BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037984
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C4L7S8|ARLY_TOLAT Argininosuccinate lyase OS=Tolumonas auensis (strain DSM 9187 /
           TA4) GN=argH PE=3 SV=1
          Length = 461

 Score = 35.8 bits (81), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 107 RLSVTIPSVSTNALGYGAFLGLCANMRYQLLC---GFDRAVINHFDVIG-----VALFLS 158
           RL   +  ++T+ LG GA  G    +  Q+L    GFDRA  N  D +      + L  S
Sbjct: 182 RLQDALKRLNTSPLGSGALAGTAYAIDRQVLALDLGFDRATRNSLDSVSDRDHVIELMSS 241

Query: 159 TALRSLPLSLLRICLLIYISIYIDRLFWSNQIT 191
            AL  + LS     L+ Y S     +  S+++T
Sbjct: 242 AALSMIHLSRFAEDLIFYASGEAGFIELSDKVT 274


>sp|P33390|HMC3_DESVH Protein DVU_0534 OS=Desulfovibrio vulgaris (strain Hildenborough /
           ATCC 29579 / NCIMB 8303) GN=DVU_0534 PE=3 SV=1
          Length = 388

 Score = 30.8 bits (68), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 21/40 (52%)

Query: 83  LCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGY 122
           LC V L AG    S S YL G K   S   P+++T  LGY
Sbjct: 58  LCGVALAAGGYVTSASCYLFGMKRYHSAVRPAITTAFLGY 97


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.332    0.145    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,705,953
Number of Sequences: 539616
Number of extensions: 2686681
Number of successful extensions: 6502
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6499
Number of HSP's gapped (non-prelim): 11
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)