BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037984
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NX4|A Chain A, The Crystal Structure Of Athe Putative Tetr-Family
           Transcriptional Regulator Rha06780 From Rhodococcus Sp.
           Rha1.
 pdb|2NX4|B Chain B, The Crystal Structure Of Athe Putative Tetr-Family
           Transcriptional Regulator Rha06780 From Rhodococcus Sp.
           Rha1.
 pdb|2NX4|C Chain C, The Crystal Structure Of Athe Putative Tetr-Family
           Transcriptional Regulator Rha06780 From Rhodococcus Sp.
           Rha1.
 pdb|2NX4|D Chain D, The Crystal Structure Of Athe Putative Tetr-Family
           Transcriptional Regulator Rha06780 From Rhodococcus Sp.
           Rha1
          Length = 194

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 79  KAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVS 116
           +AA +  +   AG   G+LS+Y AGK + L  +   +S
Sbjct: 29  EAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHIS 66


>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
          Major
 pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
          Major
          Length = 167

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 4  INCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSF 53
          I+CC P+  +   F + +L   +P    T   EL++R  R L+ VC  ++
Sbjct: 10 IDCCDPQKPSRVLFHFLILDAPSPSNLPTYIKELQHRGVRHLVRVCGPTY 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,890,073
Number of Sequences: 62578
Number of extensions: 169101
Number of successful extensions: 297
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)