Query 037984
Match_columns 201
No_of_seqs 99 out of 123
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 11.0 50 0.0017 28.3 -0.2 11 6-16 86-96 (226)
2 1ebo_A Ebola virus envelope pr 10.9 3.3E+02 0.011 21.0 4.5 28 164-191 74-101 (131)
3 3hht_A NitrIle hydratase alpha 10.9 51 0.0017 28.1 -0.2 12 6-17 75-86 (216)
4 2dw3_A Intrinsic membrane prot 9.8 5.1E+02 0.018 18.5 4.9 32 67-98 16-47 (77)
5 2bn5_B U1 small nuclear ribonu 9.4 92 0.0031 17.9 0.6 10 108-117 10-19 (26)
6 3a8g_A NitrIle hydratase subun 7.6 81 0.0028 26.6 -0.2 12 5-16 68-79 (207)
7 3u66_A SCIP/TSSL, putative typ 7.4 3.8E+02 0.013 21.3 3.8 67 131-198 62-132 (183)
8 2fu2_A Hypothetical protein SP 7.0 5E+02 0.017 18.7 3.9 53 126-178 35-94 (102)
9 1pp9_J Ubiquinol-cytochrome C 5.9 4.3E+02 0.015 17.9 2.8 23 20-42 28-50 (62)
10 2nrg_A Intrinsic membrane prot 5.8 8.4E+02 0.029 17.6 5.2 32 67-98 17-48 (82)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=10.98 E-value=50 Score=28.28 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=7.3
Q ss_pred cchhhhhcCch
Q 037984 6 CCCPRMLADPA 16 (201)
Q Consensus 6 ~~r~RllADP~ 16 (201)
+||+|||+||.
T Consensus 86 ~FK~rLL~D~~ 96 (226)
T 3qyh_A 86 AYKARLLADGT 96 (226)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHCHH
Confidence 46777777764
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=10.93 E-value=3.3e+02 Score=20.96 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=19.7
Q ss_pred cccchhhHHHHHHhcccccccccccchH
Q 037984 164 LPLSLLRICLLIYISIYIDRLFWSNQIT 191 (201)
Q Consensus 164 ~Nn~lG~~~~v~~~G~~~~~~~~~~~~~ 191 (201)
+=.-|||...+.=-.+-..||.++.+++
T Consensus 74 LL~RWGGTC~iLGPdCcIep~DwtkNIt 101 (131)
T 1ebo_A 74 LLQRWGGTCHILGPDCRIEPHDWTKNIT 101 (131)
T ss_dssp HTGGGTCHHHHHGGGGGCCCCCCHHHHH
T ss_pred HHHHhCCcceecCCccccCHHHHhhhHH
Confidence 3456899887755556667888877765
No 3
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=10.87 E-value=51 Score=28.06 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.7
Q ss_pred cchhhhhcCchh
Q 037984 6 CCCPRMLADPAF 17 (201)
Q Consensus 6 ~~r~RllADP~F 17 (201)
+||+|||+||.=
T Consensus 75 ~FK~rLL~Dp~a 86 (216)
T 3hht_A 75 AFKQRLLEDSET 86 (216)
T ss_dssp HHHHHHHHCHHH
T ss_pred HHHHHHHHCHHH
Confidence 478888888753
No 4
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=9.76 E-value=5.1e+02 Score=18.54 Aligned_cols=32 Identities=9% Similarity=-0.107 Sum_probs=22.8
Q ss_pred cchhhhHHHHHhhchhhhhhhhhHhhhhHHHH
Q 037984 67 FDLQKRIHSLFYKAAELCMVGLTAGAVQGSLS 98 (201)
Q Consensus 67 fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~ls 98 (201)
..+.-=++-...||+-+++|+++++...-...
T Consensus 16 ~rLr~~i~~qMlkGAg~AAv~f~~~~~~lv~l 47 (77)
T 2dw3_A 16 TNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFF 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 33444455667899999999999887665444
No 5
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=9.39 E-value=92 Score=17.91 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=7.2
Q ss_pred CCCCCCchhh
Q 037984 108 LSVTIPSVST 117 (201)
Q Consensus 108 ~s~~~ppv~~ 117 (201)
-|+|+|||+.
T Consensus 10 fsvppppi~g 19 (26)
T 2bn5_B 10 FSVPPPPILG 19 (26)
T ss_dssp CSCCCCSCCC
T ss_pred ecCCCCCccc
Confidence 4678888864
No 6
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=7.64 E-value=81 Score=26.64 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=8.0
Q ss_pred ccchhhhhcCch
Q 037984 5 NCCCPRMLADPA 16 (201)
Q Consensus 5 ~~~r~RllADP~ 16 (201)
++||+|||+||.
T Consensus 68 P~Fk~rLL~D~~ 79 (207)
T 3a8g_A 68 PEFRQLLLTDGT 79 (207)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHHCHH
Confidence 347777777764
No 7
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=7.43 E-value=3.8e+02 Score=21.35 Aligned_cols=67 Identities=15% Similarity=-0.132 Sum_probs=39.5
Q ss_pred hhHHHHHHhHHHHHhhhc---chhHHHHHHHHHhhhcccchhhHHHHHHh-cccccccccccchHHhhHhhh
Q 037984 131 NMRYQLLCGFDRAVINHF---DVIGVALFLSTALRSLPLSLLRICLLIYI-SIYIDRLFWSNQITIVLMFCL 198 (201)
Q Consensus 131 NlRYQ~l~Gier~l~~~~---~~~~~~~~~s~a~R~~Nn~lG~~~~v~~~-G~~~~~~~~~~~~~~~~~~~~ 198 (201)
..||=+.+=+||.+-..- +....-.--+...|+-|..+||..|-..+ -+..+|..+ -+++-+.-+||
T Consensus 62 ~a~YalCa~lDE~vl~~~w~~~~~~~W~~~~L~~~ff~~~~gGe~fF~~L~~ll~~p~~~-~~lLE~~y~cL 132 (183)
T 3u66_A 62 IMLYAFCALLDESVLNREKTDDGWRTWQQDPLQAHFFGTLNAGEELWERIREQLKLPAPD-VAVLTCLCRTL 132 (183)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHSCHHHHHHSCSCHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCCCCCcccchhhhCcHHHHHcCCCCcHHHHHHHHHHHHhCcccC-HHHHHHHHHHH
Confidence 347777777777754331 11111222577788899999999985333 344567633 45666666665
No 8
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=7.02 E-value=5e+02 Score=18.66 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=22.1
Q ss_pred HhhhhhhHHH-----HHHhHHHHHhhh-cc-hhHHHHHHHHHhhhcccchhhHHHHHHhc
Q 037984 126 LGLCANMRYQ-----LLCGFDRAVINH-FD-VIGVALFLSTALRSLPLSLLRICLLIYIS 178 (201)
Q Consensus 126 mGvSsNlRYQ-----~l~Gier~l~~~-~~-~~~~~~~~s~a~R~~Nn~lG~~~~v~~~G 178 (201)
-.+..|..|| +-..+.+++..| +. +..+.-+...+-|..+-+.|-..+..|+|
T Consensus 35 ~~L~k~~n~~~va~kL~~~i~~Yll~h~~~~P~sl~~L~~~i~k~~~kyrg~~~~~~~l~ 94 (102)
T 2fu2_A 35 SQLEKEGMSSLLATKIDSLINQYILTHQFDAPKSIFDLSRLVKTKASHYKGTAISAIMLG 94 (102)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC---------------
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455564444 445666775544 42 33455557888999999999999999988
No 9
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=5.86 E-value=4.3e+02 Score=17.94 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHhhhhHHHHHHHHhhcCC
Q 037984 20 KLLVEQAPIIGCTVWWELENRKD 42 (201)
Q Consensus 20 Kl~~E~~i~i~~~~~~E~~~R~~ 42 (201)
=.+.|.+.|.++.-+||.-+||.
T Consensus 28 af~fe~~~d~~~d~iw~~~NkGK 50 (62)
T 1pp9_J 28 ALFFERAFDQGADAIYEHINEGK 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhHHHHHHHHhccCCC
Confidence 35689999999999999999986
No 10
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=5.76 E-value=8.4e+02 Score=17.59 Aligned_cols=32 Identities=9% Similarity=-0.107 Sum_probs=23.2
Q ss_pred cchhhhHHHHHhhchhhhhhhhhHhhhhHHHH
Q 037984 67 FDLQKRIHSLFYKAAELCMVGLTAGAVQGSLS 98 (201)
Q Consensus 67 fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~ls 98 (201)
..+.-=++-...||+-+++|+++++...-...
T Consensus 17 ~rLr~wi~~qMlKGAG~AAv~fl~~~~~lv~l 48 (82)
T 2nrg_A 17 TNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFF 48 (82)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 44444456667899999999999887655444
Done!