BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037986
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 225/457 (49%), Gaps = 50/457 (10%)
Query: 4 EILSIELIKPSSPTPRHLKTHKLCFLDQYRNHAYFPMVFFYSVTHDTNLNLSNETDIAQI 63
E +S ELI PSSPTP+ LK +K+ LDQ + P + FY D+NL+ + +
Sbjct: 6 EKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTS----- 60
Query: 64 VSVRLQLLKQSLPETLSLFYPFAGKIKDNLSIDCSDEGIYFTEARFKSPLKEFFNQQNFS 123
Q LKQSL + L+ FYP AG+I N S+DC+D G+ F EAR ++ L + QN
Sbjct: 61 -----QHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAI--QNVV 113
Query: 124 CLTY--KFVP---FDAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFADGATLCSF 178
L +++P + ++E ++ ++++ F CGG I LSH AD +L +F
Sbjct: 114 ELEKLDQYLPSAAYPGGKIE--VNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATF 171
Query: 179 LKCWVATACKNNEQRISPNND-ASWLFPQNEAYPKEGTWLAMCPRFFGHGRFVTRRFVFD 237
L W AT C+ + + PN D A+ FP + P P V +RFVFD
Sbjct: 172 LNAWTAT-CRGETEIVLPNFDLAARHFPPVDNTP--------SPELVPDENVVMKRFVFD 222
Query: 238 XXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCVMAAFKAKHGSHKTTLLTHSVNLRN 297
+N +RV+ V A K V+ +AK+G+ ++ +VNLR+
Sbjct: 223 KEKIGALRAQASSASEEKN--FSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRS 280
Query: 298 KAKSILSEYSMGNIVWNANALCTNEEAELDLEGLVCKLREAMMKINGDFVKSLLGDEGFL 357
+ L Y+MGNI A + E + D L+ LR ++ K D LL +G
Sbjct: 281 RMNPPLPHYAMGNIATLLFA-AVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELL--KGMT 337
Query: 358 NLCQAIKDENGVCSKAKERINFSSWCNFGLYDIDFGWGKPMWVSVIGLDGKLPYFSSTII 417
L + + +E ++F+SWC G YD+DFGWGKP+ + + +
Sbjct: 338 CLYEL---------EPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKR-----NAAL 383
Query: 418 LLDTRFGDGIEAWVYLLEEDMNTLELDKELLALATLD 454
L+DTR GDG+EAW+ + E++M L + ELL+L D
Sbjct: 384 LMDTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSD 418
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 173/420 (41%), Gaps = 40/420 (9%)
Query: 1 MEPEILSIELIKPSSPTP-RHLKTHKLCFLDQYRNHAYFPMVFFYSVTHDTNLNLSNETD 59
M+ E+ +++P+ TP R+L + D + + P V+FY T +N
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNF------- 55
Query: 60 IAQIVSVRLQLLKQSLPETLSLFYPFAGKIKDN----LSIDCSDEGIYFTEARFKSPLKE 115
++LK +L L FYP AG++K + + I+C+ EG+ F EA + +
Sbjct: 56 ------FDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDD 109
Query: 116 FFNQQNFSCLTYKFVPFDAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFADGATL 175
F + L + +P A + IS + +QVT F CGG+ + + H ADG +
Sbjct: 110 FGDFAPTLELR-RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSG 166
Query: 176 CSFLKCWVATACKNNEQRISPNNDASWLFPQNEAYP-------KEGTWLAMCPRFFGHGR 228
F+ W A + + + P D + L ++ P + LA+ P+
Sbjct: 167 LHFINSWSDMA-RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDS 225
Query: 229 FV-TRRFVFDXXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCVMAAFKAKHGSHKTT 287
T +F + + E ++ +C A + + T
Sbjct: 226 VPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGT 283
Query: 288 LLTHSVNLRNKAKSILSEYSMGNIVWNANALCTNEEAELD-LEGLVCKLREAMMKINGDF 346
L + + R + + L GN+++ A + + E + K+ +A+ +++ D+
Sbjct: 284 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 343
Query: 347 VKSLLGDEGFLNLCQAIKD-ENGVCSKAKERINFSSWCNFGLYDIDFGWGKPMWVSVIGL 405
++S L +L L +K G + + +SW ++D DFGWG+P+++ G+
Sbjct: 344 LRSAL---DYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGI 400
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/420 (20%), Positives = 172/420 (40%), Gaps = 40/420 (9%)
Query: 1 MEPEILSIELIKPSSPTP-RHLKTHKLCFLDQYRNHAYFPMVFFYSVTHDTNLNLSNETD 59
M+ E+ +++P+ TP R+L + D + + P V+FY T +N
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNF------- 55
Query: 60 IAQIVSVRLQLLKQSLPETLSLFYPFAGKIKDN----LSIDCSDEGIYFTEARFKSPLKE 115
++LK +L L FYP AG++K + + I+C+ EG+ F EA + +
Sbjct: 56 ------FDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDD 109
Query: 116 FFNQQNFSCLTYKFVPFDAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFADGATL 175
F + L + +P A + IS + +QVT F GG+ + + H ADG +
Sbjct: 110 FGDFAPTLELR-RLIP--AVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSG 166
Query: 176 CSFLKCWVATACKNNEQRISPNNDASWLFPQNEAYP-------KEGTWLAMCPRFFGHGR 228
F+ W + + + + P D + L ++ P + LA+ P+
Sbjct: 167 LHFINSW-SDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDS 225
Query: 229 FV-TRRFVFDXXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCVMAAFKAKHGSHKTT 287
T +F + + E ++ +C A + + T
Sbjct: 226 VPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGT 283
Query: 288 LLTHSVNLRNKAKSILSEYSMGNIVWNANALCTNEEAELD-LEGLVCKLREAMMKINGDF 346
L + + R + + L GN+++ A + + E + K+ +A+ +++ D+
Sbjct: 284 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 343
Query: 347 VKSLLGDEGFLNLCQAIKD-ENGVCSKAKERINFSSWCNFGLYDIDFGWGKPMWVSVIGL 405
++S L +L L +K G + + +SW ++D DFGWG+P+++ G+
Sbjct: 344 LRSAL---DYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGI 400
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 172/420 (40%), Gaps = 40/420 (9%)
Query: 1 MEPEILSIELIKPSSPTP-RHLKTHKLCFLDQYRNHAYFPMVFFYSVTHDTNLNLSNETD 59
M+ E+ +++P+ TP R+L + D + + P V+FY T +N
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNF------- 52
Query: 60 IAQIVSVRLQLLKQSLPETLSLFYPFAGKIKDN----LSIDCSDEGIYFTEARFKSPLKE 115
++LK +L L FYP AG++K + + I+C+ EG+ F EA + +
Sbjct: 53 ------FDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDD 106
Query: 116 FFNQQNFSCLTYKFVPFDAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFADGATL 175
F + L + +P A + IS + +QVT F CGG+ + + H ADG +
Sbjct: 107 FGDFAPTLELR-RLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSG 163
Query: 176 CSFLKCWVATACKNNEQRISPNNDASWLFPQNEAYP-------KEGTWLAMCPRFFGHGR 228
F+ W A + + + P D + L ++ P + L + P+
Sbjct: 164 LHFINSWSDMA-RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDS 222
Query: 229 FV-TRRFVFDXXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCVMAAFKAKHGSHKTT 287
T +F + + E ++ +C A + + T
Sbjct: 223 VPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLE--VDQGT 280
Query: 288 LLTHSVNLRNKAKSILSEYSMGNIVWNANALCTNEEAELD-LEGLVCKLREAMMKINGDF 346
L + + R + + L GN+++ A + + E + K+ +A+ +++ D+
Sbjct: 281 KLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDY 340
Query: 347 VKSLLGDEGFLNLCQAIKD-ENGVCSKAKERINFSSWCNFGLYDIDFGWGKPMWVSVIGL 405
++S L +L L +K G + + +SW ++D DFGWG+P+++ G+
Sbjct: 341 LRSAL---DYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGI 397
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 129/368 (35%), Gaps = 33/368 (8%)
Query: 61 AQIVSVRLQLLKQSLPETLSLFYPFAGKI-----KDNLSIDCSDEG--IYFTEARFKSPL 113
+Q + +K SL TL FYPF GK+ C EG + T A L
Sbjct: 55 SQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL 114
Query: 114 KEFFNQQNFSCLT-YKFVPF--DAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFA 170
E +C Y VP ++ L I + + +QVT F GI I H
Sbjct: 115 NELTGNHPRNCDKFYDLVPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLG 173
Query: 171 DGATLCSFLKCWVATACKNNEQRISPNNDASWLFPQNEAYPK-EGTWLAMCPRFFGHGRF 229
D +T FLK W + A N N L+ + YP + +L + +
Sbjct: 174 DASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDY 233
Query: 230 VTRRFV-----FDXXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCVMA-AFKAKHGS 283
VT+ RV PT +E VS+ C + AK +
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPT-LEYVSSFTVACAYIWSCIAKSRN 292
Query: 284 HKTTLLTHSVNLRNKAKSILSEYSMGNIVWNANALCTNEEAELDLEGLVCKLR---EAMM 340
K L ++ R + K + GN V A+ + EG + + E +
Sbjct: 293 DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKT-NLLIGKEGFITAAKLIGENLH 351
Query: 341 KINGDFVKSLLGD--EGFLNLCQAIKDENGVCSKAKERINFSSWCNFGLYDIDFGWGKPM 398
K D+ +L D E F +L ++ F YD+DFGWGKP
Sbjct: 352 KTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRF--------YDMDFGWGKPK 403
Query: 399 WVSVIGLD 406
+ + +D
Sbjct: 404 KLETVSID 411
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 129/368 (35%), Gaps = 33/368 (8%)
Query: 61 AQIVSVRLQLLKQSLPETLSLFYPFAGKI-----KDNLSIDCSDEG--IYFTEARFKSPL 113
+Q + +K SL TL FYPF GK+ C EG + T A L
Sbjct: 55 SQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL 114
Query: 114 KEFFNQQNFSCLT-YKFVPF--DAKELEGSISGLHVAKIQVTSFACGGIVICACLSHLFA 170
E +C Y VP ++ L I + + +QVT F GI I H
Sbjct: 115 NELTGNHPRNCDKFYDLVPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLG 173
Query: 171 DGATLCSFLKCWVATACKNNEQRISPNNDASWLFPQNEAYPK-EGTWLAMCPRFFGHGRF 229
D +T FLK W + A N N L+ + YP + +L + +
Sbjct: 174 DASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDY 233
Query: 230 VTRRFV-----FDXXXXXXXXXXXXXXXRVQNPTPTRVEAVSALFSKCV-MAAFKAKHGS 283
VT+ RV PT +E VS+ C + + AK +
Sbjct: 234 VTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPT-LEYVSSFTVACAYIWSCIAKSRN 292
Query: 284 HKTTLLTHSVNLRNKAKSILSEYSMGNIVWNANALCTNEEAELDLEGLVCKLR---EAMM 340
K L ++ R + K + GN V A+ + EG + + E +
Sbjct: 293 DKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKT-NLLIGKEGFITAAKLIGENLH 351
Query: 341 KINGDFVKSLLGD--EGFLNLCQAIKDENGVCSKAKERINFSSWCNFGLYDIDFGWGKPM 398
K D+ +L D E F +L ++ F YD DFGWGKP
Sbjct: 352 KTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRF--------YDXDFGWGKPK 403
Query: 399 WVSVIGLD 406
+ + +D
Sbjct: 404 KLETVSID 411
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 64 VSVRLQLLKQSLPETLSLFYPFAGKIKDNLSIDCSDEGIYFTEARF--KSPLKEFFNQQN 121
V + LK SL TL + P AG + C + + E R+ + + F++ +
Sbjct: 53 VQTIIPTLKDSLSLTLKYYLPLAGNVA------CPQDWSGYPELRYVTGNSVSVIFSESD 106
Query: 122 --FSCLT----------YKFVPFDAKELEG-SISGLHVAKIQVTSFACGGIVICACLSHL 168
F+ L Y FVP A+ + + V IQVT F GI I H+
Sbjct: 107 XDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHV 166
Query: 169 FADGATLCSFLKCW 182
DGAT+ F++ W
Sbjct: 167 AGDGATIVKFVRAW 180
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 28/97 (28%)
Query: 328 LEGLVCKLREAMMKINGDFVKSLLGDEGFLNLCQAI--------KDENGVCS-------- 371
L G V + R+ L G EGF + I KDE + S
Sbjct: 323 LVGYVARTRQV----------DLAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYD 372
Query: 372 --KAKERINFSSWCNFGLYDIDFGWGKPMWVSVIGLD 406
AK ++ + LY DFGWG+P + + +D
Sbjct: 373 KVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSID 409
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 377 INFSSWCNFGLYDIDF--GWGKPMWVSVIGLDGKLPYFS--STIILLDTRFGDG-IEAWV 431
+ SSW GL+D DF G GKP V + P F +++ + DG A +
Sbjct: 375 VMLSSWAKVGLWDYDFGLGLGKPETV-------RRPIFEPVESLMYFMPKKPDGEFCAAL 427
Query: 432 YLLEEDMNTLELDKE 446
L +EDM+ L+ DKE
Sbjct: 428 SLRDEDMDRLKADKE 442
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 377 INFSSWCNFGLYDIDF--GWGKPMWVSVIGLDGKLPYFS--STIILLDTRFGDG-IEAWV 431
+ SSW GL+D DF G GKP V + P F ++ + DG A +
Sbjct: 376 VXLSSWAKVGLWDYDFGLGLGKPETV-------RRPIFEPVESLXYFXPKKPDGEFCAAL 428
Query: 432 YLLEEDMNTLELDKE 446
L +ED + L+ DKE
Sbjct: 429 SLRDEDXDRLKADKE 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,652,889
Number of Sequences: 62578
Number of extensions: 556988
Number of successful extensions: 968
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 18
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)