BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037988
         (468 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6UDH3|OBP_PSHV1 Replication origin-binding protein OS=Psittacid herpesvirus 1
           (isolate Amazon parrot/-/97-0001/1997) GN=UL9 PE=3 SV=1
          Length = 880

 Score = 34.3 bits (77), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 373 EWARYDIKVDHVTNNLTESWNNWLNEYRDKPVLTLTEFIKKNVMKSLYKRYSDVRKWIRK 432
           EW   D+  +H ++  +E ++ W+N Y D+P+++L     + V          ++  IR 
Sbjct: 637 EWYVVDLAAEHASHGSSE-FDKWMNYYLDEPLVSLKRGRPEEVQIP-------IQPGIRG 688

Query: 433 LPPIVRRKLNVSRQEG 448
              ++R  +NV+RQ G
Sbjct: 689 RTALLRACVNVARQIG 704


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,606,235
Number of Sequences: 539616
Number of extensions: 7568943
Number of successful extensions: 22791
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 22753
Number of HSP's gapped (non-prelim): 63
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)