BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037989
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 13 PQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV---MTSITTMKEINDQILS 69
P LVG FV QY+ L+Q P+ LHRFY +S G D ++ KEI+ +++S
Sbjct: 9 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 68
Query: 70 LDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ---ENGFFVL 125
++ N T+I VDA A+ GV+V V G +S RRF Q+F LAP+ N F+V
Sbjct: 69 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVH 128
Query: 126 NDIFRFVDD 134
NDIFR+ D+
Sbjct: 129 NDIFRYQDE 137
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFY-QDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQN 74
VG FV QY+ L++ P HLHRFY +SS++ G + +EI+++I L++ +
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYI-----HGESKLVVGQREIHNRIQQLNFND 60
Query: 75 YQTEILTVDAQASYCKGVLVLVTGYMSGKTG-KRRFSQSFFLAPQE-NGFFVLNDIFRF 131
+I VDAQA+ GV+V VTG +S RRF+Q+F LA Q ++V NDIFR+
Sbjct: 61 CHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 119
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D + +F + Y+ L Y++ S L+ + + K+I ++++SL
Sbjct: 3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFE-----TSQLQGAKDIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQ-ASYCKGVLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q Q I T+DAQ AS VLV++TG + + +RFSQ F L P N ++V ND
Sbjct: 58 PFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFND 117
Query: 128 IFR 130
IFR
Sbjct: 118 IFR 120
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 6 ESSAKVDPQL--VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEI 63
+ S ++PQ +G FV+ Y++ L Y S L+ T I
Sbjct: 2 DQSINLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED-----TQFQGQANI 56
Query: 64 NDQILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQEN-G 121
++ SL++Q Q EI VD Q S G +V VTG + G+ +FSQ F L P N G
Sbjct: 57 VNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGG 116
Query: 122 FFVLNDIFR 130
F + ND+FR
Sbjct: 117 FMIFNDLFR 125
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK- 406
+FVA + D T +++ F +GPIK + +P ++F+E+E M +A K
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 407 ASPITFGDRKVYVEQKKGK 425
A R+V V+ ++G+
Sbjct: 164 ADGKKIDGRRVLVDVERGR 182
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK- 406
+FVA + D T +++ F +GPIK + +P ++F+E+E M +A K
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 407 ASPITFGDRKVYVEQKKGK 425
A R+V V+ ++G+
Sbjct: 164 ADGKKIDGRRVLVDVERGR 182
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 91 NSVMLGGRNIKV 102
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 99 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 153
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 154 SATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSM 401
++ K+ ++V NLP +T DQ+ ++F K+G I I RP +FV +
Sbjct: 9 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 68
Query: 402 QNALKA 407
Q A+ A
Sbjct: 69 QEAISA 74
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 83 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 137
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 138 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 168
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + F+FVE+E + Q AL +
Sbjct: 15 VYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQX 74
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 75 NSVXLGGRNIKV 86
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSM 401
++ K+ ++V NLP +T DQ+ ++F K+G I I RP +FV +
Sbjct: 96 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 155
Query: 402 QNALKA 407
Q A+ A
Sbjct: 156 QEAISA 161
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 339 IDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCF--SFVEFE 396
++D A N + V LP D T ++ ++F GPI N RI + F +FV+F
Sbjct: 7 MNDPRASNTNLIVNYLPQDXTDRELYALFRAIGPI--NTCRIXRDYKTGYSFGYAFVDFT 64
Query: 397 SISSMQNALKA-SPITFGDRKVYV 419
S Q A+K + IT ++++ V
Sbjct: 65 SEXDSQRAIKVLNGITVRNKRLKV 88
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ +LP + T + S F+ FG + + + I CF FV F++ S Q A+KA
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102
Query: 408 SPITFGDRKVYVEQKK 423
+ G +++ V+ KK
Sbjct: 103 NGFQVGTKRLKVQLKK 118
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 16 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 75
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 76 NSVMLGGRNIKV 87
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 84 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 138
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 139 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 169
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 336 RNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEF 395
R NI N ++++ NLP +TA+++ +F K+GPI+ IR+ N ++V +
Sbjct: 2 RANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--IRV-GNTPETRGTAYVVY 58
Query: 396 ESISSMQNA 404
E I +NA
Sbjct: 59 EDIFDAKNA 67
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSM 401
++ K+ ++V NLP +T DQ+ ++F K+G I I RP +FV +
Sbjct: 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144
Query: 402 QNALKA 407
Q A+ A
Sbjct: 145 QEAISA 150
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQN 403
A N + V LP D+T ++ ++F GPI I ++FV+F S Q
Sbjct: 1 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQR 60
Query: 404 ALKA 407
A+K
Sbjct: 61 AIKV 64
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 334 ALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFV 393
A R NI N ++++ NLP +TA+++ +F K+GPI+ IR+ N ++V
Sbjct: 6 AKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--IRV-GNTPETRGTAYV 62
Query: 394 EFESISSMQNA 404
+E I +NA
Sbjct: 63 VYEDIFDAKNA 73
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QASITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ LP + DQ+K + FGP+KA + + ++F E+ I+ A+
Sbjct: 99 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 158
Query: 408 SPITFGDRKVYVEQ 421
+ + GD+K+ V++
Sbjct: 159 NGMQLGDKKLLVQR 172
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ LP + DQ+K + FGP+KA + + ++F E+ I+ A+
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156
Query: 408 SPITFGDRKVYVEQ 421
+ + GD+K+ V++
Sbjct: 157 NGMQLGDKKLLVQR 170
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ LP + DQ+K + FGP+KA + + ++F E+ I+ A+
Sbjct: 117 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 176
Query: 408 SPITFGDRKVYVEQ 421
+ + GD+K+ V++
Sbjct: 177 NGMQLGDKKLLVQR 190
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKANENPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
I+V NLP D+ I+ VF K+G I+ I ++ + P F+FVEFE ++A+
Sbjct: 25 IYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRRGGPP-FAFVEFEDPRDAEDAV 78
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 348 VIFVANLPMDVTADQIKSVF----VKFGPIKANGIR-IRTNQLRPNCFSFVEFESISSMQ 402
V+ V LP +AD+++ F ++ G A GIR I T + RP+ +FVE ES ++
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNG---AQGIRFIYTREGRPSGEAFVELESEDEVK 65
Query: 403 NALKASPITFGDRKVYV 419
ALK T G R V V
Sbjct: 66 LALKKDRETMGHRYVEV 82
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N +FV P+DV ++ +F FGP+K I N F+FVEFE S A+
Sbjct: 4 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAI 55
Query: 406 K 406
+
Sbjct: 56 E 56
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ LP + DQ+K + FGP+KA + + ++F E+ I+ A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 408 SPITFGDRKVYVEQ 421
+ + GD+K+ V++
Sbjct: 64 NGMQLGDKKLLVQR 77
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 334 ALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFV 393
A R NI N ++ + NLP +TA+++ +F K+GPI+ IR+ N ++V
Sbjct: 6 AKRANIRLPPEVNRILMIRNLPYKITAEEMYDIFGKYGPIRQ--IRV-GNTPETRGTAYV 62
Query: 394 EFESISSMQNA 404
+E I +NA
Sbjct: 63 VYEDIFDAKNA 73
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N +FV P+DV ++ +F FGP+K I N F+FVEFE S A+
Sbjct: 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAI 82
Query: 406 K 406
+
Sbjct: 83 E 83
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFE----SISSMQN 403
+FV N+P + T +Q+K +F + GP+ + + +P + F E++ ++S+M+N
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF++ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 9 IGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 63
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 64 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 120
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF+ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQEFLLKNINDAWVCTNDMFRL 121
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N ++++ NLP +TA+++ +F K+GPI+ IR+ N ++V +E I +NA+
Sbjct: 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQ--IRV-GNTPETRGTAYVVYEDIFDAKNAV 64
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPI-KANGIRIRTNQLRPNCFSFVEFESISSM 401
A+ +FV L D ++ VF K+G I + ++ R Q R F FV FE+I
Sbjct: 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-RSRGFGFVTFENIDDA 67
Query: 402 QNALKA 407
++A+ A
Sbjct: 68 KDAMMA 73
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISS 400
D+ K IFV + DV + + F ++G I + + + + F FV ++S +
Sbjct: 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141
Query: 401 MQNALKASPITFGDRKVYVEQ 421
+ + I F DRK+ +++
Sbjct: 142 VDRVCQNKFIDFKDRKIEIKR 162
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+F+ L D T D ++ F K+G + I R F F+ FE SS+ +K
Sbjct: 6 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 65
Query: 409 PITFG 413
I G
Sbjct: 66 HILDG 70
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
IFV +P + +++ F KFG + + + RP F F+ FE S+ A+
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
+ V +P V Q++ +F ++GPI++ I + + FV+F+S SS Q A+
Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPI-KANGIRIRTNQLRPNCFSFVEFESISSMQNALK- 406
+F+ L + +K+VF K GPI + I+ RT++ R F+F+ FE+ + +NA K
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR--GFAFITFENPADAKNAAKD 67
Query: 407 ASPITFGDRKVYVEQKK 423
+ + + + VEQ K
Sbjct: 68 MNGKSLHGKAIKVEQAK 84
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF+ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ +V G + F Q F L + + ND FR
Sbjct: 65 QHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDEFRL 121
>pdb|2DNG|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 4h
Length = 103
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 350 FVANLPMDVTADQIKSVFVKFGPIKANGIRIR-TNQLRPNCFSFVEFESISSMQNALKAS 408
+V NLP + I ++F +R + T++ + C+ VEF+ + S++ AL
Sbjct: 19 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCY--VEFDEVDSLKEALTYD 76
Query: 409 PITFGDRKVYVEQKKGK 425
GDR + V+ +G+
Sbjct: 77 GALLGDRSLRVDIAEGR 93
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+G+SF+ Y++ L Y D+S L+ G I +++ SL +Q
Sbjct: 10 IGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEG-----QQFQGKAAIVEKLSSLPFQKI 64
Query: 76 QTEILTVDAQASYCKGVLVLVTGYMSGKTGK-RRFSQSFFLAPQENGFFVLNDIFRF 131
Q I D Q + ++ V G + F Q F L + + ND+FR
Sbjct: 65 QHSITAQDHQPTPDSCIISEVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
I+V NL T++Q+K +F +FG + + +P F FVE + S + K
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLD 63
Query: 409 PITFGDRKVYVEQ 421
F R + V +
Sbjct: 64 NTDFMGRTIRVTE 76
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 337 NNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFE 396
NN+ +A ++V +L ++T D ++ +F FG I++ + + + R + F+ F
Sbjct: 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 76
Query: 397 SISSMQNALK 406
+ AL+
Sbjct: 77 DSECAKKALE 86
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ--LRPNCFSFVEFESISSMQNALK 406
+FV LP D+ D+I + F +FGP+ + ++ P ++F+ F+ SS+Q +
Sbjct: 11 VFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALID 70
Query: 407 A 407
A
Sbjct: 71 A 71
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES 397
+FV NLP D+T ++++ +F K+G KA + I ++ F F+ E+
Sbjct: 25 LFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDK----GFGFIRLET 67
>pdb|1WI8|A Chain A, Solution Structure Of The Rna Binding Domain Of Eukaryotic
Initiation Factor 4b
Length = 104
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 350 FVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASP 409
F+ NLP DVT + IK F R +N R F + EFE + S+ +AL +
Sbjct: 19 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 78
Query: 410 ITFGDRKVYVE 420
+ G++++ V+
Sbjct: 79 ESLGNKRIRVD 89
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 350 FVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
FV L D + +K F KFG + I+ N R F F+ F+ +S++ L
Sbjct: 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVL 70
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 32.3 bits (72), Expect = 0.47, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N + V L + T ++ VF K+GPI I R F+FV FE++ + A
Sbjct: 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 105
Query: 406 -KASPITFGDRKVYVE 420
+A+ + R++ V+
Sbjct: 106 ERANGMELDGRRIRVD 121
>pdb|2J76|E Chain E, Solution Structure And Rna Interactions Of The Rna
Recognition Motif From Eukaryotic Translation Initiation
Factor 4b
Length = 100
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 350 FVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASP 409
F+ NLP DVT + IK F R +N R F + EFE + S+ +AL +
Sbjct: 23 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 82
Query: 410 ITFGDRKVYVE 420
+ G+R++ V+
Sbjct: 83 ESLGNRRIRVD 93
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 10 KVDPQLVGNS--FVEQYFKALHQYPEHLHRFYQDSS---FLSRP--GPDGVMTSITTMKE 62
K D +L S F++ Y+ + + E + Y S + P G D + + +
Sbjct: 28 KEDEELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPS 87
Query: 63 INDQILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMS-GKTGKRRFSQSFFLAPQENG 121
I SLD Q E +T D G+L+ V G ++ KR F+Q+ L ++
Sbjct: 88 TQHDIQSLDAQRL-PEGVTGDMSG----GMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGK 142
Query: 122 FFVLNDIFRFVD 133
+ V +D FR+VD
Sbjct: 143 YKVKSDRFRYVD 154
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N + V L + T ++ VF K+GPI I R F+FV FE++ + A
Sbjct: 12 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 71
Query: 406 -KASPITFGDRKVYVE 420
+A+ + R++ V+
Sbjct: 72 ERANGMELDGRRIRVD 87
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 31.6 bits (70), Expect = 0.80, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N + V L + T ++ VF K+GPI I R F+FV FE++ + A
Sbjct: 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74
Query: 406 -KASPITFGDRKVYVE 420
+A+ + R++ V+
Sbjct: 75 ERANGMELDGRRIRVD 90
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES 397
+FV NLP D+T ++++ +F K+G KA + I ++ F F+ E+
Sbjct: 18 LFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDK----GFGFIRLET 60
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
N + V L + T ++ VF K+GPI I R F+FV FE++ + A
Sbjct: 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 74
Query: 406 -KASPITFGDRKVYV 419
+A+ + R++ V
Sbjct: 75 ERANGMELDGRRIRV 89
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
+F+ +LP + + +F+ FG + + + I CF FV +++ S Q A+++
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87
Query: 408 SPITFGDRKVYVEQKKGK 425
+ G +++ V+ K+ K
Sbjct: 88 NGFQIGMKRLKVQLKRSK 105
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES 397
IFV L ++ T + +K F +FG + + R F FV FES
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+FV +L ++T + IKS F FG I + + + FV F + +NA+
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 74
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
+F+ NLP + T +I+S+F ++G + + + ++ + FV E ++ ++A++
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKV------LECDIIKN--YGFVHIEDKTAAEDAIR 60
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
V+++ ++P D T +QI + GP+ + R ++F+EF + S +A++
Sbjct: 6 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 64
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
V+++ ++P D T +QI + GP+ + R ++F+EF + S +A++
Sbjct: 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
V+++ ++P D T +QI + GP+ + R ++F+EF + S +A++
Sbjct: 5 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 63
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 349 IFVANLPMDVTADQIKSVFVKFG 371
+FV NLP D+T + K +F ++G
Sbjct: 25 LFVGNLPTDITEEDFKRLFERYG 47
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
I+V N+ TA+++++ F G + I P F+++EF S++ +L
Sbjct: 8 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 67
Query: 409 PITFGDRKVYVEQKK 423
F R++ V K+
Sbjct: 68 ESLFRGRQIKVIPKR 82
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
I+V N+ TA+++++ F G + I P F+++EF S++ +L
Sbjct: 9 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 68
Query: 409 PITFGDRKVYVEQKK 423
F R++ V K+
Sbjct: 69 ESLFRGRQIKVIPKR 83
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQN 403
A N + V LP D+T ++ ++F GPI I ++FV+F S Q
Sbjct: 1 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQR 60
Query: 404 ALKA-SPITFGDRKVYV 419
A+K + IT ++++ V
Sbjct: 61 AIKVLNGITVRNKRLKV 77
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 349 IFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
+F+ NLP+ +V+ + + +F +G I I+ N F F++F++ S+++A++
Sbjct: 13 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEC 64
Query: 408 S--PITFGDRKV 417
+ FG + +
Sbjct: 65 ESQEMNFGKKLI 76
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 349 IFVANLPMDVTADQIKS----VFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNA 404
+FV NL + +A ++K+ VF K + +RI + F +V+FES ++ A
Sbjct: 10 LFVGNLNFNKSAPELKTGISDVFAK-NDLAVVDVRIGMTR----KFGYVDFESAEDLEKA 64
Query: 405 LKASPITFGDRKVYVEQKKGK 425
L+ + + ++ +E+ KGK
Sbjct: 65 LELTGLKVFGNEIKLEKPKGK 85
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL-RPNCFSFVEFESISSMQNAL 405
+F++ LP T ++++ + G +K +R+ TN+ +P ++VE+E+ S A+
Sbjct: 20 LFISGLPFSCTKEELEEICKAHGTVK--DLRLVTNRAGKPKGLAYVEYENESQASQAV 75
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 85 QASYCKGVLVLVTGYMSGKTGKRRFSQSFFLAPQE-------NGFFVLNDIFRFVDDD 135
Q +Y KGV + T YM G G R S SF +E G + + RF DDD
Sbjct: 66 QHTYRKGVKIDKTDYMVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKS--RFTDDD 121
>pdb|2XNQ|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 349 IFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-- 405
+F+ NLP+ +V+ + + +F +G I I+ N F F++F++ S+++A+
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEX 76
Query: 406 KASPITFGDRKV 417
++ + FG + +
Sbjct: 77 ESQEMNFGKKLI 88
>pdb|2E5G|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 21
Length = 94
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+FV+ P V + Q+ F+ FGP+ + + + ++ F+ VE + + + L S
Sbjct: 11 VFVSGFPRGVDSAQLSEYFLAFGPVAS--VVMDKDK---GVFAIVEMGDVGAREAVLSQS 65
Query: 409 PITFGDRKVYVEQKKGK 425
+ G ++ V ++ K
Sbjct: 66 QHSLGGHRLRVRPREQK 82
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+F+ L D T +K F KFG + +++ R F FV F+ S+ +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM--- 58
Query: 409 PITFGDRKVYVEQKKGKLN 427
+QK+ KLN
Sbjct: 59 -----------DQKEHKLN 66
>pdb|2L41|A Chain A, Nab3 Rrm - Ucuu Complex
Length = 77
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 349 IFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
+F+ NLP+ +V+ + + +F +G I I+ N F F++F++ S+++A++
Sbjct: 5 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEC 56
Query: 408 S--PITFGDRKV 417
+ FG + +
Sbjct: 57 ESQEMNFGKKLI 68
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
++V+NLP +T + + +F K+G + I + + +F+ F S QN +A
Sbjct: 19 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77
>pdb|2XNR|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 349 IFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
+F+ NLP+ +V+ + + +F +G I I+ N F F++F++ S+++A++
Sbjct: 25 LFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEC 76
Query: 408 SP--ITFGDRKV 417
+ FG + +
Sbjct: 77 ESQEMNFGKKLI 88
>pdb|3ELX|A Chain A, Crystal Structure Of Apo Zebrafish Ileal Bile Acid-Binding
Protein
pdb|3ELZ|A Chain A, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3ELZ|B Chain B, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3ELZ|C Chain C, Crystal Structure Of Zebrafish Ileal Bile Acid-Bindin
Protein Complexed With Cholic Acid (Crystal Form A).
pdb|3EM0|A Chain A, Crystal Structure Of Zebrafish Ileal Bile Acid-bindin
Protein Complexed With Cholic Acid (crystal Form B).
pdb|3EM0|B Chain B, Crystal Structure Of Zebrafish Ileal Bile Acid-bindin
Protein Complexed With Cholic Acid (crystal Form B)
Length = 138
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 188 LPDEVITKENDKKISETLPQNGHD-------QDNHSVSNQ 220
+PD+VI K D K+ + QNG D +NH V+N+
Sbjct: 27 IPDDVIAKGRDFKLVTEIVQNGDDFTWTQYYPNNHVVTNK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,749,130
Number of Sequences: 62578
Number of extensions: 442015
Number of successful extensions: 815
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 89
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)