5 4.4 77 60-136 13-95 (97)
13 2e6o_A HMG box-containing prot 99.8 2.6E-21 9E-26 142.2 5.8 70 62-131 10-83 (87)
14 1hry_A Human SRY; DNA, DNA-bin 99.8 3.1E-21 1.1E-25 137.5 4.6 68 66-133 1-72 (76)
15 1ckt_A High mobility group 1 p 99.8 5.7E-21 1.9E-25 134.3 5.6 65 69-133 1-71 (71)
16 1l8y_A Upstream binding factor 99.8 9.3E-21 3.2E-25 143.5 5.7 70 68-137 3-75 (91)
17 1v63_A Nucleolar transcription 99.8 5.3E-20 1.8E-24 139.7 9.7 76 66-141 5-82 (101)
18 3nm9_A HMG-D, high mobility gr 99.8 3.1E-20 1.1E-24 132.1 7.3 67 67-135 1-71 (73)
19 1wxl_A Single-strand recogniti 99.8 1.8E-20 6.1E-25 133.3 4.7 68 67-136 1-72 (73)
20 2gzk_A Sex-determining region 99.8 7.3E-20 2.5E-24 146.3 8.2 74 62-135 81-158 (159)
21 1j46_A SRY, sex-determining re 99.8 3.6E-20 1.2E-24 135.4 5.7 69 66-134 1-73 (85)
22 4a3n_A Transcription factor SO 99.8 3.3E-20 1.1E-24 129.9 5.1 66 68-133 1-70 (71)
23 1wz6_A HMG-box transcription f 99.8 1.3E-20 4.5E-25 136.4 2.7 70 65-134 3-76 (82)
24 4euw_A Transcription factor SO 99.8 4.8E-20 1.6E-24 140.7 5.4 70 64-133 24-97 (106)
25 1gt0_D Transcription factor SO 99.8 8.6E-20 2.9E-24 131.4 6.4 67 68-134 1-71 (80)
26 3tq6_A Transcription factor A, 99.8 8.4E-20 2.9E-24 154.4 6.1 74 64-137 109-182 (214)
27 2yrq_A High mobility group pro 99.8 5.1E-19 1.8E-23 143.6 10.1 75 61-135 93-171 (173)
28 3f27_D Transcription factor SO 99.8 7.6E-20 2.6E-24 132.2 4.6 68 66-133 3-74 (83)
29 3u2b_C Transcription factor SO 99.8 1.7E-19 5.7E-24 129.1 5.8 66 68-133 1-70 (79)
30 2cto_A Novel protein; high mob 99.8 4.2E-20 1.4E-24 139.8 2.7 73 65-137 6-83 (93)
31 3tmm_A Transcription factor A, 99.8 1.4E-19 4.7E-24 155.2 5.8 74 64-137 141-214 (238)
32 1i11_A Transcription factor SO 99.8 2E-19 6.7E-24 130.0 4.5 67 67-133 2-72 (81)
33 2lef_A LEF-1 HMG, protein (lym 99.8 3E-19 1E-23 130.5 5.3 67 68-134 1-71 (86)
34 2yrq_A High mobility group pro 99.8 1.1E-18 3.7E-23 141.7 7.8 75 62-136 8-88 (173)
35 2d7l_A WD repeat and HMG-box D 99.7 2.2E-18 7.5E-23 126.7 3.7 58 66-123 2-64 (81)
36 3tmm_A Transcription factor A, 99.7 3.1E-18 1.1E-22 146.8 5.0 77 64-140 36-116 (238)
37 2yuk_A Myeloid/lymphoid or mix 99.7 4.1E-19 1.4E-23 134.0 -0.4 66 63-129 16-84 (90)
38 3tq6_A Transcription factor A, 99.7 8.4E-18 2.9E-22 142.1 6.1 76 66-141 6-85 (214)
39 2gzk_A Sex-determining region 99.6 1.1E-15 3.9E-20 121.9 4.6 68 67-134 2-73 (159)
40 2qgu_A Probable signal peptide 73.0 2 7E-05 35.5 2.8 44 93-136 74-119 (211)
41 2kgo_A Uncharacterized protein 70.5 1.5 5.1E-05 33.8 1.3 27 13-39 46-72 (108)
42 2kq9_A DNAK suppressor protein 59.9 1.9 6.4E-05 32.6 0.0 25 13-38 72-96 (112)
43 1tjl_A DNAK suppressor protein 58.1 2.8 9.6E-05 33.5 0.7 26 13-39 102-127 (151)
44 2i5o_A DNA polymerase ETA; zin 53.9 4.7 0.00016 25.6 1.1 18 25-42 11-28 (39)
45 2wme_A BADH, betaine aldehyde 39.8 35 0.0012 31.4 5.1 39 95-133 51-89 (490)
46 1o20_A Gamma-glutamyl phosphat 38.1 40 0.0014 30.2 5.1 40 94-133 20-59 (427)
47 4h7n_A Aldehyde dehydrogenase; 36.3 25 0.00086 31.9 3.5 39 95-133 35-73 (474)
48 3ifg_A Succinate-semialdehyde 35.2 51 0.0017 30.1 5.4 39 95-133 57-95 (484)
49 4f3x_A Putative aldehyde dehyd 34.6 53 0.0018 30.1 5.5 39 95-133 69-107 (498)
50 4dng_A Uncharacterized aldehyd 34.1 50 0.0017 30.0 5.1 39 95-133 51-89 (485)
51 3ty7_A Putative aldehyde dehyd 34.1 49 0.0017 30.0 5.1 39 95-133 52-90 (478)
52 1vlu_A Gamma-glutamyl phosphat 33.6 50 0.0017 30.1 5.1 40 94-133 20-59 (468)
53 2w8n_A Succinate-semialdehyde 33.2 51 0.0018 30.1 5.1 39 95-133 55-93 (487)
54 3v4c_A Aldehyde dehydrogenase 33.1 58 0.002 30.0 5.5 39 95-133 70-108 (528)
55 4e4g_A Methylmalonate-semialde 32.8 61 0.0021 30.0 5.6 38 95-132 71-108 (521)
56 1euh_A NADP dependent non phos 32.7 48 0.0016 30.1 4.7 38 95-132 47-84 (475)
57 3ek1_A Aldehyde dehydrogenase; 32.4 53 0.0018 30.3 5.1 39 95-133 77-115 (504)
58 3i44_A Aldehyde dehydrogenase; 32.3 60 0.0021 29.8 5.4 39 95-133 70-108 (497)
59 2imp_A Lactaldehyde dehydrogen 32.2 49 0.0017 30.0 4.7 38 95-132 51-88 (479)
60 1ez0_A ALDH, aldehyde dehydrog 32.1 49 0.0017 30.4 4.7 39 95-133 37-75 (510)
61 1wnd_A Putative betaine aldehy 31.9 62 0.0021 29.7 5.4 38 95-132 67-104 (495)
62 2czr_A TBP-interacting protein 31.8 14 0.00049 31.4 1.0 20 22-41 153-172 (226)
63 1t90_A MMSDH, probable methylm 31.6 55 0.0019 29.8 5.0 39 95-133 50-88 (486)
64 2lo3_A SAGA-associated factor 31.6 14 0.00048 24.3 0.7 21 21-41 15-35 (44)
65 1a4s_A ALDH, betaine aldehyde 31.4 64 0.0022 29.6 5.4 39 95-133 65-103 (503)
66 1uzb_A 1-pyrroline-5-carboxyla 31.3 57 0.0019 30.0 5.1 39 95-133 81-119 (516)
67 3my7_A Alcohol dehydrogenase/a 31.2 67 0.0023 28.9 5.5 38 95-132 14-51 (452)
68 2j6l_A Aldehyde dehydrogenase 31.0 67 0.0023 29.4 5.5 39 95-133 66-104 (500)
69 3etf_A Putative succinate-semi 31.0 60 0.0021 29.2 5.1 39 95-133 36-74 (462)
70 3ros_A NAD-dependent aldehyde 30.9 57 0.0019 29.8 5.0 38 95-132 33-70 (484)
71 3sza_A Aldehyde dehydrogenase, 30.8 52 0.0018 29.9 4.6 40 94-133 24-63 (469)
72 2h5g_A Delta 1-pyrroline-5-car 30.5 54 0.0019 29.8 4.7 40 94-133 35-74 (463)
73 3jz4_A Succinate-semialdehyde 30.3 55 0.0019 29.7 4.7 39 95-133 54-92 (481)
74 3lns_A Benzaldehyde dehydrogen 30.2 45 0.0015 30.1 4.1 38 95-132 35-72 (457)
75 2o2p_A Formyltetrahydrofolate 29.9 68 0.0023 29.6 5.3 39 95-133 81-121 (517)
76 3prl_A NADP-dependent glyceral 29.7 63 0.0022 29.7 5.1 39 95-133 56-94 (505)
77 3k9d_A LMO1179 protein, aldehy 29.5 73 0.0025 28.7 5.4 39 94-132 18-56 (464)
78 2d4e_A 5-carboxymethyl-2-hydro 29.3 65 0.0022 29.7 5.1 39 95-133 71-109 (515)
79 3r64_A NAD dependent benzaldeh 29.1 66 0.0022 29.5 5.1 40 95-134 57-96 (508)
80 1k81_A EIF-2-beta, probable tr 29.0 7.9 0.00027 23.9 -0.8 19 18-36 16-34 (36)
81 4ghk_A Gamma-glutamyl phosphat 28.9 58 0.002 29.3 4.6 40 94-133 32-71 (444)
82 3pqa_A Lactaldehyde dehydrogen 28.8 57 0.002 29.9 4.6 39 95-133 41-79 (486)
83 3k2w_A Betaine-aldehyde dehydr 28.8 63 0.0021 29.6 4.9 38 95-132 57-94 (497)
84 3ju8_A Succinylglutamic semial 28.7 68 0.0023 29.2 5.1 38 95-132 49-86 (490)
85 3qan_A 1-pyrroline-5-carboxyla 28.5 75 0.0026 29.5 5.4 39 95-133 81-119 (538)
86 2ve5_A BADH, betaine aldehyde 28.2 63 0.0022 29.3 4.7 39 95-133 51-89 (490)
87 3r31_A BADH, betaine aldehyde 27.8 63 0.0022 29.8 4.7 39 95-133 59-97 (517)
88 3na7_A HP0958; flagellar bioge 27.5 14 0.00048 31.0 0.2 35 4-38 174-213 (256)
89 1uxt_A Glyceraldehyde-3-phosph 27.3 62 0.0021 29.7 4.5 38 95-132 61-99 (501)
90 3b4w_A Aldehyde dehydrogenase; 26.4 72 0.0025 29.2 4.8 39 95-133 53-93 (495)
91 2y53_A Aldehyde dehydrogenase 26.2 79 0.0027 29.1 5.1 39 95-133 50-89 (534)
92 2js3_A Uncharacterized protein 24.4 18 0.00063 26.8 0.4 21 15-35 45-65 (96)
93 3nm8_A Tyrosinase; TYPE3 coppe 23.6 49 0.0017 29.0 3.0 23 102-124 9-31 (303)
94 3ed6_A Betaine aldehyde dehydr 22.8 87 0.003 28.9 4.6 39 95-133 77-117 (520)
95 3mhs_E SAGA-associated factor 22.5 23 0.0008 26.7 0.6 21 21-41 73-93 (96)
96 1wjv_A Cell growth regulating 22.0 25 0.00084 25.7 0.6 20 23-43 11-30 (79)
97 3iwj_A Putative aminoaldehyde 20.9 1E+02 0.0035 28.2 4.7 39 95-133 52-95 (503)
98 1o04_A Aldehyde dehydrogenase, 20.6 85 0.0029 28.8 4.1 39 95-133 64-105 (500)
99 1bxs_A Aldehyde dehydrogenase; 20.6 85 0.0029 28.8 4.1 39 95-133 65-106 (501)
100 3u4j_A NAD-dependent aldehyde 20.2 1E+02 0.0035 28.6 4.5 39 95-133 68-108 (528)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=4.1e-23 Score=156.31 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 59 EKPKLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 59 ~~~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.+.++.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|.
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 86 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYR 86 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999887666 79999999999999999999999999999999999999999
Q ss_pred hcCCCCCChhHh
Q 037983 135 TSMPRFMDDEAD 146 (205)
Q Consensus 135 k~lp~e~~deaD 146 (205)
.++......|.+
T Consensus 87 ~~~~~~~~~e~~ 98 (102)
T 2co9_A 87 ASLVSKSYTDSG 98 (102)
T ss_dssp HHHTSSCCCCCS
T ss_pred hhcccccccccc
Confidence 988666555543
No 2
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=141.79 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
|+||||+|||++|++++|.+++..||.||++++|++|++||++||++|+++|++++++|+++|++|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999999999999873
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=148.34 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh------hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL------IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP------~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+..+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|
T Consensus 8 ~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 8 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp CSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45679999999999999999999999976655 7999999999999999999999999999999999999987
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.87 E-value=1.5e-22 Score=152.87 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
++.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|++|..+-
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 82 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDH 82 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45689999999999999999999999998877 79999999999999999999999999999999999999998876
Q ss_pred C
Q 037983 138 P 138 (205)
Q Consensus 138 p 138 (205)
|
T Consensus 83 P 83 (99)
T 1k99_A 83 P 83 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=6.8e-22 Score=151.94 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCC-CCCCChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 59 EKPKLVKQDSYS-DQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 59 ~~~k~~KDp~aP-KRP~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
+.+++.|||++| |||+||||+|++++|.+++..++.||+++||++|++||++||++|+++|++++++|.++|.+|..++
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~ 85 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESL 85 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345678899999 9999999999999999999888899999999999999999999999999999999999999999988
Q ss_pred C
Q 037983 138 P 138 (205)
Q Consensus 138 p 138 (205)
+
T Consensus 86 ~ 86 (108)
T 1v64_A 86 P 86 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.86 E-value=3.1e-22 Score=145.32 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=67.2
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh------hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL------IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP------~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999998876 699999999999999999999999999999999999988743
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=4.1e-22 Score=142.40 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=66.0
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
|||++||||+||||+|++++|.+++..|| .+|++++|++|++||++||++|+++|++++++|.++|.+|.
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 75 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 75 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999876665 79999999999999999999999999999999999998774
No 8
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=1.8e-21 Score=144.39 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTS 136 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~ 136 (205)
+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 69999999999999999999999886666 8999999999999999999999999999999999999999754
No 9
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.84 E-value=6.1e-22 Score=147.42 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 60 KPKLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 60 ~~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
+.+..+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~ 90 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355789999999999999999999999988776 799999999999999999999999999999999999999976
Q ss_pred c
Q 037983 136 S 136 (205)
Q Consensus 136 ~ 136 (205)
+
T Consensus 91 ~ 91 (93)
T 1cg7_A 91 T 91 (93)
T ss_dssp H
T ss_pred c
Confidence 4
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=144.65 Aligned_cols=74 Identities=18% Similarity=0.106 Sum_probs=69.6
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMP 138 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~lp 138 (205)
.+|++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..+++
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999986666 899999999999999999999999999999999999999988873
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=4.5e-22 Score=147.33 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH
Q 037983 61 PKLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL 131 (205)
Q Consensus 61 ~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~ 131 (205)
.++.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.
T Consensus 12 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 12 EGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999987766 79999999999999999999999999999999987764
No 12
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.84 E-value=8.1e-22 Score=147.55 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCCCCChHHhHHHHhHHHhcCCC------hhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 60 KPKLVKQDSYSDQTRSPFRIFMETFVETCGSRE------LIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 60 ~~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~n------P~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.+||++||||+||||+|++++|.+++..| ..||+++||++|++||++||++|+++|++++++|.++|.+|
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999887554 46999999999999999999999999999999999999999
Q ss_pred Hhc
Q 037983 134 VTS 136 (205)
Q Consensus 134 ~k~ 136 (205)
..+
T Consensus 93 ~~~ 95 (97)
T 2lhj_A 93 AQR 95 (97)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 13
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-21 Score=142.20 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHH
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALL 131 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~ 131 (205)
+..+||++||||+||||+|++++|.+++..+| .||++++|++|++||++||++|+++|++++++|.+++-
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P 83 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNP 83 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 56789999999999999999999999987666 79999999999999999999999999999999988753
No 14
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.83 E-value=3.1e-21 Score=137.51 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=61.9
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
||++||||+||||+|++++|.+++..|| .||++++|++|++||++||++|+++|++++++|.+++.+|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 72 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNY 72 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 6899999999999999999999986665 7999999999999999999999999999999999987655
No 15
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.82 E-value=5.7e-21 Score=134.29 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=60.6
Q ss_pred CCCCCCChHHhHHHHhHHHhcCCCh------hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 69 YSDQTRSPFRIFMETFVETCGSREL------IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 69 aPKRP~SAF~lF~~e~Rk~~K~~nP------~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+||||+||||+|++++|.+++..|| .||++++|++|++||++||++|+++|++++++|.++|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999876655 8999999999999999999999999999999999999754
No 16
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.82 E-value=9.3e-21 Score=143.55 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCC---ChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSR---ELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~---nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
+.||||+||||+|++++|..++.. +.+||+|+||++|++||++||+||+++|++++++|+++|+.|....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 689999999999999999998655 4489999999999999999999999999999999999999996643
No 17
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=5.3e-20 Score=139.71 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCCCCCCCCChHHhHHHHhHHH--hcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037983 66 QDSYSDQTRSPFRIFMETFVET--CGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFM 141 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~--~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~lp~e~ 141 (205)
..++||||+||||+|+++++.. +++.+..||+|+||++|++|+++||+||+++|++++++|.++|..|..+++++.
T Consensus 5 ~~~~PKrP~say~lF~~e~~~~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~ 82 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQD 82 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 5679999999999999999863 233455899999999999999999999999999999999999999999996653
No 18
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.81 E-value=3.1e-20 Score=132.05 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=62.7
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
.++||||+||||+|++++|.+++..|| .||++++|++|++||+ |++|+++|++++++|.++|.+|..
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~ 71 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEA 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999987666 8999999999999998 999999999999999999999965
No 19
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.8e-20 Score=133.31 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=63.2
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTS 136 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~ 136 (205)
|++||||+||||+|++++|.+++..|| .||++++|++|++| +||++|+++|++++++|.++|.+|..+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 789999999999999999999987766 79999999999999 899999999999999999999988543
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.80 E-value=7.3e-20 Score=146.30 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
++.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999987666 899999999999999999999999999999999999999864
No 21
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.80 E-value=3.6e-20 Score=135.41 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.|++||||+||||+|++++|.+++..|| .||++++|++|++||++||++|+++|++++++|..++.+|.
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 73 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 4789999999999999999999876666 79999999999999999999999999999999999988774
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=3.3e-20 Score=129.86 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.||||+||||+|++++|.+++..+| .+|++++|++|++||++||++|+++|++++++|.+++.+|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 70 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 46899999999999999999988877 7999999999999999999999999999999999887665
No 23
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-20 Score=136.42 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
.|+++||||+||||+|++++|.+++..|| .+|+++||++|++||++||++|+++|++++++|.++|.+|.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk 76 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR 76 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 48999999999999999999999886665 79999999999999999999999999999999998877663
No 24
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.79 E-value=4.8e-20 Score=140.68 Aligned_cols=70 Identities=14% Similarity=0.290 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.|++++||||+||||+|++++|.+++..+| .||++++|++|++||++||++|+++|++++++|.+++..|
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 97 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDY 97 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 569999999999999999999999987766 7999999999999999999999999999999999998876
No 25
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=8.6e-20 Score=131.35 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=63.2
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
+.||||+||||+|++++|.+++..+| .||+++||++|++||++||++|+++|++++++|..+|.+|.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK 71 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 47999999999999999999988777 79999999999999999999999999999999999988774
No 26
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=8.4e-20 Score=154.36 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
.+||++||||+||||+|++++|.+++..+|.||+++||++|++||++||+||+++|++++++|.++|.+|..++
T Consensus 109 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 109 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSSCSSHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCcccccchhhhhHHHHHHhhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999887
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=143.58 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 61 PKLVKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 61 ~k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
.++.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|.+|..
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999876655 899999999999999999999999999999999999999864
No 28
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.78 E-value=7.6e-20 Score=132.22 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.++.||||+||||+|++++|..++..+| .||++++|++|++||++||++|+++|++++++|..++.+|
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 74 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 74 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999986666 8999999999999999999999999999999999998776
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=1.7e-19 Score=129.11 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.||||+||||+|++++|.+++..+| .||++++|++|++||++||++|+++|++++++|.+++.+|
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Y 70 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDY 70 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999988877 7999999999999999999999999999999999988766
No 30
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-20 Score=139.82 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCCCCCCCCCChHHhHHHHhHHHhcCC--ChhHHHHHH---HHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 65 KQDSYSDQTRSPFRIFMETFVETCGSR--ELIDIDQKG---FEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 65 KDp~aPKRP~SAF~lF~~e~Rk~~K~~--nP~EIsK~l---GE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
.++++||||+||||+|++++|.+++.. +..||+++| |++|++|+++||+||+++|++++++|++++....++.
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~~~~~~ 83 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEKQK 83 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 589999999999999999999998744 458999999 9999999999999999999999999999987655554
No 31
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.4e-19 Score=155.22 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCChhHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSRELIDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSM 137 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~l 137 (205)
.+||++||||+||||+|++++|.+++..||.||+++||++|++|+++||+||+++|++++++|+++|.+|..++
T Consensus 141 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 141 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999887
No 32
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=2e-19 Score=129.98 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
++.||||+||||+|++++|.+++..+| .||++++|++|++||++||++|+++|++++++|..++-+|
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Y 72 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 72 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 468999999999999999999987776 7999999999999999999999999999999999876554
No 33
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=3e-19 Score=130.50 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=62.0
Q ss_pred CCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 68 SYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 68 ~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
..||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|..++..|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 36999999999999999999876655 79999999999999999999999999999999999988774
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=141.65 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCCCChHHhHHHHhHHHhcCCCh------hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 037983 62 KLVKQDSYSDQTRSPFRIFMETFVETCGSREL------IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVT 135 (205)
Q Consensus 62 k~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP------~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k 135 (205)
+..+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|++++++|.++|..|..
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34679999999999999999999999875544 799999999999999999999999999999999999999865
Q ss_pred c
Q 037983 136 S 136 (205)
Q Consensus 136 ~ 136 (205)
.
T Consensus 88 ~ 88 (173)
T 2yrq_A 88 P 88 (173)
T ss_dssp C
T ss_pred h
Confidence 4
No 35
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=126.72 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCC-----hhHHHHHHHHHhhcCChhhhhhHHHHHHHHH
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSRE-----LIDIDQKGFEKWKNMSKEERQPYVIKAEMLD 123 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~n-----P~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K 123 (205)
++++||||+||||+|++++|.+++..| ..||+|+||++|++||++||+||+++|+.+.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999987554 4799999999999999999999999999873
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=146.77 Aligned_cols=77 Identities=6% Similarity=0.086 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 037983 64 VKQDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPR 139 (205)
Q Consensus 64 ~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~lp~ 139 (205)
.+||++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|+.++++|+++|..|..++++
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p 115 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 115 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 358999999999999999999999987777 8999999999999999999999999999999999999999988865
Q ss_pred C
Q 037983 140 F 140 (205)
Q Consensus 140 e 140 (205)
.
T Consensus 116 ~ 116 (238)
T 3tmm_A 116 S 116 (238)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-19 Score=134.05 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCChHHhHHHHhHHHhcCCChh-H--HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHH
Q 037983 63 LVKQDSYSDQTRSPFRIFMETFVETCGSRELI-D--IDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRA 129 (205)
Q Consensus 63 ~~KDp~aPKRP~SAF~lF~~e~Rk~~K~~nP~-E--IsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~ke 129 (205)
..||||+||||+||||||++++|.+++.+||. . ++-+ +++|++|+++||+||+++|++++++|..+
T Consensus 16 ~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eI-se~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 16 WEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQI-AKLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999882 1 3333 39999999999999999999999999854
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=8.4e-18 Score=142.11 Aligned_cols=76 Identities=7% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037983 66 QDSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEVTSMPRFM 141 (205)
Q Consensus 66 Dp~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~k~lp~e~ 141 (205)
.|++||||+||||+|++++|.+++..|| .||+++||++|++||++||++|+++|+.++++|.++|..|..++++..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q 85 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQ 85 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHH
Confidence 5789999999999999999999987776 899999999999999999999999999999999999999998886543
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.57 E-value=1.1e-15 Score=121.93 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=61.8
Q ss_pred CCCCCCCCChHHhHHHHhHHHhcCCCh----hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 67 DSYSDQTRSPFRIFMETFVETCGSREL----IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 67 p~aPKRP~SAF~lF~~e~Rk~~K~~nP----~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
++.||||+||||+|+++.|..+...|| .||+++||++|++||++||++|+++|+.++++|..+|..|.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 73 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 678999999999999999887665554 89999999999999999999999999999999999987764
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=73.05 E-value=2 Score=35.54 Aligned_cols=44 Identities=14% Similarity=-0.003 Sum_probs=35.0
Q ss_pred hhHHH-HHHHHHhhcCChhhhhhHHHHHHH-HHHHHHHHHHHHHhc
Q 037983 93 LIDID-QKGFEKWKNMSKEERQPYVIKAEM-LDAAHRRALLEEVTS 136 (205)
Q Consensus 93 P~EIs-K~lGE~WKsLSdeEKkPY~dkA~e-~K~~Y~kem~e~~k~ 136 (205)
...++ ..+|..|+.+|++|++-|.+.... +...|...+.+|..+
T Consensus 74 ~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 74 FKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp HHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34454 457999999999999999998777 577788888887643
No 41
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=70.46 E-value=1.5 Score=33.76 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=21.6
Q ss_pred hhhhCCCCCccccchhhccccchhhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALVD 39 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~d 39 (205)
|+.|-.+|..|..|+.||..||.+-..
T Consensus 46 Al~ri~~G~syG~C~~CGe~Ip~~RL~ 72 (108)
T 2kgo_A 46 ARGEIPRGESLDECEECGAPIPQARRE 72 (108)
T ss_dssp HTSCSCSSSCCSBCTTTCCBCCHHHHH
T ss_pred HHHHHhcCCcCceecccCCcccHHHHh
Confidence 356777896688899999999998444
No 42
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=59.94 E-value=1.9 Score=32.64 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=19.5
Q ss_pred hhhhCCCCCccccchhhccccchhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALV 38 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~ 38 (205)
|+.|-.+||. ..|+.||..||.+-.
T Consensus 72 Al~ri~~g~y-g~C~~Cg~~I~~~Rl 96 (112)
T 2kq9_A 72 ALARIASGTF-GTCVKCGKRISEDRL 96 (112)
T ss_dssp HHHHHHHTCC-SEETTTTEECCHHHH
T ss_pred HHHhhhCCCc-CeeCCCCCcccHHHH
Confidence 4677777875 559999999998843
No 43
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=58.06 E-value=2.8 Score=33.53 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=20.5
Q ss_pred hhhhCCCCCccccchhhccccchhhhh
Q 037983 13 AIRRAPDGSAFEKCDRCEAMVPIALVD 39 (205)
Q Consensus 13 a~~Ra~DgSaF~~Ce~c~k~vpval~d 39 (205)
||.|-.+||.- .|+.||..||.+-..
T Consensus 102 Al~ri~~g~yg-~C~~Cg~~Ip~~Rl~ 127 (151)
T 1tjl_A 102 TLKKVEDEDFG-YCESCGVEIGIRRLE 127 (151)
T ss_dssp HHHHHHTTCCS-BCSSSSCBCCHHHHH
T ss_pred HHHHHhCCCCc-eeCCCCCcchHHHHh
Confidence 57787888754 599999999998443
No 44
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=53.95 E-value=4.7 Score=25.64 Aligned_cols=18 Identities=28% Similarity=0.746 Sum_probs=14.5
Q ss_pred cchhhccccchhhhhhhH
Q 037983 25 KCDRCEAMVPIALVDMHE 42 (205)
Q Consensus 25 ~Ce~c~k~vpval~dmh~ 42 (205)
.|..||+.||+....=|.
T Consensus 11 ~C~~C~~~i~~~~~~EH~ 28 (39)
T 2i5o_A 11 PCEKCGSLVPVWDMPEHM 28 (39)
T ss_dssp ECTTTCCEEEGGGHHHHH
T ss_pred ccccccCcCCcccccchh
Confidence 599999999997665553
No 45
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=39.76 E-value=35 Score=31.45 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.+...|+.||.+||..+..+++++-+++..++.+.
T Consensus 51 ~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (490)
T 2wme_A 51 QSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457778899999999999999999999999998888764
No 46
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=38.06 E-value=40 Score=30.17 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.+||..+..+.+++-+++..++.+.
T Consensus 20 v~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 59 (427)
T 1o20_A 20 AKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEA 59 (427)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567888889999999999999999999999998887764
No 47
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=36.27 E-value=25 Score=31.91 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.+...|+.++.+||..+..+++++-+++..++.+.
T Consensus 35 ~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 73 (474)
T 4h7n_A 35 NRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEA 73 (474)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999988888887653
No 48
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=35.15 E-value=51 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 57 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 95 (484)
T 3ifg_A 57 EAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALI 95 (484)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999988888887753
No 49
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=34.59 E-value=53 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..+++++-+++..++.+.
T Consensus 69 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 107 (498)
T 4f3x_A 69 DAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAAL 107 (498)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 447778889999999999999999999888888887763
No 50
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=34.09 E-value=50 Score=29.97 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..++++.-+++..++.+.
T Consensus 51 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (485)
T 4dng_A 51 DIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMM 89 (485)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999888888887753
No 51
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=34.08 E-value=49 Score=29.97 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+.++.-+++..++.+.
T Consensus 52 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 90 (478)
T 3ty7_A 52 EAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQA 90 (478)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457778889999999999999999999888888887753
No 52
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=33.57 E-value=50 Score=30.06 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 20 v~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 59 (468)
T 1vlu_A 20 AKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEA 59 (468)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999988888887764
No 53
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=33.23 E-value=51 Score=30.07 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-.++..++.+.
T Consensus 55 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (487)
T 2w8n_A 55 RAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARI 93 (487)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999999999998887753
No 54
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=33.07 E-value=58 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..+++++-+++..++.+.
T Consensus 70 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (528)
T 3v4c_A 70 EAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEI 108 (528)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 457788889999999999999999999888888887753
No 55
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=32.78 E-value=61 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+.+++-+++..++.+
T Consensus 71 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 108 (521)
T 4e4g_A 71 ESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAE 108 (521)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888999999999999999999998888888776
No 56
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=32.72 E-value=48 Score=30.08 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+
T Consensus 47 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 84 (475)
T 1euh_A 47 ASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGA 84 (475)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677788999999999999999999999999888775
No 57
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=32.43 E-value=53 Score=30.26 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..+++++-+++..++.+.
T Consensus 77 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 115 (504)
T 3ek1_A 77 DASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALI 115 (504)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778889999999999999999999988888887753
No 58
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=32.26 E-value=60 Score=29.77 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 70 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (497)
T 3i44_A 70 NAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKT 108 (497)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999988888887753
No 59
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=32.25 E-value=49 Score=30.04 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+++++-.++..++.+
T Consensus 51 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 88 (479)
T 2imp_A 51 DAAERAQPEWEALPAIERASWLRKISAGIRERASEISA 88 (479)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999888776
No 60
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=32.12 E-value=49 Score=30.36 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 37 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 75 (510)
T 1ez0_A 37 TAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIAR 75 (510)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456777889999999999999999999999999887764
No 61
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=31.87 E-value=62 Score=29.69 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.+||..+..+++++-+++..++.+
T Consensus 67 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 104 (495)
T 1wnd_A 67 RAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAE 104 (495)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999888775
No 62
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=31.85 E-value=14 Score=31.35 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=16.0
Q ss_pred ccccchhhccccchhhhhhh
Q 037983 22 AFEKCDRCEAMVPIALVDMH 41 (205)
Q Consensus 22 aF~~Ce~c~k~vpval~dmh 41 (205)
.|-+|+.|||-|-|..+.-|
T Consensus 153 QFYKCe~CgKYvDId~~~~H 172 (226)
T 2czr_A 153 QFYKCEECGKYVDIENLEAH 172 (226)
T ss_dssp EEEECTTTCCEEEGGGHHHH
T ss_pred EEEehhhcCceecHHHHHHH
Confidence 47899999999977766555
No 63
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=31.62 E-value=55 Score=29.82 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 50 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 88 (486)
T 1t90_A 50 QTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHL 88 (486)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999998887753
No 64
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.61 E-value=14 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.542 Sum_probs=15.1
Q ss_pred Cccccchhhccccchhhhhhh
Q 037983 21 SAFEKCDRCEAMVPIALVDMH 41 (205)
Q Consensus 21 SaF~~Ce~c~k~vpval~dmh 41 (205)
.-|-.|++||+.|++.-|--|
T Consensus 15 ~~YRvC~~CgkPi~lsAIvdH 35 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALTAIVDH 35 (44)
T ss_dssp CCEEECTTTCCEEETTTHHHH
T ss_pred ccchhhcccCCcchHHHHHHH
Confidence 446789999999987643333
No 65
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=31.37 E-value=64 Score=29.61 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..+++++-+++..++.+.
T Consensus 65 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 103 (503)
T 1a4s_A 65 QSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKL 103 (503)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777789999999999999999999999998887763
No 66
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=31.34 E-value=57 Score=30.00 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|.-+..+++++-.++..++.+.
T Consensus 81 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 119 (516)
T 1uzb_A 81 EAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEAT 119 (516)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999999999998887763
No 67
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=31.24 E-value=67 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|..++.+||.....++++.-+++..++.+
T Consensus 14 ~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~ 51 (452)
T 3my7_A 14 ARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQ 51 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45777889999999999999999999988888877765
No 68
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=31.02 E-value=67 Score=29.38 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-.++..++.+.
T Consensus 66 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 104 (500)
T 2j6l_A 66 KKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSL 104 (500)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999888764
No 69
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=30.95 E-value=60 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+.++.-+++..++.+.
T Consensus 36 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 74 (462)
T 3etf_A 36 SLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQC 74 (462)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999888888887753
No 70
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=30.89 E-value=57 Score=29.84 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+
T Consensus 33 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 70 (484)
T 3ros_A 33 NLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAK 70 (484)
T ss_dssp HHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45777888999999999999999999998888888775
No 71
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=30.76 E-value=52 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+.+++-+++..++.+.
T Consensus 24 v~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (469)
T 3sza_A 24 VKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGA 63 (469)
T ss_dssp HHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557788889999999999999999999988888887753
No 72
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=30.53 E-value=54 Score=29.80 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 35 v~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 74 (463)
T 2h5g_A 35 GEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLA 74 (463)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3557778889999999999999999999988888887764
No 73
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=30.34 E-value=55 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..++++.-+++..++.+.
T Consensus 54 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 92 (481)
T 3jz4_A 54 DAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARL 92 (481)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999888888877753
No 74
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=30.25 E-value=45 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++...+.|+.++.++|..+..+.+++-+++..++.+
T Consensus 35 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 72 (457)
T 3lns_A 35 SAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYS 72 (457)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44777888999999999999999999998888888775
No 75
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=29.94 E-value=68 Score=29.65 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=33.7
Q ss_pred HHHHHHHH--HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE--KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE--~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.++|..+..+++++-+++..++.+.
T Consensus 81 ~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 121 (517)
T 2o2p_A 81 AAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATI 121 (517)
T ss_dssp HHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44677777 8999999999999999999999998887763
No 76
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=29.69 E-value=63 Score=29.71 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 56 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 94 (505)
T 3prl_A 56 QGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGEL 94 (505)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777889999999999999999999988888887753
No 77
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=29.52 E-value=73 Score=28.74 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
.+.++.....|+.++.++|.....++++.-.++..++.+
T Consensus 18 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 56 (464)
T 3k9d_A 18 IESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAK 56 (464)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355788889999999999999999999988888888775
No 78
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=29.30 E-value=65 Score=29.67 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.+||..+..+++++-.++..++.+.
T Consensus 71 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 109 (515)
T 2d4e_A 71 KAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVM 109 (515)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999999999998887763
No 79
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=29.08 E-value=66 Score=29.51 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEEV 134 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~~ 134 (205)
+.++.....|+.++.++|..+..+.++.-+++..++.+..
T Consensus 57 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~ 96 (508)
T 3r64_A 57 EAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWL 96 (508)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577788899999999999999999999999988888643
No 80
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=29.04 E-value=7.9 Score=23.91 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.4
Q ss_pred CCCCccccchhhccccchh
Q 037983 18 PDGSAFEKCDRCEAMVPIA 36 (205)
Q Consensus 18 ~DgSaF~~Ce~c~k~vpva 36 (205)
.++..|-+|+.||..-||.
T Consensus 16 ~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 16 EGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp ETTEEEEEEETTTEEEEEC
T ss_pred eCCcEEEEhhcCCCccccc
Confidence 4688999999999988875
No 81
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=28.91 E-value=58 Score=29.27 Aligned_cols=40 Identities=8% Similarity=-0.075 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 94 IDIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 94 ~EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
.+.++.....|+.++.++|..+..++++.-.++..++.+.
T Consensus 32 v~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 71 (444)
T 4ghk_A 32 GRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAA 71 (444)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4557788889999999999999999999988888888764
No 82
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=28.81 E-value=57 Score=29.85 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+.+++-+++..++.+.
T Consensus 41 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 79 (486)
T 3pqa_A 41 DTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKI 79 (486)
T ss_dssp HHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999999999999888888887753
No 83
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=28.77 E-value=63 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+
T Consensus 57 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 94 (497)
T 3k2w_A 57 EVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAP 94 (497)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999998888887765
No 84
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=28.67 E-value=68 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.....|+.++.++|..+..+.+++-+++..++.+
T Consensus 49 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 86 (490)
T 3ju8_A 49 CAAREAFPAWARRPLEQRIELLERFAATLKSRADELAR 86 (490)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999988888887775
No 85
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=28.45 E-value=75 Score=29.48 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 81 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 119 (538)
T 3qan_A 81 QSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAW 119 (538)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999988888887763
No 86
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=28.21 E-value=63 Score=29.34 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+.++.-+++..++.+.
T Consensus 51 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 89 (490)
T 2ve5_A 51 QSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999888888887753
No 87
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=27.82 E-value=63 Score=29.85 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFEKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.....|+.++.++|..+..+++++-+++..++.+.
T Consensus 59 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 97 (517)
T 3r31_A 59 ASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTL 97 (517)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778889999999999999999999988888887753
No 88
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.48 E-value=14 Score=31.03 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=25.4
Q ss_pred CcchhhhhhhhhhCCCCCcccc-----chhhccccchhhh
Q 037983 4 QPRTRKRVHAIRRAPDGSAFEK-----CDRCEAMVPIALV 38 (205)
Q Consensus 4 ~p~~rkrv~a~~Ra~DgSaF~~-----Ce~c~k~vpval~ 38 (205)
||+.-++-+.||+..+|.|.+. |.||.-.+|...+
T Consensus 174 ~~~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~ 213 (256)
T 3na7_A 174 EPKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIY 213 (256)
T ss_dssp CHHHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHH
Confidence 4555555566777668887764 9999999998744
No 89
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=27.26 E-value=62 Score=29.69 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=32.8
Q ss_pred HHHHHHHH-HhhcCChhhhhhHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE-KWKNMSKEERQPYVIKAEMLDAAHRRALLE 132 (205)
Q Consensus 95 EIsK~lGE-~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e 132 (205)
+.++.... .|+.++.+||..+..+++++-.++..++.+
T Consensus 61 ~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 99 (501)
T 1uxt_A 61 DVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAE 99 (501)
T ss_dssp HHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34666777 899999999999999999999999888775
No 90
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=26.44 E-value=72 Score=29.19 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHH--HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE--KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE--~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.+||..+..+++++-.++..++.+.
T Consensus 53 ~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 93 (495)
T 3b4w_A 53 AAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKL 93 (495)
T ss_dssp HHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777 8999999999999999999999998887753
No 91
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=26.22 E-value=79 Score=29.13 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHHHHHH-HHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGF-EKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lG-E~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++... ..|+.++.++|..+..+++++-+++..++.+.
T Consensus 50 ~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (534)
T 2y53_A 50 SFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAI 89 (534)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567774 88999999999999999999999998887764
No 92
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=24.45 E-value=18 Score=26.85 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=17.9
Q ss_pred hhCCCCCccccchhhccccch
Q 037983 15 RRAPDGSAFEKCDRCEAMVPI 35 (205)
Q Consensus 15 ~Ra~DgSaF~~Ce~c~k~vpv 35 (205)
.-..||-|-..|..||.+||-
T Consensus 45 vseedGGA~NqCklC~ASVpW 65 (96)
T 2js3_A 45 VSEEDGGAHNQCKLCGASVPW 65 (96)
T ss_dssp EECSSSCEEEEETTSSCEEET
T ss_pred HHHHhCCccccCcccCccchh
Confidence 335799999999999999974
No 93
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=23.60 E-value=49 Score=28.99 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHhhcCChhhhhhHHHHHHHHHH
Q 037983 102 EKWKNMSKEERQPYVIKAEMLDA 124 (205)
Q Consensus 102 E~WKsLSdeEKkPY~dkA~e~K~ 124 (205)
..|+.||.+||+.|++....++.
T Consensus 9 ke~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 9 KNVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cchHHCCHHHHHHHHHHHHHHHh
Confidence 46999999999999999888876
No 94
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=22.80 E-value=87 Score=28.94 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred HHHHHHH--HHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGF--EKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lG--E~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++... ..|+.++.++|..+..+++++-+++..++.+.
T Consensus 77 ~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 117 (520)
T 3ed6_A 77 LAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARL 117 (520)
T ss_dssp HHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4467777 78999999999999999999888888887753
No 95
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=22.55 E-value=23 Score=26.73 Aligned_cols=21 Identities=14% Similarity=0.542 Sum_probs=16.4
Q ss_pred Cccccchhhccccchhhhhhh
Q 037983 21 SAFEKCDRCEAMVPIALVDMH 41 (205)
Q Consensus 21 SaF~~Ce~c~k~vpval~dmh 41 (205)
+-|-.|..||+.|++--|+-|
T Consensus 73 ~~YRvCn~CGkPI~l~AIvDH 93 (96)
T 3mhs_E 73 IQYRVCEKCGKPLALTAIVDH 93 (96)
T ss_dssp CCCEEETTTCCEECGGGTTTC
T ss_pred ccchhhhccCCceeHHHHHHH
Confidence 678899999999987644444
No 96
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=21.99 E-value=25 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=17.7
Q ss_pred cccchhhccccchhhhhhhHH
Q 037983 23 FEKCDRCEAMVPIALVDMHEC 43 (205)
Q Consensus 23 F~~Ce~c~k~vpval~dmh~C 43 (205)
|+ |+.||-.|--.-+|-|..
T Consensus 11 F~-C~~Cgd~lKK~kv~~H~~ 30 (79)
T 1wjv_A 11 FT-CNACGESVKKIQVEKHVS 30 (79)
T ss_dssp EE-ESSSCCEEETTHHHHHHH
T ss_pred EE-cCCCCCeeecccchhHHh
Confidence 55 999999999999999964
No 97
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=20.94 E-value=1e+02 Score=28.22 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=32.6
Q ss_pred HHHHHHHH-----HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE-----KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE-----~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.++|..+..+++++-+++..++.+.
T Consensus 52 ~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 95 (503)
T 3iwj_A 52 AAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKL 95 (503)
T ss_dssp HHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667 8999999999999999999888888887753
No 98
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=20.62 E-value=85 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHH---HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE---KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE---~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.+||..+..+.+++-+++..++.+.
T Consensus 64 ~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 105 (500)
T 1o04_A 64 KAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAAL 105 (500)
T ss_dssp HHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667 8999999999999999999999998887763
No 99
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=20.56 E-value=85 Score=28.80 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHHHHHH---HhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGFE---KWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lGE---~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++.... .|+.++.+||..+..+++++-+++..++.+.
T Consensus 65 ~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 106 (501)
T 1bxs_A 65 KAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATM 106 (501)
T ss_dssp HHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666 8999999999999999999999998887763
No 100
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=20.25 E-value=1e+02 Score=28.55 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=32.9
Q ss_pred HHHHHHH--HHhhcCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 037983 95 DIDQKGF--EKWKNMSKEERQPYVIKAEMLDAAHRRALLEE 133 (205)
Q Consensus 95 EIsK~lG--E~WKsLSdeEKkPY~dkA~e~K~~Y~kem~e~ 133 (205)
+.++... ..|+.++.++|..+..+++++-+++..++.+.
T Consensus 68 ~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 108 (528)
T 3u4j_A 68 AAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALI 108 (528)
T ss_dssp HHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777 67999999999999999999888888887753
Done!