Query 037984
Match_columns 201
No_of_seqs 99 out of 123
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037984.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037984hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 15.5 27 0.002 22.1 1.2 21 5-25 36-56 (57)
2 d1ldna1 c.2.1.5 (A:15-162) Lac 7.7 33 0.0024 24.4 -0.5 24 79-104 5-28 (148)
3 d3cx5i1 f.23.14.1 (I:4-58) Sub 7.7 1.5E+02 0.011 18.4 2.8 22 21-42 23-44 (55)
4 d1v29a_ d.149.1.1 (A:) Cobalt- 7.6 37 0.0027 26.6 -0.2 11 6-16 65-75 (203)
5 d1ugpa_ d.149.1.1 (A:) Cobalt- 7.4 40 0.0029 26.4 -0.2 11 6-16 66-76 (203)
6 d1rkxa_ c.2.1.2 (A:) CDP-gluco 7.4 45 0.0033 25.2 0.1 26 77-103 5-30 (356)
7 d2jfga1 c.5.1.1 (A:1-93) UDP-N 6.9 37 0.0027 21.8 -0.5 24 78-103 3-26 (93)
8 d2qdya1 d.149.1.1 (A:10-206) I 6.4 48 0.0035 25.8 -0.2 11 6-16 60-70 (197)
9 d1ppjw_ f.23.14.1 (W:) Subunit 6.3 1.9E+02 0.014 18.3 2.8 22 21-42 29-50 (62)
10 d3lyna_ a.19.1.1 (A:) Lysin {G 6.1 1.3E+02 0.0097 21.5 2.2 41 132-173 9-52 (122)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.50 E-value=27 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.3
Q ss_pred ccchhhhhcCchhhHHHHHHH
Q 037984 5 NCCCPRMLADPAFLYKLLVEQ 25 (201)
Q Consensus 5 ~~~r~RllADP~Fl~Kl~~E~ 25 (201)
+-+||.+++||.-...++.|-
T Consensus 36 p~lre~im~npe~fismllea 56 (57)
T d1x3zb1 36 PQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHhCHHHHHHHHHhh
Confidence 348999999999888887774
No 2
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.74 E-value=33 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.9
Q ss_pred hchhhhhhhhhHhhhhHHHHHHHhhc
Q 037984 79 KAAELCMVGLTAGAVQGSLSNYLAGK 104 (201)
Q Consensus 79 kg~~l~~VG~~ag~vg~~lsn~L~~k 104 (201)
++.|.+.+| ||-+|..++..|..+
T Consensus 5 ~~~KI~IiG--aG~vG~~~a~~l~~~ 28 (148)
T d1ldna1 5 GGARVVVIG--AGFVGASYVFALMNQ 28 (148)
T ss_dssp TSCEEEEEC--CSHHHHHHHHHHHHH
T ss_pred CCCeEEEEC--cCHHHHHHHHHHHhc
Confidence 567889998 599999999888763
No 3
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.68 E-value=1.5e+02 Score=18.38 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHHHhhhhHHHHHHHHhhcCC
Q 037984 21 LLVEQAPIIGCTVWWELENRKD 42 (201)
Q Consensus 21 l~~E~~i~i~~~~~~E~~~R~~ 42 (201)
.+.|.+.|.+..-+||--+||.
T Consensus 23 f~fe~~fD~~~d~~we~~NkGK 44 (55)
T d3cx5i1 23 FVFQTVFDTAITSWYENHNKGK 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhccCcc
Confidence 5679999999999999999886
No 4
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=7.65 E-value=37 Score=26.60 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=6.5
Q ss_pred cchhhhhcCch
Q 037984 6 CCCPRMLADPA 16 (201)
Q Consensus 6 ~~r~RllADP~ 16 (201)
+||+|||+|+.
T Consensus 65 ~FK~rLL~D~~ 75 (203)
T d1v29a_ 65 EFKQRLLEDPE 75 (203)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHHCHH
Confidence 36666666653
No 5
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=7.39 E-value=40 Score=26.45 Aligned_cols=11 Identities=36% Similarity=0.317 Sum_probs=7.0
Q ss_pred cchhhhhcCch
Q 037984 6 CCCPRMLADPA 16 (201)
Q Consensus 6 ~~r~RllADP~ 16 (201)
+||+||++||.
T Consensus 66 ~FK~rLL~D~~ 76 (203)
T d1ugpa_ 66 EFKKRLLADGT 76 (203)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 46677777763
No 6
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=7.36 E-value=45 Score=25.21 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.2
Q ss_pred HhhchhhhhhhhhHhhhhHHHHHHHhh
Q 037984 77 FYKAAELCMVGLTAGAVQGSLSNYLAG 103 (201)
Q Consensus 77 ~~kg~~l~~VG~~ag~vg~~lsn~L~~ 103 (201)
|+|+.+....|. +|.+|+.++..|..
T Consensus 5 ~~~~KkILVTG~-tGfIGs~lv~~Ll~ 30 (356)
T d1rkxa_ 5 FWQGKRVFVTGH-TGFKGGWLSLWLQT 30 (356)
T ss_dssp HHTTCEEEEETT-TSHHHHHHHHHHHH
T ss_pred hhCCCEEEEECC-CCHHHHHHHHHHHH
Confidence 478888888885 49999999999986
No 7
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=37 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=18.9
Q ss_pred hhchhhhhhhhhHhhhhHHHHHHHhh
Q 037984 78 YKAAELCMVGLTAGAVQGSLSNYLAG 103 (201)
Q Consensus 78 ~kg~~l~~VG~~ag~vg~~lsn~L~~ 103 (201)
+||.+...+|+ |.-|.++++.|..
T Consensus 3 ~~~K~v~ViGl--G~sG~s~a~~L~~ 26 (93)
T d2jfga1 3 YQGKNVVIIGL--GLTGLSCVDFFLA 26 (93)
T ss_dssp CTTCCEEEECC--SHHHHHHHHHHHH
T ss_pred cCCCEEEEEeE--CHHHHHHHHHHHH
Confidence 47778888887 5668888998887
No 8
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=6.41 E-value=48 Score=25.82 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=6.5
Q ss_pred cchhhhhcCch
Q 037984 6 CCCPRMLADPA 16 (201)
Q Consensus 6 ~~r~RllADP~ 16 (201)
+||.||++||.
T Consensus 60 ~FK~rLL~D~~ 70 (197)
T d2qdya1 60 EFRQLLLTDGT 70 (197)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 36666666653
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.28 E-value=1.9e+02 Score=18.30 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHhhhhHHHHHHHHhhcCC
Q 037984 21 LLVEQAPIIGCTVWWELENRKD 42 (201)
Q Consensus 21 l~~E~~i~i~~~~~~E~~~R~~ 42 (201)
.+.|.+.|.+..-+||--+||.
T Consensus 29 f~fE~~fD~~~d~iwe~~NkGK 50 (62)
T d1ppjw_ 29 LFFERAFDQGADAIYEHINEGK 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 5679999999999999998885
No 10
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens) [TaxId: 6456]}
Probab=6.12 E-value=1.3e+02 Score=21.51 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=24.4
Q ss_pred hHHHHHHhHHHHHhhhcchhH---HHHHHHHHhhhcccchhhHHH
Q 037984 132 MRYQLLCGFDRAVINHFDVIG---VALFLSTALRSLPLSLLRICL 173 (201)
Q Consensus 132 lRYQ~l~Gier~l~~~~~~~~---~~~~~s~a~R~~Nn~lG~~~~ 173 (201)
+-=|||+|+|+-+...+...+ .++ --=.+++.|...=-.+|
T Consensus 9 lK~qIIagfDrkl~~wl~~Hg~~ls~~-qkk~lyFvNRrymqthW 52 (122)
T d3lyna_ 9 MKIQIISGFDRQLTAWLRVHGRRLTNN-QKKTLFFVNRRYMQTHW 52 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHcCCccchh-hhhHHHHHhHHHHHHhH
Confidence 456999999998877653221 111 11245666666655555
Done!