BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037989
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 194/458 (42%), Gaps = 102/458 (22%)
Query: 5 AESSAKVDPQL----VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSIT-T 59
AE++ ++P L +G FV++Y+ L++ P LH FY S L G +G S+
Sbjct: 3 AENATLLEPVLGKDEIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIH-GDEGESISLCHG 61
Query: 60 MKEINDQILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTGK--RRFSQSFFLAP 117
+EI+++IL LD+QN + I VD+ AS G+++ V G MS K GK R+F+Q+FFLA
Sbjct: 62 QQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNK-GKLSRKFAQTFFLAE 120
Query: 118 QENGFFVLNDIFRFVDDDLSVGMVMPINDVDKTAAPVTTT-------------SAPESEP 164
Q NG+FVLNDIFRF+ +D+ P + V+K V + SA E
Sbjct: 121 QPNGYFVLNDIFRFLREDVEEEEESP-DAVEKEKKDVASEPYVNGVQSQEHLPSAKEEGH 179
Query: 165 VQVANQSVTNHTTTTI-------METAKTTLPDEVITKENDKKISETLPQNGHDQDNHSV 217
Q + N T + + A +P+E + + + + + Q Q+N
Sbjct: 180 YQDPAATENNFATAALISNETDSLNQATLAVPEEPVIQVTEASVPSFVSQ----QENQLQ 235
Query: 218 SNQTSTTTSSAEAISTTTTNNVNRPAETSSHDHLHKKANDHLIPEKKSGVANHDHPPVVS 277
++ + +A+AI + AN P+ + + +HP V S
Sbjct: 236 DEALTSNSKNADAIGAS-------------------DANVATAPKSWADLIARNHPDVKS 276
Query: 278 EIKTPRTPDSSSRKSFASIVHALKDNSSPFQNKVPPPNLKKGSNT--TQSSADPF--SNN 333
+ T ++ + KG N TQ P+ SN
Sbjct: 277 QASVSSTASTTGQTV-------------------------KGVNADQTQQPTAPYTQSNE 311
Query: 334 ALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFV 393
L ++ FV N+P + + +KS FGP+KA R ++V
Sbjct: 312 LLETSV----------FVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGT------AYV 355
Query: 394 EFESISSMQNALKASPITFGDRKVYVEQKK----GKLN 427
+F + +Q AL + + + +E+++ GK N
Sbjct: 356 DFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFN 393
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDG---VMTSITTMKEINDQ 66
K P LVG FV QY+ L+Q P+ LHRFY +S + G D ++ KEI+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ---ENGF 122
++S ++ N T+I VDA A+ GV+V V G +S RRF Q+F LAP+ N F
Sbjct: 65 VMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKF 124
Query: 123 FVLNDIFRFVDD 134
+V NDIFR+ D+
Sbjct: 125 YVHNDIFRYQDE 136
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+F+ NLP +V ++K F FG + +RI + PN F FV F+ +Q L
Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVE--LRINSGGKLPN-FGFVVFDDSEPVQKVLSNR 396
Query: 409 PITF-GDRKVYVEQKK 423
PI F G ++ VE+KK
Sbjct: 397 PIMFRGAVRLNVEEKK 412
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDG---VMTSITTMKEINDQ 66
K P LVG FV QY+ L+Q P+ LHRFY +S G D ++ KEI+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ---ENGF 122
++S ++ N T+I VDA A+ GV+V V G +S RRF Q+F LAP+ N F
Sbjct: 65 VMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKF 124
Query: 123 FVLNDIFRFVDD 134
+V NDIFR+ D+
Sbjct: 125 YVHNDIFRYQDE 136
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDG---VMTSITTMKEINDQ 66
K P LVG FV QY+ L+Q P+ LHRFY +S G D ++ KEI+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ---ENGF 122
++S ++ N T+I VDA A+ GV+V V G +S RRF Q+F LAP+ N F
Sbjct: 65 VMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKF 124
Query: 123 FVLNDIFRFVDD 134
+V NDIFR+ D+
Sbjct: 125 YVHNDIFRYQDE 136
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+F+ NLP +V ++K F +G + +RI + PN F FV F+ +Q L
Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVE--LRINSGGKLPN-FGFVVFDDSEPVQKVLSNR 398
Query: 409 PITF-GDRKVYVEQKK 423
PI F G+ ++ VE+KK
Sbjct: 399 PIMFRGEVRLNVEEKK 414
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDG---VMTSITTMKEINDQ 66
K P LVG FV QY+ L+Q P+ LHRFY +S G D ++ KEI+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ---ENGF 122
++S ++ N T+I VDA A+ GV+V V G +S RRF Q+F LAP+ N F
Sbjct: 65 VMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKF 124
Query: 123 FVLNDIFRFVDD 134
+V NDIFR+ D+
Sbjct: 125 YVHNDIFRYQDE 136
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
+F+ NLP +V ++K F +G + +RI + PN F FV F+ +Q L
Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVE--LRINSGGKLPN-FGFVVFDDSEPVQKVLSNR 398
Query: 409 PITF-GDRKVYVEQKK 423
PI F G+ ++ VE+KK
Sbjct: 399 PIMFRGEVRLNVEEKK 414
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV---MTSITTMKEINDQ 66
K P LVG FV QY+ L++ PE+LHRFY +S G D ++ +I+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTG-KRRFSQSFFLAPQ---ENGF 122
+LSL++ T+I VDA A+ GV+V V G +S +R+F Q+F LAP+ N F
Sbjct: 65 VLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKF 124
Query: 123 FVLNDIFRFVDD 134
+V ND+FR+ D+
Sbjct: 125 YVHNDMFRYEDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV---MTSITTMKEINDQ 66
K P LVG FV QY+ L++ PE+LHRFY +S G D ++ +I+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTG-KRRFSQSFFLAPQ---ENGF 122
+LSL++ T+I VDA A+ GV+V V G +S +R+F Q+F LAP+ N F
Sbjct: 65 VLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKF 124
Query: 123 FVLNDIFRFVDD 134
+V ND+FR+ D+
Sbjct: 125 YVHNDMFRYEDE 136
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV---MTSITTMKEINDQ 66
K P LVG FV QY+ L++ PE+LHRFY +S G D ++ +I+ +
Sbjct: 5 KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHK 64
Query: 67 ILSLDYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTG-KRRFSQSFFLAPQ---ENGF 122
+LSL++ T+I VDA A+ GV+V V G +S +R+F Q+F LAP+ N F
Sbjct: 65 VLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKF 124
Query: 123 FVLNDIFRFVDD 134
+V ND+FR+ D+
Sbjct: 125 YVHNDMFRYEDE 136
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 9 AKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQIL 68
+++DP V +FVE Y+ L YQ++S L+ G I ++ I ++
Sbjct: 2 SQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEG-----QKIQGVQSIVAKLT 56
Query: 69 SLDYQNYQTEILTVDAQASY-CKGVLVLVTG--YMSGKTGKRRFSQSFFLAPQENG-FFV 124
SL +Q + I TVD Q S G+LV V+G ++G+ +FSQ F L P G F+V
Sbjct: 57 SLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYV 116
Query: 125 LNDIFR 130
NDIFR
Sbjct: 117 FNDIFR 122
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D + F E Y+ L Y+D S L+ + + K+I ++++SL
Sbjct: 3 MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFET-----SQLQGAKDIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q Q I T+DAQ + G VLV++TG + + +RFSQ F L P+ N ++V ND
Sbjct: 58 PFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVFND 117
Query: 128 IFR 130
IFR
Sbjct: 118 IFR 120
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 11 VDPQLVG--NSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQIL 68
VDPQ+VG FVE Y+ L + YQ + L+ G ++ I I+
Sbjct: 4 VDPQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGK-----FLSGADAIVKHIV 58
Query: 69 SLDYQNYQTEILTVDAQASYCKGVLVLVTG--YMSGKT-GKRRFSQSFFLAPQENGFFVL 125
L +Q +I ++D Q +Y G+++ VTG + G+ + +F Q F LA F ++
Sbjct: 59 ELPFQQTNRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLASNNGSFLLI 118
Query: 126 NDIFRFVDD 134
ND FR V D
Sbjct: 119 NDFFRLVLD 127
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D + F E Y+ L Y+D S L+ + + K I ++++SL
Sbjct: 3 MDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFE-----TSQLQGAKSIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q I T+DAQ + G VLV++TG + + +RFSQ F L P N ++V ND
Sbjct: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFND 117
Query: 128 IFR 130
IFR
Sbjct: 118 IFR 120
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D + +F + Y+ L Y++ S L+ + + K+I ++++SL
Sbjct: 3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFE-----TSQLQGAKDIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q Q I T+DAQ + G VLV++TG + + +RFSQ F L P N ++V ND
Sbjct: 58 PFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFND 117
Query: 128 IFR 130
IFR
Sbjct: 118 IFR 120
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
VD + F E Y+ L Y++ S L+ T + K+I ++++SL
Sbjct: 3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFE-----TTQLQGAKDIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q I T+DAQ + G VLV++TG + + +RFSQ F L P+ + ++V ND
Sbjct: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYND 117
Query: 128 IFRF 131
IFR
Sbjct: 118 IFRL 121
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D V +FVE Y++ L YQD S L+ G I ++ SL
Sbjct: 1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEG-----QQFLGAAAIAGKLGSL 55
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTGYMSGKTGKR----RFSQSFFLAPQENGFFVL 125
+ +I TVD Q S +G +LV V+G + +TG +FSQ F L P F+V
Sbjct: 56 PFAQCHHDINTVDCQPSGPQGGMLVFVSGSL--RTGPDEHPLKFSQMFQLLPAGGNFYVQ 113
Query: 126 NDIFRF 131
ND+FR
Sbjct: 114 NDMFRL 119
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
VD V + F Y++ L Y++ S L+ + + K+I ++++SL
Sbjct: 3 VDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFE-----TSQLQGAKDIVEKLVSL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q I T+DAQ G +LV+VTG + + +R+SQ F L P N ++V ND
Sbjct: 58 PFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFND 117
Query: 128 IFRF 131
IFR
Sbjct: 118 IFRL 121
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71
D + F + Y++ L Y++ S LS G + K I ++++SL
Sbjct: 3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQ-----LQGTKAIVEKLVSLP 57
Query: 72 YQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLNDI 128
+Q Q I T+DAQ + G V+V+VTG + + +R+SQ F L ++VLND+
Sbjct: 58 FQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDL 117
Query: 129 FRF 131
FR
Sbjct: 118 FRL 120
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71
D Q + FV Y++ L Y+D S L+ ++I + I +++ SL
Sbjct: 3 DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFE-----TSAIQGVAGIIEKLTSLP 57
Query: 72 YQNYQTEILTVDAQAS-YCKGVLVLVTGYMSGKTGK--RRFSQSFFLAPQENG-FFVLND 127
+Q Q ++ T+DAQ S G+LVLVTG + K ++Q+F L P G +FVLND
Sbjct: 58 FQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLND 117
Query: 128 IFRFV 132
+FR +
Sbjct: 118 VFRLI 122
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
VD V F Y+ L Y++ S L+ + + ++I +++ SL
Sbjct: 3 VDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFE-----TSQLQGARDIVEKLASL 57
Query: 71 DYQNYQTEILTVDAQASYCKG-VLVLVTG--YMSGKTGKRRFSQSFFLAPQENGFFVLND 127
+Q I T+DAQ + G +LV+VTG + + +R+SQ F L P ++V ND
Sbjct: 58 PFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFND 117
Query: 128 IFR 130
IFR
Sbjct: 118 IFR 120
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V NLP ++ D+++ F KFG I ++ + +R CF FV FE + +A+ K
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 408 SPITFGDRKVYV---EQKKGKLNCLRR 431
+ I+ GD +YV ++K + LRR
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRR 316
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
+D + FV Y+ ++L Y+D+S L+ G + + I +++ SL
Sbjct: 3 LDFTAIATQFVAHYYSTFDSDRKNLAGLYRDNSMLTFEGAQSL-----GAQGITEKLTSL 57
Query: 71 DYQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTGKR--RFSQSFFLAPQENG-FFVLND 127
+Q + E DAQ + G+++LVTG + +R +SQ+F L+ +G +FV ND
Sbjct: 58 PFQKVKHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFND 117
Query: 128 IFRFV 132
IF+ V
Sbjct: 118 IFKLV 122
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 16 VGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY 75
+ F E Y+K L Y+++S L+ + T+ I ++ L +Q
Sbjct: 7 IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTA-----NIVGKLQELPFQRI 61
Query: 76 QTEILTVDAQAS-YCKGVLVLVTGYMSGKTGKR--RFSQSFFLAPQENGFFVLNDIFRFV 132
+ ++ TVDAQ S G+LV+V+G + + +R ++Q+F L P + ++V ND+FR V
Sbjct: 62 EHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPADGAYYVFNDVFRLV 121
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQ 402
+++ ++V NLP DV +++ +F K+G IK + I++ R F+FVEFE +
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSG--RGPAFAFVEFEDHRDAE 60
Query: 403 NALKA-SPITFGDRKVYVE 420
+A++A F R++ VE
Sbjct: 61 DAVRARDGYEFDGRRIRVE 79
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 348 VIFVANL-PMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
++V NL TADQ+ F + G +K +R+ ++ +P F+FVEF +S+ AL
Sbjct: 70 TVYVGNLNSQTTTADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALA 127
Query: 407 ASPITFGDRKVYV 419
+ + FGDR + +
Sbjct: 128 FNGVMFGDRPLKI 140
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 348 VIFVANL-PMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK 406
++V NL TADQ+ F + G +K +R+ ++ +P F+FVEF +S+ AL
Sbjct: 70 TVYVGNLNSQTTTADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALA 127
Query: 407 ASPITFGDRKVYV 419
+ + FGDR + +
Sbjct: 128 FNGVMFGDRPLKI 140
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 349 IFVANL-PMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
++V NL TADQ+ F + G +K +R+ ++ +P F+FVEF +S+ AL
Sbjct: 68 VYVGNLNSQTTTADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 408 SPITFGDRKVYV 419
+ + FGDR + +
Sbjct: 126 NGVMFGDRPLKI 137
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70
VD + F E Y++ L Y+D S L+ G T + I ++++ L
Sbjct: 3 VDFNTLAKQFCEFYYQTFDTDRSQLGNLYRDHSMLTFTG-----TQHQGAQAIVEKLVGL 57
Query: 71 DYQNYQTEILTVDAQASYCKG--VLVLVTGYMS-GKTGKRRFSQSFFLAPQENGFFVLND 127
+ + +I +DAQ + +G V+VLVTG + ++Q F L P + ++V ND
Sbjct: 58 PFGQVRHKISDIDAQPASAQGGDVIVLVTGELCVDGDNPLPYAQVFHLIPDGSSYYVFND 117
Query: 128 IFRF 131
IFR
Sbjct: 118 IFRL 121
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408
IFV N+ DVT +QI+ F G IK + N P + ++EFES + + AL+ +
Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLN 125
Query: 409 PITFGDRKVYVEQKKGKLNCLRR 431
+K+ V +K+ + R
Sbjct: 126 GGELKGKKIAVSRKRTNIPGFNR 148
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNC---FSFVEFESISSMQNAL 405
+++ L +VT D I+ +F +G IK I + +++L PN +++VE+ES Q AL
Sbjct: 139 LYLGRLTRNVTKDHIQEIFATYGKIKM--IDMPSDRLHPNVSKGYAYVEYESPEDAQKAL 196
Query: 406 K 406
K
Sbjct: 197 K 197
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALK-A 407
+FVA + D T +++ F +GPIK + +P ++F+E+E M +A K A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 408 SPITFGDRKVYVEQKKGK 425
R+V V+ ++G+
Sbjct: 165 DGKKIDGRRVLVDVERGR 182
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRI--RTNQLRPNCFSFVEFESISSMQNALK 406
IF+ +LP + T +I +FV FG + + + + TNQ + CF FV F++ +S Q A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK--CFGFVSFDNPASAQAAIQ 439
Query: 407 A-SPITFGDRKVYVEQKKGK 425
A + G +++ V+ K+ K
Sbjct: 440 AMNGFQIGMKRLKVQLKRPK 459
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRI--RTNQLRPNCFSFVEFESISSMQNALK 406
IF+ +LP + T +I +FV FG + + + + TNQ + CF FV F++ +S Q A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK--CFGFVSFDNPASAQAAIQ 439
Query: 407 A-SPITFGDRKVYVEQKKGK 425
A + G +++ V+ K+ K
Sbjct: 440 AMNGFQIGMKRLKVQLKRPK 459
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRI--RTNQLRPNCFSFVEFESISSMQNALK 406
IF+ +LP + T +I +FV FG + + + + TNQ + CF FV F++ +S Q A++
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK--CFGFVSFDNPASAQAAIQ 435
Query: 407 A-SPITFGDRKVYVEQKKGK 425
A + G +++ V+ K+ K
Sbjct: 436 AMNGFQIGMKRLKVQLKRPK 455
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ---LRPNCFSFVEFESISSMQNAL 405
+F+ NL D T +++K VF K G +K+ I + N+ L F FVE+ Q AL
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 406 K 406
K
Sbjct: 792 K 792
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEF 395
A++ +FV NLP T + ++ +F K+GP+ I + +P F+F+ F
Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 326 SADPFSNNALRNNIDDQAAKNP--VIFVANLPMDVTADQIKSVFVKFGPIKANG-IRIRT 382
+ DP+SN+ + +P IFV+ + T +++ F +FGPIK+ ++
Sbjct: 84 AWDPYSNS--------ETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSN 135
Query: 383 NQLRPNCFSFVEFESISSMQNALK-ASPITFGDRKVYVEQKKGKL 426
N + ++F+EFE M+ A K A + DR++ V+ ++G++
Sbjct: 136 NPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRV 180
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 333 NALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSF 392
N R++ D K IFV LP +T ++ + F +GP+ I RP F F
Sbjct: 96 NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGF 155
Query: 393 VEFESISSMQNAL 405
V F+S ++ + L
Sbjct: 156 VSFDSEDAVDSVL 168
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA- 407
IF+ +LP + T +I +F+ FG + + + + + CF FV F++ S Q A++A
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 408 SPITFGDRKVYVEQKKGK 425
+ G +++ V+ K+ K
Sbjct: 439 NGFQIGMKRLKVQLKRPK 456
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 191 NSVMLGGRNIKV 202
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 199 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 253
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 254 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 284
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 196 NSVMLGGRNIKV 207
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 204 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 258
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 259 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 289
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 189
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 190 NSVMLGGRNIKV 201
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 198 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 252
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 253 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 283
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 196 NSVMLGGRNIKV 207
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 204 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 258
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 259 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 289
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRI--RTNQLRPNCFSFVEFESISSMQNALK 406
+F+ +LP + +++ +F+ FG I ++ + + TNQ + CF FV F++ SS Q A++
Sbjct: 403 LFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSK--CFGFVSFDNPSSAQTAIQ 460
Query: 407 A-SPITFGDRKVYVEQKKGK 425
A + G +++ V+ K+ K
Sbjct: 461 AMNGFQIGMKRLKVQLKRPK 480
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V ++ ++ D I+ F FGPIK+ + + ++ F+FVE+E + Q AL +
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 408 SPITFGDRKVYV 419
+ + G R + V
Sbjct: 162 NSVMLGGRNIKV 173
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 315 NLKKGSNTTQSSADPFSNNALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIK 374
N+K G + A P + + + ++A I+VA++ D++ D IKSVF FG IK
Sbjct: 170 NIKVGRPSNIGQAQP-----IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 224
Query: 375 ANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405
+ + + + F+E+E S Q+A+
Sbjct: 225 SCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 255
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
++V NLP ++T D++K F K+G I ++ + ++ F FV F S + A+ K
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 408 SPITFGDRKVYV---EQKKGKLNCLRR 431
+ I+ G+ +YV ++K + LRR
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRR 326
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRI--RTNQLRPNCFSFVEFESISSMQNALK 406
IF+ +LP + T ++ +F+ FG + + + + TNQ + CF FV F++ +S Q A++
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSK--CFGFVSFDNPASAQAAIQ 426
Query: 407 A-SPITFGDRKVYVEQKKGK 425
A + G +++ V+ K+ K
Sbjct: 427 AMNGFQIGMKRLKVQLKRPK 446
>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus
GN=Eif4b PE=1 SV=1
Length = 611
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
F+ NLP DVT D IK F R +N R F + EFE + S+ +AL
Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156
Query: 408 SPITFGDRKVYVE 420
+ + G+R++ V+
Sbjct: 157 NEESLGNRRIRVD 169
>sp|P13469|MODU_DROME DNA-binding protein modulo OS=Drosophila melanogaster GN=mod PE=1
SV=2
Length = 542
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNA 404
KN ++FV NLP + + ++F KFG + A R L N + F++ + +
Sbjct: 173 KNQIVFVTNLPNEYLHKDLVALFAKFGRLSA---LQRFTNLNGNKSVLIAFDTSTGAEAV 229
Query: 405 LKASP--ITFGDRKVYVEQKKGK 425
L+A P +T GD + V Q + K
Sbjct: 230 LQAKPKALTLGDNVLSVSQPRNK 252
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL-KA 407
+FV ++P DVT +Q+ F F PIK + + ++ R F FV F + AL KA
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIK-HAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKA 86
Query: 408 SPITF 412
F
Sbjct: 87 RKTKF 91
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
GN=EIF4B PE=1 SV=2
Length = 611
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407
F+ NLP DVT + IK F R +N R F + EFE + S+ +AL
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSL 156
Query: 408 SPITFGDRKVYVE 420
+ + G+R++ V+
Sbjct: 157 NEESLGNRRIRVD 169
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRT-NQLRPNC-FSFVEFESISSMQNALK 406
IFV NLP + + + F +FGPI+ N I I+ +++ N F F+ + + S A++
Sbjct: 167 IFVGNLPTWIKKPEFEEFFRQFGPIE-NVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 407 ASPITFGDRKVYVEQKKGK 425
+ F R + V+ GK
Sbjct: 226 FDGVEFHGRILTVKLDDGK 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,245,506
Number of Sequences: 539616
Number of extensions: 6269236
Number of successful extensions: 27712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 727
Number of HSP's that attempted gapping in prelim test: 22397
Number of HSP's gapped (non-prelim): 4114
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)