Query 037989
Match_columns 432
No_of_seqs 363 out of 2400
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 5.1E-57 1.1E-61 455.7 30.0 359 1-427 1-369 (419)
2 KOG2104 Nuclear transport fact 100.0 7.5E-34 1.6E-38 233.3 11.0 117 12-133 5-123 (126)
3 cd00780 NTF2 Nuclear transport 100.0 1.9E-31 4.2E-36 228.9 15.0 117 12-133 1-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 6.5E-26 1.4E-30 193.5 12.7 112 16-131 1-118 (118)
5 KOG4353 RNA export factor NXT1 99.9 1.5E-23 3.4E-28 174.9 6.6 115 13-134 12-137 (139)
6 PLN03134 glycine-rich RNA-bind 99.6 4.2E-15 9.1E-20 131.8 12.6 84 344-427 32-116 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.9E-13 4.1E-18 137.9 14.6 83 344-426 267-350 (352)
8 KOG0149 Predicted RNA-binding 99.5 7.2E-14 1.6E-18 129.3 7.4 79 345-423 11-89 (247)
9 KOG0122 Translation initiation 99.5 1.1E-12 2.3E-17 122.1 13.4 84 342-425 185-269 (270)
10 PF00076 RRM_1: RNA recognitio 99.4 4.9E-13 1.1E-17 102.3 8.9 69 349-418 1-70 (70)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5.8E-13 1.3E-17 134.4 11.8 82 346-427 3-85 (352)
12 TIGR01659 sex-lethal sex-letha 99.4 1.2E-12 2.6E-17 131.9 11.8 85 341-425 102-187 (346)
13 KOG0113 U1 small nuclear ribon 99.3 6.3E-12 1.4E-16 119.9 11.3 83 344-426 99-182 (335)
14 PLN03213 repressor of silencin 99.3 5.6E-12 1.2E-16 126.9 9.9 78 343-424 7-87 (759)
15 TIGR01645 half-pint poly-U bin 99.3 8.3E-12 1.8E-16 132.9 11.8 83 345-427 203-286 (612)
16 PF14259 RRM_6: RNA recognitio 99.3 8E-12 1.7E-16 96.3 8.5 69 349-418 1-70 (70)
17 PLN03120 nucleic acid binding 99.3 1E-11 2.2E-16 118.6 10.8 77 345-424 3-79 (260)
18 TIGR01645 half-pint poly-U bin 99.3 7E-12 1.5E-16 133.5 10.7 79 345-423 106-185 (612)
19 KOG0146 RNA-binding protein ET 99.3 2E-12 4.3E-17 121.5 5.3 87 341-427 280-367 (371)
20 KOG0107 Alternative splicing f 99.3 7.6E-12 1.6E-16 111.2 8.6 79 344-427 8-87 (195)
21 KOG0125 Ataxin 2-binding prote 99.3 1.7E-11 3.7E-16 118.2 11.5 79 345-425 95-174 (376)
22 TIGR01659 sex-lethal sex-letha 99.3 2.8E-11 6.1E-16 122.1 11.4 80 346-425 193-275 (346)
23 KOG0121 Nuclear cap-binding pr 99.3 1.3E-11 2.9E-16 104.3 7.0 80 344-423 34-114 (153)
24 KOG0126 Predicted RNA-binding 99.2 1.8E-12 3.8E-17 115.7 0.6 87 336-422 25-112 (219)
25 smart00362 RRM_2 RNA recogniti 99.2 7.9E-11 1.7E-15 89.0 9.5 71 348-420 1-72 (72)
26 PLN03121 nucleic acid binding 99.2 6.4E-11 1.4E-15 111.5 10.6 76 344-422 3-78 (243)
27 KOG0105 Alternative splicing f 99.2 3.2E-11 6.9E-16 108.0 7.9 77 345-424 5-82 (241)
28 KOG4207 Predicted splicing fac 99.2 1.9E-11 4.2E-16 111.1 6.0 79 345-423 12-91 (256)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.3E-10 2.9E-15 123.1 12.9 80 345-424 294-374 (509)
30 TIGR01628 PABP-1234 polyadenyl 99.2 8.1E-11 1.8E-15 126.4 11.3 78 347-424 1-79 (562)
31 TIGR01628 PABP-1234 polyadenyl 99.2 8.3E-11 1.8E-15 126.4 10.8 82 344-426 283-365 (562)
32 COG0724 RNA-binding proteins ( 99.2 1.6E-10 3.4E-15 109.7 10.5 78 346-423 115-193 (306)
33 smart00360 RRM RNA recognition 99.2 1.9E-10 4.2E-15 86.5 8.9 70 351-420 1-71 (71)
34 TIGR01622 SF-CC1 splicing fact 99.1 1.9E-10 4.1E-15 120.3 11.5 78 346-423 186-264 (457)
35 TIGR01622 SF-CC1 splicing fact 99.1 3.2E-10 6.8E-15 118.6 11.9 82 343-424 86-167 (457)
36 KOG0148 Apoptosis-promoting RN 99.1 1.1E-10 2.3E-15 110.3 7.3 81 346-426 62-143 (321)
37 TIGR01648 hnRNP-R-Q heterogene 99.1 2.6E-10 5.6E-15 121.3 11.2 78 345-423 57-136 (578)
38 KOG0127 Nucleolar protein fibr 99.1 2.6E-10 5.7E-15 116.4 10.2 88 340-427 286-380 (678)
39 KOG0124 Polypyrimidine tract-b 99.1 7.6E-11 1.6E-15 115.0 4.4 76 346-421 113-189 (544)
40 KOG0130 RNA-binding protein RB 99.1 3.4E-10 7.3E-15 96.6 7.6 82 342-423 68-150 (170)
41 KOG0111 Cyclophilin-type pepti 99.1 1.1E-10 2.3E-15 107.1 4.8 82 344-425 8-90 (298)
42 cd00590 RRM RRM (RNA recogniti 99.1 1.3E-09 2.7E-14 82.8 10.0 73 348-421 1-74 (74)
43 KOG0108 mRNA cleavage and poly 99.1 2.9E-10 6.4E-15 116.7 8.1 80 347-426 19-99 (435)
44 KOG0145 RNA-binding protein EL 99.0 2.4E-09 5.2E-14 100.6 11.3 87 343-429 38-125 (360)
45 KOG0114 Predicted RNA-binding 99.0 1.8E-09 4E-14 88.2 9.1 78 344-424 16-94 (124)
46 TIGR01648 hnRNP-R-Q heterogene 99.0 1.6E-09 3.5E-14 115.3 11.4 73 346-426 233-308 (578)
47 KOG0131 Splicing factor 3b, su 99.0 5.4E-10 1.2E-14 100.1 6.4 81 343-423 6-87 (203)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2E-09 4.4E-14 113.6 10.7 73 346-424 2-77 (481)
49 KOG0127 Nucleolar protein fibr 99.0 9.2E-10 2E-14 112.5 7.3 83 345-427 4-87 (678)
50 KOG0145 RNA-binding protein EL 99.0 2.9E-09 6.4E-14 100.0 9.8 82 344-425 276-358 (360)
51 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 3.5E-09 7.6E-14 111.8 11.8 77 343-424 272-350 (481)
52 KOG0148 Apoptosis-promoting RN 99.0 3E-09 6.4E-14 100.6 9.7 78 343-426 161-239 (321)
53 KOG0117 Heterogeneous nuclear 99.0 2.6E-09 5.7E-14 107.0 9.6 84 344-427 81-166 (506)
54 KOG0144 RNA-binding protein CU 98.9 3.8E-09 8.2E-14 105.4 8.1 84 341-424 29-116 (510)
55 smart00361 RRM_1 RNA recogniti 98.9 8E-09 1.7E-13 80.0 8.3 60 360-419 2-69 (70)
56 KOG0146 RNA-binding protein ET 98.9 1.7E-09 3.6E-14 102.0 4.9 88 344-432 17-109 (371)
57 KOG4205 RNA-binding protein mu 98.9 1.8E-09 3.9E-14 106.6 5.2 83 345-427 5-87 (311)
58 KOG0109 RNA-binding protein LA 98.9 3.9E-09 8.4E-14 100.7 6.6 72 347-426 3-75 (346)
59 KOG0144 RNA-binding protein CU 98.8 5.1E-09 1.1E-13 104.5 7.2 90 339-428 417-507 (510)
60 KOG0415 Predicted peptidyl pro 98.8 9.4E-09 2E-13 100.3 6.4 79 346-424 239-318 (479)
61 KOG0131 Splicing factor 3b, su 98.8 1.2E-08 2.6E-13 91.5 6.3 82 345-426 95-178 (203)
62 PF13893 RRM_5: RNA recognitio 98.8 3.3E-08 7.2E-13 72.9 7.7 55 363-422 1-56 (56)
63 KOG0147 Transcriptional coacti 98.8 8.5E-09 1.9E-13 105.9 5.9 78 346-423 278-356 (549)
64 KOG4212 RNA-binding protein hn 98.8 2.9E-08 6.2E-13 99.3 9.1 79 345-424 43-123 (608)
65 KOG0117 Heterogeneous nuclear 98.7 2.4E-08 5.3E-13 100.2 7.9 71 346-424 259-330 (506)
66 TIGR01642 U2AF_lg U2 snRNP aux 98.7 1E-07 2.2E-12 101.1 12.6 76 341-422 170-257 (509)
67 KOG0110 RNA-binding protein (R 98.6 2.5E-08 5.4E-13 105.1 4.4 79 346-424 613-692 (725)
68 KOG4661 Hsp27-ERE-TATA-binding 98.6 2.6E-07 5.7E-12 95.0 11.2 83 343-425 402-485 (940)
69 KOG0124 Polypyrimidine tract-b 98.6 1.1E-07 2.4E-12 93.2 7.5 83 344-426 208-291 (544)
70 KOG0123 Polyadenylate-binding 98.6 1.6E-07 3.5E-12 95.6 8.8 74 349-425 79-153 (369)
71 KOG4208 Nucleolar RNA-binding 98.6 4.5E-07 9.9E-12 83.0 10.1 81 344-424 47-129 (214)
72 KOG0153 Predicted RNA-binding 98.5 2.3E-07 4.9E-12 90.8 8.4 74 345-424 227-302 (377)
73 KOG4205 RNA-binding protein mu 98.5 1.1E-07 2.3E-12 94.1 6.2 83 345-427 96-178 (311)
74 KOG4206 Spliceosomal protein s 98.5 3.5E-07 7.5E-12 85.0 8.3 81 347-430 10-95 (221)
75 PF10429 Mtr2: Nuclear pore RN 98.5 2.3E-07 4.9E-12 82.2 5.4 98 14-118 4-109 (166)
76 KOG0132 RNA polymerase II C-te 98.5 4E-07 8.8E-12 96.8 8.0 74 346-425 421-495 (894)
77 KOG0110 RNA-binding protein (R 98.4 5E-07 1.1E-11 95.5 8.6 78 346-423 515-596 (725)
78 cd00531 NTF2_like Nuclear tran 98.4 3.6E-06 7.9E-11 69.8 12.1 114 18-131 2-123 (124)
79 KOG0109 RNA-binding protein LA 98.4 3.1E-07 6.7E-12 87.9 5.0 74 346-427 78-152 (346)
80 KOG1457 RNA binding protein (c 98.4 5.7E-06 1.2E-10 76.7 12.1 88 344-431 32-124 (284)
81 KOG4209 Splicing factor RNPS1, 98.3 7.6E-07 1.6E-11 84.9 6.4 85 343-427 98-182 (231)
82 KOG0106 Alternative splicing f 98.2 1.1E-06 2.4E-11 82.2 4.6 70 347-424 2-72 (216)
83 KOG0226 RNA-binding proteins [ 98.2 1E-06 2.2E-11 83.0 4.2 84 342-425 186-270 (290)
84 KOG1548 Transcription elongati 98.2 4.7E-06 1E-10 81.7 8.7 80 344-424 132-220 (382)
85 KOG0151 Predicted splicing reg 98.2 5.2E-06 1.1E-10 87.7 9.1 84 341-424 169-256 (877)
86 KOG4212 RNA-binding protein hn 98.2 3E-06 6.6E-11 85.1 7.0 74 343-421 533-607 (608)
87 KOG0123 Polyadenylate-binding 98.1 1E-05 2.2E-10 82.6 8.4 74 347-426 2-76 (369)
88 KOG0533 RRM motif-containing p 98.0 2.2E-05 4.7E-10 75.0 8.8 79 345-424 82-161 (243)
89 PF04059 RRM_2: RNA recognitio 97.9 6E-05 1.3E-09 62.1 9.0 78 347-424 2-86 (97)
90 KOG4211 Splicing factor hnRNP- 97.8 4.9E-05 1.1E-09 77.8 7.7 76 345-423 9-84 (510)
91 KOG4660 Protein Mei2, essentia 97.8 2.3E-05 5E-10 81.2 4.4 69 345-418 74-143 (549)
92 KOG4454 RNA binding protein (R 97.6 2.5E-05 5.4E-10 72.3 2.2 78 345-424 8-86 (267)
93 PF15008 DUF4518: Domain of un 97.6 0.00031 6.6E-09 67.8 9.2 123 11-133 125-260 (262)
94 KOG0120 Splicing factor U2AF, 97.4 0.00014 3.1E-09 75.8 4.0 80 345-424 288-368 (500)
95 PF08777 RRM_3: RNA binding mo 97.3 0.00054 1.2E-08 57.5 6.2 69 346-420 1-75 (105)
96 KOG3763 mRNA export factor TAP 97.3 0.0012 2.5E-08 69.4 9.7 119 12-134 336-498 (585)
97 KOG4211 Splicing factor hnRNP- 97.3 0.00057 1.2E-08 70.2 7.2 77 345-422 102-179 (510)
98 KOG4210 Nuclear localization s 97.1 0.00037 8E-09 68.7 3.3 82 346-427 184-266 (285)
99 KOG0147 Transcriptional coacti 97.0 0.00026 5.6E-09 73.4 1.7 81 342-422 175-255 (549)
100 KOG1457 RNA binding protein (c 96.9 0.00087 1.9E-08 62.5 4.1 63 346-412 210-273 (284)
101 PF13474 SnoaL_3: SnoaL-like d 96.9 0.011 2.3E-07 49.4 10.2 109 18-130 2-117 (121)
102 KOG0129 Predicted RNA-binding 96.8 0.0036 7.9E-08 64.8 7.5 63 345-408 258-326 (520)
103 KOG4849 mRNA cleavage factor I 96.7 0.0014 3.1E-08 64.5 3.5 77 343-419 77-156 (498)
104 KOG0106 Alternative splicing f 96.6 0.0013 2.7E-08 61.9 2.8 69 345-421 98-167 (216)
105 PF11608 Limkain-b1: Limkain b 96.6 0.009 2E-07 47.6 6.7 68 347-423 3-75 (90)
106 KOG1995 Conserved Zn-finger pr 96.6 0.0028 6.1E-08 62.9 4.8 84 343-426 63-155 (351)
107 KOG0129 Predicted RNA-binding 96.5 0.0072 1.6E-07 62.6 7.6 68 345-412 369-437 (520)
108 TIGR02246 conserved hypothetic 96.5 0.068 1.5E-06 45.1 12.5 109 17-130 6-124 (128)
109 COG5175 MOT2 Transcriptional r 96.2 0.01 2.3E-07 58.4 6.4 81 344-424 112-202 (480)
110 KOG1190 Polypyrimidine tract-b 96.2 0.028 6E-07 56.9 9.2 74 346-424 297-372 (492)
111 PF14534 DUF4440: Domain of un 96.1 0.058 1.3E-06 43.6 9.5 100 19-124 3-107 (107)
112 KOG4206 Spliceosomal protein s 96.0 0.027 5.7E-07 52.9 7.7 73 345-422 145-219 (221)
113 KOG3152 TBP-binding protein, a 96.0 0.0038 8.3E-08 59.4 2.2 71 346-416 74-157 (278)
114 KOG2314 Translation initiation 95.9 0.031 6.8E-07 58.6 8.7 77 344-421 56-140 (698)
115 KOG4307 RNA binding protein RB 95.8 0.027 5.8E-07 60.3 7.8 77 345-421 865-943 (944)
116 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.031 6.7E-07 40.8 5.7 52 347-405 2-53 (53)
117 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.054 1.2E-06 45.0 7.4 78 345-423 5-90 (100)
118 KOG1190 Polypyrimidine tract-b 95.5 0.0091 2E-07 60.2 2.8 72 345-422 27-101 (492)
119 KOG1365 RNA-binding protein Fu 95.4 0.011 2.4E-07 59.2 2.8 73 346-418 161-236 (508)
120 PF08952 DUF1866: Domain of un 95.2 0.072 1.6E-06 47.0 7.2 56 362-425 52-107 (146)
121 KOG0112 Large RNA-binding prot 95.2 0.021 4.6E-07 62.7 4.4 74 345-424 454-530 (975)
122 KOG4307 RNA binding protein RB 95.1 0.051 1.1E-06 58.3 6.8 82 341-422 429-511 (944)
123 KOG1365 RNA-binding protein Fu 94.9 0.028 6E-07 56.4 4.1 76 346-422 280-359 (508)
124 KOG0105 Alternative splicing f 94.8 0.13 2.7E-06 47.1 7.7 56 346-408 115-170 (241)
125 PF12893 Lumazine_bd_2: Putati 94.6 0.48 1E-05 39.9 10.6 104 18-130 7-116 (116)
126 KOG0120 Splicing factor U2AF, 94.6 0.1 2.2E-06 55.0 7.6 62 361-422 424-489 (500)
127 KOG1548 Transcription elongati 94.5 0.14 3.1E-06 50.9 7.8 77 345-425 264-352 (382)
128 KOG0115 RNA-binding protein p5 94.3 0.039 8.5E-07 52.7 3.3 75 346-421 31-110 (275)
129 KOG1855 Predicted RNA-binding 93.8 0.056 1.2E-06 55.0 3.6 67 342-408 227-306 (484)
130 KOG2193 IGF-II mRNA-binding pr 93.6 0.048 1E-06 55.4 2.8 73 347-425 2-76 (584)
131 PF12680 SnoaL_2: SnoaL-like d 93.6 0.33 7.1E-06 38.4 7.3 72 21-100 1-75 (102)
132 KOG0128 RNA-binding protein SA 93.2 0.006 1.3E-07 66.5 -4.6 64 345-408 666-729 (881)
133 KOG1456 Heterogeneous nuclear 93.1 0.53 1.2E-05 47.4 8.9 77 343-424 284-362 (494)
134 cd00781 ketosteroid_isomerase 92.1 0.95 2.1E-05 37.8 8.4 51 18-71 6-57 (122)
135 KOG0112 Large RNA-binding prot 91.8 0.047 1E-06 60.2 -0.2 80 342-422 368-448 (975)
136 PF10309 DUF2414: Protein of u 90.8 1.4 3.1E-05 33.2 7.0 55 345-408 4-62 (62)
137 KOG2253 U1 snRNP complex, subu 90.1 0.38 8.3E-06 51.6 4.7 68 345-421 39-107 (668)
138 KOG0128 RNA-binding protein SA 89.9 0.14 3E-06 56.4 1.3 75 346-421 736-811 (881)
139 KOG2202 U2 snRNP splicing fact 89.2 0.18 4E-06 48.2 1.4 61 361-422 83-145 (260)
140 KOG2416 Acinus (induces apopto 89.1 1.2 2.7E-05 47.3 7.4 74 345-424 443-521 (718)
141 PF03467 Smg4_UPF3: Smg-4/UPF3 89.1 0.53 1.1E-05 43.2 4.3 79 344-422 5-95 (176)
142 PF15023 DUF4523: Protein of u 88.8 2 4.3E-05 37.9 7.3 73 343-422 83-159 (166)
143 KOG1456 Heterogeneous nuclear 88.4 2 4.2E-05 43.5 8.0 74 347-425 121-199 (494)
144 KOG1996 mRNA splicing factor [ 88.0 1.6 3.5E-05 42.7 6.9 62 361-422 301-364 (378)
145 PF08675 RNA_bind: RNA binding 87.2 2.8 6E-05 33.6 6.6 54 346-408 9-62 (87)
146 TIGR02096 conserved hypothetic 86.7 4.8 0.0001 33.8 8.6 62 20-84 3-67 (129)
147 KOG4285 Mitotic phosphoprotein 84.5 4.4 9.6E-05 39.9 7.9 69 346-421 197-266 (350)
148 PF08332 CaMKII_AD: Calcium/ca 84.2 18 0.00038 31.5 10.9 111 14-127 3-122 (128)
149 KOG2591 c-Mpl binding protein, 82.6 1.7 3.7E-05 46.0 4.5 70 345-421 174-248 (684)
150 KOG2068 MOT2 transcription fac 81.7 0.61 1.3E-05 46.4 0.9 80 345-424 76-162 (327)
151 KOG4676 Splicing factor, argin 81.1 2.5 5.5E-05 42.9 5.0 73 347-419 8-83 (479)
152 KOG4210 Nuclear localization s 81.1 0.78 1.7E-05 45.3 1.5 76 345-420 87-163 (285)
153 KOG4410 5-formyltetrahydrofola 80.8 5 0.00011 39.2 6.6 51 344-399 328-378 (396)
154 PF13577 SnoaL_4: SnoaL-like d 79.1 16 0.00034 30.2 8.8 67 17-85 9-78 (127)
155 KOG2135 Proteins containing th 77.1 1.7 3.7E-05 45.2 2.5 73 346-424 372-445 (526)
156 PF03880 DbpA: DbpA RNA bindin 76.6 8.2 0.00018 29.8 5.7 68 348-422 2-74 (74)
157 PF07576 BRAP2: BRCA1-associat 70.1 46 0.00099 28.1 9.1 67 346-414 12-81 (110)
158 KOG4660 Protein Mei2, essentia 67.7 9.1 0.0002 40.7 5.2 78 346-423 388-471 (549)
159 PF04847 Calcipressin: Calcipr 62.3 29 0.00064 32.0 7.0 60 359-424 8-70 (184)
160 PF11767 SET_assoc: Histone ly 61.3 49 0.0011 25.3 6.9 56 356-420 10-66 (66)
161 COG4319 Ketosteroid isomerase 60.4 54 0.0012 28.8 7.9 93 30-128 26-128 (137)
162 PF15601 Imm42: Immunity prote 56.1 3.7 8.1E-05 35.9 0.0 68 19-91 16-93 (134)
163 PF07366 SnoaL: SnoaL-like pol 56.1 1.1E+02 0.0024 25.3 9.2 60 22-85 5-67 (126)
164 KOG3266 Predicted glycine clea 51.7 48 0.001 29.7 6.1 85 1-102 1-85 (172)
165 COG5073 VID24 Vacuolar import 46.1 10 0.00022 36.2 1.2 75 19-104 52-126 (272)
166 PF03284 PHZA_PHZB: Phenazine 45.5 1.8E+02 0.004 25.8 8.7 103 13-117 16-129 (162)
167 PF05941 Chordopox_A20R: Chord 42.4 87 0.0019 31.6 7.1 100 17-129 172-281 (334)
168 KOG4676 Splicing factor, argin 42.2 5.5 0.00012 40.6 -1.2 64 346-413 151-214 (479)
169 PF12870 Lumazine_bd: Lumazine 40.2 58 0.0013 26.0 4.8 45 76-125 66-111 (111)
170 smart00596 PRE_C2HC PRE_C2HC d 38.1 54 0.0012 25.3 3.8 62 361-425 2-65 (69)
171 PF03468 XS: XS domain; Inter 37.0 45 0.00097 28.4 3.7 46 359-407 30-76 (116)
172 smart00593 RUN domain involved 36.6 34 0.00073 25.5 2.6 44 19-71 12-55 (64)
173 PRK08241 RNA polymerase factor 34.8 4.3E+02 0.0094 26.2 11.1 55 13-70 212-267 (339)
174 PF15513 DUF4651: Domain of un 34.2 65 0.0014 24.3 3.6 20 361-380 9-28 (62)
175 TIGR02960 SigX5 RNA polymerase 33.1 2.1E+02 0.0046 28.1 8.5 52 16-70 205-257 (324)
176 KOG2318 Uncharacterized conser 33.0 1.5E+02 0.0031 32.2 7.3 75 345-419 173-300 (650)
177 PF12642 TpcC: Conjugative tra 32.9 2.2E+02 0.0049 26.6 8.2 87 15-125 140-231 (232)
178 cd06404 PB1_aPKC PB1 domain is 32.0 72 0.0016 25.6 3.8 47 25-71 22-69 (83)
179 KOG0804 Cytoplasmic Zn-finger 31.4 1.7E+02 0.0036 30.8 7.3 67 346-414 74-142 (493)
180 PF07858 LEH: Limonene-1,2-epo 29.4 3.6E+02 0.0077 23.2 8.0 66 12-84 2-70 (125)
181 PF07530 PRE_C2HC: Associated 28.2 97 0.0021 23.7 3.9 64 361-426 2-66 (68)
182 COG4875 Uncharacterized protei 27.5 4.1E+02 0.0089 23.0 11.5 113 9-128 32-148 (156)
183 COG0724 RNA-binding proteins ( 26.2 91 0.002 28.6 4.2 38 342-379 221-258 (306)
184 PF02759 RUN: RUN domain; Int 25.4 44 0.00095 28.2 1.7 50 13-71 65-123 (133)
185 PRK11901 hypothetical protein; 25.0 5E+02 0.011 26.2 9.1 66 342-412 241-308 (327)
186 PF07292 NID: Nmi/IFP 35 domai 23.3 1.2E+02 0.0026 24.6 3.7 32 391-422 1-34 (88)
187 KOG4483 Uncharacterized conser 21.3 1.5E+02 0.0032 30.7 4.7 56 346-407 391-446 (528)
188 KOG4454 RNA binding protein (R 21.2 23 0.0005 33.6 -0.9 64 343-407 77-144 (267)
189 PF11533 DUF3225: Protein of u 20.9 5.5E+02 0.012 22.2 12.3 112 14-133 10-124 (125)
190 KOG2295 C2H2 Zn-finger protein 20.8 17 0.00038 38.7 -2.0 70 345-414 230-300 (648)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-57 Score=455.72 Aligned_cols=359 Identities=41% Similarity=0.660 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEe
Q 037989 1 MAAQAESSAKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEIL 80 (432)
Q Consensus 1 ma~~~~~~~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~ 80 (432)
|++++.....++++.||+.||+|||++|++.|+.||+||.+.|.|+|.|.||+|..++|+++|+++|++|+|..|+++|.
T Consensus 1 ~~~~~~~~~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~ 80 (419)
T KOG0116|consen 1 MDAQAMLSPVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEIS 80 (419)
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEE
Confidence 44455445779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeCCCcEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEEEEeceEEeecCccccccccCCCccCCCCCCCCCCCC
Q 037989 81 TVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFFVLNDIFRFVDDDLSVGMVMPINDVDKTAAPVTTTSA 159 (432)
Q Consensus 81 s~d~q~s~~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (432)
++|+|.|+++||+|+|+|+|++++ ++|+|+|||+|+|++++|||+||||||||+.+..+++ .. ..
T Consensus 81 tvdsQ~S~~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~~-~~-------------~v 146 (419)
T KOG0116|consen 81 TVDSQASLEKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEAN-TD-------------EV 146 (419)
T ss_pred EEehhhhccCCeEEEEEEEEEeCCCcceEEEEEEEEeecCCceEEEechhhhcccccccccc-cc-------------cC
Confidence 999999999999999999999999 9999999999999999999999999999988722100 00 00
Q ss_pred CCCCCccccCcccccCcccccccccccCCCcchhhcccccccccCCCCCCCCCCCCccccCCCCcCccccccccccccCC
Q 037989 160 PESEPVQVANQSVTNHTTTTIMETAKTTLPDEVITKENDKKISETLPQNGHDQDNHSVSNQTSTTTSSAEAISTTTTNNV 239 (432)
Q Consensus 160 pe~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (432)
|++-+.........+. ..+ + +....... +..+..+ . .+
T Consensus 147 p~~~~~~~~~~~~~~~----~~~--------~---------~~~~~~~~----~~~~~~~---~--------------~V 184 (419)
T KOG0116|consen 147 PEANPAVVVSVEKASQ----LVE--------A---------VVESEPEP----EPEPKAE---D--------------EV 184 (419)
T ss_pred CCCCcceeeccccccc----ccc--------c---------ccccCCCC----ccccccc---C--------------ce
Confidence 0000000000000000 000 0 00000000 0000000 0 00
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCchhhHhhhccCCCCCCCCCCCCCC----
Q 037989 240 NRPAETSSHDHLHKKANDHLIPEKKSGVANHDHPPVVSEIKTPRTPDSSSRKSFASIVHALKDNSSPFQNKVPPPN---- 315 (432)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~~~~~~~~~~~~~~kks~Asi~~~~k~~~~p~~~~~~~~~---- 315 (432)
.++.. +..+.+ ..++...+...+.. + ...+ ..++.+.+++|||||+++++.+.++......|..
T Consensus 185 ~~~~~--------~~~~~~-~~~~~~ee~v~~~~-~-~~~p-~~~~~~~~~~s~asv~~~~~~~~~~~~~~~~p~~~~~~ 252 (419)
T KOG0116|consen 185 EVPEE--------ATVEDE-AKEKTKEELVIQQT-V-SEAP-AAPQGDAPKKSFASVVKVLKKSAAVQQSKGSPPQIQPQ 252 (419)
T ss_pred ecccc--------cccccc-ccccCchhhccccc-c-cCCC-ccccccccchhhhhhhhhcccccccceeccCCCccccc
Confidence 00000 000000 11111111000000 0 0011 1126789999999999998877665222221211
Q ss_pred --CCCCCCCCCCCCC-CCCCc--cCCCCcCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccE
Q 037989 316 --LKKGSNTTQSSAD-PFSNN--ALRNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCF 390 (432)
Q Consensus 316 --p~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gf 390 (432)
|...+.+...+.+ .+... ....+..+...++..|||+|||++++..+|+++|++||.|+..+|.++...++..||
T Consensus 253 ~~p~~~~~~~~~s~~~~p~~~~~~~n~~~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~f 332 (419)
T KOG0116|consen 253 QQPSTKPQAERQSKPPSPVRESKSGNSNNQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCF 332 (419)
T ss_pred cCCccCcchhhccCCCCccccccccccCCcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCce
Confidence 2222221111111 11111 112344455567778999999999999999999999999999999998855666699
Q ss_pred EEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccCCcc
Q 037989 391 SFVEFESISSMQNALKASPITFGDRKVYVEQKKGKLN 427 (432)
Q Consensus 391 aFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~~~~ 427 (432)
|||+|.+..+++.+|.+.++.|+||+|.|++++++.+
T Consensus 333 gFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~~ 369 (419)
T KOG0116|consen 333 GFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGFR 369 (419)
T ss_pred EEEEEeecchhhhhhhcCccccCCeeEEEEecccccc
Confidence 9999999999999999999999999999999998544
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-34 Score=233.32 Aligned_cols=117 Identities=33% Similarity=0.522 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc
Q 037989 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~ 91 (432)
.++.||..||++||.+||.+|..|..||.+.|+|+|+|. ...|.++|.+|+.||||++|++.|+++||||+++||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGq-----q~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~g~ 79 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQ-----QIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPDGG 79 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcch-----hhcchHHHHHHHhcCChhhhhceeeecccccCCCCc
Confidence 679999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeCC-CCceeEEEEEeeeeC-CeEEEEeceEEeec
Q 037989 92 VLVLVTGYMSGKT-GKRRFSQSFFLAPQE-NGFFVLNDIFRFVD 133 (432)
Q Consensus 92 vlV~V~G~l~~~~-~~~~F~qtF~L~p~~-~~y~V~nDifr~~~ 133 (432)
|||+|+|.|+.++ +..+|+|+|+|.|+. ++|||.|||||+--
T Consensus 80 ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 80 ILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred EEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 9999999999999 999999999999985 89999999999854
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.97 E-value=1.9e-31 Score=228.87 Aligned_cols=117 Identities=45% Similarity=0.745 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCC-CCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 037989 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPG-PDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~-~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~ 90 (432)
++++||+.||++||++|+++|+.|++||+++|.|+|+| . .+.|.++|.++|++|+++.++++|.++|||++.++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~-----~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~ 75 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMK-----QVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSG 75 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCce-----EecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCC
Confidence 46899999999999999999999999999999999999 5 89999999999999999889999999999999999
Q ss_pred cEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 91 GVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 91 ~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
+|||+|+|.|+.++ ..|+|+|+|+|.+++++|||.||||||++
T Consensus 76 ~ili~V~G~~~~~~~~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 76 GVIVMVTGSLKLDEQPPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred CEEEEEEEEEEECCCCceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 99999999999998 99999999999999999999999999985
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.93 E-value=6.5e-26 Score=193.47 Aligned_cols=112 Identities=42% Similarity=0.683 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcc-Ccccccccc-cCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeee--eeCCCc
Q 037989 16 VGNSFVEQYFKALHQ-YPEHLHRFY-QDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQ--ASYCKG 91 (432)
Q Consensus 16 vg~~Fv~~YY~~l~~-~p~~l~~fY-~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q--~s~~~~ 91 (432)
||+.||++||+.|++ +|+.|++|| .+.|.++|.|. ..+.|.++|.++|.+|+.+.+++.|.++||| ++.+++
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~----~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN----RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE----CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc----hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCc
Confidence 799999999999999 999999999 78889999985 3789999999999999999889999999999 578999
Q ss_pred EEEEEEEEEeeCC-C-CceeEEEEEeeeeCCeEEEEeceEEe
Q 037989 92 VLVLVTGYMSGKT-G-KRRFSQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 92 vlV~V~G~l~~~~-~-~~~F~qtF~L~p~~~~y~V~nDifr~ 131 (432)
|+|+|+|.++.++ + .|+|+|+|+|.+.+++|+|.||||||
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999999 4 79999999999999999999999997
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.89 E-value=1.5e-23 Score=174.92 Aligned_cols=115 Identities=25% Similarity=0.397 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC--
Q 037989 13 PQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCK-- 90 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~-- 90 (432)
+-.-|..||+.||..||++|..|.+||.++|+|.|+|+ .+.|.+.|.+.+..||.+ ++.|.++||||.+++
T Consensus 12 ~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn-----~v~g~esls~ff~~LPsS--~~qi~~lD~Qpv~dqat 84 (139)
T KOG4353|consen 12 ACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGN-----PVSGTESLSEFFNMLPSS--EFQINDLDCQPVHDQAT 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCC-----cchhHHHHHHHHHhCCCc--cccccccccccchhhcc
Confidence 45578999999999999999999999999999999998 999999999999999977 999999999998753
Q ss_pred ----cEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEE----EEeceEEeecC
Q 037989 91 ----GVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFF----VLNDIFRFVDD 134 (432)
Q Consensus 91 ----~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~----V~nDifr~~~~ 134 (432)
+|||+|+|.|++++ ..|.|.|||.|...+..|. |.+|+|||.|-
T Consensus 85 ~~q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 85 GSQTTVLVVVSGTVKFDGNKQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred cccceEEEEEeeeEEEcCCccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 59999999999999 9999999999999987666 99999999863
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=4.2e-15 Score=131.77 Aligned_cols=84 Identities=15% Similarity=0.332 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+||++++++++|+++|++||.|..+.|+.+..+++++|||||+|.+.++++.||+.+ +..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999989999999999999999999999988 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+.+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76554
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.51 E-value=1.9e-13 Score=137.89 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+++|++||.|..++|+.+..+|+++|||||+|.+.+++.+||..+ |..|+||.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7764
No 8
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=7.2e-14 Score=129.34 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar 423 (432)
..++||||||+|.+..+.|+++|++||.|.+..|+.|+.+|+++|||||.|.|.+++.+|++.....|+||+.++..+-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 4689999999999999999999999999999999999999999999999999999999999998889999998888763
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.1e-12 Score=122.06 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+.++|-|.||+.++++.+|+++|.+||.|.++.+.+++.+|.++|||||.|.+.++|.+||..| |+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3447899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccCC
Q 037989 421 QKKGK 425 (432)
Q Consensus 421 ~ar~~ 425 (432)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=4.9e-13 Score=102.33 Aligned_cols=69 Identities=30% Similarity=0.542 Sum_probs=64.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 349 vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
|||+|||.++++++|+++|++||.|..+.+..+ .++..++||||+|.+.++++.|++.+ +..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999888766 66788999999999999999999988 9999999885
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=5.8e-13 Score=134.36 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
..+|||+|||.++++++|+++|++||+|..|.|+.+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|+++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 578999999999999999999999999999999998888999999999999999999999999 9999999999999987
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 83 ~~~ 85 (352)
T TIGR01661 83 SSD 85 (352)
T ss_pred ccc
Confidence 543
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=1.2e-12 Score=131.92 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
.....+++|||+|||+++++++|+++|+.||.|+.|+|+.+..+++++|||||+|.+.+++++||+.+ +..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999999999889999999999999999999999998 99999999999
Q ss_pred EEccCC
Q 037989 420 EQKKGK 425 (432)
Q Consensus 420 e~ar~~ 425 (432)
.++++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998763
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.3e-12 Score=119.87 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..-++|||+-|++++++..|+..|.+||+|+.+.|+.+..+|+++|||||+|++..+++.|.+.. |+.|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999998 99999999999877
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+.+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 7544
No 14
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=5.6e-12 Score=126.90 Aligned_cols=78 Identities=15% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCH--HHHHHHHHhC-CCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESI--SSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~--~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
...+.+||||||++.+++++|+.+|..||.|+.+.|+ +.+| ||||||+|... ..+.+||..+ |..+.||.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 4467999999999999999999999999999999997 3444 89999999987 7899999999 99999999999
Q ss_pred EEccC
Q 037989 420 EQKKG 424 (432)
Q Consensus 420 e~ar~ 424 (432)
+.+|+
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99986
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=8.3e-12 Score=132.90 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+||++++++++|+++|++||.|..|.|..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999888888889999999999999999999999 999999999999988
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
+.+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6443
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=8e-12 Score=96.30 Aligned_cols=69 Identities=26% Similarity=0.513 Sum_probs=62.1
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 349 vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
|||+|||+++++++|+++|..||.|..+.+..... +..+++|||+|.+.+++.+|+..+ +..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999998876655 788999999999999999999999 6999999885
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1e-11 Score=118.62 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+||++.+++++|+++|+.||.|.+|.|..+.. .+|||||+|.+.++++.||...|..|+||.|+|..++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 368999999999999999999999999999999876642 56899999999999999997449999999999999863
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.31 E-value=7e-12 Score=133.47 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+||++++++++|+++|.+||.|..|.|+++..+|+++|||||+|.+.+++++||+.+ |..|+||.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999 999999999998643
No 19
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2e-12 Score=121.47 Aligned_cols=87 Identities=23% Similarity=0.449 Sum_probs=83.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
...++||.|||-.||.+..+.+|..+|-.||.|...+|.+|+.+.+++|||||.|++..+++.||.++ |+.||.++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
..+|+|..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99999864
No 20
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7.6e-12 Score=111.15 Aligned_cols=79 Identities=25% Similarity=0.465 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++||||||+..+++.+|+.+|..||+|..+-| .. .+.|||||+|++..+|..|+..| |..|.|.+|+||..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv--Ar---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWV--AR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEE--ee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34799999999999999999999999999988544 22 36799999999999999999999 99999999999998
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
..+.+
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76555
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.7e-11 Score=118.24 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|+|.|||+...+-||+.+|++||.|..+.|+.. .+ .+||||||.|++.+++++|-.++ |..+-||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4589999999999999999999999999999998654 33 37999999999999999999999 999999999999886
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.|
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.26 E-value=2.8e-11 Score=122.07 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEEc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD--RKVYVEQK 422 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~a 422 (432)
.++|||+|||+++++++|+++|++||.|..+.|+.+..+++.+|||||+|.+.++|++||+.+ +..|.| +.|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 468999999999999999999999999999999888888999999999999999999999999 877755 78999888
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
+.+
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 754
No 23
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.3e-11 Score=104.30 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+||++.+++++|.++|+++|.|+.+-+-+++.+....||+||+|.+.+++..||+.+ +..++.+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35799999999999999999999999999999988888888889999999999999999999999 99999999999876
Q ss_pred c
Q 037989 423 K 423 (432)
Q Consensus 423 r 423 (432)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=1.8e-12 Score=115.70 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=82.1
Q ss_pred CCCcCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 336 RNNIDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 336 ~~~~~~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
..+|+....+...|||||||+..|+.||..+|++||.|..+.++++..+|+++||||+.|++..+.--|+..+ |+.|.|
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 4578888999999999999999999999999999999999999999999999999999999999988899999 999999
Q ss_pred eEEEEEEc
Q 037989 415 RKVYVEQK 422 (432)
Q Consensus 415 r~l~Ve~a 422 (432)
|.|+|...
T Consensus 105 RtirVDHv 112 (219)
T KOG0126|consen 105 RTIRVDHV 112 (219)
T ss_pred eeEEeeec
Confidence 99999754
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=7.9e-11 Score=89.04 Aligned_cols=71 Identities=42% Similarity=0.667 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 348 ~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
+|||+|||.+++..+|+++|.+||.+..+.+..+. +..+++|||+|.+.+.+++|+..+ +..|+|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999998876544 667899999999999999999999 899999998873
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.22 E-value=6.4e-11 Score=111.52 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
..|++|||+||++.+|+++|+++|+.||.|..|.|+.+. ..+|||||+|.+.+++..||...|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeC
Confidence 368999999999999999999999999999999987663 4568999999999999999976699999999999874
No 27
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.2e-11 Score=107.99 Aligned_cols=77 Identities=30% Similarity=0.545 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||.++.+.+|+++|-+||.|..+.+..+ ....+||||+|++..+++.||... |..++|.+|+|++.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4689999999999999999999999999999776433 245799999999999999999999 999999999999997
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 5
No 28
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=1.9e-11 Score=111.14 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.-.+|-|.||.+.++.++|+.+|++||.|-.+.|+.+..++..+|||||-|.+..+|+.|+.+| |.+++|+.|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999 999999999999886
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=1.3e-10 Score=123.06 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+.+++++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.+.+..||..+ |..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 5689999999999999999999999999999999888888999999999999999999999999 999999999999985
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.19 E-value=8.1e-11 Score=126.44 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.+|||||||.++++++|+++|++||.|..|+|.++..+++++|||||+|.+.+++.+||..+ +..|+|+.|+|.|...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 37999999999999999999999999999999888888999999999999999999999999 7779999999998753
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.18 E-value=8.3e-11 Score=126.35 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+||++++++++|+++|++||.|..|+|+.+ .+|+++|||||.|.+.+++.+||..+ +..|+|+.|+|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 35788999999999999999999999999999999777 67889999999999999999999999 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+.+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 7654
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.6e-10 Score=109.66 Aligned_cols=78 Identities=33% Similarity=0.563 Sum_probs=74.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.++|||+||++++++++|+++|.+||.|..+.+..+..+|+.+|||||+|.+.+.+..|+..+ +..|.|+.|.|...+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999999888888999999999999999999999999 899999999999954
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.9e-10 Score=86.47 Aligned_cols=70 Identities=34% Similarity=0.534 Sum_probs=64.2
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 351 VANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 351 V~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
|+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.+.+.+|+..+ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999988776666788999999999999999999999 799999998874
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1.9e-10 Score=120.29 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.++|||+|||..+++++|+++|++||.|..|.+..+..+|+++|||||+|.+.+.+..||..+ |..|+|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 689999999999999999999999999999999888888899999999999999999999999 999999999999965
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.13 E-value=3.2e-10 Score=118.65 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
+.+.++|||+|||..+++++|+++|++||.|..+.|+.+..+|+++|||||+|.+.+++.+||...|..|.|+.|.|...
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44678999999999999999999999999999999999888899999999999999999999986699999999999876
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.1e-10 Score=110.27 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
-.-+||+.|...++-++|++.|.+||.|..++|++|..+++++|||||.|-..+++++||..| |..||+|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 467999999999999999999999999999999999999999999999999999999999999 9999999999999965
Q ss_pred Cc
Q 037989 425 KL 426 (432)
Q Consensus 425 ~~ 426 (432)
|+
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=2.6e-10 Score=121.33 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-CeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr~l~Ve~a 422 (432)
.+++|||+|||+++++++|+++|++||.|..++|+++ .+|+++|||||+|.+.+++++||+.+ +..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4699999999999999999999999999999999888 78899999999999999999999999 77774 788777655
Q ss_pred c
Q 037989 423 K 423 (432)
Q Consensus 423 r 423 (432)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 38
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.6e-10 Score=116.40 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=79.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC------C-Cee
Q 037989 340 DDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS------P-ITF 412 (432)
Q Consensus 340 ~~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~------~-~~i 412 (432)
.+....+.+|||+|||+++++++|.++|++||.|.++.|.++..+++++|.|||.|.+...+++||.+. | +.|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 444567899999999999999999999999999999999999999999999999999999999999975 3 678
Q ss_pred CCeEEEEEEccCCcc
Q 037989 413 GDRKVYVEQKKGKLN 427 (432)
Q Consensus 413 ~Gr~l~Ve~ar~~~~ 427 (432)
+||.|.|..+-+|..
T Consensus 366 ~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRKE 380 (678)
T ss_pred eccEEeeeeccchHH
Confidence 999999998876543
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=7.6e-11 Score=115.02 Aligned_cols=76 Identities=26% Similarity=0.446 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
-|+||||.+.+...++.|+..|..||+|+.+.+.+|..+++++||+||+|+-++.++-|++.+ |.++|||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 589999999999999999999999999999999999999999999999999999999999999 9999999999873
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.4e-10 Score=96.64 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+|..|||.++...+++++|.+.|..||.|+.+.+.+++.+|.-+||++|+|+....+++|+.++ |..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred Ecc
Q 037989 421 QKK 423 (432)
Q Consensus 421 ~ar 423 (432)
|+.
T Consensus 148 w~F 150 (170)
T KOG0130|consen 148 WCF 150 (170)
T ss_pred EEE
Confidence 984
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.1e-10 Score=107.13 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+.++||||+|..++++.-|...|-.||.|+.+.++++-.+++.||||||+|+..+++..||..+ +..+-||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 873
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=1.3e-09 Score=82.82 Aligned_cols=73 Identities=36% Similarity=0.597 Sum_probs=65.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 348 ~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
+|||+|||..+++++|+++|+.||.|..+.+..+... ..+++|||+|.+.+.++.|+..+ +..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999888655433 66899999999999999999999 8889999998863
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.06 E-value=2.9e-10 Score=116.73 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=76.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
+.|||||+|+++++++|..+|+..|.|..+++..|..+|+.+||||++|.+.+.+..|++.+ |..++||+|+|.++..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999998654
Q ss_pred c
Q 037989 426 L 426 (432)
Q Consensus 426 ~ 426 (432)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.4e-09 Score=100.57 Aligned_cols=87 Identities=15% Similarity=0.295 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
+...+.|.|.-||.++|+++|+.+|...|.|..|++++|+.+|++-|||||.|-++.++++||..+ |+.+..+.|+|..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 335678999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCcccC
Q 037989 422 KKGKLNCL 429 (432)
Q Consensus 422 ar~~~~~~ 429 (432)
+|+.....
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 99976644
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=88.23 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...+-|||+|||+++|.+++.++|++||.|..++|-. +...+|-|||.|++..++++|+..+ |..+.++.|.|-..
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578899999999999999999999999999877732 2345899999999999999999999 99999999999765
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 44
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.01 E-value=1.6e-09 Score=115.30 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcC--CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKF--GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~f--G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.++|||+||++++++++|+++|++| |.|.++.++ ++||||+|.+.+++.+||+.+ +..|+|+.|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4789999999999999999999999 999987652 469999999999999999998 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 305 kp~~ 308 (578)
T TIGR01648 305 KPVD 308 (578)
T ss_pred cCCC
Confidence 8753
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=5.4e-10 Score=100.07 Aligned_cols=81 Identities=19% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...+.+||||||+..++++.|+++|-+.|++..++++.++.+...+||||++|.+.++++-|++.+ .+.+-||+|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 346799999999999999999999999999999999999888889999999999999999999999 8889999999998
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 86
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.98 E-value=2e-09 Score=113.61 Aligned_cols=73 Identities=25% Similarity=0.432 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEEEEc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYVEQK 422 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~Ve~a 422 (432)
.+.|||+|||+++++++|+++|++||.|..|.++. .++||||+|++.++|++||+.+ +..|+|+.|+|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 47899999999999999999999999999988752 4589999999999999999863 78999999999988
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 64
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=9.2e-10 Score=112.48 Aligned_cols=83 Identities=27% Similarity=0.441 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.|.+|||++||+.++.++|.++|+.+|+|+.|.+.....++.++|||||.|.-.+++++||... +..|+||.|+|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 4689999999999999999999999999999999888888889999999999999999999999 889999999999987
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
.|.|
T Consensus 84 ~R~r 87 (678)
T KOG0127|consen 84 KRAR 87 (678)
T ss_pred cccc
Confidence 7655
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=2.9e-09 Score=100.00 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++.|||-||.+++++.-|+++|++||.|..++|++|..+.+.+|||||.+.+.+.+.-||..+ |..+++|.|.|.++
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 35899999999999999999999999999999999999998999999999999999999999999 99999999999988
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 51
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.97 E-value=3.5e-09 Score=111.81 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 343 AAKNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 343 ~~~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+++|||+||++ .+++++|+++|+.||.|..++|+.+ .+|||||+|.+.++|..||..+ +..|+|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 6999999999999999999988654 3689999999999999999999 999999999999
Q ss_pred EccC
Q 037989 421 QKKG 424 (432)
Q Consensus 421 ~ar~ 424 (432)
.++.
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8754
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3e-09 Score=100.59 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
.+++++|||||++..+++++|++.|+.||.|.+++|. +-+||+||.|++.+++..||..+ +..|+|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvF------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVF------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEe------cccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3478999999999999999999999999999998884 34699999999999999999999 9999999999999
Q ss_pred ccCCc
Q 037989 422 KKGKL 426 (432)
Q Consensus 422 ar~~~ 426 (432)
.|...
T Consensus 235 GKe~~ 239 (321)
T KOG0148|consen 235 GKEGD 239 (321)
T ss_pred cccCC
Confidence 98643
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.6e-09 Score=106.99 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee-CCeEEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF-GDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i-~Gr~l~Ve~ 421 (432)
..||-||||.||.++.+++|.-+|++.|.|-.++++++..+|.+||||||.|-+.+.+++||+.+ .+.| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999 8877 588888887
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
...+.|
T Consensus 161 Svan~R 166 (506)
T KOG0117|consen 161 SVANCR 166 (506)
T ss_pred eeecce
Confidence 655433
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=3.8e-09 Score=105.44 Aligned_cols=84 Identities=17% Similarity=0.308 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCC--eE
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGD--RK 416 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~G--r~ 416 (432)
..+.+.-++|||-+|..++|.||+.+|++||.|-+|.|+.|+.++.++||+||.|.+.+++.+|+.++ -++|-| +.
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34467789999999999999999999999999999999999999999999999999999999999999 555655 67
Q ss_pred EEEEEccC
Q 037989 417 VYVEQKKG 424 (432)
Q Consensus 417 l~Ve~ar~ 424 (432)
|.|+.+..
T Consensus 109 vqvk~Ad~ 116 (510)
T KOG0144|consen 109 VQVKYADG 116 (510)
T ss_pred eeecccch
Confidence 88888765
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=8e-09 Score=80.05 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred HHHHHHHhh----cCCCeEEEE-EEeeCCC--CCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 360 ADQIKSVFV----KFGPIKANG-IRIRTNQ--LRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 360 e~~L~~~F~----~fG~I~~~~-v~~~~~~--g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
+++|+++|+ +||.|..+. |.+++.+ ++++|||||.|.+.+++.+|++.+ |..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 6677666 889999999999999999999999 99999999976
No 56
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.7e-09 Score=102.00 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCC--eEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGD--RKVYV 419 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~G--r~l~V 419 (432)
.+.++||||-|...-+|+|++++|..||.|.+|.+ +|...|.++||+||.|.+..+++.||..+ ..++-| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-lrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-LRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEE-ecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 37799999999999999999999999999999988 67777899999999999999999999999 444655 67999
Q ss_pred EEccC-CcccCCCC
Q 037989 420 EQKKG-KLNCLRRL 432 (432)
Q Consensus 420 e~ar~-~~~~~rr~ 432 (432)
+++.+ |.|..|||
T Consensus 96 K~ADTdkER~lRRM 109 (371)
T KOG0146|consen 96 KFADTDKERTLRRM 109 (371)
T ss_pred EeccchHHHHHHHH
Confidence 99976 66767764
No 57
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=1.8e-09 Score=106.60 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
+.++|||++|+|+++++.|++.|.+||.|..|.++.+..+++++||+||+|.+.+.+.++|....+.|+|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
|..
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 654
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=3.9e-09 Score=100.71 Aligned_cols=72 Identities=25% Similarity=0.476 Sum_probs=67.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
.++||||||..+++.+|+.+|++||.|.+|+|+ +.||||..++...+..||..| +..|+|..|+|+-++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999984 469999999999999999999 99999999999998876
Q ss_pred c
Q 037989 426 L 426 (432)
Q Consensus 426 ~ 426 (432)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=5.1e-09 Score=104.50 Aligned_cols=90 Identities=23% Similarity=0.422 Sum_probs=84.2
Q ss_pred cCCCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 339 IDDQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 339 ~~~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
.+...++|..+||.+||.+.-+.+|-..|..||.|+..++.+++.++-++|||||.|++..++++||..+ |..|+++++
T Consensus 417 ~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~Krl 496 (510)
T KOG0144|consen 417 GQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRL 496 (510)
T ss_pred ccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccc
Confidence 3445678999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCCccc
Q 037989 418 YVEQKKGKLNC 428 (432)
Q Consensus 418 ~Ve~ar~~~~~ 428 (432)
+|..+|.+.+.
T Consensus 497 kVQlk~~~~np 507 (510)
T KOG0144|consen 497 KVQLKRDRNNP 507 (510)
T ss_pred eEEeeeccCCC
Confidence 99999987654
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.4e-09 Score=100.31 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
...|||..|.+-++.++|+-+|+.||.|..|.|+.+..+|.+.+||||+|++.+++..|.-+| ...|+.|+|.|.+...
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 367999999999999999999999999999999999999999999999999999999999999 9999999999988754
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=91.51 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKAN-GIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~-~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+.++|||||.+.+++..|.+.|+.||.|... .|+.+.++|.++|||||.|.+.+...+||..+ +..++.|++.|..+
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 46899999999999999999999999998653 57777888999999999999999999999999 99999999999988
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
..+.
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 6543
No 62
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=3.3e-08 Score=72.89 Aligned_cols=55 Identities=31% Similarity=0.471 Sum_probs=47.2
Q ss_pred HHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 363 IKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 363 L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
|.++|++||.|..+.+.... ++++||+|.+.++|..|++.+ +..|+|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999987763221 589999999999999999998 99999999999875
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.76 E-value=8.5e-09 Score=105.86 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||||.+++++.+|+.+|+.||.|..+.+.++..+|+.+||||++|.+.+.+.+|+..+ |+.|.||.|+|....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 344999999999999999999999999999999999889999999999999999999999999 999999999987553
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.75 E-value=2.9e-08 Score=99.27 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHh-hcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVF-VKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F-~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+.+||.|||+++.+.+|+++| ++-|.|.+|.+..|. .|+.+|||.|+|++++.+++|++.+ .+.++||.|.|++.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45779999999999999999999 578999999997774 5899999999999999999999999 99999999999988
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
.-
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 64
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.4e-08 Score=100.17 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
-..|||+||+.++|++.|+++|.+||.|.+++.+ +.||||.|.+++++.+|++.+ +..|+|..|.|..+++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 4789999999999999999999999999987542 569999999999999999999 9999999999999987
No 66
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.72 E-value=1e-07 Score=101.14 Aligned_cols=76 Identities=13% Similarity=0.351 Sum_probs=60.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcC------------CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKF------------GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~f------------G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
......++|||||||+++++++|+++|.+| +.|..+.+ ++.+|||||+|.+.+.|..||...
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 334567999999999999999999999875 23333222 356799999999999999999533
Q ss_pred CCeeCCeEEEEEEc
Q 037989 409 PITFGDRKVYVEQK 422 (432)
Q Consensus 409 ~~~i~Gr~l~Ve~a 422 (432)
|+.|.|+.|+|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99999999998643
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=2.5e-08 Score=105.11 Aligned_cols=79 Identities=24% Similarity=0.433 Sum_probs=73.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
+++|+|+|||+.++-.+++.+|..||.|+.|+|+.....+.++|||||+|-++..+.+|+.++ ...+-||+|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 789999999999999999999999999999999877666778999999999999999999999 7779999999999975
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=2.6e-07 Score=94.99 Aligned_cols=83 Identities=17% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..-++.|||.+|+..+...+|+.+|++||.|...+|+....+...+|||||.+.+...+.+||..| ...|.||.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345799999999999999999999999999999998777666667999999999999999999999 8889999999998
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8743
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.1e-07 Score=93.19 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
....+|||..+.++.++.||+..|+-||+|+.|.+-.....+.++||||++|.+..+...||..+ -+.+||..|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 35689999999999999999999999999999999777777788999999999999999999999 67799999999887
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
-+.+
T Consensus 288 vTPP 291 (544)
T KOG0124|consen 288 VTPP 291 (544)
T ss_pred cCCC
Confidence 6543
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.6e-07 Score=95.55 Aligned_cols=74 Identities=26% Similarity=0.444 Sum_probs=68.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 349 IFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 349 vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
|||+||+.+++...|.++|+.||.|..|++..+.+ | .+|| ||+|++.+.+++||..+ |..++|+.|.|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 99999999999999999999999999999977764 3 8999 99999999999999999 99999999999776543
No 71
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=4.5e-07 Score=83.05 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKF-GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~f-G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....-+||+.+|+.+.+.++..+|++| |.+.+.++.+...+|.++|||||+|++.+.|.-|-+.| +..|+|+.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999998 66776666666779999999999999999999999999 8889999888875
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
--+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 543
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=2.3e-07 Score=90.77 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve~a 422 (432)
...+||||||...+++.+|+++|-+||.|+.+.+..+ +++|||+|.+..+++.|...+ ...|+|++|.|.|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 5689999999999999999999999999999887533 458999999999999998888 66699999999999
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.54 E-value=1.1e-07 Score=94.14 Aligned_cols=83 Identities=30% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
...+|||++||.++++++|+++|.+||.|..+.++++..+.+.+||+||.|.+.+++..++...-+.|+|+.+.|..+-+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45799999999999999999999999999999999999999999999999999999999999889999999999999877
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 543
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.51 E-value=3.5e-07 Score=84.98 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=71.2
Q ss_pred CEEEEcCCCCCCcHHHHHH----HhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 347 PVIFVANLPMDVTADQIKS----VFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~----~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
.+|||.||+..+..++|++ +|++||.|..+.. ..+.+.+|-|||.|.+.+.+-.|++++ |..|-|+.++|..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a---~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISA---FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEe---cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999988 9999999987544 245678999999999999999999999 9999999999999
Q ss_pred ccCCcccCC
Q 037989 422 KKGKLNCLR 430 (432)
Q Consensus 422 ar~~~~~~r 430 (432)
++.+.....
T Consensus 87 A~s~sdii~ 95 (221)
T KOG4206|consen 87 AKSDSDIIA 95 (221)
T ss_pred ccCccchhh
Confidence 987765443
No 75
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=98.46 E-value=2.3e-07 Score=82.23 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHc-----cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC-CCcceEEEeeeeeeee
Q 037989 14 QLVGNSFVEQYFKALH-----QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD-YQNYQTEILTVDAQAS 87 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~-~~~~~~~I~s~d~q~s 87 (432)
.++.+-||+.||..|| +-...|..||..+|.++|+|. .+.+..+-.++|.+++ .+ +|.+.++|||..
T Consensus 4 tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~-----Pi~~~~~F~~~w~~~pv~T--qH~L~s~D~H~I 76 (166)
T PF10429_consen 4 TQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGT-----PIAQPTAFQQTWQQQPVQT--QHQLTSFDCHVI 76 (166)
T ss_dssp CCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTE-----EES-HHHHHHHHHCCS--E--EEEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCc-----cCCCHHHHHHHHHhCccce--eeeeeeeeeeEe
Confidence 3467889999999999 334588999999999999998 9999999999999999 45 999999999999
Q ss_pred CC-CcEEEEEEEEEeeCC-CCceeEEEEEeeee
Q 037989 88 YC-KGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ 118 (432)
Q Consensus 88 ~~-~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~ 118 (432)
++ |+++|.|+|.|.+++ .+-+--|...|...
T Consensus 77 PGsgt~i~N~n~KVRFDEsGrdk~G~~a~l~~~ 109 (166)
T PF10429_consen 77 PGSGTFIINVNCKVRFDESGRDKLGEDADLPQP 109 (166)
T ss_dssp TTTTEEEEEEEEEEEEB-SSB-TTS-B--TTS-
T ss_pred CCCCeEEEeeeEEEEecCCCCCCCCCceeeccc
Confidence 86 679999999999988 55556677776553
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.45 E-value=4e-07 Score=96.80 Aligned_cols=74 Identities=20% Similarity=0.429 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++||||+|+.++++.||..+|+.||.|.++.++ .+++||||.+....+|.+||.++ .+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4899999999999999999999999999997663 36789999999999999999999 8899999999999976
Q ss_pred C
Q 037989 425 K 425 (432)
Q Consensus 425 ~ 425 (432)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=5e-07 Score=95.45 Aligned_cols=78 Identities=28% Similarity=0.398 Sum_probs=68.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC---CCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL---RPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g---~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
.++|||+||+++++.++|+..|.+.|.|..+.|....+.. .+.|||||+|.+.+++++|++.+ |..|+|+.|.|+.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3459999999999999999999999999998886655432 24599999999999999999999 8999999999998
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 76
No 78
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.44 E-value=3.6e-06 Score=69.81 Aligned_cols=114 Identities=27% Similarity=0.412 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCC--CcceEEEeeeeeeeeCC-CcEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDY--QNYQTEILTVDAQASYC-KGVL 93 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~--~~~~~~I~s~d~q~s~~-~~vl 93 (432)
..|+.+||..|+ .+++.|..||.+.+.+.+.+.++......|.++|.+.+..+.. ...++.+.+++++...+ .+.+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 7888999999999999887632112366799999999998863 34455578888888654 3466
Q ss_pred EEEEEEEeeCC----CCceeEEEEEeeeeCCeEEEEeceEEe
Q 037989 94 VLVTGYMSGKT----GKRRFSQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 94 V~V~G~l~~~~----~~~~F~qtF~L~p~~~~y~V~nDifr~ 131 (432)
+.+.|.+.... ..+.|.+.|.+...+++|.|.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 67777776553 567789999999999999999999986
No 79
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.40 E-value=3.1e-07 Score=87.90 Aligned_cols=74 Identities=20% Similarity=0.445 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++|+||||.+.++..+|+..|.+||++..|+|. ++|+||.|+-.+++..|++.+ +..|.|++++|+....
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 5789999999999999999999999999999983 579999999999999999999 9999999999999876
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
|.+
T Consensus 150 rlr 152 (346)
T KOG0109|consen 150 RLR 152 (346)
T ss_pred ccc
Confidence 654
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.36 E-value=5.7e-06 Score=76.70 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC-CCccEEEEEeCCHHHHHHHHHhC-CCeeC---CeEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL-RPNCFSFVEFESISSMQNALKAS-PITFG---DRKVY 418 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g-~~~gfaFVeF~~~~~a~~Al~~~-~~~i~---Gr~l~ 418 (432)
..-++|||.+||.++...+|..+|+.|-....+.+.+....+ ..+-+||+.|.+...+.+|+.++ |+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 356999999999999999999999999766666554432221 23579999999999999999999 99986 57899
Q ss_pred EEEccCCcccCCC
Q 037989 419 VEQKKGKLNCLRR 431 (432)
Q Consensus 419 Ve~ar~~~~~~rr 431 (432)
|+.+|.+.+..||
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9999987665543
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.35 E-value=7.6e-07 Score=84.88 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
+.+...+||+|+.+.++.++++.+|+.||.|..+.|..+...|+++||+||+|.+.+.+..+|...+..|.|+.+.|..+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 45678999999999999999999999999999999999999989999999999999999999994499999999999998
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
|.+.-
T Consensus 178 r~~~p 182 (231)
T KOG4209|consen 178 RTNVP 182 (231)
T ss_pred eeecC
Confidence 86533
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=1.1e-06 Score=82.17 Aligned_cols=70 Identities=24% Similarity=0.513 Sum_probs=64.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
..+|||+|++.+.+.+|+.+|..||.|..+.+ ..||+||+|++..++..|+.-+ +..|+|.++.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 46999999999999999999999999998765 4589999999999999999999 9999998899999985
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.22 E-value=1e-06 Score=82.99 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+..+||.|.|.-+++++.|-+.|++|-.....+++.++.+|+++|||||.|.+..++-+|++.+ |.++|.|.|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3447799999999999999999999999988888889899999999999999999999999999999 999999998876
Q ss_pred EccCC
Q 037989 421 QKKGK 425 (432)
Q Consensus 421 ~ar~~ 425 (432)
....+
T Consensus 266 kS~wk 270 (290)
T KOG0226|consen 266 KSEWK 270 (290)
T ss_pred hhhHH
Confidence 55443
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.21 E-value=4.7e-06 Score=81.66 Aligned_cols=80 Identities=26% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKA--------NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
..+..|||.|||.++|.+++.++|++||.|.+ |++ .+.+.|+.+|=|.+.|...+++.-|++.+ +..|+|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~Kl-Yrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKL-YRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEE-EecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 35678999999999999999999999999864 444 44556888999999999999999999999 999999
Q ss_pred eEEEEEEccC
Q 037989 415 RKVYVEQKKG 424 (432)
Q Consensus 415 r~l~Ve~ar~ 424 (432)
+.|+|+.++-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999999874
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.20 E-value=5.2e-06 Score=87.74 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeE
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTN---QLRPNCFSFVEFESISSMQNALKAS-PITFGDRK 416 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~---~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~ 416 (432)
+.++..+.+||+||++.+++..|...|+.||+|..++|++.+. +.+.+.||||-|.+..++++|++.+ |+.+.++.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3356779999999999999999999999999999998877543 3456788999999999999999999 99999999
Q ss_pred EEEEEccC
Q 037989 417 VYVEQKKG 424 (432)
Q Consensus 417 l~Ve~ar~ 424 (432)
+++.|.++
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999864
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.19 E-value=3e-06 Score=85.06 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....|+|||+|||+++|++.|++-|..||.++...|+ ..|+.+| .|.|.+++++++|+..+ +..++||.|.|..
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3467999999999999999999999999999998883 2355555 89999999999999999 9999999999975
No 87
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1e-05 Score=82.55 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=66.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
.++||| +++++.+|.++|+++|++..++|-++. + +-|||||.|.++.++.+||..+ ...|.|+.|+|-|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 999999999999999999999987776 4 9999999999999999999999 66699999999988654
Q ss_pred c
Q 037989 426 L 426 (432)
Q Consensus 426 ~ 426 (432)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 88
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.02 E-value=2.2e-05 Score=75.04 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
...+|+|.||++.+...||+++|..||.++.+-+-++. .|.+.|.|-|.|...+++..+++.+ ++.++|+.+.+...-
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34889999999999999999999999988887665553 4788899999999999999999999 999999999998775
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.95 E-value=6e-05 Score=62.12 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC----CeEEEE
Q 037989 347 PVIFVANLPMDVTADQIKSVFVK--FGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG----DRKVYV 419 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~--fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~----Gr~l~V 419 (432)
++|.|+|||...+.++|.+++.. .|....+.+++|..++.+.|||||.|.+.+.+.+-.+.. |..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998854 377777889999888889999999999999999988887 66654 466777
Q ss_pred EEccC
Q 037989 420 EQKKG 424 (432)
Q Consensus 420 e~ar~ 424 (432)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77763
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.81 E-value=4.9e-05 Score=77.78 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar 423 (432)
...-|-+++|||++|+++|.++|+.++ |..+ .+...+|+..|-|||+|.+.+++++||++....++.|.|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~--~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL--EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE--EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 567788899999999999999999996 5553 344456889999999999999999999999999999999997663
No 91
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=2.3e-05 Score=81.20 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=61.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
...+|+|-|||..++..+|+++|+.||.|+.+.. +-..+|..||+|-|..++++|++++ +..|.|++|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4588999999999999999999999999998432 2245789999999999999999999 8999998887
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.64 E-value=2.5e-05 Score=72.32 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+||...++++.|.++|-+-|+|.+++|..... +..+ ||||.|.+..++.-|++.+ |..+-++.+.|...-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 568999999999999999999999999998877744433 3444 9999999999999999999 998888887776654
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 93
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.60 E-value=0.00031 Score=67.75 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHHHHcc--CcccccccccCCCe-eecCCCCCc-cceeccHHHHHHHHhcCCCCcce---EEEee--
Q 037989 11 VDPQLVGNSFVEQYFKALHQ--YPEHLHRFYQDSSF-LSRPGPDGV-MTSITTMKEINDQILSLDYQNYQ---TEILT-- 81 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~S~-l~~~~~~g~-~~~~~g~~~I~~~~~sl~~~~~~---~~I~s-- 81 (432)
.+...+|..|.+|||.+|+. +-=...-||.|.+. |.....++. ...+.|.+.+..+|.+|-.+..- ..+.+
T Consensus 125 ~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G 204 (262)
T PF15008_consen 125 YPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSDG 204 (262)
T ss_pred CCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCCC
Confidence 45788999999999999998 33366789988763 443333344 34448999999999998644321 12333
Q ss_pred eeeeeeCCCcEEEEEEEEEeeCC-CCceeEEEEEeeeeC---CeEEEEeceEEeec
Q 037989 82 VDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQE---NGFFVLNDIFRFVD 133 (432)
Q Consensus 82 ~d~q~s~~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~---~~y~V~nDifr~~~ 133 (432)
+.|..++.|-|+|.|.|+|-.++ --=-|-|.|=|...+ |.|.|.+=-+|+.+
T Consensus 205 ~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 205 VKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred cceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 66777788889999999998777 455699999998654 79999887777654
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.37 E-value=0.00014 Score=75.84 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..+++||+|||...++.++++++..||.++...+..+..+|.++||+|.+|-+......|+..+ |..++++.|.|..+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 5689999999999999999999999999999988888888999999999999999999999999 999999999998775
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 4
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.32 E-value=0.00054 Score=57.45 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC------CCeeCCeEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS------PITFGDRKVYV 419 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~------~~~i~Gr~l~V 419 (432)
|+.|+|.++...++.++|+++|++||.|..+.+ . .+..-|||.|.+.+.++.++.++ ++.|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~----~--~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDF----S--RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--------TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEe----c--CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 577999999999999999999999999998766 2 23457899999999999998876 23456654444
Q ss_pred E
Q 037989 420 E 420 (432)
Q Consensus 420 e 420 (432)
+
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.30 E-value=0.0012 Score=69.36 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHccCcc-cccccccCCCeeec------CCC-CCc-----------------------cceeccH
Q 037989 12 DPQLVGNSFVEQYFKALHQYPE-HLHRFYQDSSFLSR------PGP-DGV-----------------------MTSITTM 60 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~p~-~l~~fY~~~S~l~~------~~~-~g~-----------------------~~~~~g~ 60 (432)
...++-.+|+++||..+|+++. .+...|+|+|+++. ... +.+ .+...|.
T Consensus 336 ~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~ 415 (585)
T KOG3763|consen 336 ELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGA 415 (585)
T ss_pred HHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccc
Confidence 3566888999999999997666 77777889998753 110 100 2566788
Q ss_pred HHHHHHHhcCCCCcceEEEee----eeeeeeCCCcEEEEEEEEEeeCC-----CCce---eEEEEEeeeeC-CeEEEEec
Q 037989 61 KEINDQILSLDYQNYQTEILT----VDAQASYCKGVLVLVTGYMSGKT-----GKRR---FSQSFFLAPQE-NGFFVLND 127 (432)
Q Consensus 61 ~~I~~~~~sl~~~~~~~~I~s----~d~q~s~~~~vlV~V~G~l~~~~-----~~~~---F~qtF~L~p~~-~~y~V~nD 127 (432)
..|...|..||-+ .|...+ +-.|. ..++.+.|.|.+.-.+ .-+. |+.||+..|.+ .+..|.||
T Consensus 416 ~~Iv~aLs~LPkT--~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d 491 (585)
T KOG3763|consen 416 CDIVVALSALPKT--QHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVND 491 (585)
T ss_pred hHHHHHHHhCccc--hhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEec
Confidence 8999999999944 666543 33333 4679999999997544 3344 99999999998 58999999
Q ss_pred eEEeecC
Q 037989 128 IFRFVDD 134 (432)
Q Consensus 128 ifr~~~~ 134 (432)
.+-.-..
T Consensus 492 ~Lfi~~~ 498 (585)
T KOG3763|consen 492 QLFIASA 498 (585)
T ss_pred eeEEeec
Confidence 8855443
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.30 E-value=0.00057 Score=70.16 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEE-EeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGI-RIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v-~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....|-+++||+.|+++||.++|...-.+. ..| .+....++..|-|||.|++.+.++.||......|+.|-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~-~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVP-DGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccc-cceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 357799999999999999999998874333 333 33345677889999999999999999999888899998888665
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.08 E-value=0.00037 Score=68.68 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=71.9
Q ss_pred CCEEE-EcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 346 NPVIF-VANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vf-V~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++| |+||+..++..+|+.+|..+|.|..+++..+..++..+||+|+.|......+.++......++|+.+.+++.++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 44555 99999999999999999999999999998888889999999999999998888888656678999999998877
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 264 ~~~ 266 (285)
T KOG4210|consen 264 RPK 266 (285)
T ss_pred Ccc
Confidence 643
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.03 E-value=0.00026 Score=73.45 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQ 421 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ 421 (432)
.+.+.+++|+.-|...++..+|.++|+.+|.|..+.++.++++++++|.+||+|.+.+++..||...|..+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 34578999999999999999999999999999999999999999999999999999999999996669999999988875
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
.
T Consensus 255 s 255 (549)
T KOG0147|consen 255 S 255 (549)
T ss_pred c
Confidence 4
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.94 E-value=0.00087 Score=62.45 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=51.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
-.++||.||..++++++|+.+|+.|......+| + .+ .+.|.+|++|++.+.+..|+..+ |..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~--~-~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKI--R-AR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE--e-cC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 468999999999999999999999977665444 2 22 35688999999999999998888 6665
No 101
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.89 E-value=0.011 Score=49.35 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~~vlV 94 (432)
..++++|++.+. .+-+.|..+|.++..+...+.+ ..+.|.++|.+++... .+..+.+.+..+..+.. ++.+++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~~ 77 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPG---EIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS-GDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSS---SEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCC---ceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC-CCEEEE
Confidence 467889999887 5557999999988777665431 2667999998888762 23577888888888763 444555
Q ss_pred EEEEEEee--CC--CCceeEEEEEeeeeCCeEEEEeceEE
Q 037989 95 LVTGYMSG--KT--GKRRFSQSFFLAPQENGFFVLNDIFR 130 (432)
Q Consensus 95 ~V~G~l~~--~~--~~~~F~qtF~L~p~~~~y~V~nDifr 130 (432)
...+.+.. ++ ....+..||+|...+++|.|...-+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S 117 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEec
Confidence 55665543 33 46678899999999999999887654
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0036 Score=64.80 Aligned_cols=63 Identities=33% Similarity=0.522 Sum_probs=50.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC---CCCcc---EEEEEeCCHHHHHHHHHhC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ---LRPNC---FSFVEFESISSMQNALKAS 408 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~---g~~~g---faFVeF~~~~~a~~Al~~~ 408 (432)
-.++||||+||++++++.|...|..||.++ +.+..+... ...+| |+|+.|++..+++.-|.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 468999999999999999999999999986 455432221 12356 9999999999999888875
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.67 E-value=0.0014 Score=64.54 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=60.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe--EEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPI--KANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I--~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
+...+.+|||||-|++|++||.+.+...|-- ..+++.-.+..|+++|||+|...+..+++..++.+ ...|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3456899999999999999999988766532 22333334456899999999999999999999999 77899865444
No 104
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.0013 Score=61.88 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
-.+.++|.||+..+.+.+|.+.|.++|.+..... ..+++||+|...+++.+||..+ +..+.|+.|.+..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 4689999999999999999999999999843211 4678999999999999999999 9999999999843
No 105
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.57 E-value=0.009 Score=47.63 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 347 PVIFVANLPMDVTADQ----IKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~----L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..|||.|||.+.+... |++++..||.-. +.| ..+-|++.|.+.+.|.+|.+.+ |-..-|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV-l~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV-LSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E-EE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE-EEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999988865 566777887532 122 2467999999999999999999 8888899999988
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 73
No 106
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.56 E-value=0.0028 Score=62.94 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKA--------NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG 413 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~ 413 (432)
.....+|||-+|+..++..+|..+|.++|.|+. +.|-+++.++..++-|.|.|++...++.||.-+ +..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345688999999999999999999999999864 234445567888999999999999999999999 99999
Q ss_pred CeEEEEEEccCCc
Q 037989 414 DRKVYVEQKKGKL 426 (432)
Q Consensus 414 Gr~l~Ve~ar~~~ 426 (432)
|..|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998776554
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0072 Score=62.65 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=60.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhh-cCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCee
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFV-KFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~-~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i 412 (432)
..++||||+||.-++.++|-.+|. -||.|..++|-+|..-+..+|-|-|.|.+..+.-+||.+.-+.|
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 468999999999999999999997 79999999998886656789999999999999999999874433
No 108
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.49 E-value=0.068 Score=45.06 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeee-cCCCCCccceeccHHHHHHHHhcCC---CCcceEEEeeeeeeeeCCCc
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLS-RPGPDGVMTSITTMKEINDQILSLD---YQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~-~~~~~g~~~~~~g~~~I~~~~~sl~---~~~~~~~I~s~d~q~s~~~~ 91 (432)
-...+..|+..++ .+++.|..+|.+++.+. ..|. ...|.++|.+.+..+- ....++.+.....+-..++.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQ-----VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCC-----eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCE
Confidence 4577889999998 48889999999998876 4443 6789999999887531 22334555544444333333
Q ss_pred EEEEEEEEEeeCC--C-Cc--eeEEEEEeeeeCCeEEEEeceEE
Q 037989 92 VLVLVTGYMSGKT--G-KR--RFSQSFFLAPQENGFFVLNDIFR 130 (432)
Q Consensus 92 vlV~V~G~l~~~~--~-~~--~F~qtF~L~p~~~~y~V~nDifr 130 (432)
.++.....+...+ . .. ...-+|++...+++|.|..|-+.
T Consensus 81 A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~s 124 (128)
T TIGR02246 81 AIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHNT 124 (128)
T ss_pred EEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccCC
Confidence 3333333333332 1 11 23346667778899999988653
No 109
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.22 E-value=0.01 Score=58.38 Aligned_cols=81 Identities=12% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCCCEEEEcCCCCCCcHHH----H--HHHhhcCCCeEEEEEEeeCCCC-CCcc-E-EEEEeCCHHHHHHHHHhC-CCeeC
Q 037989 344 AKNPVIFVANLPMDVTADQ----I--KSVFVKFGPIKANGIRIRTNQL-RPNC-F-SFVEFESISSMQNALKAS-PITFG 413 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~----L--~~~F~~fG~I~~~~v~~~~~~g-~~~g-f-aFVeF~~~~~a~~Al~~~-~~~i~ 413 (432)
.+..-+||-+|++.+-.++ | .++|++||.|+.+.|-.+.... ...+ + .||.|...+++.++|... |..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3557789999999887776 2 5689999999987664332111 1122 2 499999999999999999 99999
Q ss_pred CeEEEEEEccC
Q 037989 414 DRKVYVEQKKG 424 (432)
Q Consensus 414 Gr~l~Ve~ar~ 424 (432)
||.|+......
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99998776543
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.17 E-value=0.028 Score=56.88 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=64.9
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 346 NPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 346 ~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+.|.|.||... +|.+-|..+|+-||.|.+++|...+ +.-|.|.|.+...++-|+..+ |+.|.|++|+|...|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688889998765 8999999999999999999985432 256999999999999999999 999999999999887
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 111
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=96.09 E-value=0.058 Score=43.55 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=69.1
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVLVLVT 97 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vlV~V~ 97 (432)
+..++|...+. .+.+.|.++|.++..+...+. ...|.+++.+.+..-.......++.....+.. ++..++...
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~ 76 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGG-----TILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTS-----EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCC-----CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEE
Confidence 46778888876 558899999999987776654 55699999999987444445666667777777 554555555
Q ss_pred EEEeeCC-C---CceeEEEEEeeeeCCeEEE
Q 037989 98 GYMSGKT-G---KRRFSQSFFLAPQENGFFV 124 (432)
Q Consensus 98 G~l~~~~-~---~~~F~qtF~L~p~~~~y~V 124 (432)
..++... . ...+..+.++...+++|.|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 77 WTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 5555443 2 3445566666677888875
No 112
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.99 E-value=0.027 Score=52.86 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-CeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr~l~Ve~a 422 (432)
....+|+.|||..++.+.|..+|.+|+..+.+++. .. .++.+||+|.+...+..|...+ +..|- ...+.|..+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i-~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLI-PP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEec-cC----CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 45789999999999999999999999999887662 21 3578999999998888888888 77776 666776654
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.99 E-value=0.0038 Score=59.37 Aligned_cols=71 Identities=14% Similarity=0.269 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC--------CCC----ccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ--------LRP----NCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~--------g~~----~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
.-.||++|||+.+...-|+++|..||.|-++.+...... |.+ ..-|+|+|.+...|+++...+ +..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999998876443222 222 233889999999999998888 8889
Q ss_pred CCeE
Q 037989 413 GDRK 416 (432)
Q Consensus 413 ~Gr~ 416 (432)
||++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 114
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.031 Score=58.56 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=61.9
Q ss_pred CCCCEEEEcCCCCCCcH------HHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-Ce
Q 037989 344 AKNPVIFVANLPMDVTA------DQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DR 415 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte------~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr 415 (432)
.....|+|.|+|---.. .-|..+|+++|+|....++.+...| .+||.|++|.+..+|+.|++.+ |+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45678999999875333 2367789999999998887776654 8999999999999999999999 88876 46
Q ss_pred EEEEEE
Q 037989 416 KVYVEQ 421 (432)
Q Consensus 416 ~l~Ve~ 421 (432)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777653
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.83 E-value=0.027 Score=60.35 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=65.8
Q ss_pred CCC-EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 345 KNP-VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~-~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
.|+ .|-+.|+|++++-+||.++|..|-.+..--++.+...|...|-+.|-|++.+.+.+|...+ +..|+.|.+++..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345 7889999999999999999999966654444466778899999999999999999999999 8999999888764
No 116
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.74 E-value=0.031 Score=40.80 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=40.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHH
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNAL 405 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al 405 (432)
+.|-|.|.+.+..+ .+..+|..||.|....+. ....+.||.|.+..++++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 45778888877654 456699999999987662 24568999999999999885
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.63 E-value=0.054 Score=44.96 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeC-------CCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCe-E
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRT-------NQLRPNCFSFVEFESISSMQNALKASPITFGDR-K 416 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~-------~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr-~ 416 (432)
..+.|.|=+.|.. ....+.+.|++||.|.+..-.++. .......+-.|.|.++.+|++||...|..|+|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3566788888888 456688899999999764311111 011345789999999999999999999999885 4
Q ss_pred EEEEEcc
Q 037989 417 VYVEQKK 423 (432)
Q Consensus 417 l~Ve~ar 423 (432)
+.|...+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566654
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.50 E-value=0.0091 Score=60.22 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~Ve~ 421 (432)
..+.|.+||||+++++.+|..++.+||.|..+.+. +++.-+|++|.+.+++-..+... .-.+.|+.|.|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~l------kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLML------KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeee------ccchhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 45789999999999999999999999999886552 23447999999998877744443 4557888888876
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
.
T Consensus 101 s 101 (492)
T KOG1190|consen 101 S 101 (492)
T ss_pred h
Confidence 5
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.36 E-value=0.011 Score=59.18 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=53.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCe---EEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPI---KANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVY 418 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I---~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~ 418 (432)
.-.|-.++||+++++.++..+|..--+| ....+.+.+..|+..|-|||.|...+.++.||.+....||-|.|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHH
Confidence 3457788999999999999999632122 112233555568889999999999999999999875566655443
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.25 E-value=0.072 Score=47.05 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=43.4
Q ss_pred HHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccCC
Q 037989 362 QIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKGK 425 (432)
Q Consensus 362 ~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~~ 425 (432)
+|.+.|..||.+.-+++. .+.-+|.|.+-.+|.+|+...|..++|+.|+|+.+.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 577788999988765542 13479999999999999999999999999999998764
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.16 E-value=0.021 Score=62.73 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD--RKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~ 421 (432)
..+.+|+++|..++....|..+|..||.|..+.+ + ++.-|++|.|++...++.|+..+ |.-||| ++++|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--R----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--c----cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 4688999999999999999999999999998654 2 34579999999999999999999 999987 7888888
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
+..
T Consensus 528 a~~ 530 (975)
T KOG0112|consen 528 ASP 530 (975)
T ss_pred ccC
Confidence 764
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.07 E-value=0.051 Score=58.30 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 341 DQAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 341 ~~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
....-+..|||..||..+++.++.++|+....|...-.+.+..+++-++-|||.|...+....|+.-. .+++|.|.|+|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 44567899999999999999999999988777766322345556778899999999977766666555 78889999999
Q ss_pred EEc
Q 037989 420 EQK 422 (432)
Q Consensus 420 e~a 422 (432)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 743
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.91 E-value=0.028 Score=56.39 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=60.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCC-eEE--EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGP-IKA--NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~-I~~--~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...|-+++||+.++.++|..+|+.|.. |.. +.+ +-+..|+..|-|||+|.+.+.+..|.... ...+.+|.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHm-v~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHM-VLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEE-EEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999999999999999999854 332 344 44567899999999999999999998887 4445588888765
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
.
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.82 E-value=0.13 Score=47.05 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
.+.|.|.+||...+++||+++..+-|.++...+..+ |.+.|+|-..++++-||..+
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhh
Confidence 478999999999999999999999999998777433 58999999999999999998
No 125
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=94.64 E-value=0.48 Score=39.87 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhc-----CCCCcceEEEeeeeeeeeCCCc
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILS-----LDYQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~s-----l~~~~~~~~I~s~d~q~s~~~~ 91 (432)
.+-|+.|++.|+ .+.+.|.+.++++..|.+.+ +|. ......++-.+.+.+ .....|..+|.++|... +.
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGK-LRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---DV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTE-EEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET---TE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCc-eEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC---CE
Confidence 445788998888 67779999999999877655 333 244456677777765 34567888888887663 43
Q ss_pred EEEEEEEEEeeCCCCceeEEEEEeeeeCCeEEEEeceEE
Q 037989 92 VLVLVTGYMSGKTGKRRFSQSFFLAPQENGFFVLNDIFR 130 (432)
Q Consensus 92 vlV~V~G~l~~~~~~~~F~qtF~L~p~~~~y~V~nDifr 130 (432)
-++.|.-.+. .+.|...|.|...+++|.|.|=+|.
T Consensus 82 A~a~v~~~~~----~~~~~d~~~L~K~dg~WkIv~k~~~ 116 (116)
T PF12893_consen 82 ASAKVEYEFP----GFWFVDYFTLVKTDGGWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEEEE----TEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEC----CCceEEEEEEEEECCEEEEEEEecC
Confidence 4444444443 4589999999999999999998874
No 126
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.63 E-value=0.1 Score=55.02 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCCeEEEEEEeeCC---CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 361 DQIKSVFVKFGPIKANGIRIRTN---QLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 361 ~~L~~~F~~fG~I~~~~v~~~~~---~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
++++..+.+||.|..|.|..... ..-+.|..||+|.+.+++++|.++| |..|+||.+.....
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 45666788999999998866622 2234577899999999999999999 99999998877654
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.46 E-value=0.14 Score=50.86 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCC----CCc-------HHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 345 KNPVIFVANLPM----DVT-------ADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~----~vt-------e~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
..++|.++||=. ..+ .++|++.-.+||.+..+.| .++ .+.|.+-|.|.+.+.+..||+.| |..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-ecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 458899998732 233 2456666789999998766 332 35688999999999999999999 9999
Q ss_pred CCeEEEEEEccCC
Q 037989 413 GDRKVYVEQKKGK 425 (432)
Q Consensus 413 ~Gr~l~Ve~ar~~ 425 (432)
+||+|.-+....+
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999998876543
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.25 E-value=0.039 Score=52.69 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-----CCeeCCeEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-----PITFGDRKVYVE 420 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-----~~~i~Gr~l~Ve 420 (432)
...|||.||...++-+.|+..|+.||+|....+.++ +.++..+-++|.|.....+.+|+... +....++..-|+
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 377999999999999999999999999988666555 45677888999999988888887765 344556665554
Q ss_pred E
Q 037989 421 Q 421 (432)
Q Consensus 421 ~ 421 (432)
.
T Consensus 110 P 110 (275)
T KOG0115|consen 110 P 110 (275)
T ss_pred h
Confidence 3
No 129
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.83 E-value=0.056 Score=55.04 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=54.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee---C--CCCCC--------ccEEEEEeCCHHHHHHHHHhC
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIR---T--NQLRP--------NCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~---~--~~g~~--------~gfaFVeF~~~~~a~~Al~~~ 408 (432)
.+..+++|.+-|||.+-.-+-|.++|+.||.|+.++|-.. . .++.. +-+|||+|+..+.+.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999888999999999999999887332 1 12222 457999999999999998877
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.64 E-value=0.048 Score=55.36 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEEEEccC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGDRKVYVEQKKG 424 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve~ar~ 424 (432)
.++|++||.+.++..+|+.+|..--.-....+++ ..||+||+..+...+.++++.+ ...+.|+++.|+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999996431100111211 3589999999999999999999 5569999999987765
Q ss_pred C
Q 037989 425 K 425 (432)
Q Consensus 425 ~ 425 (432)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 4
No 131
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=93.59 E-value=0.33 Score=38.39 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=51.8
Q ss_pred HHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEEEE
Q 037989 21 VEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKGVLVLVT 97 (432)
Q Consensus 21 v~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~vlV~V~ 97 (432)
|++||..++ .+.+.|..||+++..+..++. ...|.++|.+.+..+- +.+.++.|..+ ..-++.+++...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gd~v~~~~~ 72 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGG-----TLRGREAIREFFEEFFESFPDIRFEIHDI---FADGDRVVVEWT 72 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTS-----EEESHHHHHHHHHHHHHHEEEEEEEEEEE---EEETTEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCC-----cccCHHHHHHHHHHHHhcCCceEEEEEEE---EEcCCEEEEEEE
Confidence 688999998 456799999999998887744 5899999999988763 45666666665 222344555544
Q ss_pred EEE
Q 037989 98 GYM 100 (432)
Q Consensus 98 G~l 100 (432)
+..
T Consensus 73 ~~~ 75 (102)
T PF12680_consen 73 VTG 75 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.22 E-value=0.006 Score=66.55 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
+-.++||+||+..+.+.+|...|..+|.+..+.+....++++.+|+||++|...+.+.+||...
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 5688999999999999999999999999988776656778889999999999999999998876
No 133
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.06 E-value=0.53 Score=47.36 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 343 AAKNPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...++.+.|-+|... +.-+.|-++|-.||.|.+++++.. ..|-|.|++.+...+++|+.-+ +..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-----ccceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 347899999999987 566779999999999999988532 3467999999999999999999 777777788888
Q ss_pred EccC
Q 037989 421 QKKG 424 (432)
Q Consensus 421 ~ar~ 424 (432)
..+.
T Consensus 359 ~SkQ 362 (494)
T KOG1456|consen 359 VSKQ 362 (494)
T ss_pred eccc
Confidence 7764
No 134
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=92.10 E-value=0.95 Score=37.85 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
...|+.||..++ .+.+.|..+|.++..+.+.... ..+.|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~---~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGS---PPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCC---CCccCHHHHHHHHHHHh
Confidence 466889999888 5778999999999998764321 26889999999998875
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.76 E-value=0.047 Score=60.15 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=62.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
+.....+||+|||...+++.+|+..|..+|.+..+.|.... -+...-|+||.|.+...+..+...+ +..|+.-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 44567899999999999999999999999999998875543 2456679999999988888887777 666654344443
Q ss_pred Ec
Q 037989 421 QK 422 (432)
Q Consensus 421 ~a 422 (432)
..
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 33
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=90.81 E-value=1.4 Score=33.20 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=42.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKF----GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~f----G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
...+|+|+|+. +.+.++|+.+|..| ++ .++.++-+. -+-|.|.+...+.+||.++
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 34689999995 57889999999998 54 345664332 2689999999999999874
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.14 E-value=0.38 Score=51.63 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=58.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...++||+|+...+...-++.++..||.|..+... -|||.+|.++....+++..+ ...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45789999999999999999999999998765431 29999999999999999999 8889888776654
No 138
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.95 E-value=0.14 Score=56.37 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=61.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..++||.|+|+..|.+.|+.++.++|.+....+ +....|+.+|.+||.|.+...+.+++... ...++-+.+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~-vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRL-VTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccch-hhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 578999999999999999999999999998765 33345889999999999999999988777 5555555555554
No 139
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.23 E-value=0.18 Score=48.24 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=46.9
Q ss_pred HHHHHHhh-cCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 361 DQIKSVFV-KFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 361 ~~L~~~F~-~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
++|...|. +||.|..+.| -++..-.-.|-+||.|...+++++|+..+ +-.|+|++|..+..
T Consensus 83 Ed~f~E~~~kygEiee~~V-c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNV-CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhh-hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 9999988644 22222234677999999999999999999 99999999988765
No 140
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.14 E-value=1.2 Score=47.35 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=58.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee---CCeEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVK-FGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF---GDRKVYV 419 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~-fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i---~Gr~l~V 419 (432)
-...|||.||-.-+|..+|+.++.+ +|.|... | +++ -+..|||.|.+.+.+-+.+.+| ++.+ +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-H-HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4688999999999999999999985 5555443 3 443 3456899999999999999998 7764 5688888
Q ss_pred EEccC
Q 037989 420 EQKKG 424 (432)
Q Consensus 420 e~ar~ 424 (432)
.+.+.
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 87753
No 141
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.07 E-value=0.53 Score=43.16 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhc-CCCe---EEEE--EEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC--
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVK-FGPI---KANG--IRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD-- 414 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~-fG~I---~~~~--v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G-- 414 (432)
.++.+|-||+||++.|++++++.+.. +|.. ..+. ............-|||.|.+.+++..-.... |+.|-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999998886665 5555 2221 1111111122456899999999999998888 877622
Q ss_pred ---eEEEEEEc
Q 037989 415 ---RKVYVEQK 422 (432)
Q Consensus 415 ---r~l~Ve~a 422 (432)
....|+.+
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 34556655
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.76 E-value=2 Score=37.87 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=54.5
Q ss_pred CCCCCEEEEcCCCCCCcH-HHH---HHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEE
Q 037989 343 AAKNPVIFVANLPMDVTA-DQI---KSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVY 418 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte-~~L---~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~ 418 (432)
++.-.+|.|+-|..++.. +|| ...++.||+|..+.. .++--|.|.|.|..+|=+|+.+.+....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 344577888877776544 344 445688999998654 345669999999999999999996677787777
Q ss_pred EEEc
Q 037989 419 VEQK 422 (432)
Q Consensus 419 Ve~a 422 (432)
..|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7664
No 143
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=88.45 E-value=2 Score=43.46 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=58.2
Q ss_pred CEEEEc--CCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee--CCeEEEEEE
Q 037989 347 PVIFVA--NLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF--GDRKVYVEQ 421 (432)
Q Consensus 347 ~~vfV~--NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i--~Gr~l~Ve~ 421 (432)
..|.+. |--+.+|.+-|..+-...|.+.++.|..+ ..--|.|+|++.+.+++|-.++ |.-| |...|+|+.
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 344443 55567899999999999999999877433 2346999999999999999999 5554 668999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
+++.
T Consensus 196 AkP~ 199 (494)
T KOG1456|consen 196 AKPT 199 (494)
T ss_pred cCcc
Confidence 9974
No 144
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.99 E-value=1.6 Score=42.66 Aligned_cols=62 Identities=27% Similarity=0.209 Sum_probs=46.8
Q ss_pred HHHHHHhhcCCCeEEEEEEeeCCCCC-CccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 361 DQIKSVFVKFGPIKANGIRIRTNQLR-PNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 361 ~~L~~~F~~fG~I~~~~v~~~~~~g~-~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.++++..++||.+..|-|........ -..--||+|+..+++-+|+--+ |.+||||.++-.+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35677789999999887655533211 1244799999999999999988 99999998776543
No 145
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.18 E-value=2.8 Score=33.61 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
.+..||. .|......||.++|+.||.|. +.+ -.. .-|||.+.+.+.+..++..+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsW--i~d-----TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSW--IND-----TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEE--ECT-----TEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEE--EcC-----CcEEEEeecHHHHHHHHHHh
Confidence 4667776 999999999999999999985 444 222 35999999999999888876
No 146
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=86.72 E-value=4.8 Score=33.76 Aligned_cols=62 Identities=2% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHHHHHHHHcc-CcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 20 FVEQYFKALHQ-YPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 20 Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
-++.||+.+++ +.+.|..||.++..+...+.. ....|.++|.+.+..+ .+.+++++|..+-.
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 67 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGG---RVLGGKAQLARFLAPYRTAFPDLLVDVVVCRN 67 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCC---cEeccHHHHHHHHHHHHHhCchhhceeEEEEe
Confidence 36789999884 778999999999877755431 2456799998877654 24466777665433
No 147
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.50 E-value=4.4 Score=39.90 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCe-EEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDR-KVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr-~l~Ve~ 421 (432)
...|-|=+.++. ....|..+|.+||.|.+.. .+.+..|-+|.|.+...+++||.+.|..|+|. -|.|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv------~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHV------TPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeee------cCCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 344445467765 3456788999999987532 23455689999999999999999999999885 344443
No 148
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=84.25 E-value=18 Score=31.45 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCC-CeeecCCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCC
Q 037989 14 QLVGNSFVEQYFKALHQYPEHLHRFYQDS-SFLSRPGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYC 89 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~-S~l~~~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~ 89 (432)
++|..-|-++==.+-..+++.+.++|.++ +.|...-. | ..+.|.+.|...|..+ .-.+++..|..-..|-..+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s-~--~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVS-N--QLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGT-T--SEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccC-C--ceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 56777666655555558999999999999 77765432 1 2888999999888743 3345556677777777655
Q ss_pred CcEEEEEEEEEeeCC---CC--ceeEEEEEeeeeCCeEEEEec
Q 037989 90 KGVLVLVTGYMSGKT---GK--RRFSQSFFLAPQENGFFVLND 127 (432)
Q Consensus 90 ~~vlV~V~G~l~~~~---~~--~~F~qtF~L~p~~~~y~V~nD 127 (432)
+..++.=+=.+++.+ .. ..--.||+-...+++|.|.+-
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivhh 122 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVHH 122 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEEE
Confidence 543332222333322 22 344678888899999998763
No 149
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.58 E-value=1.7 Score=45.96 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=53.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVK--FGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~--fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
..|.|.++-||..+-.++++.+|+. |-++..|.+-.. .-.||.|++..+|+.|.+.+ -.+|-|+.|.-
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578899999999999999999964 667777766322 12699999999999998887 44577776554
Q ss_pred EE
Q 037989 420 EQ 421 (432)
Q Consensus 420 e~ 421 (432)
+.
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 150
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=81.72 E-value=0.61 Score=46.37 Aligned_cols=80 Identities=13% Similarity=0.295 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCCCcHHHH---HHHhhcCCCeEEEEEEeeCC--CC-CCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 345 KNPVIFVANLPMDVTADQI---KSVFVKFGPIKANGIRIRTN--QL-RPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L---~~~F~~fG~I~~~~v~~~~~--~g-~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
...-+||-+|+.....+.+ ...|.+||.|..+.+..+.. .+ .+.+-++|.|...+++.++|... |..++|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4466888889887665544 34799999998876544331 11 23455899999999999999999 888999887
Q ss_pred EEEEccC
Q 037989 418 YVEQKKG 424 (432)
Q Consensus 418 ~Ve~ar~ 424 (432)
+..++.+
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 6665543
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.14 E-value=2.5 Score=42.94 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=52.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEE
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTN---QLRPNCFSFVEFESISSMQNALKASPITFGDRKVYV 419 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~---~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~V 419 (432)
..|-|.||.+.++.++++.+|...|.|..+.+.-... -......|||.|.|...+..|-..-...|=++-|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 4899999999999999999999999998866522111 112245689999999888777554444444444444
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=81.09 E-value=0.78 Score=45.33 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
..+++|+|++.+.+.+.+...+|..+|....+...........++|+++.|...+.+..+|... ...+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 4688999999999999999999999998877776666666778999999999999999999988 445655554433
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.78 E-value=5 Score=39.23 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=38.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHH
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESIS 399 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~ 399 (432)
+-...||++||+.++...||+..+.+.|..- ..| ....++|-+|..|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~i----swkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSI----SWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCc-eeE----eeecCCcceeEecCCcc
Confidence 3456799999999999999999999887653 122 22235677899998653
No 154
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=79.11 E-value=16 Score=30.24 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQ 85 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q 85 (432)
-..++..|...++ .+.+.+..+|.++..+.+.+.. ...+.|.++|.+.+... ....+.|.+.+....
T Consensus 9 I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~--~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~ 78 (127)
T PF13577_consen 9 IRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG--FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVD 78 (127)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC--EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc--ccccCCHHHHHHHHHHhcccccceeEEccceEEE
Confidence 3567778888888 6677999999999988877521 23788999999998875 333445555544433
No 155
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=77.13 E-value=1.7 Score=45.15 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCC-cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDV-TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~v-te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
.+.+-+.-.++.. +..+|...|.+||.|..|.|-+ ..-.|.|.|.+...+..|-..-+..|++|-|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3444454455553 4578999999999999876622 23458999999888877766669999999999999876
No 156
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.63 E-value=8.2 Score=29.84 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=36.7
Q ss_pred EEEEc-CCCCCCcHHHHHHHhhcCCCeEEE---EEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 348 VIFVA-NLPMDVTADQIKSVFVKFGPIKAN---GIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 348 ~vfV~-NLp~~vte~~L~~~F~~fG~I~~~---~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
++||. +--..++..+|..++..-+.|..- .|.+ ...|.||+-.. +.+..++..+ +..+.|++++|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I------~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI------FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEE------eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45552 223457888999999877666432 1211 23588998854 5778888888 89999999999875
No 157
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=70.05 E-value=46 Score=28.08 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=43.9
Q ss_pred CCEEE-EcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 346 NPVIF-VANLPMDVTADQIKSVFVKF-GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 346 ~~~vf-V~NLp~~vte~~L~~~F~~f-G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
+..+. +...|+.++..+|..+...+ ..|..++|+.+. ..++..+.+.|.+...|..-.... |..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444 44455555556666555555 445566664432 236777899999999999998888 877754
No 158
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=67.67 E-value=9.1 Score=40.67 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHh-hcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCe---eCC-eEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVF-VKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PIT---FGD-RKVYV 419 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F-~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~---i~G-r~l~V 419 (432)
.+++.|+|++...|-..|.+.- +..|.-..+.+++|-....+.|||||.|-+.+++-+..++. |.. |++ +.+.+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3556666666666655554443 23566666667777666677899999999999999998887 554 443 56667
Q ss_pred EEcc
Q 037989 420 EQKK 423 (432)
Q Consensus 420 e~ar 423 (432)
-++|
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 6665
No 159
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=62.30 E-value=29 Score=32.01 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=41.2
Q ss_pred cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEEEEccC
Q 037989 359 TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYVEQKKG 424 (432)
Q Consensus 359 te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~Ve~ar~ 424 (432)
....|+++|..|+.+....+ + ++.+-..|.|.+.+.+.++...+ +..|+|..|++-.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-L-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-E-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEE-c-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999887544 2 24456899999999999999886 4679999999987753
No 160
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=61.30 E-value=49 Score=25.26 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 356 MDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 356 ~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
..++..+++.-+++|+-.. | +...+ | =||.|.+...+.++.... +..+.+.++.++
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~---I-~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR---I-RDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CCccHHHHHHHHhcCCcce---E-EecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 3578889999999998543 3 22222 3 489999999999999998 888887777653
No 161
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=60.36 E-value=54 Score=28.79 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=58.8
Q ss_pred cCcccccccccCCCeeecC-CCCCccceeccHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCcEEEEEEEEEeeC----
Q 037989 30 QYPEHLHRFYQDSSFLSRP-GPDGVMTSITTMKEINDQILSL-DYQNYQTEILTVDAQASYCKGVLVLVTGYMSGK---- 103 (432)
Q Consensus 30 ~~p~~l~~fY~~~S~l~~~-~~~g~~~~~~g~~~I~~~~~sl-~~~~~~~~I~s~d~q~s~~~~vlV~V~G~l~~~---- 103 (432)
.+-+-|..||.+...+.-. +. ...|.++|.+.|... .......+.+..+-|-.-.| =+..++|.+..+
T Consensus 26 ~D~~av~~~YtdDav~f~~~~~-----~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-D~a~~~~~~~~~~~~~ 99 (137)
T COG4319 26 KDADAVADFYTDDAVVFPPPGL-----QRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-DVAFVTALLLLTGTKK 99 (137)
T ss_pred ccHHHHHHhcCCceEEecCCCC-----cccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-CEEEEEEeeeeeccCC
Confidence 4556899999999876544 55 788999999998763 11122344444555533333 335556654332
Q ss_pred C---CCceeEEEEEeeeeCC-eEEEEece
Q 037989 104 T---GKRRFSQSFFLAPQEN-GFFVLNDI 128 (432)
Q Consensus 104 ~---~~~~F~qtF~L~p~~~-~y~V~nDi 128 (432)
+ ....--=|.+|.++.+ +|+|..|-
T Consensus 100 dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh 128 (137)
T COG4319 100 DGPPADLAGRATYVFRKEADGGWKLAHDH 128 (137)
T ss_pred CCcchhheeeeEEEEEEcCCCCEEEEEec
Confidence 2 2244556888888885 99999984
No 162
>PF15601 Imm42: Immunity protein 42
Probab=56.14 E-value=3.7 Score=35.87 Aligned_cols=68 Identities=12% Similarity=0.295 Sum_probs=48.7
Q ss_pred HHHHHHHHHHc----------cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 037989 19 SFVEQYFKALH----------QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASY 88 (432)
Q Consensus 19 ~Fv~~YY~~l~----------~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~ 88 (432)
.|+..||+++. +-|-.+.+||...=. +.+. .....=+++|.+.|..++.+.+...|..++.||.|
T Consensus 16 dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L~--~~~~---~~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~ppW 90 (134)
T PF15601_consen 16 DFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYLR--YEEL---EKALKELEEIRKELKKFPPSEVIWDIEDLSKQPPW 90 (134)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCCC--HHHH---HHHHHHHHHHHHHHhcCChhhheechhhcccCCCC
Confidence 57788887776 334467777765422 2221 12445578999999999999999999999999998
Q ss_pred CCc
Q 037989 89 CKG 91 (432)
Q Consensus 89 ~~~ 91 (432)
++.
T Consensus 91 g~~ 93 (134)
T PF15601_consen 91 GDN 93 (134)
T ss_pred ccc
Confidence 653
No 163
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=56.14 E-value=1.1e+02 Score=25.31 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeee
Q 037989 22 EQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQ 85 (432)
Q Consensus 22 ~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q 85 (432)
+.|+..++ .+.+.+..||+++..+...+. ....|.+++.+.+..+ -|.+.+++|..+-+.
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~----~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~ 67 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGP----GPPVGREGFKEFLKELRAAFPDLRFEIEDVVAE 67 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTT----TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE
Confidence 34445545 468899999999988887653 2677888888777664 355888888776553
No 164
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=51.72 E-value=48 Score=29.66 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEe
Q 037989 1 MAAQAESSAKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEIL 80 (432)
Q Consensus 1 ma~~~~~~~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~ 80 (432)
||+......+..|..|-..|+++||..|..+-.+=.-+|+.++..+ .+.. .+.|.-...--|.
T Consensus 1 ~at~~~~~~~~~pS~vdr~ftr~y~~d~kg~~~D~~i~~Hsnricv-----------I~la------~~hp~l~~g~~i~ 63 (172)
T KOG3266|consen 1 MATEIGMAEPSYPSVVDRYFTRYYKEDFKGSGYDHCIYQHSNRICV-----------ITLA------PSHPALQSGKTIK 63 (172)
T ss_pred CCccccccCCCChhhhhhhhhhhhhhhccCCCCCceEEecCCceEE-----------EEec------CCCchhhccccee
Confidence 6654444456678889999999999998765433333444443221 1111 1111111122367
Q ss_pred eeeeeeeCCCcEEEEEEEEEee
Q 037989 81 TVDAQASYCKGVLVLVTGYMSG 102 (432)
Q Consensus 81 s~d~q~s~~~~vlV~V~G~l~~ 102 (432)
++++|-+-.+...-.|+|..+.
T Consensus 64 sv~~~ign~dRsqnkVSGK~Kk 85 (172)
T KOG3266|consen 64 SVTFQIGNCDRSQNKVSGKGKK 85 (172)
T ss_pred eeecccccchhhhheecccccc
Confidence 7777766344455667776554
No 165
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=46.05 E-value=10 Score=36.19 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=59.1
Q ss_pred HHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEEE
Q 037989 19 SFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVLVLVTG 98 (432)
Q Consensus 19 ~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vlV~V~G 98 (432)
.-|..||..-++++..+.+.|...+.+.++|. .+.|.+ +.+.+.-.+.++|.+||-+- -+.--|=+++|
T Consensus 52 ~~ve~~~~~~~kn~~~~~~s~~~~~~~Lr~G~-----qF~G~Q-----is~~~~~~v~v~i~~Vdl~~-kd~~sl~~l~G 120 (272)
T COG5073 52 KKVETYYMIRHKNKRRLFSSYTRRSGFLRNGA-----QFGGVQ-----ISGYPPLTVEVNIDTVDLPK-KDDYSLPHLCG 120 (272)
T ss_pred eeEeecceecccCceEeeeeccchhhhccCcc-----ccccEe-----ccCCcceEEEEEEEEEeccc-cccccccceee
Confidence 34677888888999999999999888999998 787875 45555445688899999888 44444588999
Q ss_pred EEeeCC
Q 037989 99 YMSGKT 104 (432)
Q Consensus 99 ~l~~~~ 104 (432)
.+.+..
T Consensus 121 ~l~i~~ 126 (272)
T COG5073 121 TLNIQN 126 (272)
T ss_pred EEEEec
Confidence 998776
No 166
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=45.53 E-value=1.8e+02 Score=25.83 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHccCcccccccccCCCee-ecCCCCCccceeccHHHHHHH-HhcCC-CCcceEEEeeeeeeeeCC
Q 037989 13 PQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFL-SRPGPDGVMTSITTMKEINDQ-ILSLD-YQNYQTEILTVDAQASYC 89 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l-~~~~~~g~~~~~~g~~~I~~~-~~sl~-~~~~~~~I~s~d~q~s~~ 89 (432)
-.++-+.=|.||-.+--+.|-.-|.+|.++-+. .|...-|....+.|.+.+.++ ..+|. |. ..+...+..-.+.+
T Consensus 16 lR~~NR~~Ve~Ym~t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFP--DWeW~nv~ifeT~D 93 (162)
T PF03284_consen 16 LRRINRATVEQYMNTKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFP--DWEWYNVRIFETQD 93 (162)
T ss_dssp HHHHHHHHHHHHHC--GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHST--T-EEEEEEEEEBSS
T ss_pred HHHhhHHHHHHHHHcCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCC--CcEEEEEEeecccC
Confidence 345778889999988888888889999976554 577666888899999999884 45542 33 33333333334433
Q ss_pred -CcEEEEEEEE--EeeCC-----CCceeEEEEEeee
Q 037989 90 -KGVLVLVTGY--MSGKT-----GKRRFSQSFFLAP 117 (432)
Q Consensus 90 -~~vlV~V~G~--l~~~~-----~~~~F~qtF~L~p 117 (432)
+.+.|-+-|. +.+.+ -..+|.++|.|.-
T Consensus 94 P~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~n 129 (162)
T PF03284_consen 94 PNHFWVECDGRGKILFPGYPEGYYENHFIHSFELEN 129 (162)
T ss_dssp TTEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEET
T ss_pred CCEEEEEecCccceecCCCCcccceeeeEEEEEeeC
Confidence 5577888775 44444 2567999999873
No 167
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=42.37 E-value=87 Score=31.56 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHccCcccc-cccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc---E
Q 037989 17 GNSFVEQYFKALHQYPEHL-HRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKG---V 92 (432)
Q Consensus 17 g~~Fv~~YY~~l~~~p~~l-~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~---v 92 (432)
+..|-+.||..|+..=... ..||...=.+.+.|. -...|.+.. +.+-..|++++--...+|. .
T Consensus 172 ~~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~--------~~R~viDf~-----~~~y~~Vk~I~Le~i~~n~~~P~ 238 (334)
T PF05941_consen 172 DTIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGV--------SRRNVIDFY-----KKEYVCVKSIELEQIGDNRFLPK 238 (334)
T ss_pred CcccchhHHHHHHHHHHhhhhcccceeEEEEecCc--------chhhhhhhc-----ccceEEEEEEEEEEecCCeeeeE
Confidence 3579999999999655544 677776657777875 234444443 3456777777777766665 4
Q ss_pred EEEEEEE-EeeCC-----CCceeEEEEEeeeeCCeEEEEeceE
Q 037989 93 LVLVTGY-MSGKT-----GKRRFSQSFFLAPQENGFFVLNDIF 129 (432)
Q Consensus 93 lV~V~G~-l~~~~-----~~~~F~qtF~L~p~~~~y~V~nDif 129 (432)
+|+-.|. |..+| ..|-+.-+|+-..--+.|.|+.|--
T Consensus 239 iiT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk~~~~iL~d~~ 281 (334)
T PF05941_consen 239 IITKSGDRVLVRDVDHLIRSRARVGSFVVVKKKKNFLILVDNA 281 (334)
T ss_pred EEeecCCEEEEcchhHHhHhhhccceEEEEEEeceEEEEccCc
Confidence 5666664 44666 4677899999998888999987643
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=42.23 E-value=5.5 Score=40.56 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=51.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFG 413 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~ 413 (432)
.++++|++|...+...++-+.|..+|.+.+..+- .+....++-++|....+...|+...|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3789999999999999999999999999876552 233445667999999999999888766554
No 169
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=40.24 E-value=58 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=25.0
Q ss_pred eEEEeeeeeeeeCCCcEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEEEE
Q 037989 76 QTEILTVDAQASYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFFVL 125 (432)
Q Consensus 76 ~~~I~s~d~q~s~~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~ 125 (432)
.++|..+.-... ++ ...|+..+++++ .... .+|.|...++.|+|.
T Consensus 66 ~~~~~~v~~~~~-g~--~A~V~v~~~~~~g~~~~--~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 66 SIKIVEVEENTI-GD--TATVTVKITYKDGKEKT--FTVPLVKEDGKWKVC 111 (111)
T ss_dssp SEEEEEEEEEEE-SS--EEEEEEEEEETTS-EEE--EEEEEEEETTEEEE-
T ss_pred ceEEEEEEEecc-CC--EEEEEEEEEECCCCeeE--EEEEEEEECCEEEeC
Confidence 344444443333 33 344555566566 4444 367788899999983
No 170
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.10 E-value=54 Score=25.32 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCC-eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 361 DQIKSVFVKFGP-IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 361 ~~L~~~F~~fG~-I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
++|++.|...|- ++.+..++...++.....-||+......... .+ =..++|+++.||..+-+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 467888887774 4555555555544556677888875543333 22 34689999999987654
No 171
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.99 E-value=45 Score=28.37 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=27.1
Q ss_pred cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCC-HHHHHHHHHh
Q 037989 359 TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES-ISSMQNALKA 407 (432)
Q Consensus 359 te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~-~~~a~~Al~~ 407 (432)
+.+.|++.|..|.+++ +...... . .+.|++.|.|.. ......|+..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECCChHHHHHHHHH
Confidence 4578999999999886 3333332 2 467999999984 5666666553
No 172
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=36.62 E-value=34 Score=25.55 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=33.3
Q ss_pred HHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 19 SFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 19 ~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
.-+..|.+.|..+.+.+.+||.+.|.|.-.+ +...+...+.+|.
T Consensus 12 ~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~---------~~~~l~~~L~~L~ 55 (64)
T smart00593 12 KLLSSWLNLLLSDEELLSKYYEPWAFLRDPE---------EGEQLLGLLVGLS 55 (64)
T ss_pred hHHHHHHHHHHhChHHHHHhCCCCceeeChh---------HHHHHHHHHhCcc
Confidence 3467888888889999999999999886422 3466677777664
No 173
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=34.82 E-value=4.3e+02 Score=26.18 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 13 PQLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
..+.-...|..||..|+ .+.+.|..++.++..+...+. ...+.|.++|...|..+
T Consensus 212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 212 DDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPF---PLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCC---CCcccCHHHHHHHHHhh
Confidence 34556677899999998 467789999999988776643 22589999999999886
No 174
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.18 E-value=65 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCeEEEEEEe
Q 037989 361 DQIKSVFVKFGPIKANGIRI 380 (432)
Q Consensus 361 ~~L~~~F~~fG~I~~~~v~~ 380 (432)
.+||++|+.+|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999998766533
No 175
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=33.12 E-value=2.1e+02 Score=28.09 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
....-|++||..++ .+.+.|..++.++..+..... ...+.|.+.|...|..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPY---TLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCC---CcceeCHHHHHHHHHHh
Confidence 34677999999998 667799999999988876532 13689999999999887
No 176
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=1.5e+02 Score=32.23 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcC----CCeEEEEEEeeC----------CCCC-----------------------
Q 037989 345 KNPVIFVANLPMD-VTADQIKSVFVKF----GPIKANGIRIRT----------NQLR----------------------- 386 (432)
Q Consensus 345 ~~~~vfV~NLp~~-vte~~L~~~F~~f----G~I~~~~v~~~~----------~~g~----------------------- 386 (432)
..++|-|-||.|+ +...+|..+|..| |.|..+.|-... ..|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4678999999997 8889999999887 688777651100 0011
Q ss_pred --------------CccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 387 --------------PNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 387 --------------~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
..-||.|+|.+...+....+.+ |+.|...-..+
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1247899999999999999999 99987543333
No 177
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=32.86 E-value=2.2e+02 Score=26.57 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHccC-cccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 037989 15 LVGNSFVEQYFKALHQY-PEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vl 93 (432)
.--..|+..||...-.. .+.|.+|-.+.+.+...|. . +. -.+|..+..-...++ ..
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~-----~---------------~~--~~~v~~~~~~~~~~~-~~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA-----P---------------YK--FVKVDDIKVYKTKDK-GR 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT-----------------------------SE--EEEEEEEEEEEEETT-EE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC-----c---------------eE--EEeeeeEEeecCCCC-cE
Confidence 45678999999998644 4889888888776622222 0 11 244555544444333 33
Q ss_pred EEEEEEEeeCC--CCceeEEEEEe--eeeCCeEEEE
Q 037989 94 VLVTGYMSGKT--GKRRFSQSFFL--APQENGFFVL 125 (432)
Q Consensus 94 V~V~G~l~~~~--~~~~F~qtF~L--~p~~~~y~V~ 125 (432)
+.|. .+++.+ .....+|+|.| ...+++|||.
T Consensus 197 ~~v~-tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQ-TVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE---EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEE-EEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 3333 444444 24556666665 4566899995
No 178
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=32.00 E-value=72 Score=25.56 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHccCcccccccccCCC-eeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 25 FKALHQYPEHLHRFYQDSS-FLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 25 Y~~l~~~p~~l~~fY~~~S-~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
|..|.+.=..+.+|+.+.. +|.|.|.+|...++..+.+..+.|.-..
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 5566666677888888765 6889999999899999999999887554
No 179
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.40 E-value=1.7e+02 Score=30.80 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKF-GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~f-G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
+..|+|-.+|-.++-.||..|...| -.|..++|+++.. -++-...+.|.+..++..-...+ |..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998765 5567777755322 23445789999999999998888 887754
No 180
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=29.37 E-value=3.6e+02 Score=23.24 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHccC-cccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 12 DPQLVGNSFVEQYFKALHQY-PEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
++.++-..|+..+.. .+ ...+..|..+.....-.+ +..+.|.++|.+.|..+ .+.++.++|.++-+
T Consensus 2 ~~~~vV~~F~~a~~~---~D~~~a~~~~~~~d~vy~Nvp----lp~i~G~~~~~~~l~~~~~~~~~~e~~i~~iaa 70 (125)
T PF07858_consen 2 TPEEVVRAFLAALED---RDVDAALASLFDDDAVYHNVP----LPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIAA 70 (125)
T ss_dssp HHHHHHHHHHHHHHH---T-HHHHHHHCEECC-EEEETT----TEEEESHHHHHHHHHCCHCCCEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHc---CCHHHHHHHhcCCCcEEEeCC----CCCcccHHHHHHHHHHHhcccceeEEEEEEEee
Confidence 345666666665531 22 224555555554444333 24789999999999987 45556666655443
No 181
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=28.20 E-value=97 Score=23.69 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCC-eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccCCc
Q 037989 361 DQIKSVFVKFGP-IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKGKL 426 (432)
Q Consensus 361 ~~L~~~F~~fG~-I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~~~ 426 (432)
++|++.|...|- +..+.-+....++..-..-||++....+...++. =..++|..+.||..+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCCCCC
Confidence 467777877665 3444333333344455677888876544333211 235888899999887653
No 182
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=27.52 E-value=4.1e+02 Score=23.03 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC----CCCcceEEEeeeee
Q 037989 9 AKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL----DYQNYQTEILTVDA 84 (432)
Q Consensus 9 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl----~~~~~~~~I~s~d~ 84 (432)
..++-.+|+.-|=++--.++.-+|..+...|.++..|.-.-.+ +.-..+.+|.+.|..+ |-..+..+...+-|
T Consensus 32 s~~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn---~vR~s~~ei~DYF~~FLk~KPqG~IdsR~i~~gc 108 (156)
T COG4875 32 SNVTEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSN---QVRSSRSEILDYFSHFLKLKPQGYIDSRKITLGC 108 (156)
T ss_pred cCccHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeeccccc---ccccCHHHHHHHHHHHhccCCcceecceeEEecc
Confidence 3477889999999999999999999999999999877532221 1345678888887653 21111112222223
Q ss_pred eeeCCCcEEEEEEEEEeeCCCCceeEEEEEeeeeCCeEEEEece
Q 037989 85 QASYCKGVLVLVTGYMSGKTGKRRFSQSFFLAPQENGFFVLNDI 128 (432)
Q Consensus 85 q~s~~~~vlV~V~G~l~~~~~~~~F~qtF~L~p~~~~y~V~nDi 128 (432)
-...+-|.--..-| ++..-.=-=+|.-..+++.|.|.|.-
T Consensus 109 N~AlD~GtYTF~f~----DGs~v~ARYtftY~w~~g~WlI~~HH 148 (156)
T COG4875 109 NNALDAGTYTFIFT----DGSNVQARYTFTYSWIDGTWLIVNHH 148 (156)
T ss_pred ccccccceEEEEEc----CCcceeEEEEEEEEecCCeEEEEecc
Confidence 33333333222221 22211122367778889999998863
No 183
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.19 E-value=91 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIR 379 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~ 379 (432)
.......+++++++..+....+...|..+|.+....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 34567899999999999999999999999999665543
No 184
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=25.36 E-value=44 Score=28.19 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHHHH---------HHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 13 PQLVGNSFVE---------QYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 13 ~~~vg~~Fv~---------~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
...-++.||. .|...|..+++.|.+||.+.|.|...+ ..+.|...+..|.
T Consensus 65 ~~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~~~---------~~~~l~~~L~~L~ 123 (133)
T PF02759_consen 65 SDGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLRDPE---------LREQLLSLLSGLS 123 (133)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTTSHH---------HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceeeCcc---------hHHHHHHHHhhhC
Confidence 3566677764 688889999999999999998886444 2356666666653
No 185
>PRK11901 hypothetical protein; Reviewed
Probab=25.04 E-value=5e+02 Score=26.24 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEE--EeCCHHHHHHHHHhCCCee
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFV--EFESISSMQNALKASPITF 412 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFV--eF~~~~~a~~Al~~~~~~i 412 (432)
.....++|=|-.+ -+++.|+.|.++.+ +..+.| +...+....+|..| .|.+.+.++.|+..|+..+
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~V-YqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHV-YETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEE-EEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3345677766554 44677888777775 333333 22222223456544 7889999999999995544
No 186
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=23.33 E-value=1.2e+02 Score=24.56 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=26.2
Q ss_pred EEEEeCCHHHHHHHHHhC--CCeeCCeEEEEEEc
Q 037989 391 SFVEFESISSMQNALKAS--PITFGDRKVYVEQK 422 (432)
Q Consensus 391 aFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve~a 422 (432)
|.|.|.+..-|++.++.- ...++++.+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 579999999999999987 66788877777654
No 187
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=1.5e+02 Score=30.71 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHh
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~ 407 (432)
.+.|=|-++|.....+||...|..||.- .|+|++-. ...+|-.|.+...+..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvD-----dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVD-----DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEee-----cceeEEeecchHHHHHHhhc
Confidence 4778888999999999999999999753 24443322 24688999988888888655
No 188
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=21.16 E-value=23 Score=33.56 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=51.0
Q ss_pred CCCCCEEEEcC----CCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHh
Q 037989 343 AAKNPVIFVAN----LPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKA 407 (432)
Q Consensus 343 ~~~~~~vfV~N----Lp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~ 407 (432)
.....+++-|+ |...++.+.+...|+.-|++..+++..+.+ |+++.|+|+.+.-..+.-.++..
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 34567888888 888999999999999999999888766654 78899999988766665555554
No 189
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=20.91 E-value=5.5e+02 Score=22.20 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCC-eeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcE
Q 037989 14 QLVGNSFVEQYFKALHQYPEHLHRFYQDSS-FLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S-~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~v 92 (432)
.+|...|-..+--++.++-+-|-.|+-++. ++-+... ....|.++|...-..-+-......+..........+ +
T Consensus 10 aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~----E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~G~d-~ 84 (125)
T PF11533_consen 10 AEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGAG----ENLYGHDAIRAFRAARPGGGPARTLERTVITTFGRD-F 84 (125)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETT----EEEESHHHHHHHHHHS--TTTT-EEEEEEEEEETTT-E
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCC----ccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEecCc-e
Confidence 467777765555555566777877777654 4544322 277899999998877644444445555555444444 3
Q ss_pred EEEEEEEEeeCC-CCc-eeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 93 LVLVTGYMSGKT-GKR-RFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 93 lV~V~G~l~~~~-~~~-~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
- +|+=.+.-.+ ..+ +=+|+++-. +.||.|..=-..+++
T Consensus 85 A-~v~tef~r~~~~~~GRQsQtWvr~--~~gWrIvaAHVS~~~ 124 (125)
T PF11533_consen 85 A-TVSTEFRRDGSGRIGRQSQTWVRF--PDGWRIVAAHVSLMD 124 (125)
T ss_dssp E-EEEEEEEETTECCEEEEEEEEEEE--TTEEEEEEEEEEEE-
T ss_pred E-EEEEEEEECCCCceeEeEEEEEEC--CCCEEEEEEEEeecc
Confidence 3 3444555555 322 236777655 558999876655543
No 190
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.79 E-value=17 Score=38.70 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
.-|++|++|+.++++-.+|..+.+.+....++.+...........+++|.|.--..+..|+.++ ++.+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4589999999999999999999988755544332111111123567899999777777777777 655544
Done!