BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037988
         (468 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NQY|A Chain A, Crystal Structure Of The Autoprocessed Complex Of
           Vibriolysin Mcp-02 With A Single Point Mutation E346a
 pdb|3NQZ|A Chain A, Crystal Structure Of The Autoprocessed Vibriolysin Mcp-02
           With E369a Mutation
          Length = 180

 Score = 31.6 bits (70), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 63  YSEDEQTINKINEHNISNYYTTNPNEVAGVAVGQEFEIVQHF 104
           Y   + TIN + + N ++  + +PN++ G++VG E  +++ F
Sbjct: 5   YLNQQPTINNMVQSNSASLLSVSPNQLIGLSVGNELVVLKEF 46


>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
 pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
          Length = 631

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 212 NGNYTDSYQRLRDYTQILRHRNLDVLVKMKFVSALKNAF 250
           NGN    Y++L+D  QILR+ N  V V +     L  A 
Sbjct: 157 NGNLIVEYEQLKDLPQILRNENFSVTVGVSDYLGLNKAL 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,009,473
Number of Sequences: 62578
Number of extensions: 578527
Number of successful extensions: 1588
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 4
length of query: 468
length of database: 14,973,337
effective HSP length: 102
effective length of query: 366
effective length of database: 8,590,381
effective search space: 3144079446
effective search space used: 3144079446
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)