Query 037989
Match_columns 432
No_of_seqs 363 out of 2400
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 1.7E-37 6E-42 272.5 13.8 127 10-136 6-139 (140)
2 1gy6_A Nuclear transport facto 100.0 5.6E-36 1.9E-40 258.7 14.8 122 10-136 4-126 (127)
3 3ujm_A Rasputin; NTF2-like fol 100.0 3.6E-36 1.2E-40 257.4 12.2 116 12-132 2-120 (120)
4 1zo2_A NTF2, nuclear transport 100.0 1E-35 3.4E-40 257.7 14.9 120 9-133 7-128 (129)
5 1gy7_A Nuclear transport facto 100.0 6.7E-35 2.3E-39 251.3 14.9 118 12-134 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 4.9E-34 1.7E-38 254.6 14.5 129 9-137 7-152 (154)
7 3nv0_B NTF2-related export pro 100.0 1.5E-33 5.1E-38 250.5 15.2 116 11-133 31-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 9E-33 3.1E-37 242.6 11.7 119 9-134 9-138 (140)
9 1of5_A MRNA export factor MEX6 99.8 4.4E-21 1.5E-25 179.2 10.7 124 11-136 8-205 (221)
10 1jkg_B TAP; NTF2-like domain, 99.8 1.1E-20 3.8E-25 180.9 13.3 124 11-136 12-172 (250)
11 1q40_B MEX67, mRNA export fact 99.8 1.1E-19 3.7E-24 169.7 11.5 124 11-136 11-211 (219)
12 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-18 8.3E-23 141.5 11.0 82 343-424 16-98 (99)
13 2lxi_A RNA-binding protein 10; 99.7 1.6E-17 5.4E-22 134.4 6.4 82 347-428 2-86 (91)
14 2cq0_A Eukaryotic translation 99.7 1.9E-16 6.6E-21 130.3 12.3 88 343-430 12-100 (103)
15 3s8s_A Histone-lysine N-methyl 99.7 8.4E-17 2.9E-21 134.9 9.8 81 345-425 5-86 (110)
16 2dgo_A Cytotoxic granule-assoc 99.7 3.7E-16 1.3E-20 131.2 13.8 86 342-427 11-97 (115)
17 2khc_A Testis-specific RNP-typ 99.7 4.7E-16 1.6E-20 131.1 14.2 81 343-423 37-118 (118)
18 3md1_A Nuclear and cytoplasmic 99.7 2E-16 6.9E-21 124.7 11.0 80 347-426 2-82 (83)
19 2rs2_A Musashi-1, RNA-binding 99.7 1.8E-16 6.2E-21 132.4 10.7 86 343-428 22-107 (109)
20 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.2E-16 7.6E-21 125.6 10.5 82 345-426 5-87 (87)
21 2cpz_A CUG triplet repeat RNA- 99.7 2.7E-16 9.2E-21 132.1 11.5 87 343-429 22-109 (115)
22 3s7r_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 124.8 11.2 80 343-422 8-87 (87)
23 2do4_A Squamous cell carcinoma 99.7 4.4E-16 1.5E-20 127.5 12.0 85 343-428 14-99 (100)
24 1whw_A Hypothetical protein ri 99.7 4E-16 1.4E-20 127.4 11.2 85 344-428 6-91 (99)
25 1x5u_A Splicing factor 3B subu 99.7 5E-16 1.7E-20 128.1 11.7 84 344-427 13-97 (105)
26 3nv0_A Nuclear RNA export fact 99.7 8.5E-16 2.9E-20 142.3 14.4 121 12-134 11-185 (205)
27 1x5t_A Splicing factor 3B subu 99.7 3E-16 1E-20 127.2 10.1 86 345-430 4-91 (96)
28 2dgs_A DAZ-associated protein 99.7 4.6E-16 1.6E-20 127.1 11.2 85 344-428 8-92 (99)
29 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-15 5.6E-20 131.5 15.2 85 343-427 39-124 (139)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.6E-16 8.8E-21 129.2 9.6 86 344-429 10-96 (102)
31 2e5h_A Zinc finger CCHC-type a 99.7 7.1E-16 2.4E-20 124.5 12.0 81 343-423 13-94 (94)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.2E-16 1.4E-20 123.4 10.2 80 344-423 5-85 (85)
33 3n9u_C Cleavage and polyadenyl 99.7 3.4E-16 1.2E-20 139.4 10.3 82 344-425 53-137 (156)
34 2dnz_A Probable RNA-binding pr 99.7 5.8E-16 2E-20 125.3 10.8 84 345-428 4-88 (95)
35 2dng_A Eukaryotic translation 99.7 1E-15 3.5E-20 126.0 12.3 84 344-429 13-97 (103)
36 2cqc_A Arginine/serine-rich sp 99.7 6.1E-16 2.1E-20 125.0 10.8 82 343-424 12-94 (95)
37 2jrs_A RNA-binding protein 39; 99.7 4.4E-16 1.5E-20 129.9 10.3 83 344-426 24-107 (108)
38 2dnm_A SRP46 splicing factor; 99.6 3.7E-16 1.3E-20 128.6 9.6 85 343-427 10-95 (103)
39 2cpf_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 126.0 10.8 85 345-429 4-92 (98)
40 2cqg_A TDP-43, TAR DNA-binding 99.6 1.3E-15 4.4E-20 125.3 12.8 85 343-428 12-96 (103)
41 4f25_A Polyadenylate-binding p 99.6 5.4E-16 1.9E-20 130.7 10.7 79 346-426 5-84 (115)
42 2d9p_A Polyadenylate-binding p 99.6 5.9E-16 2E-20 127.4 10.6 86 342-429 11-97 (103)
43 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-15 3.4E-20 126.3 11.9 87 343-430 12-102 (105)
44 2x1f_A MRNA 3'-END-processing 99.6 6.8E-16 2.3E-20 125.4 10.7 82 346-427 2-84 (96)
45 1x5s_A Cold-inducible RNA-bind 99.6 4.5E-16 1.5E-20 127.8 9.6 86 343-428 9-95 (102)
46 2dh8_A DAZ-associated protein 99.6 5.9E-16 2E-20 127.8 10.3 87 343-429 13-99 (105)
47 1x4h_A RNA-binding protein 28; 99.6 8.3E-16 2.8E-20 128.0 11.2 87 343-429 12-105 (111)
48 2lkz_A RNA-binding protein 5; 99.6 3E-16 1E-20 128.2 8.2 81 344-424 7-94 (95)
49 3ucg_A Polyadenylate-binding p 99.6 9.8E-16 3.3E-20 122.3 11.0 82 345-427 5-87 (89)
50 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.7E-20 127.5 12.7 84 342-425 13-96 (116)
51 1oo0_B CG8781-PA, drosophila Y 99.6 6.7E-16 2.3E-20 128.6 10.2 84 344-427 24-108 (110)
52 3ns6_A Eukaryotic translation 99.6 1E-16 3.6E-21 131.7 5.1 83 345-427 5-95 (100)
53 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-15 4.5E-20 125.6 11.6 83 344-428 13-97 (104)
54 1p27_B RNA-binding protein 8A; 99.6 5.9E-16 2E-20 127.9 9.5 83 344-426 21-104 (106)
55 2cph_A RNA binding motif prote 99.6 1E-15 3.5E-20 126.6 10.9 86 343-428 12-100 (107)
56 2cpe_A RNA-binding protein EWS 99.6 8.7E-16 3E-20 128.5 10.6 87 343-429 12-107 (113)
57 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.4E-21 128.4 5.2 81 347-427 2-85 (90)
58 2dgp_A Bruno-like 4, RNA bindi 99.6 6.2E-16 2.1E-20 127.8 9.3 87 343-429 10-100 (106)
59 2cq3_A RNA-binding protein 9; 99.6 3.3E-15 1.1E-19 122.8 13.5 85 342-428 11-96 (103)
60 2cqp_A RNA-binding protein 12; 99.6 9.1E-16 3.1E-20 125.0 10.0 83 344-426 13-96 (98)
61 2jwn_A Embryonic polyadenylate 99.6 1E-15 3.4E-20 130.2 10.7 84 345-429 35-119 (124)
62 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.7E-20 125.0 10.2 79 345-423 12-99 (99)
63 1x4b_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 129.1 9.8 85 345-429 26-110 (116)
64 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.2E-15 1.1E-19 122.9 12.7 84 342-427 11-95 (103)
65 2dhg_A TRNA selenocysteine ass 99.6 1.1E-15 3.8E-20 125.8 9.5 85 344-429 7-94 (104)
66 2div_A TRNA selenocysteine ass 99.6 1.7E-15 5.8E-20 123.6 10.3 84 344-427 7-96 (99)
67 4a8x_A RNA-binding protein wit 99.6 1.3E-15 4.4E-20 121.2 9.3 81 345-425 3-85 (88)
68 2dgx_A KIAA0430 protein; RRM d 99.6 1.6E-15 5.6E-20 123.4 10.1 82 343-427 6-92 (96)
69 2cq4_A RNA binding motif prote 99.6 4.4E-16 1.5E-20 130.6 6.9 81 345-426 24-105 (114)
70 2dgw_A Probable RNA-binding pr 99.6 3.3E-15 1.1E-19 120.0 11.5 83 343-428 7-90 (91)
71 2ywk_A Putative RNA-binding pr 99.6 1.7E-15 5.7E-20 122.6 9.8 81 343-424 13-94 (95)
72 2fy1_A RNA-binding motif prote 99.6 2E-15 6.9E-20 127.5 10.6 82 344-426 5-87 (116)
73 2m2b_A RNA-binding protein 10; 99.6 4.9E-16 1.7E-20 133.9 6.9 83 344-427 21-110 (131)
74 1s79_A Lupus LA protein; RRM, 99.6 9.7E-16 3.3E-20 126.9 8.1 81 343-424 8-88 (103)
75 2do0_A HnRNP M, heterogeneous 99.6 6.2E-15 2.1E-19 123.4 12.8 81 343-424 12-93 (114)
76 1x4a_A Splicing factor, argini 99.6 9.6E-15 3.3E-19 121.4 13.6 83 344-429 20-103 (109)
77 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.9E-16 2.4E-20 126.6 6.4 80 345-426 18-99 (100)
78 2kxn_B Transformer-2 protein h 99.6 1.5E-15 5.3E-20 130.8 8.7 83 344-426 44-127 (129)
79 1sjq_A Polypyrimidine tract-bi 99.6 2.1E-15 7E-20 125.3 9.0 79 343-427 13-94 (105)
80 2err_A Ataxin-2-binding protei 99.6 2.5E-15 8.6E-20 125.4 9.5 81 343-425 26-107 (109)
81 1h2v_Z 20 kDa nuclear CAP bind 99.6 7E-15 2.4E-19 130.2 12.9 84 344-427 37-121 (156)
82 2dgv_A HnRNP M, heterogeneous 99.6 3.2E-15 1.1E-19 120.2 9.7 81 345-427 7-88 (92)
83 2fc9_A NCL protein; structure 99.6 5.9E-15 2E-19 120.9 11.3 82 343-428 12-94 (101)
84 1p1t_A Cleavage stimulation fa 99.6 1.8E-15 6.2E-20 124.4 8.1 83 345-427 7-90 (104)
85 2kn4_A Immunoglobulin G-bindin 99.6 5.1E-15 1.8E-19 131.1 11.6 84 344-427 68-152 (158)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.6E-15 2.6E-19 127.0 12.3 80 343-422 60-140 (140)
87 1x4c_A Splicing factor, argini 99.6 1.2E-14 4.1E-19 120.9 12.5 79 345-430 14-98 (108)
88 2cq1_A PTB-like protein L; RRM 99.6 7.9E-15 2.7E-19 121.1 11.3 79 343-427 12-93 (101)
89 1wg5_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 122.4 10.1 82 343-425 12-94 (104)
90 3ex7_B RNA-binding protein 8A; 99.6 3.2E-15 1.1E-19 127.5 9.1 82 344-425 20-102 (126)
91 2ek1_A RNA-binding protein 12; 99.6 1.8E-15 6E-20 122.4 7.2 80 345-424 14-94 (95)
92 3ulh_A THO complex subunit 4; 99.6 7.2E-15 2.5E-19 121.5 11.0 79 344-423 27-106 (107)
93 2nlw_A Eukaryotic translation 99.6 4.8E-15 1.6E-19 122.8 9.7 83 344-428 13-103 (105)
94 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.3E-15 4.6E-20 118.2 6.0 76 347-422 1-76 (77)
95 2mss_A Protein (musashi1); RNA 99.6 1.4E-15 4.7E-20 117.7 6.0 75 348-422 1-75 (75)
96 2cpy_A RNA-binding protein 12; 99.6 2.8E-15 9.5E-20 126.0 8.1 82 343-425 12-94 (114)
97 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.9E-15 2.3E-19 131.7 11.0 83 344-426 70-153 (165)
98 1x4d_A Matrin 3; structural ge 99.6 1.1E-14 3.8E-19 120.4 11.1 78 344-427 13-94 (102)
99 2jvo_A Nucleolar protein 3; nu 99.6 6.8E-15 2.3E-19 122.7 9.7 78 343-428 28-106 (108)
100 2cpi_A CCR4-NOT transcription 99.6 6.2E-15 2.1E-19 123.3 9.3 85 342-426 11-102 (111)
101 2fc8_A NCL protein; structure 99.6 1.3E-14 4.5E-19 118.9 11.1 85 343-430 12-97 (102)
102 1x4e_A RNA binding motif, sing 99.6 1.2E-15 4.2E-20 120.9 4.6 79 345-423 4-83 (85)
103 3r27_A HnRNP L, heterogeneous 99.6 1.7E-14 6E-19 118.6 11.6 77 344-426 19-98 (100)
104 2jvr_A Nucleolar protein 3; RN 99.6 6.2E-15 2.1E-19 123.8 9.0 79 345-427 27-107 (111)
105 2dis_A Unnamed protein product 99.6 8.1E-15 2.8E-19 121.6 9.6 83 345-427 7-94 (109)
106 1wez_A HnRNP H', FTP-3, hetero 99.6 7.1E-15 2.4E-19 121.4 9.1 82 344-427 13-94 (102)
107 2cpx_A Hypothetical protein FL 99.6 3.9E-15 1.3E-19 124.8 7.6 85 344-428 23-108 (115)
108 1iqt_A AUF1, heterogeneous nuc 99.6 1.5E-15 5.1E-20 117.4 4.5 75 348-422 1-75 (75)
109 2xnq_A Nuclear polyadenylated 99.6 1.7E-14 5.9E-19 117.8 11.0 76 344-427 20-97 (97)
110 2ki2_A SS-DNA binding protein 99.6 1.2E-15 4E-20 122.3 3.9 80 347-427 2-82 (90)
111 2lea_A Serine/arginine-rich sp 99.6 3.2E-15 1.1E-19 129.7 7.0 83 345-427 46-129 (135)
112 2kt5_A RNA and export factor-b 99.6 4E-14 1.4E-18 120.4 13.7 82 344-426 33-115 (124)
113 2cpd_A Apobec-1 stimulating pr 99.6 3E-14 1E-18 116.3 12.3 78 344-429 13-93 (99)
114 2db1_A Heterogeneous nuclear r 99.6 8.3E-15 2.8E-19 124.1 9.1 80 344-424 15-97 (118)
115 2la4_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 121.8 7.0 75 345-425 26-101 (101)
116 1wex_A Hypothetical protein (r 99.6 2.1E-14 7.2E-19 119.1 11.0 77 344-426 13-92 (104)
117 1wel_A RNA-binding protein 12; 99.6 3.8E-15 1.3E-19 127.0 6.7 82 343-425 22-104 (124)
118 2dgt_A RNA-binding protein 30; 99.6 2.7E-14 9.2E-19 115.0 11.3 79 343-429 7-86 (92)
119 1fj7_A Nucleolin RBD1, protein 99.5 1.8E-15 6.1E-20 124.0 4.1 81 345-427 16-97 (101)
120 2a3j_A U1 small nuclear ribonu 99.5 1E-14 3.5E-19 125.4 9.0 80 345-427 28-112 (127)
121 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 122.7 10.0 78 344-427 29-109 (119)
122 1x4g_A Nucleolysin TIAR; struc 99.5 1.9E-14 6.4E-19 119.7 10.2 79 344-428 23-102 (109)
123 2e5j_A Methenyltetrahydrofolat 99.5 1.9E-14 6.5E-19 117.1 10.1 79 344-427 17-96 (97)
124 2wbr_A GW182, gawky, LD47780P; 99.5 1.1E-14 3.8E-19 116.4 8.4 73 345-423 6-79 (89)
125 2dnn_A RNA-binding protein 12; 99.5 8.6E-15 3E-19 122.5 8.0 78 345-424 15-92 (109)
126 2dnq_A RNA-binding protein 4B; 99.5 2.3E-14 8E-19 114.9 10.3 77 344-428 6-83 (90)
127 1x4f_A Matrin 3; structural ge 99.5 1.9E-14 6.5E-19 120.9 9.7 79 344-428 23-105 (112)
128 2xs2_A Deleted in azoospermia- 99.5 6.4E-15 2.2E-19 120.9 6.6 81 345-427 8-88 (102)
129 1x5o_A RNA binding motif, sing 99.5 3.3E-14 1.1E-18 119.0 11.0 83 343-426 22-113 (114)
130 2dnp_A RNA-binding protein 14; 99.5 3.6E-14 1.2E-18 113.7 10.6 77 343-427 6-83 (90)
131 2krb_A Eukaryotic translation 99.5 7.4E-15 2.5E-19 115.6 6.3 72 346-419 1-80 (81)
132 2ytc_A PRE-mRNA-splicing facto 99.5 4.6E-14 1.6E-18 111.6 10.8 75 343-423 9-85 (85)
133 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4E-19 117.9 7.5 80 343-427 13-93 (96)
134 2lmi_A GRSF-1, G-rich sequence 99.5 3.7E-15 1.3E-19 123.8 4.4 82 343-425 8-92 (107)
135 1why_A Hypothetical protein ri 99.5 3.8E-14 1.3E-18 115.2 10.2 78 344-427 15-95 (97)
136 2hgl_A HNRPF protein, heteroge 99.5 8.3E-15 2.8E-19 127.5 6.6 79 344-424 42-124 (136)
137 3q2s_C Cleavage and polyadenyl 99.5 1.5E-14 5.1E-19 136.7 8.8 80 345-424 67-149 (229)
138 2cpj_A Non-POU domain-containi 99.5 3.6E-14 1.2E-18 115.8 9.9 79 343-427 12-91 (99)
139 2hvz_A Splicing factor, argini 99.5 1.4E-14 4.9E-19 118.5 7.3 76 347-427 1-77 (101)
140 3d2w_A TAR DNA-binding protein 99.5 2.6E-14 8.9E-19 114.9 8.7 80 343-428 8-87 (89)
141 1q42_A MTR2, mRNA transport re 99.5 1.3E-14 4.6E-19 129.3 7.5 101 11-118 23-146 (201)
142 2lcw_A RNA-binding protein FUS 99.3 9.6E-16 3.3E-20 129.0 0.0 84 344-427 5-97 (116)
143 1nu4_A U1A RNA binding domain; 99.5 1.4E-14 4.9E-19 117.5 7.0 81 344-427 6-91 (97)
144 2dgu_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 115.5 10.7 75 345-427 10-85 (103)
145 1wf1_A RNA-binding protein RAL 99.5 5.1E-14 1.7E-18 117.3 10.4 72 345-424 26-99 (110)
146 1x5p_A Negative elongation fac 99.5 1.5E-13 5.1E-18 111.8 12.5 77 344-428 13-90 (97)
147 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 7.8E-19 115.6 7.4 78 345-429 7-87 (93)
148 2e5g_A U6 snRNA-specific termi 99.5 8.8E-14 3E-18 112.5 10.3 77 345-427 7-84 (94)
149 2i2y_A Fusion protein consists 99.5 4.9E-14 1.7E-18 123.9 9.2 79 344-427 71-150 (150)
150 2kvi_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 115.6 7.3 77 343-427 7-85 (96)
151 2hgm_A HNRPF protein, heteroge 99.5 2.2E-14 7.4E-19 123.2 6.5 78 345-424 41-120 (126)
152 2dha_A FLJ20171 protein; RRM d 99.5 1.7E-14 5.7E-19 123.4 5.7 80 344-424 21-104 (123)
153 3lqv_A PRE-mRNA branch site pr 99.5 5.2E-14 1.8E-18 118.0 8.6 79 345-426 7-86 (115)
154 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 125.7 11.1 82 344-425 11-92 (196)
155 1whx_A Hypothetical protein ri 99.5 4.9E-14 1.7E-18 118.0 7.3 75 345-425 9-84 (111)
156 4f02_A Polyadenylate-binding p 99.5 1.7E-13 5.7E-18 127.4 11.2 81 345-425 14-95 (213)
157 1fxl_A Paraneoplastic encephal 99.5 2.4E-13 8.1E-18 119.8 11.5 82 346-427 2-84 (167)
158 2j8a_A Histone-lysine N-methyl 99.5 8E-14 2.7E-18 118.9 8.0 79 346-424 2-95 (136)
159 3md3_A Nuclear and cytoplasmic 99.5 2.8E-13 9.7E-18 119.2 11.9 80 345-424 86-166 (166)
160 1l3k_A Heterogeneous nuclear r 99.5 2E-13 6.9E-18 123.9 11.3 83 345-427 103-185 (196)
161 1b7f_A Protein (SXL-lethal pro 99.5 1.7E-13 5.9E-18 121.1 10.2 82 345-426 2-84 (168)
162 2e44_A Insulin-like growth fac 99.5 1.1E-13 3.8E-18 112.0 8.1 77 345-425 14-92 (96)
163 3egn_A RNA-binding protein 40; 99.5 3.8E-14 1.3E-18 123.6 5.6 80 345-425 44-130 (143)
164 1sjr_A Polypyrimidine tract-bi 99.5 2.6E-13 8.7E-18 121.2 10.4 78 346-427 46-126 (164)
165 2yh0_A Splicing factor U2AF 65 99.4 4.8E-13 1.6E-17 121.6 12.3 84 344-427 112-196 (198)
166 3pgw_S U1-70K; protein-RNA com 99.4 3.6E-13 1.2E-17 138.8 12.7 82 345-426 101-183 (437)
167 1wf0_A TDP-43, TAR DNA-binding 99.4 8.7E-14 3E-18 111.0 6.2 78 345-428 4-81 (88)
168 2hgn_A Heterogeneous nuclear r 99.4 3.6E-14 1.2E-18 123.9 4.1 80 344-426 44-124 (139)
169 2qfj_A FBP-interacting repress 99.4 3.1E-13 1.1E-17 124.5 10.7 85 345-429 124-209 (216)
170 2dnl_A Cytoplasmic polyadenyla 99.4 1.9E-13 6.6E-18 114.7 8.4 77 345-423 7-86 (114)
171 3beg_B Splicing factor, argini 99.4 8.8E-14 3E-18 117.1 6.3 76 345-427 15-96 (115)
172 2f3j_A RNA and export factor b 99.4 2.3E-13 7.8E-18 123.5 8.9 81 344-425 86-167 (177)
173 3zzy_A Polypyrimidine tract-bi 99.4 7.3E-13 2.5E-17 114.0 11.5 77 346-427 28-108 (130)
174 1wg1_A KIAA1579 protein, homol 99.4 2.2E-13 7.5E-18 108.8 7.7 74 345-425 4-78 (88)
175 2cjk_A Nuclear polyadenylated 99.4 1.3E-13 4.5E-18 121.9 6.9 80 346-425 87-166 (167)
176 2voo_A Lupus LA protein; RNA-b 99.4 5.5E-13 1.9E-17 122.6 11.0 80 345-425 108-187 (193)
177 2g4b_A Splicing factor U2AF 65 99.4 5.7E-13 2E-17 118.3 10.5 77 346-422 94-171 (172)
178 4f02_A Polyadenylate-binding p 99.4 5.1E-13 1.8E-17 124.1 10.0 78 346-425 103-181 (213)
179 2cjk_A Nuclear polyadenylated 99.4 3.8E-13 1.3E-17 118.9 7.7 80 345-425 2-81 (167)
180 2hzc_A Splicing factor U2AF 65 99.4 9E-13 3.1E-17 104.4 8.7 70 345-421 5-86 (87)
181 2e5i_A Heterogeneous nuclear r 99.4 1.3E-12 4.6E-17 111.6 10.3 76 347-428 26-105 (124)
182 3md3_A Nuclear and cytoplasmic 99.4 9.6E-13 3.3E-17 115.7 9.6 79 347-426 1-80 (166)
183 2qfj_A FBP-interacting repress 99.4 9.1E-13 3.1E-17 121.4 9.0 81 345-425 27-108 (216)
184 3tyt_A Heterogeneous nuclear r 99.4 2E-12 6.9E-17 119.9 10.2 76 344-424 2-79 (205)
185 2bz2_A Negative elongation fac 99.4 1.5E-12 5E-17 110.8 8.4 76 344-427 37-113 (121)
186 2cq2_A Hypothetical protein LO 99.3 2.9E-12 9.9E-17 107.8 9.6 75 345-425 24-106 (114)
187 1b7f_A Protein (SXL-lethal pro 99.3 3.3E-12 1.1E-16 112.8 10.5 78 345-422 88-168 (168)
188 2diu_A KIAA0430 protein; struc 99.3 2.6E-12 8.8E-17 103.8 8.3 72 347-428 10-87 (96)
189 1fje_B Nucleolin RBD12, protei 99.3 2.1E-12 7.3E-17 115.2 8.7 77 345-426 98-175 (175)
190 3nmr_A Cugbp ELAV-like family 99.3 2.8E-12 9.6E-17 113.9 9.0 81 345-425 2-88 (175)
191 3pgw_A U1-A; protein-RNA compl 99.3 1.5E-11 5.1E-16 118.5 14.8 76 343-423 204-281 (282)
192 1fxl_A Paraneoplastic encephal 99.3 3.5E-12 1.2E-16 112.2 9.4 78 345-422 87-167 (167)
193 3pgw_A U1-A; protein-RNA compl 99.3 5.3E-12 1.8E-16 121.6 11.1 80 344-426 7-91 (282)
194 2pe8_A Splicing factor 45; RRM 99.3 1.3E-11 4.4E-16 102.4 11.1 80 345-424 7-93 (105)
195 3nmr_A Cugbp ELAV-like family 99.3 6.2E-12 2.1E-16 111.6 8.8 77 345-422 94-174 (175)
196 2ghp_A U4/U6 snRNA-associated 99.3 5.9E-12 2E-16 121.9 9.4 82 344-426 208-292 (292)
197 2dit_A HIV TAT specific factor 99.3 3.5E-11 1.2E-15 100.5 12.5 81 344-428 13-105 (112)
198 3smz_A Protein raver-1, ribonu 99.3 1.6E-11 5.6E-16 118.3 11.1 81 346-426 95-176 (284)
199 2adc_A Polypyrimidine tract-bi 99.3 8.2E-12 2.8E-16 117.2 8.7 77 344-425 32-110 (229)
200 3smz_A Protein raver-1, ribonu 99.3 6.5E-12 2.2E-16 121.1 8.2 83 344-427 182-266 (284)
201 3u1l_A PRE-mRNA-splicing facto 99.2 9.9E-12 3.4E-16 117.8 8.0 78 344-427 132-231 (240)
202 1fje_B Nucleolin RBD12, protei 99.2 2.7E-12 9.4E-17 114.5 3.6 82 343-426 10-92 (175)
203 1qm9_A Polypyrimidine tract-bi 99.2 6.7E-12 2.3E-16 114.5 6.1 76 345-425 2-79 (198)
204 1of5_B MTR2, YKL186C, mRNA tra 99.2 5.3E-11 1.8E-15 105.1 10.5 99 13-118 15-121 (184)
205 3sde_A Paraspeckle component 1 99.2 4.8E-11 1.6E-15 114.2 10.0 76 344-425 20-96 (261)
206 3sde_A Paraspeckle component 1 99.2 7.4E-11 2.5E-15 112.9 10.4 79 346-425 96-179 (261)
207 2g4b_A Splicing factor U2AF 65 99.2 5.5E-11 1.9E-15 105.4 8.9 74 345-425 3-88 (172)
208 2ghp_A U4/U6 snRNA-associated 99.2 4.1E-11 1.4E-15 115.9 8.6 82 345-427 116-199 (292)
209 2yh0_A Splicing factor U2AF 65 99.2 7E-11 2.4E-15 107.1 9.3 74 345-425 3-88 (198)
210 1qm9_A Polypyrimidine tract-bi 99.1 7E-11 2.4E-15 107.6 8.0 76 345-425 119-197 (198)
211 2adc_A Polypyrimidine tract-bi 99.1 1.3E-10 4.6E-15 108.9 9.8 76 345-425 150-228 (229)
212 1jmt_A Splicing factor U2AF 35 99.1 3.3E-11 1.1E-15 99.6 4.3 71 351-422 20-103 (104)
213 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.3E-10 2.1E-14 91.4 11.3 76 346-427 10-92 (100)
214 3tyt_A Heterogeneous nuclear r 99.1 1E-10 3.4E-15 108.4 6.9 76 345-422 122-204 (205)
215 3v4m_A Splicing factor U2AF 65 99.1 3.3E-10 1.1E-14 93.8 8.9 80 345-424 4-96 (105)
216 3ue2_A Poly(U)-binding-splicin 99.0 7.3E-10 2.5E-14 93.7 9.3 80 345-424 19-108 (118)
217 3tht_A Alkylated DNA repair pr 98.8 1.1E-08 3.6E-13 101.9 9.8 73 344-422 16-96 (345)
218 3s6e_A RNA-binding protein 39; 98.7 1.4E-08 4.9E-13 85.2 7.2 74 346-423 7-91 (114)
219 1owx_A Lupus LA protein, SS-B, 98.7 2.7E-08 9.1E-13 84.3 8.8 75 342-422 14-93 (121)
220 2dnr_A Synaptojanin-1; RRM dom 98.6 1.1E-07 3.7E-12 76.0 8.1 75 344-426 5-87 (91)
221 1ufw_A Synaptojanin 2; RNP dom 98.3 6.7E-07 2.3E-11 71.8 5.3 73 343-424 12-94 (95)
222 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.7E-11 81.7 7.3 65 359-423 142-211 (222)
223 2l9w_A U4/U6 snRNA-associated- 97.4 0.00044 1.5E-08 56.8 8.0 72 345-422 20-97 (117)
224 4i4k_A Uncharacterized protein 97.3 0.0015 5.3E-08 56.0 11.0 107 17-128 21-136 (143)
225 2dhx_A Poly (ADP-ribose) polym 97.1 0.0029 1E-07 51.3 9.4 73 345-425 7-84 (104)
226 3gzr_A Uncharacterized protein 96.8 0.026 9E-07 48.5 13.5 113 18-135 9-133 (146)
227 3cu3_A Domain of unknown funct 96.7 0.01 3.6E-07 52.0 10.4 113 16-133 17-139 (172)
228 3d9r_A Ketosteroid isomerase-l 96.6 0.013 4.5E-07 48.4 9.9 112 15-132 11-133 (135)
229 3hx8_A MLR2180 protein, putati 96.4 0.028 9.7E-07 45.9 10.9 113 13-130 4-124 (129)
230 3gwr_A Putative calcium/calmod 96.1 0.044 1.5E-06 47.0 10.6 108 20-132 13-128 (144)
231 3b7c_A Uncharacterized protein 95.8 0.24 8.1E-06 40.6 13.5 104 19-129 9-120 (122)
232 2gxf_A Hypothetical protein YY 95.3 0.12 4.3E-06 43.4 10.4 106 18-129 6-121 (142)
233 1wey_A Calcipressin 1; structu 95.3 0.075 2.6E-06 43.2 8.3 74 346-425 5-84 (104)
234 1whv_A Poly(A)-specific ribonu 95.2 0.072 2.5E-06 42.7 7.8 55 345-408 15-69 (100)
235 1wwh_A Nucleoporin 35, nucleop 95.2 0.1 3.6E-06 43.4 9.1 71 345-422 23-94 (119)
236 3h51_A Putative calcium/calmod 95.1 0.52 1.8E-05 40.2 14.0 113 14-133 19-141 (156)
237 2ux0_A Calcium-calmodulin depe 95.1 0.16 5.4E-06 42.6 10.4 113 17-131 15-136 (143)
238 1uw4_A UPF3X; nonsense mediate 94.9 0.12 3.9E-06 41.1 8.1 66 347-412 2-70 (91)
239 3f7s_A Uncharacterized NTF2-li 94.7 0.47 1.6E-05 39.5 12.3 113 15-131 8-127 (142)
240 2rcd_A Uncharacterized protein 94.2 1.1 3.8E-05 36.8 13.4 111 14-130 14-125 (129)
241 3ctr_A Poly(A)-specific ribonu 94.1 0.067 2.3E-06 43.0 5.1 53 347-408 7-59 (101)
242 1tp6_A Hypothetical protein PA 94.1 0.33 1.1E-05 40.5 9.8 107 17-129 12-126 (128)
243 3duk_A NTF2-like protein of un 94.0 0.73 2.5E-05 38.2 11.8 107 18-132 15-124 (125)
244 3bb9_A Putative orphan protein 93.4 0.27 9.1E-06 41.7 8.2 107 16-128 31-146 (148)
245 3p3d_A Nucleoporin 53; structu 93.3 0.11 3.7E-06 44.0 5.3 76 347-423 8-97 (132)
246 3soy_A NTF2-like superfamily p 93.3 0.74 2.5E-05 39.1 10.9 113 14-129 10-133 (145)
247 3rob_A Uncharacterized conserv 93.2 0.69 2.4E-05 39.2 10.4 108 14-130 16-135 (139)
248 3pq1_A Poly(A) RNA polymerase; 93.2 0.039 1.3E-06 56.6 2.8 62 346-413 53-114 (464)
249 3er7_A Uncharacterized NTF2-li 92.7 0.079 2.7E-06 44.8 3.7 106 20-132 7-126 (131)
250 2r4i_A Uncharacterized protein 92.6 1.2 4.1E-05 35.5 10.8 105 19-129 10-119 (123)
251 3dm8_A Uncharacterized protein 92.4 0.92 3.1E-05 38.1 10.2 96 18-116 7-112 (143)
252 3mg1_A OCP, orange carotenoid 92.4 0.67 2.3E-05 44.4 9.9 109 16-129 193-306 (323)
253 2owp_A Hypothetical protein BX 92.3 3.7 0.00012 34.1 13.6 112 14-132 11-126 (129)
254 2rfr_A Uncharacterized protein 91.8 0.97 3.3E-05 38.0 9.6 113 16-134 20-144 (155)
255 3blz_A NTF2-like protein of un 91.6 2.1 7.3E-05 35.1 11.3 110 17-133 14-126 (128)
256 3b8l_A Uncharacterized protein 91.5 1.1 3.8E-05 38.2 9.8 117 15-133 28-153 (163)
257 3cnx_A Uncharacterized protein 91.4 2 6.7E-05 37.8 11.4 111 18-133 15-157 (170)
258 2chc_A Protein RV3472; hypothe 90.6 1.8 6.1E-05 37.2 10.3 111 16-132 15-132 (170)
259 3jum_A Phenazine biosynthesis 90.5 0.6 2.1E-05 41.9 7.2 95 17-113 43-144 (185)
260 3a76_A Gamma-hexachlorocyclohe 90.3 1.2 4E-05 39.0 8.9 113 16-132 32-154 (176)
261 3f14_A Uncharacterized NTF2-li 90.2 0.84 2.9E-05 36.6 7.3 89 19-116 4-100 (112)
262 3h3h_A Uncharacterized snoal-l 88.4 0.42 1.4E-05 38.9 4.2 66 15-82 8-82 (122)
263 3ff0_A Phenazine biosynthesis 88.2 1.2 4E-05 39.2 7.1 84 15-102 19-108 (163)
264 3fsd_A NTF2-like protein of un 88.2 3.6 0.00012 33.9 10.0 109 12-128 12-129 (134)
265 2l08_A Regulator of nonsense t 88.0 0.5 1.7E-05 37.8 4.2 64 345-412 8-78 (97)
266 3fka_A Uncharacterized NTF-2 l 88.0 1.9 6.5E-05 35.3 8.0 103 19-131 13-119 (120)
267 1nww_A Limonene-1,2-epoxide hy 87.8 7.2 0.00025 32.2 11.9 51 17-71 24-75 (149)
268 3gzb_A Putative snoal-like pol 87.4 0.69 2.4E-05 38.8 4.8 81 17-105 22-105 (154)
269 1ohp_A Steroid delta-isomerase 87.3 2 6.7E-05 33.9 7.6 52 17-71 7-59 (125)
270 3k0z_A Putative polyketide cyc 87.3 3.1 0.00011 35.5 9.4 63 17-83 36-101 (159)
271 2bng_A MB2760; epoxide hydrola 86.8 6 0.00021 32.9 10.8 93 16-115 16-112 (149)
272 4h3u_A Hypothetical protein; s 86.7 4.9 0.00017 34.0 10.3 103 19-129 29-138 (158)
273 3ff2_A Uncharacterized cystati 85.8 3.2 0.00011 33.1 8.1 63 18-83 5-70 (117)
274 3dxo_A Uncharacterized snoal-l 85.7 4.2 0.00014 32.9 9.0 64 18-86 6-77 (121)
275 3dmc_A NTF2-like protein; stru 84.7 5 0.00017 33.2 9.1 60 10-70 7-67 (134)
276 3fh1_A Uncharacterized NTF2-li 84.5 10 0.00036 30.6 10.9 98 14-116 16-116 (129)
277 3f7x_A Putative polyketide cyc 84.2 5.6 0.00019 33.5 9.4 61 17-82 22-83 (151)
278 2kn4_A Immunoglobulin G-bindin 84.0 0.88 3E-05 38.7 4.1 31 376-408 3-33 (158)
279 3en8_A Uncharacterized NTF-2 l 83.8 14 0.00047 30.2 11.4 63 17-82 7-70 (128)
280 1s5a_A Hypothetical protein YE 82.8 7.8 0.00027 31.8 9.6 54 17-70 12-67 (150)
281 3g8z_A Protein of unknown func 82.5 6.4 0.00022 32.9 9.0 54 17-70 22-76 (148)
282 1oh0_A Steroid delta-isomerase 82.1 3 0.0001 33.5 6.5 64 16-82 8-74 (131)
283 3hk4_A MLR7391 protein; NTF2-l 82.0 14 0.00047 30.8 10.8 97 19-119 24-126 (136)
284 3ebt_A Uncharacterized NTF2-li 81.7 12 0.00042 29.9 10.2 65 18-82 6-76 (132)
285 3i0y_A Putative polyketide cyc 80.9 12 0.0004 30.3 9.9 51 17-71 10-61 (140)
286 3ec9_A Uncharacterized NTF2-li 80.7 15 0.00052 29.8 10.6 66 18-83 15-84 (140)
287 2gex_A SNOL; alpha+beta barrel 80.3 17 0.00059 30.1 11.0 63 17-84 6-71 (152)
288 2f86_B Hypothetical protein K1 80.2 7.6 0.00026 32.8 8.6 110 18-132 15-133 (143)
289 3fgy_A Uncharacterized NTF2-li 79.6 1.7 5.8E-05 35.4 4.2 54 17-70 7-61 (135)
290 1sjw_A Nogalonic acid methyl e 79.3 12 0.0004 30.6 9.4 64 18-84 5-72 (144)
291 3g0k_A Putative membrane prote 79.0 14 0.00047 31.1 9.9 66 13-84 25-94 (148)
292 2gey_A ACLR protein; alpha+bet 77.8 22 0.00074 29.8 10.9 62 17-84 6-70 (158)
293 3ehc_A Snoal-like polyketide c 77.3 18 0.00062 28.9 9.9 59 18-84 6-67 (128)
294 1z1s_A Hypothetical protein PA 77.1 18 0.00061 30.6 10.2 54 18-71 26-81 (163)
295 2rgq_A Domain of unknown funct 76.6 30 0.001 28.4 12.4 108 16-131 11-127 (144)
296 2f99_A Aklanonic acid methyl e 75.9 25 0.00084 29.3 10.7 65 17-84 13-81 (153)
297 2a15_A Hypothetical protein RV 75.9 22 0.00077 28.6 10.2 63 17-80 9-78 (139)
298 3ef8_A Putative scyalone dehyd 75.5 25 0.00085 29.2 10.6 110 18-131 14-132 (150)
299 3ke7_A Putative ketosteroid is 73.8 24 0.00083 29.3 9.9 101 28-132 28-130 (134)
300 3f9s_A Putative polyketide cyc 71.2 40 0.0014 27.4 11.3 66 18-84 9-79 (146)
301 1tuh_A BAL32A, hypothetical pr 71.2 9.4 0.00032 31.9 6.8 67 16-82 30-100 (156)
302 2i2y_A Fusion protein consists 70.2 1.7 5.8E-05 36.7 1.8 38 386-424 11-50 (150)
303 3kkg_A Putative snoal-like pol 67.5 24 0.00081 28.9 8.5 64 17-84 11-80 (146)
304 3f40_A Uncharacterized NTF2-li 62.4 11 0.00037 30.2 5.1 49 18-71 9-58 (114)
305 2k54_A Protein ATU0742; protei 61.5 56 0.0019 25.5 10.8 90 18-115 6-101 (123)
306 3grd_A Uncharacterized NTF2-su 61.1 8.2 0.00028 31.2 4.3 96 18-116 7-112 (134)
307 3mso_A Steroid delta-isomerase 53.0 12 0.00041 31.3 4.0 53 15-70 9-62 (143)
308 3g16_A Uncharacterized protein 52.4 94 0.0032 26.5 9.7 70 11-82 6-78 (156)
309 3rga_A Epoxide hydrolase; NTF2 50.9 23 0.0008 33.2 6.1 51 17-70 8-59 (283)
310 3rga_A Epoxide hydrolase; NTF2 50.7 87 0.003 29.2 10.1 56 13-71 136-192 (283)
311 3d45_A Poly(A)-specific ribonu 50.7 37 0.0013 34.9 8.0 54 346-408 440-493 (507)
312 3ejv_A Uncharacterized protein 42.5 1.6E+02 0.0055 25.2 11.3 72 14-85 25-106 (179)
313 3f8h_A Putative polyketide cyc 39.5 1.6E+02 0.0054 24.2 9.2 48 19-70 22-70 (150)
314 3cwz_B RAB6IP1, RAB6-interacti 39.1 36 0.0012 33.7 5.5 80 12-100 173-277 (384)
315 3ub1_A ORF13-like protein; NTF 32.8 2.9E+02 0.01 25.6 10.4 88 15-126 155-245 (261)
316 2g0c_A ATP-dependent RNA helic 30.6 77 0.0026 23.0 4.9 67 348-423 2-75 (76)
317 3f8x_A Putative delta-5-3-keto 30.0 48 0.0016 27.9 4.1 54 14-70 19-73 (148)
318 4e8u_A Putative uncharacterize 23.9 1.6E+02 0.0054 25.7 6.3 57 348-407 14-82 (172)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.7e-37 Score=272.51 Aligned_cols=127 Identities=43% Similarity=0.708 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCC--CCcc-ceeccHHHHHHHHhcCCCCcceEEEeeeeeee
Q 037989 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGP--DGVM-TSITTMKEINDQILSLDYQNYQTEILTVDAQA 86 (432)
Q Consensus 10 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~--~g~~-~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~ 86 (432)
.|++++||++||++||++|+++|+.|++||+++|.|+|.+. +|.+ ..+.|+++|.++|++|||++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 47899999999999999999999999999999999999764 3543 47899999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEeeCC-CCceeEEEEEeeeeC---CeEEEEeceEEeecCcc
Q 037989 87 SYCKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQE---NGFFVLNDIFRFVDDDL 136 (432)
Q Consensus 87 s~~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~---~~y~V~nDifr~~~~~~ 136 (432)
+++|||||+|+|.|+.++ +.|+|+|+|+|+|++ ++|||+||||||+|+.+
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 999999999999999999 999999999999996 89999999999999876
No 2
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=5.6e-36 Score=258.73 Aligned_cols=122 Identities=24% Similarity=0.394 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCC
Q 037989 10 KVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYC 89 (432)
Q Consensus 10 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~ 89 (432)
.|++++||+.||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 57899999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEEEEeceEEeecCcc
Q 037989 90 KGVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFFVLNDIFRFVDDDL 136 (432)
Q Consensus 90 ~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~nDifr~~~~~~ 136 (432)
|||||+|+|.|+.++ +.|+|+|+|+|+|++++|||+||||||++..+
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999999988 99999999999999999999999999999765
No 3
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-36 Score=257.42 Aligned_cols=116 Identities=40% Similarity=0.674 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeec-CCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 037989 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSR-PGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~-~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~ 90 (432)
++++||++||++||++|+++|+.|++||.++|.|+| +|. .+.|.++|.++|++|||++|+++|.++||||+++|
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~-----~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~ 76 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESK-----LVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGN 76 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCC-----CEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCc-----EecCHHHHHHHHHcCCCcceEEEEecccceEcCCC
Confidence 578899999999999999999999999999987665 454 89999999999999999999999999999999999
Q ss_pred cEEEEEEEEEeeCC-CCceeEEEEEeeeeC-CeEEEEeceEEee
Q 037989 91 GVLVLVTGYMSGKT-GKRRFSQSFFLAPQE-NGFFVLNDIFRFV 132 (432)
Q Consensus 91 ~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~-~~y~V~nDifr~~ 132 (432)
||||+|+|.|+.++ +.|+|+|+|+|+|++ ++|||+||||||.
T Consensus 77 gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 77 GVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred CEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 99999999999999 899999999999997 8999999999995
No 4
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=1e-35 Score=257.75 Aligned_cols=120 Identities=30% Similarity=0.471 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 037989 9 AKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASY 88 (432)
Q Consensus 9 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~ 88 (432)
..|++++||+.||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||+++
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~ 81 (129)
T 1zo2_A 7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQPSP 81 (129)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEECT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEEeC
Confidence 357899999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEeeCC-CCceeEEEEEeeeeC-CeEEEEeceEEeec
Q 037989 89 CKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQE-NGFFVLNDIFRFVD 133 (432)
Q Consensus 89 ~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~-~~y~V~nDifr~~~ 133 (432)
+|||||+|+|.|+.++ +.|+|+|+|+|+|++ ++|||+||||||++
T Consensus 82 ~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 82 NNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp BSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred CCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999999999 999999999999998 79999999999986
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=6.7e-35 Score=251.28 Aligned_cols=118 Identities=31% Similarity=0.536 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC-CC
Q 037989 12 DPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASY-CK 90 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~-~~ 90 (432)
++++||+.||++||++|+++|+.|++||+++|.|+|+|. .+.|+++|.++|.+|||++|+|+|.++||||+. +|
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 489999999999999999999999999999999999997 999999999999999999999999999999995 58
Q ss_pred cEEEEEEEEEeeCC--CCceeEEEEEeeeeCCeEEEEeceEEeecC
Q 037989 91 GVLVLVTGYMSGKT--GKRRFSQSFFLAPQENGFFVLNDIFRFVDD 134 (432)
Q Consensus 91 ~vlV~V~G~l~~~~--~~~~F~qtF~L~p~~~~y~V~nDifr~~~~ 134 (432)
||||+|+|.++.++ +.|+|+|+|+|+|++++|||+||||||++.
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 99999999999887 899999999999999999999999999974
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=4.9e-34 Score=254.60 Aligned_cols=129 Identities=24% Similarity=0.381 Sum_probs=115.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCc----------cceeccHHHHHHHHhcC--CCCcce
Q 037989 9 AKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV----------MTSITTMKEINDQILSL--DYQNYQ 76 (432)
Q Consensus 9 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~----------~~~~~g~~~I~~~~~sl--~~~~~~ 76 (432)
..+++++||+.||++||++|+++|+.|++||+++|+|+|++..+. ...+.|+++|.++|.+| ||++|+
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~ 86 (154)
T 2qiy_A 7 MGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLK 86 (154)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceE
Confidence 447899999999999999999999999999999999999943221 45899999999999999 999999
Q ss_pred EEEeeeeeeeeCC--CcEEEEEEEEEeeCC-CCceeEEEEEeeeeC--CeEEEEeceEEeecCccc
Q 037989 77 TEILTVDAQASYC--KGVLVLVTGYMSGKT-GKRRFSQSFFLAPQE--NGFFVLNDIFRFVDDDLS 137 (432)
Q Consensus 77 ~~I~s~d~q~s~~--~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~--~~y~V~nDifr~~~~~~~ 137 (432)
|+|.++|||++++ +||||+|+|.|+.++ +.|+|+|+|+|+|++ ++|||+||||||+++++.
T Consensus 87 h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 87 LKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 9999999999987 999999999999988 999999999999997 599999999999999774
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-33 Score=250.47 Aligned_cols=116 Identities=25% Similarity=0.380 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC--
Q 037989 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASY-- 88 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~-- 88 (432)
..+.+||+.||++||++|+++|+.|++||.++|.|+|+|. .+.|.++|.++|++||+ |+++|.++|||+++
T Consensus 31 ~~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~ 103 (154)
T 3nv0_B 31 EELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEG 103 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCcc
Confidence 4567899999999999999999999999999999999997 89999999999999995 79999999999998
Q ss_pred -----CCcEEEEEEEEEeeCC-CCceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 89 -----CKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 89 -----~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
++||||+|+|.|+.++ +.|+|+|+|+|+|++++|||+||||||+|
T Consensus 104 ~~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 104 VTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp CCGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred ccCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 6799999999999999 99999999999999999999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.98 E-value=9e-33 Score=242.60 Aligned_cols=119 Identities=24% Similarity=0.348 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 037989 9 AKVDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASY 88 (432)
Q Consensus 9 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~ 88 (432)
...++.+||+.||++||++|+++|+.|++||+++|+|+|+|. .+.|.++|.++|.+||++ +|+|.++|||+++
T Consensus 9 ~~~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~ 81 (140)
T 1jkg_A 9 YVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVH 81 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECC
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcC
Confidence 345688999999999999999999999999999999999986 899999999999999988 6899999999996
Q ss_pred ------CCcEEEEEEEEEeeCC-CCceeEEEEEeeeeC----CeEEEEeceEEeecC
Q 037989 89 ------CKGVLVLVTGYMSGKT-GKRRFSQSFFLAPQE----NGFFVLNDIFRFVDD 134 (432)
Q Consensus 89 ------~~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~~----~~y~V~nDifr~~~~ 134 (432)
+|||||+|+|.|+.++ +.|+|+|+|+|+|++ ++|||+||||||++.
T Consensus 82 ~~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 82 DEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TTTSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CcccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 5899999999999999 999999999999974 799999999999976
No 9
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.84 E-value=4.4e-21 Score=179.24 Aligned_cols=124 Identities=13% Similarity=0.254 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCc----------------------------------cce
Q 037989 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGV----------------------------------MTS 56 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~----------------------------------~~~ 56 (432)
.....++..||++||+++|++|..|..||+++|+|+|.+.-.. ...
T Consensus 8 ~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l 87 (221)
T 1of5_A 8 DALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRL 87 (221)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhh
Confidence 4578899999999999999999999999999999988763100 147
Q ss_pred eccHHHHHHHHhcCCCCcceEEE------eeeeeeeeCC-CcEEEEEEEEEeeCC-------------------------
Q 037989 57 ITTMKEINDQILSLDYQNYQTEI------LTVDAQASYC-KGVLVLVTGYMSGKT------------------------- 104 (432)
Q Consensus 57 ~~g~~~I~~~~~sl~~~~~~~~I------~s~d~q~s~~-~~vlV~V~G~l~~~~------------------------- 104 (432)
..|.++|.++|.+|| .++|.| .++|||+... +||+|+|+|.++..+
T Consensus 88 ~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (221)
T 1of5_A 88 SIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGY 165 (221)
T ss_dssp CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------------
T ss_pred ccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 789999999999999 558999 5999999865 789999999997644
Q ss_pred --------CCceeEEEEEeeeeCCeEEEEeceEEeecCcc
Q 037989 105 --------GKRRFSQSFFLAPQENGFFVLNDIFRFVDDDL 136 (432)
Q Consensus 105 --------~~~~F~qtF~L~p~~~~y~V~nDifr~~~~~~ 136 (432)
..|.|+|||+|.|.+++|+|+||+||+-....
T Consensus 166 ~~~~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~s~ 205 (221)
T 1of5_A 166 NSTSNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAYST 205 (221)
T ss_dssp ---CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCC
T ss_pred cccccccCCccceEEEEEEEecCCeEEEEeeEEEeecCCC
Confidence 26899999999999889999999999875443
No 10
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.84 E-value=1.1e-20 Score=180.87 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHHHccC-cccccccccCCCeeecCCCC-C------c---------------------cceeccHH
Q 037989 11 VDPQLVGNSFVEQYFKALHQY-PEHLHRFYQDSSFLSRPGPD-G------V---------------------MTSITTMK 61 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~S~l~~~~~~-g------~---------------------~~~~~g~~ 61 (432)
.....+|..||++||+++|++ |..|.++|+++|+|+|.... + . ...+.|.+
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~ 91 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHH
Confidence 346689999999999999998 99999999999999988431 1 0 04689999
Q ss_pred HHHHHHhcCCCCcceEEEe--eeeeeeeCCCcEEEEEEEEEeeCC-----CCceeEEEEEeeee-CCeEEEEeceEEeec
Q 037989 62 EINDQILSLDYQNYQTEIL--TVDAQASYCKGVLVLVTGYMSGKT-----GKRRFSQSFFLAPQ-ENGFFVLNDIFRFVD 133 (432)
Q Consensus 62 ~I~~~~~sl~~~~~~~~I~--s~d~q~s~~~~vlV~V~G~l~~~~-----~~~~F~qtF~L~p~-~~~y~V~nDifr~~~ 133 (432)
+|.++|.+|| .++|.+. ++|||+..+++|+|+|+|.++..+ ..|.|+|+|+|.|. +++|+|+||+||+.+
T Consensus 92 ~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~ 169 (250)
T 1jkg_B 92 NVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 169 (250)
T ss_dssp HHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEEC
Confidence 9999999999 5588887 899999988899999999998743 68999999999996 468999999999986
Q ss_pred Ccc
Q 037989 134 DDL 136 (432)
Q Consensus 134 ~~~ 136 (432)
...
T Consensus 170 ~s~ 172 (250)
T 1jkg_B 170 ASS 172 (250)
T ss_dssp CCH
T ss_pred CCh
Confidence 653
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.80 E-value=1.1e-19 Score=169.74 Aligned_cols=124 Identities=16% Similarity=0.282 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCC---------------c----------------------
Q 037989 11 VDPQLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDG---------------V---------------------- 53 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g---------------~---------------------- 53 (432)
.....++..||++||+++|++|..|..||+++|+|+|...-. .
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 457889999999999999999999999999999998875210 0
Q ss_pred cceeccHHHHHHHHhcCCCCcceEEE------eeeeeeeeC-CCcEEEEEEEEEeeCC----------------------
Q 037989 54 MTSITTMKEINDQILSLDYQNYQTEI------LTVDAQASY-CKGVLVLVTGYMSGKT---------------------- 104 (432)
Q Consensus 54 ~~~~~g~~~I~~~~~sl~~~~~~~~I------~s~d~q~s~-~~~vlV~V~G~l~~~~---------------------- 104 (432)
.....|.++|.++|.+|| .++|.| .++|||+.+ .+||||+|+|.++..+
T Consensus 91 ~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 026789999999999999 558999 599999653 4789999999996422
Q ss_pred ----------CCceeEEEEEeeee-CCeEEEEeceEEeecCcc
Q 037989 105 ----------GKRRFSQSFFLAPQ-ENGFFVLNDIFRFVDDDL 136 (432)
Q Consensus 105 ----------~~~~F~qtF~L~p~-~~~y~V~nDifr~~~~~~ 136 (432)
..|.|+|||+|.|. +++|+|+||+||+-....
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~ 211 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTS 211 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCS
T ss_pred cccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCC
Confidence 57999999999999 579999999999976544
No 12
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=141.54 Aligned_cols=82 Identities=15% Similarity=0.301 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..++++|||+|||+++++++|+++|++||.|..+.|..+..+|+++|||||+|.+.++|++||+.+ +..|+||.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 347899999999999999999999999999999999988888999999999999999999999988 9999999999999
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 987
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=134.42 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=75.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEEEEcc
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFG-PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGDRKVYVEQKK 423 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve~ar 423 (432)
.+|||+|||+++++++|+++|++|| .|..+.|+.++.+|+++|||||+|.+.++|.+||+.+ +..|+||+|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 7999998888888999999999999999999999987 567999999999998
Q ss_pred CCccc
Q 037989 424 GKLNC 428 (432)
Q Consensus 424 ~~~~~ 428 (432)
++.+.
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87553
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=130.28 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=81.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+++++|||||+|.+.+++++||..+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456899999999999999999999999999999999888888899999999999999999999998 9999999999999
Q ss_pred ccCCcccCC
Q 037989 422 KKGKLNCLR 430 (432)
Q Consensus 422 ar~~~~~~r 430 (432)
++++....+
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 988765443
No 15
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=134.91 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+||++++++++|+++|++||.|..+.|+.+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5689999999999999999999999999999999999888999999999999999999999998 999999999999997
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.+
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 16
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=3.7e-16 Score=131.20 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+.++|||+|||+++++++|+++|++||.|..|.|..+..+++.+|||||+|.+.+++++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999888778899999999999999999999998 999999999999
Q ss_pred EccCCcc
Q 037989 421 QKKGKLN 427 (432)
Q Consensus 421 ~ar~~~~ 427 (432)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987544
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=4.7e-16 Score=131.13 Aligned_cols=81 Identities=28% Similarity=0.509 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..+.++|||+|||+++++++|+++|++||.|..+.|..+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 446799999999999999999999999999999999888788899999999999999999999998 9999999999998
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=2e-16 Score=124.66 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=76.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++|+..+ +..|+|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999888888999999999999999999999987 99999999999999886
Q ss_pred c
Q 037989 426 L 426 (432)
Q Consensus 426 ~ 426 (432)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.8e-16 Score=132.39 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
..++++|||+|||+++++++|+++|++||.|..|.|..+..+|+++|||||+|.+.+++.+||..++..|+|+.|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 44679999999999999999999999999999999988888899999999999999999999999998999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887553
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=125.56 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5689999999999999999999999999999999888778899999999999999999999988 999999999999998
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 763
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=2.7e-16 Score=132.13 Aligned_cols=87 Identities=21% Similarity=0.442 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999999888878899999999999999999999988 9999999999999
Q ss_pred ccCCcccC
Q 037989 422 KKGKLNCL 429 (432)
Q Consensus 422 ar~~~~~~ 429 (432)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98865543
No 22
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=3.2e-16 Score=124.82 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.+++++||+.++..|+|+.|+|+++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45679999999999999999999999999999999988888899999999999999999999987788999999999875
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=127.45 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+..+. +|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999997776 7889999999999999999999988 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++...
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987653
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=127.35 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+.++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36799999999999999999999999999999999888778899999999999999999999998 99999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 886553
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=128.12 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46799999999999999999999999999999999888778899999999999999999999998 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 26
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.66 E-value=8.5e-16 Score=142.28 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHHccC-----ccccccccc-CCCeee--cCCC----C------------------------C---
Q 037989 12 DPQLVGNSFVEQYFKALHQY-----PEHLHRFYQ-DSSFLS--RPGP----D------------------------G--- 52 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~S~l~--~~~~----~------------------------g--- 52 (432)
....++..|+.+||.++|++ |..|..+|+ ++|+++ .+-. . .
T Consensus 11 ~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~ 90 (205)
T 3nv0_A 11 EVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAA 90 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHH
Confidence 45678999999999999987 899999999 678654 2110 0 0
Q ss_pred --ccceeccHHHHHHHHhcCCCCcceEEEee--eeeeeeCCCcEEEEEEEEEeeC---------C-CCceeEEEEEeeee
Q 037989 53 --VMTSITTMKEINDQILSLDYQNYQTEILT--VDAQASYCKGVLVLVTGYMSGK---------T-GKRRFSQSFFLAPQ 118 (432)
Q Consensus 53 --~~~~~~g~~~I~~~~~sl~~~~~~~~I~s--~d~q~s~~~~vlV~V~G~l~~~---------~-~~~~F~qtF~L~p~ 118 (432)
......|.++|.++|.+||. ++|.+.+ +|||+..+++++|+|+|.++.. + ..|.|+|+|+|.|.
T Consensus 91 ~r~~~L~~G~~~I~~~L~~LP~--T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~ 168 (205)
T 3nv0_A 91 NRASRISHGAMDIVVALSRLPA--TIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPR 168 (205)
T ss_dssp SSCCSCEEHHHHHHHHHHHSCC--EEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEEC
T ss_pred HHHHHHhhCHHHHHHHHHhCCC--eEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEEC
Confidence 01355799999999999994 4899885 8999999889999999999865 3 78999999999998
Q ss_pred C-CeEEEEeceEEeecC
Q 037989 119 E-NGFFVLNDIFRFVDD 134 (432)
Q Consensus 119 ~-~~y~V~nDifr~~~~ 134 (432)
+ ++|+|+||++..-..
T Consensus 169 ~~g~~~I~ND~L~Ir~~ 185 (205)
T 3nv0_A 169 GEGKVAIVSDQLFISSM 185 (205)
T ss_dssp STTCEEEEEEEEEEECC
T ss_pred CCCcEEEEecEEEeeCC
Confidence 6 799999999976543
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=127.23 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKAN-GIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~-~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+++|||+|||+++++++|+++|++||.|..+ .|..+..++.++|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57999999999999999999999999999998 88877788899999999999999999999988 99999999999999
Q ss_pred cCCcccCC
Q 037989 423 KGKLNCLR 430 (432)
Q Consensus 423 r~~~~~~r 430 (432)
+++....+
T Consensus 84 ~~~~~~~~ 91 (96)
T 1x5t_A 84 FKKDSKGS 91 (96)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 87655443
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=127.07 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKK 423 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar 423 (432)
...++|||+|||+++++++|+++|++||.|..+.|+.+..+++++|||||+|.+.+++++||+..+..|+|+.|+|++++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999999888888899999999999999999999944999999999999998
Q ss_pred CCccc
Q 037989 424 GKLNC 428 (432)
Q Consensus 424 ~~~~~ 428 (432)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 29
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-15 Score=131.52 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..|.|..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999999988888889999999999999999999998 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987544
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=129.20 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.|+.+..+++++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46799999999999999999999999999999999888788899999999999999999999988 99999999999999
Q ss_pred cCCcccC
Q 037989 423 KGKLNCL 429 (432)
Q Consensus 423 r~~~~~~ 429 (432)
+++....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8765443
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=124.51 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 346789999999999999999999999999999999888788889999999999999999999998 9999999999998
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
+|
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=4.2e-16 Score=123.37 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.+++.+|++.+ +..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35799999999999999999999999999999999888888889999999999999999999888 99999999999987
Q ss_pred c
Q 037989 423 K 423 (432)
Q Consensus 423 r 423 (432)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=139.40 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFG--PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
.+.++|||+|||+++++++|+++|++|| .|..+.|+.+..+|+++|||||+|.+.+++++||..+ +..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3579999999999999999999999999 9999999999889999999999999999999999998 999999999999
Q ss_pred EccCC
Q 037989 421 QKKGK 425 (432)
Q Consensus 421 ~ar~~ 425 (432)
+++++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98753
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=125.28 Aligned_cols=84 Identities=19% Similarity=0.375 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.+++.+||+.+ +..|+|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5689999999999999999999999999999999888888899999999999999999999988 999999999999998
Q ss_pred CCccc
Q 037989 424 GKLNC 428 (432)
Q Consensus 424 ~~~~~ 428 (432)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76554
No 35
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1e-15 Score=126.05 Aligned_cols=84 Identities=23% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++|| |..|.|+.+..+++++|||||+|.+.+++++|| .+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4579999999999999999999999997 999999888888999999999999999999999 67 99999999999999
Q ss_pred cCCcccC
Q 037989 423 KGKLNCL 429 (432)
Q Consensus 423 r~~~~~~ 429 (432)
+++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8765543
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=125.03 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.+++++||..+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999888888889999999999999999999988 9999999999999
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 37
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=129.88 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45799999999999999999999999999999999888888899999999999999999999988 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8875
No 38
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=128.56 Aligned_cols=85 Identities=22% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++++||..+ +..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346799999999999999999999999999999999888888899999999999999999999988 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987544
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=125.96 Aligned_cols=85 Identities=29% Similarity=0.372 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCC---CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTN---QLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~---~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
+.++|||+|||+++++++|+++|++||.|..+.|..+.. +++++|||||+|.+.+++++||..+ +..|+|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 578999999999999999999999999999999988766 4578999999999999999999998 999999999999
Q ss_pred EccCCcccC
Q 037989 421 QKKGKLNCL 429 (432)
Q Consensus 421 ~ar~~~~~~ 429 (432)
+++++....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998765533
No 40
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=125.33 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....++|||+|||+++++++|+++|++||.|..|.|+.+..+|+++|||||+|.+.+++++||.. ++.|+|+.|+|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 44678999999999999999999999999999999988888899999999999999999999995 78899999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 876553
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=5.4e-16 Score=130.68 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
..+|||+|||+++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.+++++||+.+ +..|+||.|+|+++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999998775 347899999999999999999998 9999999999999876
Q ss_pred Cc
Q 037989 425 KL 426 (432)
Q Consensus 425 ~~ 426 (432)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=127.36 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...+.++|||+|||+++++++|+++|++||.|..+.|..+ ++..+|||||+|.+.+++.+||..+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3447899999999999999999999999999999998766 7788999999999999999999988 999999999999
Q ss_pred EccCCcccC
Q 037989 421 QKKGKLNCL 429 (432)
Q Consensus 421 ~ar~~~~~~ 429 (432)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998765543
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=1e-15 Score=126.32 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC---eEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD---RKVY 418 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G---r~l~ 418 (432)
....++|||+|||+++++++|+++|++||.|..+.|..+. +|+++|||||+|.+.+++.+||+.+ +..|.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3468999999999999999999999999999999997776 6888999999999999999999988 888887 9999
Q ss_pred EEEccCCcccCC
Q 037989 419 VEQKKGKLNCLR 430 (432)
Q Consensus 419 Ve~ar~~~~~~r 430 (432)
|++++++....+
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999988665443
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=6.8e-16 Score=125.44 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999888788899999999999999999999988 9999999999999987
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=127.76 Aligned_cols=86 Identities=26% Similarity=0.421 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..+.++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999999888778889999999999999999999888 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 46
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=127.82 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....++|||+|||+++++++|+++|++||.|..|.|+.+..+++++|||||+|.+.+++++||...+..|+|+.|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45679999999999999999999999999999999988888889999999999999999999999888999999999999
Q ss_pred cCCcccC
Q 037989 423 KGKLNCL 429 (432)
Q Consensus 423 r~~~~~~ 429 (432)
+++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 8765543
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-16 Score=127.99 Aligned_cols=87 Identities=17% Similarity=0.345 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-------CCeeCCe
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-------PITFGDR 415 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-------~~~i~Gr 415 (432)
....++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+++.+||..+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 346789999999999999999999999999999999888888899999999999999999999976 6789999
Q ss_pred EEEEEEccCCcccC
Q 037989 416 KVYVEQKKGKLNCL 429 (432)
Q Consensus 416 ~l~Ve~ar~~~~~~ 429 (432)
.|+|++++++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998865543
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=128.15 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC--eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CC----eeCCeE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGP--IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PI----TFGDRK 416 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~--I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~----~i~Gr~ 416 (432)
..-.+|||+|||+++|+++|+++|++||. +..++++.++.+|+++|||||+|.+.+++++||+.+ +. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35688999999999999999999999996 567888788888999999999999999999999987 54 699999
Q ss_pred EEEEEccC
Q 037989 417 VYVEQKKG 424 (432)
Q Consensus 417 l~Ve~ar~ 424 (432)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 49
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=9.8e-16 Score=122.31 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
+.++|||+|||+++++++|+++|++||.|..+.+..+..+++++|||||+|.+.+++++|+ .+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999888888899999999999999999999 77 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=127.46 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQ 421 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ 421 (432)
.....++|||+|||+++++++|+++|++||.|..|.|..+..+++++|||||+|.+.+++++||+.+...|+|+.|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567999999999999999999999999999999998888888999999999999999999999993399999999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++.+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9653
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.7e-16 Score=128.56 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999888788899999999999999999999988 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87643
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=1e-16 Score=131.72 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCC------CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC-eE
Q 037989 345 KNPVIFVANLPM------DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD-RK 416 (432)
Q Consensus 345 ~~~~vfV~NLp~------~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G-r~ 416 (432)
.+++|||+|||+ ++++++|+++|++||.|..+.|+.+..+|+++|||||+|.+.+++++||+.+ +..|+| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999988999999999999999999999988 999999 99
Q ss_pred EEEEEccCCcc
Q 037989 417 VYVEQKKGKLN 427 (432)
Q Consensus 417 l~Ve~ar~~~~ 427 (432)
|+|.+++++.+
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 53
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=125.60 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC-CCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ-LRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~-g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...++|||+|||+++++++|+++|++|| |..+.|+.+..+ ++++|||||+|.+.+++++|| .+ +..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999999887776 889999999999999999999 77 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=127.92 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35789999999999999999999999999999999888888999999999999999999999987 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=126.60 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee-CCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIR-TNQLRPNCFSFVEFESISSMQNALKAS--PITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~-~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~V 419 (432)
....++|||+|||+++++++|+++|++||.|..|.|..+ ..+++++|||||+|.+.+++++||..+ +..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446799999999999999999999999999999998777 668889999999999999999999986 89999999999
Q ss_pred EEccCCccc
Q 037989 420 EQKKGKLNC 428 (432)
Q Consensus 420 e~ar~~~~~ 428 (432)
++++++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=128.48 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--------EEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIK--------ANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG 413 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~--------~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~ 413 (432)
....++|||+|||+++++++|+++|++||.|. .+.|..+..+++++|||||+|.+.+++++||+.+ +..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45689999999999999999999999999998 6888888788899999999999999999999987 99999
Q ss_pred CeEEEEEEccCCcccC
Q 037989 414 DRKVYVEQKKGKLNCL 429 (432)
Q Consensus 414 Gr~l~Ve~ar~~~~~~ 429 (432)
|+.|+|++++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999998865543
No 57
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.3e-16 Score=128.40 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFG--PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
++|||+|||+++++++|+++|++|| .|..+.++.+..+|+++|||||+|.+.+++++||+.+ +..|+||.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999888889999999999999999999999998 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 58
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=6.2e-16 Score=127.80 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee---CCeEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF---GDRKVY 418 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i---~Gr~l~ 418 (432)
....++|||+|||+++++++|+++|++||.|..+.|+.+..+++++|||||+|.+.+++.+||+.+ +..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 446799999999999999999999999999999999888888899999999999999999999988 8776 889999
Q ss_pred EEEccCCcccC
Q 037989 419 VEQKKGKLNCL 429 (432)
Q Consensus 419 Ve~ar~~~~~~ 429 (432)
|++++++.+..
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998765543
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=122.84 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
.....++|||+|||+++++++|+++|++||.|..+.|..+.. .++|||||+|.+.+++++||..+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344679999999999999999999999999999998876543 37899999999999999999988 999999999999
Q ss_pred EccCCccc
Q 037989 421 QKKGKLNC 428 (432)
Q Consensus 421 ~ar~~~~~ 428 (432)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876543
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=124.97 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999988888888888899999999999999999999999 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+.+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8654
No 61
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1e-15 Score=130.23 Aligned_cols=84 Identities=21% Similarity=0.361 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
+.++|||+|||+++++++|+++|++||.|..+.|..+..+|+++|||||+|.+.+++.+|| .+ +..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999888888999999999999999999999 67 999999999999998
Q ss_pred CCcccC
Q 037989 424 GKLNCL 429 (432)
Q Consensus 424 ~~~~~~ 429 (432)
++....
T Consensus 114 ~~~~~~ 119 (124)
T 2jwn_A 114 TNMPGI 119 (124)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 755443
No 62
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=124.96 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCe
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKA--------NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDR 415 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr 415 (432)
..++|||+|||+++++++|+++|++||.|.. +.+..++.+|+++|||||+|.+.+++++||+.+ +..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5699999999999999999999999999999 999888888999999999999999999999987 9999999
Q ss_pred EEEEEEcc
Q 037989 416 KVYVEQKK 423 (432)
Q Consensus 416 ~l~Ve~ar 423 (432)
.|+|++++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 63
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=129.06 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+|||+++++++|+++|++||.|..|.|+.+..+++++|||||+|.+.+++++||...+..|+|+.|+|+++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 46999999999999999999999999999999998888888999999999999999999999888899999999999988
Q ss_pred CcccC
Q 037989 425 KLNCL 429 (432)
Q Consensus 425 ~~~~~ 429 (432)
+....
T Consensus 106 ~~~~~ 110 (116)
T 1x4b_A 106 REESG 110 (116)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 75543
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-15 Score=122.93 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 342 QAAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
.....++|||+|||+++++++|+++|++||.|..|.|..+.. .++|||||+|.+.+++++||..+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345679999999999999999999999999999998876643 36899999999999999999988 999999999999
Q ss_pred EccCCcc
Q 037989 421 QKKGKLN 427 (432)
Q Consensus 421 ~ar~~~~ 427 (432)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987544
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=125.79 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCe-eCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVK-FGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PIT-FGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~-fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~-i~Gr~l~Ve 420 (432)
...++|||+|||+++++++|+++|++ ||.|..+.|..+. +|+++|||||+|.+.+++.+||+.+ +.. |+|+.|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35789999999999999999999999 9999999998887 8889999999999999999999998 888 999999999
Q ss_pred EccCCcccC
Q 037989 421 QKKGKLNCL 429 (432)
Q Consensus 421 ~ar~~~~~~ 429 (432)
+++++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765443
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=123.59 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeE-EEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeE----E
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIK-ANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRK----V 417 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~-~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~----l 417 (432)
...++|||+|||+++++++|+++|++||.|. .+.|..+..+++++|||||+|.+.+++++||+.+ +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3579999999999999999999999999999 9999888888999999999999999999999998 99999998 9
Q ss_pred EEEEccCCcc
Q 037989 418 YVEQKKGKLN 427 (432)
Q Consensus 418 ~Ve~ar~~~~ 427 (432)
+|+++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987543
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=121.20 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCC-CccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLR-PNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~-~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.+++++|++.+ +..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999888776655 8999999999999999999987 99999999999999
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
++.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=123.42 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIK----SVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
..++++|||+|||+++++++|+ ++|++||.|..+.|..+..+ +|||||+|.+.+++++||+.+ +..|+||.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3467999999999999999999 99999999999988766543 789999999999999999988 999999999
Q ss_pred EEEEccCCcc
Q 037989 418 YVEQKKGKLN 427 (432)
Q Consensus 418 ~Ve~ar~~~~ 427 (432)
+|++++++..
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 69
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.4e-16 Score=130.60 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
+.++|||+|||+++++++|+++|++||.|..|.|+.+..+|+++|||||+|.+.+++++|| .+ +..|+|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 5689999999999999999999999999999999888888899999999999999999999 66 999999999999997
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=120.04 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++| .|..+.|+.+ .+|+++|||||+|.+.+++++||. + +..|+||.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467999999999999999999999999 8999999777 778899999999999999999999 8 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++...
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9887543
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=122.57 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.|..+.. ++++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34579999999999999999999999999999999977765 888999999999999999999987 9999999999998
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 72
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=127.49 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. +|+++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999997776 7889999999999999999999999 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 73
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=133.90 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CC----eeCCeE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKA--NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PI----TFGDRK 416 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~--~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~----~i~Gr~ 416 (432)
...++|||+|||+++++++|+++|++||.|.. |.|+.+..+|+++|||||+|.+. ++.+||..+ +. .|+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999976 88988888899999999999999 999999998 88 999999
Q ss_pred EEEEEccCCcc
Q 037989 417 VYVEQKKGKLN 427 (432)
Q Consensus 417 l~Ve~ar~~~~ 427 (432)
|+|++++++.+
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.7e-16 Score=126.94 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....++|||+|||+++++++|+++|++||.|..|.|+.+.. |+++|||||+|.+.+++++||...++.|+|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999988776 88999999999999999999993399999999999987
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
+.
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.2e-15 Score=123.35 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.|..+. +++++|||||+|.+.+++++||..+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4467999999999999999999999999999999997776 4888999999999999999999988 9999999999999
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
++.
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 76
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.6e-15 Score=121.39 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..|.|.. +++++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3579999999999999999999999999999988733 3457899999999999999999888 99999999999999
Q ss_pred cCCcccC
Q 037989 423 KGKLNCL 429 (432)
Q Consensus 423 r~~~~~~ 429 (432)
+++.+..
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4a_A 97 RSGRGTG 103 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 8865543
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=6.9e-16 Score=126.63 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRT-NQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~-~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||+++++++|+++|++|| |..+.|..+. .+|+++|||||+|.+.+++.+|| .+ +..|+|+.|+|+++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 579999999999999999999999999 9999987776 57889999999999999999999 77 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8764
No 78
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.5e-15 Score=130.77 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..|.|..+..+|+.+|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999888888899999999999999999999988 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8753
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=125.32 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
....++|||+|||+++++++|+++|++||.|..+.|+. .+|||||+|.+.+++.+||+.+ +..|+||.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34679999999999999999999999999999998853 3799999999999999999965 47899999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
++++++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99987644
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=125.36 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||.++++++|+++|++||.|..+.+..+. ++++|||||+|.+.+++++|++.+ +..|+|+.|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4467999999999999999999999999999998886654 348999999999999999999988 9999999999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 81
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=7e-15 Score=130.18 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35799999999999999999999999999999999888888889999999999999999999998 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86433
No 82
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=3.2e-15 Score=120.16 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.+.. .+++++|||||+|.+.+++++||+.+ +..|+|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 579999999999999999999999999999998865 46788999999999999999999988 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7644
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-15 Score=120.90 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|. +..+ .+++.+|||||+|.+.+++++||..+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44689999999999999999999999999883 4333 67788999999999999999999998 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++.+.
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9876553
No 84
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=124.42 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4589999999999999999999999999999999888888899999999999999999999998 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7543
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=5.1e-15 Score=131.05 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.|..+..+|+++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999888788999999999999999999999998 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87544
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=7.6e-15 Score=126.96 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346799999999999999999999999999999999888788899999999999999999999998 9999999999987
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=120.87 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC-----eEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD-----RKVY 418 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G-----r~l~ 418 (432)
..++|||+|||+++++++|+++|++||.|..|.|..+ |||||+|.+.+++++||+.+ +..|+| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5799999999999999999999999999999888543 89999999999999999999 999999 9999
Q ss_pred EEEccCCcccCC
Q 037989 419 VEQKKGKLNCLR 430 (432)
Q Consensus 419 Ve~ar~~~~~~r 430 (432)
|++++++.+..+
T Consensus 87 V~~a~~~~~~~~ 98 (108)
T 1x4c_A 87 VKVDGPRSPSYG 98 (108)
T ss_dssp EEESSCCSCCCC
T ss_pred EEeCCCCCCCCC
Confidence 999987655443
No 88
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.9e-15 Score=121.07 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
....++|||+|||+++++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|++.+ +..|+||.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 34678999999999999999999999999999987642 3799999999999999999975 67899999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
++++.+.-
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987543
No 89
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5e-15 Score=122.40 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKA-NGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~-~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|.. +.|..+ .+|+++|||||+|.+.+++++||...+..|+||.|+|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 346799999999999999999999999999987 777666 778999999999999999999999889999999999988
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8653
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.2e-15 Score=127.49 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.++++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+++++||+.+ +..|+|+.|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 35799999999999999999999999999999999888778899999999999999999999988 99999999999999
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
+++
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.8e-15 Score=122.44 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.++.+..+++.+|||||+|.+.+++++||+.+ +..|+||.|+|+.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999998888888888899999999999999999999987 999999999999875
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=7.2e-15 Score=121.55 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.|..+. +|+++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357999999999999999999999999999999998777 8889999999999999999999988 99999999999987
Q ss_pred c
Q 037989 423 K 423 (432)
Q Consensus 423 r 423 (432)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=122.75 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCe-
Q 037989 344 AKNPVIFVANLPMDV------TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDR- 415 (432)
Q Consensus 344 ~~~~~vfV~NLp~~v------te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr- 415 (432)
...++|||+|||+.+ ++++|+++|++||.|..+.|. ..+|+++|||||+|.+.+++++||..+ |..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999998875 467889999999999999999999998 9999998
Q ss_pred EEEEEEccCCccc
Q 037989 416 KVYVEQKKGKLNC 428 (432)
Q Consensus 416 ~l~Ve~ar~~~~~ 428 (432)
.|+|++++...+.
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999875543
No 94
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-15 Score=118.15 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+|++.+...|+|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999988877889999999999999999999999998899999999886
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=1.4e-15 Score=117.69 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 348 ~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
+|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++|++..+..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999888877889999999999999999999983399999999999874
No 96
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=126.04 Aligned_cols=82 Identities=10% Similarity=0.137 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCe-EEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPI-KANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I-~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ 421 (432)
..+.++|||+|||+++++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.+++++||+..+..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467999999999999999999999999999 788887777 88999999999999999999999888899999999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.58 E-value=6.9e-15 Score=131.70 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+.+|++||.|..|.|..+..+|.++|||||+|.+.+.+.+||..+ +..|+|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999888888999999999999999999999988 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
+++.
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 7643
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=120.39 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 344 AKNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 344 ~~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
...++|||+|||+ ++++++|+++|++||.|..+.|+. .+|||||+|++.++|.+||+.+ +..|+||.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3679999999999 999999999999999999988742 3589999999999999999986 45699999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
++++.+.+
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986544
No 99
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=6.8e-15 Score=122.70 Aligned_cols=78 Identities=31% Similarity=0.493 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.+++.+|+..+ +..|+|+.|+|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999998874 689999999999999999988 9999999999999
Q ss_pred ccCCccc
Q 037989 422 KKGKLNC 428 (432)
Q Consensus 422 ar~~~~~ 428 (432)
++++...
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9886554
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=123.29 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHH---HHhhcCCCeEEEEEEeeCCCC---CCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 342 QAAKNPVIFVANLPMDVTADQIK---SVFVKFGPIKANGIRIRTNQL---RPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~vte~~L~---~~F~~fG~I~~~~v~~~~~~g---~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
.....++|||+|||+++++++|+ ++|++||.|..+.|..+..++ +++|||||+|.+.+++++||+.+ +..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999987766543 45699999999999999999998 999999
Q ss_pred eEEEEEEccCCc
Q 037989 415 RKVYVEQKKGKL 426 (432)
Q Consensus 415 r~l~Ve~ar~~~ 426 (432)
+.|+|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998875
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=118.90 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++|+ .+.++.+..+++++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34679999999999999999999999886 4556677778889999999999999999999988 9999999999999
Q ss_pred ccCCcccCC
Q 037989 422 KKGKLNCLR 430 (432)
Q Consensus 422 ar~~~~~~r 430 (432)
++++....+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2fc8_A 89 AKPKGEGGS 97 (102)
T ss_dssp CCCCCSSSC
T ss_pred ecCCCCCCC
Confidence 998765443
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-15 Score=120.88 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++||+.+ +..|+|+.|++.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 5789999999999999999999999999999999888888899999999999999999999998 999999988876654
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=118.61 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-C--CeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-P--ITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~--~~i~Gr~l~Ve 420 (432)
..+++|||+|||+++++++|+++|++||.|..+.++ +.+|||||+|++.++|.+|++.+ + ..|+||.|+|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 357899999999999999999999999999998774 25789999999999999999987 4 45899999999
Q ss_pred EccCCc
Q 037989 421 QKKGKL 426 (432)
Q Consensus 421 ~ar~~~ 426 (432)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998753
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=6.2e-15 Score=123.80 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFG-PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+++|||+|||+++++++|+++|++|| .|..+.|.. ++++|||||+|.+.+++++||+.+ +..|+||.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 898877632 247899999999999999999998 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+..+.
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 86544
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.1e-15 Score=121.62 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEE-eeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGP-IKANGIR-IRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~-I~~~~v~-~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
+.++|||+|||+++++++|+++|.+||. |..+.+. .+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999886 56667789999999999999999999986 37899999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987644
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=121.36 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKK 423 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar 423 (432)
...++|||+|||+++++++|+++|++||.+ .+.|+++. +++++|||||+|.+.+++++||+..+..|+||.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 457999999999999999999999999955 88888776 7899999999999999999999644999999999999887
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
+..+
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 107
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=124.78 Aligned_cols=85 Identities=24% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+.++..+++++|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35799999999999999999999999999954433333347788999999999999999999998 99999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 108
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.5e-15 Score=117.41 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 348 VIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 348 ~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
+|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++||+..+..|+|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999888878889999999999999999999998799999999999874
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=1.7e-14 Score=117.77 Aligned_cols=76 Identities=22% Similarity=0.464 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...++|||+|||+ ++++++|+++|++||.|..+.+ .+|||||+|.+.+++.+||..+ +..|+|++|+|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3579999999998 9999999999999999999877 3789999999999999999988 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++.+
T Consensus 92 a~~~~r 97 (97)
T 2xnq_A 92 SSSNAR 97 (97)
T ss_dssp CCCCC-
T ss_pred cCCCCC
Confidence 987653
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.2e-15 Score=122.32 Aligned_cols=80 Identities=26% Similarity=0.421 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+ +.+|+..+ +..|+|+.|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999888888899999999999999 99999998 99999999999999875
Q ss_pred cc
Q 037989 426 LN 427 (432)
Q Consensus 426 ~~ 427 (432)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=3.2e-15 Score=129.73 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.|..+..+++++|||||+|.+.+++++||..+ +..|+|+.|+|++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999998877778899999999999999999999998 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 126 ~~~~ 129 (135)
T 2lea_A 126 YGRP 129 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=4e-14 Score=120.43 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+++|++||.|..+.|..+. +|+++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 467999999999999999999999999999999998777 8889999999999999999999988 99999999999999
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7643
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3e-14 Score=116.27 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcC--CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKF--GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~f--G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...++|||+|||+++++++|+++|++| |.|..+.+ .+|||||+|.+.+++.+||..+ +..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357999999999999999999999999 99988765 3679999999999999999988 999999999999
Q ss_pred EccCCcccC
Q 037989 421 QKKGKLNCL 429 (432)
Q Consensus 421 ~ar~~~~~~ 429 (432)
+++++.+..
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2cpd_A 85 LAKPVDKDS 93 (99)
T ss_dssp CCCCCCCCC
T ss_pred ECCCCCCCC
Confidence 999866543
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=8.3e-15 Score=124.07 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGP---IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve 420 (432)
.+.++|||+|||+++++++|+++|++||. |..+.|..+.. |+++|||||+|.+.+++++||+..+..|+||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 46799999999999999999999999999 88899877766 889999999999999999999944999999999999
Q ss_pred EccC
Q 037989 421 QKKG 424 (432)
Q Consensus 421 ~ar~ 424 (432)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.2e-15 Score=121.76 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+++|||+|||.++++++|+++|++||.|..+.+. +++|||||+|.+.+++.+||..+ +..|+|+.|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 56899999999999999999999999999998874 46799999999999999999988 999999999999998
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=119.10 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~Ve 420 (432)
...++|||+|||+++++++|+++|++||.|..+.++. .+|||||+|.+.++|.+|++.+ +..|+|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3568999999999999999999999999999987642 3799999999999999999976 456999999999
Q ss_pred EccCCc
Q 037989 421 QKKGKL 426 (432)
Q Consensus 421 ~ar~~~ 426 (432)
+++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998754
No 117
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-15 Score=127.01 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.+++++||. + +..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467999999999999999999999999999886676777888999999999999999999999 7 9999999999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=114.99 Aligned_cols=79 Identities=18% Similarity=0.381 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3467999999999999999999999999999998873 459999999999999999988 9999999999999
Q ss_pred ccCCcccC
Q 037989 422 KKGKLNCL 429 (432)
Q Consensus 422 ar~~~~~~ 429 (432)
++++.+..
T Consensus 79 a~~~~~~~ 86 (92)
T 2dgt_A 79 STSRLRTA 86 (92)
T ss_dssp SSCCCSCC
T ss_pred ccCCCCCC
Confidence 98765543
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-15 Score=124.02 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|.. .++++..+|+++|||||+|.+.+++++||+ + +..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5689999999999999999999999999877 555666678899999999999999999999 7 999999999999998
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=125.38 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIK----SVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
.+++|||+||++.+++++|+ ++|++||.|..|.+. .+++++|||||+|.+.++|..||..+ |..|+|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46899999999999999876 699999999887652 35678999999999999999999999 99999999999
Q ss_pred EEccCCcc
Q 037989 420 EQKKGKLN 427 (432)
Q Consensus 420 e~ar~~~~ 427 (432)
++++.+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987654
No 121
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=122.74 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~Ve 420 (432)
..+++|||+|||+++++++|+++|++||.|..+.|+. .+|||||+|++.++|.+||+.+ +..|+|+.|+|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 4578999999999999999999999999999988753 2799999999999999999976 578999999999
Q ss_pred EccCCcc
Q 037989 421 QKKGKLN 427 (432)
Q Consensus 421 ~ar~~~~ 427 (432)
+++.+.-
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987543
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=119.70 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35799999999999999999999999999999887532 789999999999999999988 99999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 886553
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=117.12 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 666543 57899999999999999999998 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88643
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-14 Score=116.41 Aligned_cols=73 Identities=10% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
....||||||++.+++++|+++|.+||+|..+++.+ ++|||||+|.+.++|.+|++.+ +..++||.|+|+.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 368899999999999999999999999999998843 6899999999999999999999 999999999999884
No 125
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.6e-15 Score=122.52 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
+.++|||+|||+++++++|+++|++| .|..+.|+++.. |+++|||||+|.+.+++++||...+..|+||.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 46899999999999999999999999 888999877765 8899999999999999999995449999999999988764
No 126
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=114.87 Aligned_cols=77 Identities=23% Similarity=0.437 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 357999999999999999999999999999998874 589999999999999999988 99999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=120.94 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC---CCeeCCeEEEE
Q 037989 344 AKNPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS---PITFGDRKVYV 419 (432)
Q Consensus 344 ~~~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~---~~~i~Gr~l~V 419 (432)
..+++|||+|||++ +++++|+++|++||.|..+.|. +.+|||||+|.+.++|.+||+.+ +..|+||.|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35789999999998 9999999999999999998873 35799999999999999999976 56799999999
Q ss_pred EEccCCccc
Q 037989 420 EQKKGKLNC 428 (432)
Q Consensus 420 e~ar~~~~~ 428 (432)
++++.+.+.
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999876553
No 128
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=6.4e-15 Score=120.89 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+. +|+++|||||+|.+.+++++||. .+..|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 46899999999999999999999999999999998887 88899999999999999999999 88999999999998875
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+.+
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 129
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.3e-14 Score=119.01 Aligned_cols=83 Identities=11% Similarity=0.208 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee--------C
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF--------G 413 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i--------~ 413 (432)
..+.++|||+|||+++++++|+++|++||.|..+.|..+. ++.++|||||+|.+.+++.+||..+ +..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467999999999999999999999999999999998877 7889999999999999999999988 8888 5
Q ss_pred CeEEEEEEccCCc
Q 037989 414 DRKVYVEQKKGKL 426 (432)
Q Consensus 414 Gr~l~Ve~ar~~~ 426 (432)
|+.|.|.+++++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999998753
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=113.73 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467999999999999999999999999999998873 459999999999999999988 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=7.4e-15 Score=115.56 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCe-EE
Q 037989 346 NPVIFVANLPMDV------TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDR-KV 417 (432)
Q Consensus 346 ~~~vfV~NLp~~v------te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr-~l 417 (432)
+++|||+|||+.+ ++++|+++|++||.|..+.+. ..+|+++|||||+|.+.+++++||+.+ |..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999998775 467889999999999999999999998 9999999 88
Q ss_pred EE
Q 037989 418 YV 419 (432)
Q Consensus 418 ~V 419 (432)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 132
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=111.60 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFGDRKVYVE 420 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve 420 (432)
....++|||+|||.++++++|+++|++||.|..+.+.. .+|||||+|.+.+++.+|++.+ +..|+|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34578999999999999999999999999999988753 4799999999999999999975 889999999999
Q ss_pred Ecc
Q 037989 421 QKK 423 (432)
Q Consensus 421 ~ar 423 (432)
++|
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=117.89 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.+++.+||..+ +..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999988754 345678999999999999999999998 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++.+
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988654
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-15 Score=123.82 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGP---IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYV 419 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~V 419 (432)
..+.++|||+|||+++++++|+++|++||. |..+.|..+.. |+++|||||+|.+.+++++||...+..|+||.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 346899999999999999999999999998 88888877766 89999999999999999999993399999999999
Q ss_pred EEccCC
Q 037989 420 EQKKGK 425 (432)
Q Consensus 420 e~ar~~ 425 (432)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-14 Score=115.24 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC--CeEEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG--DRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~--Gr~l~Ve 420 (432)
...++|||+|||+++++++|+++|++||.|..+.+.. .+|||||+|.+.+++++||+.+ +..|+ |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 3568999999999999999999999999999987732 2789999999999999999988 99999 9999999
Q ss_pred EccCCcc
Q 037989 421 QKKGKLN 427 (432)
Q Consensus 421 ~ar~~~~ 427 (432)
+++++.+
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998765
No 136
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=8.3e-15 Score=127.45 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGP---IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~---I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
.+.++|||+|||+++++++|+++|++||. |..+.|+.+.. |+++|||||+|.+.+++++||+ + +..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 46799999999999999999999999999 88898988776 8999999999999999999999 6 99999999999
Q ss_pred EEccC
Q 037989 420 EQKKG 424 (432)
Q Consensus 420 e~ar~ 424 (432)
..+..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98864
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.5e-14 Score=136.69 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFG--PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG--~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
..++|||+||++++++++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.+++++||+.+ +..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999999999889999999999999999999999998 9999999999998
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=115.80 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|++||.|..+.+. +.+|||||+|.+.+++.+||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3467899999999999999999999999999998774 24799999999999999999998 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987644
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=118.54 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=69.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.+++.+|++.+ +..|+|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999888544 6799999999999999999998 99999999999999875
Q ss_pred cc
Q 037989 426 LN 427 (432)
Q Consensus 426 ~~ 427 (432)
.+
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 140
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=2.6e-14 Score=114.92 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=62.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
....++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++++++ ....+.++|++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 346799999999999999999999999999999888542 689999999999998843 22255578999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 82 ~~k~~~ 87 (89)
T 3d2w_A 82 EPKHNK 87 (89)
T ss_dssp C-----
T ss_pred CCCCcC
Confidence 987653
No 141
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.52 E-value=1.3e-14 Score=129.35 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCcc-----ccc------ccc----cCCCeeecCCCCCcccee------ccHHHHHHHHhc
Q 037989 11 VDPQLVGNSFVEQYFKALHQYPE-----HLH------RFY----QDSSFLSRPGPDGVMTSI------TTMKEINDQILS 69 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY----~~~S~l~~~~~~g~~~~~------~g~~~I~~~~~s 69 (432)
.+..+.++.|++.||..||+.+. .|. ++| .+.|.++|+|. .+ .|.++|.++|..
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~ 97 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQ 97 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHh
Confidence 35678899999999999998887 888 888 78899999997 77 999999999999
Q ss_pred CCCCcceEEEeeeeeeeeCC-CcEEEEEEEEEeeCC-CCceeEEEEEeeee
Q 037989 70 LDYQNYQTEILTVDAQASYC-KGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ 118 (432)
Q Consensus 70 l~~~~~~~~I~s~d~q~s~~-~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~ 118 (432)
||.+ .|.|.++|||+.++ +.+||+|.|.|++++ .+++|.|+|.|..+
T Consensus 98 lP~S--qHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 98 TPLS--SHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp SCCE--EEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CCCc--ceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 9955 99999999999975 579999999999999 99999999999865
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.6e-16 Score=129.01 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKA--------NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~--------~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
.+.++|||+|||+++++++|+++|++||.|.. +.|..+..+++++|||||+|.+.+++++||..+ +..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 888777778889999999999999999999998 999999
Q ss_pred eEEEEEEccCCcc
Q 037989 415 RKVYVEQKKGKLN 427 (432)
Q Consensus 415 r~l~Ve~ar~~~~ 427 (432)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987654
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.4e-14 Score=117.47 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIK----SVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
..+++|||+|||+++++++|+ ++|++||.|..+.+. .+|.++|||||+|.+.+++.+|+..+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 357899999999999999999 999999999998764 24567899999999999999999988 9999999999
Q ss_pred EEEccCCcc
Q 037989 419 VEQKKGKLN 427 (432)
Q Consensus 419 Ve~ar~~~~ 427 (432)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999988654
No 144
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=5.9e-14 Score=115.47 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.+++++||+.+ +..|+|+.|+|++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 56899999999999999999999999999998773 469999999999999999988 999999999999997
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
++..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6543
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=5.1e-14 Score=117.25 Aligned_cols=72 Identities=15% Similarity=0.374 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||++ +++++|+++|++||.|..|.+ .+|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999877 4789999999999999999988 99999999999999
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
+.
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-13 Score=111.77 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|| ++++++|+++|++||.|..|.|. +.+|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46799999996 89999999999999999998772 56799999999999999999998 99999999999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.3e-14 Score=115.56 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-C-CeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGP-IKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-P-ITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~-I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~-~~i~Gr~l~Ve~ 421 (432)
..++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.+++.+||+.+ + ..|+|+.|+|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5689999999999999999999999999 655544 24789999999999999999988 8 899999999999
Q ss_pred ccCCcccC
Q 037989 422 KKGKLNCL 429 (432)
Q Consensus 422 ar~~~~~~ 429 (432)
++++....
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 98765543
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.8e-14 Score=112.48 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..| +++..+|+ ||||+|.+.+++++||. + +..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999986 45655544 99999999999999999 8 999999999999887
Q ss_pred CCcc
Q 037989 424 GKLN 427 (432)
Q Consensus 424 ~~~~ 427 (432)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6544
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=4.9e-14 Score=123.89 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35799999999999999999999999999999888543 5799999999999999999988 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++.+
T Consensus 146 ~~~~r 150 (150)
T 2i2y_A 146 NGEKR 150 (150)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88653
No 150
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.2e-14 Score=115.60 Aligned_cols=77 Identities=22% Similarity=0.482 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 343 AAKNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 343 ~~~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
....++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.+++.+||..+ +..|+|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34679999999998 99999999999999999998872 689999999999999999988 999999999999
Q ss_pred EccCCcc
Q 037989 421 QKKGKLN 427 (432)
Q Consensus 421 ~ar~~~~ 427 (432)
+++++.+
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976543
No 151
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=2.2e-14 Score=123.16 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeE--EEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIK--ANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~--~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||+++++++|+++|++| .|. .|.|+.+.. |+++|||||+|.+.+++++||+.++..|+||.|+|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 56889999999999999999999999 566 788877766 89999999999999999999997799999999999887
Q ss_pred cC
Q 037989 423 KG 424 (432)
Q Consensus 423 r~ 424 (432)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=123.40 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCe----EEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPI----KANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYV 419 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I----~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~V 419 (432)
.+.++|||+|||+++++++|+++|++||.| ..+.|+.+ .+|+++|||||+|.+.+++++||+..+..|+||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999986 57888776 5789999999999999999999998788999999999
Q ss_pred EEccC
Q 037989 420 EQKKG 424 (432)
Q Consensus 420 e~ar~ 424 (432)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87754
No 153
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=5.2e-14 Score=117.97 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+++|||+|||+++++++|+++|++||.|..+.+..+ +.++|||||+|.+.+++.+||..+ |..|+|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4689999999999999999999999999999888643 456899999999999999999988 999999999999998
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
++.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=1.1e-13 Score=125.73 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEcc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKK 423 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar 423 (432)
...++|||+|||+++++++|+++|++||.|..|.|+.+..+|+++|||||+|.+.+++.+||...+..|+|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 46799999999999999999999999999999999888888899999999999999999999988999999999999987
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.+
T Consensus 91 ~~ 92 (196)
T 1l3k_A 91 SR 92 (196)
T ss_dssp C-
T ss_pred Cc
Confidence 64
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=117.99 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..|.|. ..+|||||+|.+.+++++||+.+ +..|+|+.|+|++++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999987763 26789999999999999999998 999999999999997
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.+
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.7e-13 Score=127.41 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..|.|+.+..+++++|||||+|.+.+++.+||+.+ +..++|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 3579999999999999999999999999999999888888999999999999999999999998 999999999999886
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=2.4e-13 Score=119.77 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+|++.+ +..++|+.|+|.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 489999999999999999999999999999999888778899999999999999999999987 9999999999999986
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 158
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8e-14 Score=118.90 Aligned_cols=79 Identities=22% Similarity=0.166 Sum_probs=70.9
Q ss_pred CCEEEEcCC----CCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCC----H-HH---HHHHHH--hC-CC
Q 037989 346 NPVIFVANL----PMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES----I-SS---MQNALK--AS-PI 410 (432)
Q Consensus 346 ~~~vfV~NL----p~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~----~-~~---a~~Al~--~~-~~ 410 (432)
...|||+|| ++.+++.+|+++|+.||.|..|.++.|+.+|+++|||||+|.+ . ++ +.+|+. .+ +.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 9999999999999999999999999999999999999999995 3 22 788888 66 99
Q ss_pred eeCCeEEEEEEccC
Q 037989 411 TFGDRKVYVEQKKG 424 (432)
Q Consensus 411 ~i~Gr~l~Ve~ar~ 424 (432)
.|+||.|+|+..+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998775
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.8e-13 Score=119.16 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+|+..+ +..|+|+.|+|.+++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 5689999999999999999999999999999999888888899999999999999999999988 999999999999986
Q ss_pred C
Q 037989 424 G 424 (432)
Q Consensus 424 ~ 424 (432)
.
T Consensus 166 ~ 166 (166)
T 3md3_A 166 K 166 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=2e-13 Score=123.90 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+||..++..|+|+.|.|.++.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 35899999999999999999999999999999998888788999999999999999999999889999999999999987
Q ss_pred Ccc
Q 037989 425 KLN 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 183 k~~ 185 (196)
T 1l3k_A 183 KQE 185 (196)
T ss_dssp ---
T ss_pred hhH
Confidence 544
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=1.7e-13 Score=121.10 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++++|++.+ +..++|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3689999999999999999999999999999999888788889999999999999999999987 999999999999998
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
++.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=112.05 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEE-EEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANG-IRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~-v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||+++++++|+++|++||.|..++ ++.+..+ +.|||+|.+.+++++||..+ +..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999984 6554433 34999999999999999988 99999999999999
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 886
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=123.57 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEE------EEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKAN------GIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~------~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
..++|||+|||+++++++|+++|++||.|..+ .+.. ..+|+++|||||+|.+.+++.+||..+ +..|+|+.|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 46899999999999999999999999998764 1212 245788999999999999999999988 999999999
Q ss_pred EEEEccCC
Q 037989 418 YVEQKKGK 425 (432)
Q Consensus 418 ~Ve~ar~~ 425 (432)
+|++++++
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999764
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=2.6e-13 Score=121.25 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEEc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD--RKVYVEQK 422 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~a 422 (432)
..+|||+||++.+++++|+++|++||.|.++.|..+ ..+|||||+|.+.+++.+|++.+ |..|.| +.|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 478999999999999999999999999999887432 25789999999999999999999 999854 99999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98643
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=4.8e-13 Score=121.57 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+|++.+ +..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35799999999999999999999999999999999888778889999999999999999999988 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++.+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=3.6e-13 Score=138.81 Aligned_cols=82 Identities=26% Similarity=0.480 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+.+|++||.|..|.|+.+..+|+++|||||+|.+.++|.+||..| +..|+|+.|.|++++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4689999999999999999999999999999999888888999999999999999999999998 999999999999998
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
++.
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 643
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.7e-14 Score=111.02 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+|||+++++++|+++|++||.|..+.|..+ ++|||||+|.+.+++++++.. .+.++|++|+|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5699999999999999999999999999999887432 689999999999999764332 5567999999999987
Q ss_pred Cccc
Q 037989 425 KLNC 428 (432)
Q Consensus 425 ~~~~ 428 (432)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=3.6e-14 Score=123.90 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++|| |..+.|+++.. |+++|||||+|.+.+++++|| .+ +..|+||.|+|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999 66888877765 899999999999999999999 55 99999999999988
Q ss_pred cCCc
Q 037989 423 KGKL 426 (432)
Q Consensus 423 r~~~ 426 (432)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=3.1e-13 Score=124.54 Aligned_cols=85 Identities=27% Similarity=0.380 Sum_probs=78.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|.+++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4689999999999999999999999999999999888888899999999999999999999988 999999999999998
Q ss_pred CCcccC
Q 037989 424 GKLNCL 429 (432)
Q Consensus 424 ~~~~~~ 429 (432)
++....
T Consensus 204 ~~~~~~ 209 (216)
T 2qfj_A 204 TPPMPL 209 (216)
T ss_dssp SCSSTT
T ss_pred CCCCCC
Confidence 865443
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=114.67 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCC---CCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQ---LRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~---g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ 421 (432)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.+++++||+.+ ..++|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 568999999999999999999999999999 777666655 788999999999999999999998 347888777765
Q ss_pred cc
Q 037989 422 KK 423 (432)
Q Consensus 422 ar 423 (432)
.+
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 171
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=8.8e-14 Score=117.09 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeE-----EE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRK-----VY 418 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~-----l~ 418 (432)
..++|||+|||+++++++|+++|++||.|..|.|..+ |||||+|.+.+++++||+.+ +..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999887432 89999999999999999988 99999988 88
Q ss_pred EEEccCCcc
Q 037989 419 VEQKKGKLN 427 (432)
Q Consensus 419 Ve~ar~~~~ 427 (432)
|...+++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 888766443
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2.3e-13 Score=123.51 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..+++|||+|||+++++++|+++|++||.|..|.|..+. ++.++|||||+|.+.+++.+||+.+ +..|+|+.|+|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457999999999999999999999999999999997776 7889999999999999999999998 99999999999998
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 764
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=7.3e-13 Score=114.00 Aligned_cols=77 Identities=22% Similarity=0.192 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccE-EEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCF-SFVEFESISSMQNALKAS-PITFGD--RKVYVEQ 421 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gf-aFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~ 421 (432)
-..|||+||++.+++++|+++|++||.|..+.+..+ .+|| |||+|.+.+++++|++.+ |..|.| +.|+|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 467899999999999999999999999999977543 3577 999999999999999999 999977 9999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++.-
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 997644
No 174
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=2.2e-13 Score=108.83 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.+++++|++.+ +..|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99888773 47899999999999999999988 999999999999997
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.43 E-value=1.3e-13 Score=121.93 Aligned_cols=80 Identities=21% Similarity=0.426 Sum_probs=74.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccCC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKGK 425 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~~ 425 (432)
.++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+|++..+..|+|+.|.|.++++|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 56899999999999999999999999999999888877889999999999999999999983389999999999999886
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=5.5e-13 Score=122.63 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
..++|||+|||+++++++|+++|++||.|..+.|..+. +|+.+|||||+|.+.+++++||..++..|+|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999987664 47889999999999999999998888899999999999876
Q ss_pred C
Q 037989 425 K 425 (432)
Q Consensus 425 ~ 425 (432)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 177
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=5.7e-13 Score=118.34 Aligned_cols=77 Identities=25% Similarity=0.490 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+|++.+ +..|+|++|.|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 688999999999999999999999999999999888778899999999999999999999998 99999999999986
No 178
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.41 E-value=5.1e-13 Score=124.08 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++|||+|||+++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.+++.+||+.+ +..|+|+.|+|+++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4689999999999999999999999999999997775 347899999999999999999998 9999999999999976
Q ss_pred C
Q 037989 425 K 425 (432)
Q Consensus 425 ~ 425 (432)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=3.8e-13 Score=118.87 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEEEEccC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYVEQKKG 424 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~Ve~ar~ 424 (432)
+.++|||+|||+++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+||.. +..++|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999988878899999999999999999999996 6889999999998765
Q ss_pred C
Q 037989 425 K 425 (432)
Q Consensus 425 ~ 425 (432)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 180
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=9e-13 Score=104.44 Aligned_cols=70 Identities=26% Similarity=0.514 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKF----G-------PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
..++|||+|||+++++++|+++|++| | .|..+.+. +.+|||||+|.+.+++.+|| .+ +..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~------~~kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC------SSSSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec------CCCcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46899999999999999999999999 8 89887763 24799999999999999999 77 9999
Q ss_pred CCeEEEEEE
Q 037989 413 GDRKVYVEQ 421 (432)
Q Consensus 413 ~Gr~l~Ve~ 421 (432)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=1.3e-12 Score=111.60 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=66.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccE-EEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEEc
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCF-SFVEFESISSMQNALKAS-PITFGD--RKVYVEQK 422 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gf-aFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~a 422 (432)
..|||+||++.+++++|+++|++||.|..+.|.. + .|| |||+|.+.++|..|++.| |..|.| +.|+|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 5678999999999999999999999999998843 2 276 999999999999999999 999877 69999999
Q ss_pred cCCccc
Q 037989 423 KGKLNC 428 (432)
Q Consensus 423 r~~~~~ 428 (432)
+++...
T Consensus 100 k~~~l~ 105 (124)
T 2e5i_A 100 RPTRLN 105 (124)
T ss_dssp SCSCCC
T ss_pred cCCcce
Confidence 987543
No 182
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=9.6e-13 Score=115.72 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=71.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccCC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKGK 425 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~~ 425 (432)
++|||+|||+++++++|+++|++||.|..+.+..+. .++++|||||+|.+.+++.+|+..+ +..++|+.|+|.+++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999986665 4678999999999999999999888 99999999999998764
Q ss_pred c
Q 037989 426 L 426 (432)
Q Consensus 426 ~ 426 (432)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=9.1e-13 Score=121.38 Aligned_cols=81 Identities=25% Similarity=0.459 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+.++.+..+|+++|||||+|.+.+++.+||+.+ +..|+|+.|+|.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999999888778889999999999999999999987 999999999998876
Q ss_pred CC
Q 037989 424 GK 425 (432)
Q Consensus 424 ~~ 425 (432)
.+
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=2e-12 Score=119.89 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCC-CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLP-MDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp-~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
.++++|||+||+ +.+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++||+.+ |..|+|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999888432 4799999999999999999998 9999999999999
Q ss_pred ccC
Q 037989 422 KKG 424 (432)
Q Consensus 422 ar~ 424 (432)
++.
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=1.5e-12 Score=110.83 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.+++.+||..+ +..|+|+.|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35799999996 79999999999999999998773 46899999999999999999988 99999999999999
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
+++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87644
No 186
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.9e-12 Score=107.82 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCEEEE--cCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee-----CCeE
Q 037989 345 KNPVIFV--ANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF-----GDRK 416 (432)
Q Consensus 345 ~~~~vfV--~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i-----~Gr~ 416 (432)
..++||| +||++++++++|+++|++||.|..+.|. ..+|||||+|.+.++|++|++.+ |..| +|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~------~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC------TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3578999 7799999999999999999999987653 14789999999999999999999 9888 6899
Q ss_pred EEEEEccCC
Q 037989 417 VYVEQKKGK 425 (432)
Q Consensus 417 l~Ve~ar~~ 425 (432)
|+|.+++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998754
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.35 E-value=3.3e-12 Score=112.80 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC--eEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD--RKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G--r~l~Ve~ 421 (432)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.+++.+|++.+ +..|+| +.|+|++
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 4689999999999999999999999999999999888778889999999999999999999988 999977 9999987
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=103.78 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCcHHH----HHHHhhcC-CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 347 PVIFVANLPMDVTADQ----IKSVFVKF-GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~----L~~~F~~f-G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
+.|||+|||+++++++ |+++|++| |.|..+ ++ |||||.|.+.++|++|++.| |..+.||.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4499999999999988 55899999 599875 23 99999999999999999999 999999999999
Q ss_pred EccCCccc
Q 037989 421 QKKGKLNC 428 (432)
Q Consensus 421 ~ar~~~~~ 428 (432)
+++.++..
T Consensus 80 ~A~~~sd~ 87 (96)
T 2diu_A 80 FTPKNREL 87 (96)
T ss_dssp SSCCSCCC
T ss_pred ecCCCcce
Confidence 99987653
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=2.1e-12 Score=115.19 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
..++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.+++.+||..+ +..|+|+.|+|++++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46899999999999999999999999988754 456788999999999999999999988 999999999999998
Q ss_pred CCc
Q 037989 424 GKL 426 (432)
Q Consensus 424 ~~~ 426 (432)
+|+
T Consensus 173 ~k~ 175 (175)
T 1fje_B 173 EKG 175 (175)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.33 E-value=2.8e-12 Score=113.87 Aligned_cols=81 Identities=14% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC--CCccEEEEEeCCHHHHHHHHHhC-CCeeC---CeEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL--RPNCFSFVEFESISSMQNALKAS-PITFG---DRKVY 418 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g--~~~gfaFVeF~~~~~a~~Al~~~-~~~i~---Gr~l~ 418 (432)
+.++|||+|||+++++++|+++|++||.|..+.++.+..++ +++|||||+|.+.+++++|++.+ +..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999998887766 78999999999999999999988 76654 57788
Q ss_pred EEEccCC
Q 037989 419 VEQKKGK 425 (432)
Q Consensus 419 Ve~ar~~ 425 (432)
+..+..+
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8777643
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=1.5e-11 Score=118.47 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-CeEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DRKVYVE 420 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr~l~Ve 420 (432)
....++|||+|||.++++++|+++|++||.|..+.+..+ .+|||||+|.+.+++.+||+.+ +..|+ |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 346799999999999999999999999999999888532 2589999999999999999999 99999 9999999
Q ss_pred Ecc
Q 037989 421 QKK 423 (432)
Q Consensus 421 ~ar 423 (432)
++|
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 192
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=3.5e-12 Score=112.24 Aligned_cols=78 Identities=17% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeE--EEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRK--VYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~--l~Ve~ 421 (432)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+|++.+ |..|+|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3578999999999999999999999999999999888878889999999999999999999988 99999975 77776
Q ss_pred c
Q 037989 422 K 422 (432)
Q Consensus 422 a 422 (432)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.32 E-value=5.3e-12 Score=121.62 Aligned_cols=80 Identities=28% Similarity=0.431 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 344 AKNPVIFVANLPMDVTADQIK----SVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~----~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
...++|||+|||+++++++|+ ++|++||.|..|.+.. +|+++|||||+|.+.+++.+||+.+ +..|+|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 457999999999999999977 8999999999987743 5778999999999999999999998 9999999999
Q ss_pred EEEccCCc
Q 037989 419 VEQKKGKL 426 (432)
Q Consensus 419 Ve~ar~~~ 426 (432)
|++++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 194
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.31 E-value=1.3e-11 Score=102.37 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCC-----CCcHHHHHHHhhcCCCeEEEEEEeeCCC-CCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 345 KNPVIFVANLPM-----DVTADQIKSVFVKFGPIKANGIRIRTNQ-LRPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 345 ~~~~vfV~NLp~-----~vte~~L~~~F~~fG~I~~~~v~~~~~~-g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
..+.|+|+||.. +-++++|+++|++||.|..+.|..+..+ ++++|||||+|.+.++|.+|++.+ |..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 2368999999999999999999776543 578999999999999999999999 999999999
Q ss_pred EEEEccC
Q 037989 418 YVEQKKG 424 (432)
Q Consensus 418 ~Ve~ar~ 424 (432)
+|.+++.
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=6.2e-12 Score=111.63 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC---CeEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG---DRKVYVE 420 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~---Gr~l~Ve 420 (432)
..++|||+|||+++++++|+++|++||.|..+.+..+. +|+++|||||+|.+.+++.+||+.+ +..+. |+.|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46789999999999999999999999999999986664 5888999999999999999999998 76654 4999999
Q ss_pred Ec
Q 037989 421 QK 422 (432)
Q Consensus 421 ~a 422 (432)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.29 E-value=5.9e-12 Score=121.92 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 344 AKNPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTN-QLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 344 ~~~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~-~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
...++|||+|||+. +++++|+++|++||.|..+.|..+.. +|.++|||||+|.+.+++.+|| .+ +..|+|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35789999999999 99999999999999999998866654 4889999999999999999999 88 999999999999
Q ss_pred EccCCc
Q 037989 421 QKKGKL 426 (432)
Q Consensus 421 ~ar~~~ 426 (432)
++++|.
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998863
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.5e-11 Score=100.53 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCc-----------HHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCe
Q 037989 344 AKNPVIFVANLPMDVT-----------ADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PIT 411 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vt-----------e~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~ 411 (432)
...++|+|+||..... +++|+++|++||.|..+.| .+. .++|||||+|.+.+++.+||..+ +..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999954432 5799999999999999855 433 37899999999999999999999 999
Q ss_pred eCCeEEEEEEccCCccc
Q 037989 412 FGDRKVYVEQKKGKLNC 428 (432)
Q Consensus 412 i~Gr~l~Ve~ar~~~~~ 428 (432)
|+||.|+|++++++.+.
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999886554
No 198
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.26 E-value=1.6e-11 Score=118.34 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEccC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKKG 424 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar~ 424 (432)
.++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.+++.+|+..+ +..|+|+.|.|.++++
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 479999999999999999999999999999999888888999999999999999999999888 9999999999999976
Q ss_pred Cc
Q 037989 425 KL 426 (432)
Q Consensus 425 ~~ 426 (432)
+.
T Consensus 175 ~~ 176 (284)
T 3smz_A 175 GQ 176 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=8.2e-12 Score=117.21 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...++|||+|||+ ++++++|+++|++||.|..+.+..+. +|||||+|.+.+++++||+.+ +..|+|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3579999999999 99999999999999999998885432 789999999999999999987 9999999999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++.+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8754
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.26 E-value=6.5e-12 Score=121.14 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCC-cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 344 AKNPVIFVANLPMDV-TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 344 ~~~~~vfV~NLp~~v-te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
...++|||+|||+++ ++++|+++|++||.|..+.|..+. +|+++|||||+|.+.+++.+|+..+ |..|+|+.|+|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 357899999999995 999999999999999999986654 6888999999999999999999998 9999999999999
Q ss_pred ccCCcc
Q 037989 422 KKGKLN 427 (432)
Q Consensus 422 ar~~~~ 427 (432)
++++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 988654
No 201
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=9.9e-12 Score=117.78 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCC---------cHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee-
Q 037989 344 AKNPVIFVANLPMDV---------TADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF- 412 (432)
Q Consensus 344 ~~~~~vfV~NLp~~v---------te~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i- 412 (432)
...++|||+||+..+ ++++|+++|++||.|..+.|+. .+|||||.|.+.++|+.|+++| +..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 367999999999998 7999999999999999998852 5799999999999999999999 8888
Q ss_pred -----------CCeEEEEEEccCCcc
Q 037989 413 -----------GDRKVYVEQKKGKLN 427 (432)
Q Consensus 413 -----------~Gr~l~Ve~ar~~~~ 427 (432)
+|+.|.|++++.++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=2.7e-12 Score=114.49 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEE
Q 037989 343 AAKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQ 421 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ 421 (432)
....++|||+|||+++++++|+++|.+||.+..+ ++.+..+|+++|||||+|.+.+++.+||+ + +..|+|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3467999999999999999999999999987552 33444567889999999999999999996 6 9999999999999
Q ss_pred ccCCc
Q 037989 422 KKGKL 426 (432)
Q Consensus 422 ar~~~ 426 (432)
++++.
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87643
No 203
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.23 E-value=6.7e-12 Score=114.45 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPM-DVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~-~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
.+++|||+|||+ ++++++|+++|++||.|..|.+..+ .+|||||+|.+.+++.+||..+ +..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT-----CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 9999999999999999999877433 2789999999999999999987 99999999999998
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
+.+
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 204
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.21 E-value=5.3e-11 Score=105.09 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHccCc-----ccccccccCCCeeecCCCCCccceeccHHHHHHHHh-cCCCCcceEEEeeeeeee
Q 037989 13 PQLVGNSFVEQYFKALHQYP-----EHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQIL-SLDYQNYQTEILTVDAQA 86 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~-sl~~~~~~~~I~s~d~q~ 86 (432)
-.+.+..||++||..|+..+ ..|..|+...+.++++|. .+-+..+..++|. .++.+ +|+|+++|||-
T Consensus 15 ~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p~T--~hel~S~D~HV 87 (184)
T 1of5_B 15 QAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVVQT--QHALTGVDYHA 87 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSCCC--EEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCCCc--eEEEEeEEEEE
Confidence 35789999999999999988 789999888889999997 8888899999998 78855 99999999999
Q ss_pred eCC-CcEEEEEEEEEeeCC-CCceeEEEEEeeee
Q 037989 87 SYC-KGVLVLVTGYMSGKT-GKRRFSQSFFLAPQ 118 (432)
Q Consensus 87 s~~-~~vlV~V~G~l~~~~-~~~~F~qtF~L~p~ 118 (432)
+.+ |+|+|+|+|.|++++ .+-+|.++|+|.|+
T Consensus 88 Ingsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 88 IPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp ETTTTEEEEEEEEEEECC----------------
T ss_pred ECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 864 679999999999987 65799999999987
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.19 E-value=4.8e-11 Score=114.23 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 344 AKNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 344 ~~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
...++|||+|||+++++++|+++|++||.|..+.+. +.+|||||+|.+.+++.+||..+ +..|+|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 356899999999999999999999999999998773 35799999999999999999987 99999999999998
Q ss_pred cCC
Q 037989 423 KGK 425 (432)
Q Consensus 423 r~~ 425 (432)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 763
No 206
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=7.4e-11 Score=112.90 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC--CCeeC---CeEEEEE
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS--PITFG---DRKVYVE 420 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~--~~~i~---Gr~l~Ve 420 (432)
+++|||+|||+.+++++|+++|++||.|..+.|..+ .+|+++|||||+|.+.+++.+||..+ +..+. ||.|.|+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 578999999999999999999999999999999887 57889999999999999999999998 55554 8999999
Q ss_pred EccCC
Q 037989 421 QKKGK 425 (432)
Q Consensus 421 ~ar~~ 425 (432)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 88753
No 207
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.17 E-value=5.5e-11 Score=105.38 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKF----G-------PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
+.++|||+|||+++++++|+++|++| | .|..+.+ ++.+|||||+|.+.+++.+|| .+ +..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 6666554 346899999999999999999 66 9999
Q ss_pred CCeEEEEEEccCC
Q 037989 413 GDRKVYVEQKKGK 425 (432)
Q Consensus 413 ~Gr~l~Ve~ar~~ 425 (432)
+|+.|+|.+++..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999988654
No 208
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=4.1e-11 Score=115.94 Aligned_cols=82 Identities=7% Similarity=0.121 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFG-PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~a 422 (432)
..++|||+|||+++++++|+++|++|| .|..+.+..+.. |.++|||||+|.+.+++.+|+..+ +..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999998866554 778999999999999999999987 99999999999998
Q ss_pred cCCcc
Q 037989 423 KGKLN 427 (432)
Q Consensus 423 r~~~~ 427 (432)
.++..
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 209
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.16 E-value=7e-11 Score=107.13 Aligned_cols=74 Identities=24% Similarity=0.455 Sum_probs=64.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKF----G-------PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~f----G-------~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
..++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.+++++|| .+ +..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555444 456899999999999999999 66 9999
Q ss_pred CCeEEEEEEccCC
Q 037989 413 GDRKVYVEQKKGK 425 (432)
Q Consensus 413 ~Gr~l~Ve~ar~~ 425 (432)
+|+.|+|.+++.+
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988654
No 210
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.14 E-value=7e-11 Score=107.62 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-CeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFG-PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr~l~Ve~ 421 (432)
..++|||+|||..+++++|+++|++|| .|..+.+..+ .+|||||+|.+.+++.+|+..+ +..|+ |+.|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 469999999999999999999999999 9998877322 3689999999999999999988 99999 99999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 211
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.13 E-value=1.3e-10 Score=108.88 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeC-CeEEEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFG-PIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFG-DRKVYVEQ 421 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG-~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~-Gr~l~Ve~ 421 (432)
..++|||+|||.++++++|+++|++|| .|..+.+.. +.+|||||+|.+.+++.+||..+ +..|+ |+.|+|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-----CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 469999999999999999999999999 999987732 24689999999999999999988 99999 99999999
Q ss_pred ccCC
Q 037989 422 KKGK 425 (432)
Q Consensus 422 ar~~ 425 (432)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9874
No 212
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=3.3e-11 Score=99.65 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=61.6
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEE
Q 037989 351 VANLPMDVTADQIKSVF------------VKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKV 417 (432)
Q Consensus 351 V~NLp~~vte~~L~~~F------------~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l 417 (432)
+.||++.+++++|+++| ++||.|..+.|..+. .++++|||||+|.+.++|++|+..+ |..|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 66788888888777666 999999999986554 4688999999999999999999998 999999999
Q ss_pred EEEEc
Q 037989 418 YVEQK 422 (432)
Q Consensus 418 ~Ve~a 422 (432)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.3e-10 Score=91.38 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=63.5
Q ss_pred CCEEEEcCCC-------CCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEE
Q 037989 346 NPVIFVANLP-------MDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVY 418 (432)
Q Consensus 346 ~~~vfV~NLp-------~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~ 418 (432)
..+|-|.... .++++++|+++|++||.|..+.|+ ++++|||||+|.+.+++..||+.+ ..+.|+.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEE
Confidence 4567676543 468999999999999999998875 367899999999999999999984 446799999
Q ss_pred EEEccCCcc
Q 037989 419 VEQKKGKLN 427 (432)
Q Consensus 419 Ve~ar~~~~ 427 (432)
|++++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987643
No 214
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.09 E-value=1e-10 Score=108.39 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCe--EEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCe----EE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPI--KANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDR----KV 417 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I--~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr----~l 417 (432)
.+++|||+|||+++++++|+++|++||.| ..+.+..+. +..+|||||+|.+.+++.+||..+ +..|+|+ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46889999999999999999999999999 777664433 556799999999999999999999 9999886 46
Q ss_pred EEEEc
Q 037989 418 YVEQK 422 (432)
Q Consensus 418 ~Ve~a 422 (432)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66553
No 215
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=3.3e-10 Score=93.80 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=67.4
Q ss_pred CCCEEEEcCC--CCCCc--------HHHHHHHhhcCCCeEEEEEEeeCCC--CCCccEEEEEeCCHHHHHHHHHhC-CCe
Q 037989 345 KNPVIFVANL--PMDVT--------ADQIKSVFVKFGPIKANGIRIRTNQ--LRPNCFSFVEFESISSMQNALKAS-PIT 411 (432)
Q Consensus 345 ~~~~vfV~NL--p~~vt--------e~~L~~~F~~fG~I~~~~v~~~~~~--g~~~gfaFVeF~~~~~a~~Al~~~-~~~ 411 (432)
..+.|.++|+ +.+.. .++|+++|++||.|..+.|..+..+ ++++||+||+|.+.++|.+|++.+ |..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578899998 33333 3689999999999999988766543 357899999999999999999999 999
Q ss_pred eCCeEEEEEEccC
Q 037989 412 FGDRKVYVEQKKG 424 (432)
Q Consensus 412 i~Gr~l~Ve~ar~ 424 (432)
|+||.|+|.....
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 216
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.03 E-value=7.3e-10 Score=93.74 Aligned_cols=80 Identities=23% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCC-----CcHHHHHHHhhcCCCeEEEEEEeeCC----CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 345 KNPVIFVANLPMD-----VTADQIKSVFVKFGPIKANGIRIRTN----QLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 345 ~~~~vfV~NLp~~-----vte~~L~~~F~~fG~I~~~~v~~~~~----~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
..+.|+++|+-.. --+++|+++|++||.|..+.|..+.. +++++||+||+|.+.++|.+|++.+ |..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4688999998421 23589999999999999999987754 3456799999999999999999999 999999
Q ss_pred eEEEEEEccC
Q 037989 415 RKVYVEQKKG 424 (432)
Q Consensus 415 r~l~Ve~ar~ 424 (432)
|.|+|.....
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.81 E-value=1.1e-08 Score=101.92 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCCCEEEEcC--CCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee---CCe--
Q 037989 344 AKNPVIFVAN--LPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF---GDR-- 415 (432)
Q Consensus 344 ~~~~~vfV~N--Lp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i---~Gr-- 415 (432)
....+|||+| |++.+++++|+++|++||.|..+.+ . .++|||||+|.+.++|++||+.+ |..+ .|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~----~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--P----PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--C----TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--e----CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3568999999 5889999999999999999988654 2 15799999999999999999999 8876 245
Q ss_pred EEEEEEc
Q 037989 416 KVYVEQK 422 (432)
Q Consensus 416 ~l~Ve~a 422 (432)
.|+|...
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 4666665
No 218
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.75 E-value=1.4e-08 Score=85.22 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCCc----------HHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCC
Q 037989 346 NPVIFVANLPMDVT----------ADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGD 414 (432)
Q Consensus 346 ~~~vfV~NLp~~vt----------e~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~G 414 (432)
.+.|.++|+=..-. +++|+++|++||.|..+.|.. . ..+||+||+|.+.+++.+|++.| |..|+|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~--~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK--N--SAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT--T--CTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec--C--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46788888733221 257899999999999887632 2 25899999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 037989 415 RKVYVEQKK 423 (432)
Q Consensus 415 r~l~Ve~ar 423 (432)
|.|+|++..
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999875
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=2.7e-08 Score=84.27 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCC-HHHHHHHHHhC---CCeeCCeE
Q 037989 342 QAAKNPVIFVANLPMD-VTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFES-ISSMQNALKAS---PITFGDRK 416 (432)
Q Consensus 342 ~~~~~~~vfV~NLp~~-vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~-~~~a~~Al~~~---~~~i~Gr~ 416 (432)
....|+.|||+||+++ ++.++|+++|++||.|..|.+..+ ...|||.|.+ ...+..+++++ +..|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3567999999999999 999999999999999999887432 3369999999 88999999987 77899988
Q ss_pred EEEEEc
Q 037989 417 VYVEQK 422 (432)
Q Consensus 417 l~Ve~a 422 (432)
++++.-
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887654
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=76.05 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCCC----CC-cH---HHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCe
Q 037989 344 AKNPVIFVANLPM----DV-TA---DQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDR 415 (432)
Q Consensus 344 ~~~~~vfV~NLp~----~v-te---~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr 415 (432)
+.+.+|+|..++. +. .+ .+|.+.|.+||.|..+++..+ .+||+|.+.+++.+||+..|..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCCe
Confidence 3567888877652 22 32 578999999999999887543 28999999999999999339999999
Q ss_pred EEEEEEccCCc
Q 037989 416 KVYVEQKKGKL 426 (432)
Q Consensus 416 ~l~Ve~ar~~~ 426 (432)
+|+|+.+++..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999999853
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=6.7e-07 Score=71.84 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCCCCEEEEcCCCCC------CcH---HHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 343 AAKNPVIFVANLPMD------VTA---DQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 343 ~~~~~~vfV~NLp~~------vte---~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
.+.+.+|+|..++.. ..+ .+|.+.|.+||.|..+++..+. +||+|.+.++|.+||+ + |..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456788999877643 232 4689999999999888875432 9999999999999999 6 9999
Q ss_pred CCeEEEEEEccC
Q 037989 413 GDRKVYVEQKKG 424 (432)
Q Consensus 413 ~Gr~l~Ve~ar~ 424 (432)
+||.|+|+++.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998754
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.29 E-value=1.1e-06 Score=81.66 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=57.7
Q ss_pred cHHHHHHHhhcCCCeEEEEEEeeCC----CCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEEEcc
Q 037989 359 TADQIKSVFVKFGPIKANGIRIRTN----QLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVEQKK 423 (432)
Q Consensus 359 te~~L~~~F~~fG~I~~~~v~~~~~----~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve~ar 423 (432)
.+++|++.|++||.|..+.|..+.. +++++||+||+|.+.+++.+|++.+ |..++||.|.+....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999875543 3478999999999999999999999 999999999999864
No 223
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00044 Score=56.75 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcC-----CCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKF-----GPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVY 418 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~f-----G~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~ 418 (432)
..++|-+-|||..++...|+.++..+ |.|+.+. ++.. .+-|+|+|.+...|-+|.-++ |..|+||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~--L~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKIL--LVSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEE--EETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEE--EecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 57889999999999999999999999 9998754 4433 245999999999888887666 9999999999
Q ss_pred EEEc
Q 037989 419 VEQK 422 (432)
Q Consensus 419 Ve~a 422 (432)
+.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 224
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.34 E-value=0.0015 Score=56.01 Aligned_cols=107 Identities=10% Similarity=0.095 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~~~v 92 (432)
-..++..||..++ .+.+.|..+|.++..+...|. ...|.++|.+.+... .+.+..+.+...+.....++..
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A 95 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIA 95 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEE
Confidence 4678899999998 677899999999988876553 788999999988653 3355555555555554444444
Q ss_pred EEEEEEEEeeCC-C----CceeEEEEEeeeeCCeEEEEece
Q 037989 93 LVLVTGYMSGKT-G----KRRFSQSFFLAPQENGFFVLNDI 128 (432)
Q Consensus 93 lV~V~G~l~~~~-~----~~~F~qtF~L~p~~~~y~V~nDi 128 (432)
++...|.+...+ . .+.+.+|+++...+++|.|...-
T Consensus 96 ~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~h 136 (143)
T 4i4k_A 96 LLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQ 136 (143)
T ss_dssp EEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEEec
Confidence 455555555444 2 36788999999999999998753
No 225
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.0029 Score=51.32 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhc-----CCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCCeEEEE
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVK-----FGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGDRKVYV 419 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~-----fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~Gr~l~V 419 (432)
-+.+|.|.|||..+.++.|+-+|++ -|.|..+.. .. +-|+|.|.+...+++.|+...+.|+|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4689999999999999999999976 266665433 21 5589999999999999999899999999999
Q ss_pred EEccCC
Q 037989 420 EQKKGK 425 (432)
Q Consensus 420 e~ar~~ 425 (432)
....++
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 776553
No 226
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=96.78 E-value=0.026 Score=48.48 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeee-cCCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLS-RPGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~-~~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~~~v 92 (432)
..++..|...++ .+.+.|..+|.++..+. ..|. ...|.++|.+.+..+ .+.+..+.+...+.....++..
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A 83 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSA 83 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEE
Confidence 578899999998 67889999999998776 5554 788999999887642 3444445544444444334444
Q ss_pred EEEEEEEEe----eCC---CCceeEEEEEeeeeCCeEEEEeceEEeecCc
Q 037989 93 LVLVTGYMS----GKT---GKRRFSQSFFLAPQENGFFVLNDIFRFVDDD 135 (432)
Q Consensus 93 lV~V~G~l~----~~~---~~~~F~qtF~L~p~~~~y~V~nDifr~~~~~ 135 (432)
++.+...+. -++ +...+.++++|...+++|.|..+--..++..
T Consensus 84 ~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p~ 133 (146)
T 3gzr_A 84 LAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNPD 133 (146)
T ss_dssp EEEEEEEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred EEEEEEEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCcCC
Confidence 444444443 122 2356789999999999999999887766533
No 227
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=96.68 E-value=0.01 Score=52.05 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeec-CCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCC
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSR-PGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~-~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~~ 90 (432)
--..++..|+..++ .+.+.+..+|.++..+.. .|. .+.|.++|.+.+..+ .+.+..+.+...+.....++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 91 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ 91 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCC
Confidence 44678899999998 678899999999988774 443 889999999988764 24444444433333333334
Q ss_pred cEEEEEEEEEeeCC-----CCceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 91 GVLVLVTGYMSGKT-----GKRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 91 ~vlV~V~G~l~~~~-----~~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
..++.+.+.+...+ +...+..+++|...+++|.|.+.....+.
T Consensus 92 ~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~~~ 139 (172)
T 3cu3_A 92 LALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKL 139 (172)
T ss_dssp EEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCBCC
T ss_pred EEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCccc
Confidence 44444555565443 13456678888888999999988775543
No 228
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.58 E-value=0.013 Score=48.45 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--C-CcceEEEeeeeeeeeCCC
Q 037989 15 LVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--Y-QNYQTEILTVDAQASYCK 90 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~-~~~~~~I~s~d~q~s~~~ 90 (432)
.--..++..||..|+ .+.+.|..+|.++..+...+. ....|.++|.+.+..+- + .++.+.|..+... .++
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~gd 84 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGR----PAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT--SAD 84 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE--ETT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC----CcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEe--cCC
Confidence 345678999999998 567799999999988875543 14579999999888752 2 1334444444321 233
Q ss_pred cEEEEE--EEEEeeC--CC--CceeEEEEEeeee-CCeEEEEeceEEee
Q 037989 91 GVLVLV--TGYMSGK--TG--KRRFSQSFFLAPQ-ENGFFVLNDIFRFV 132 (432)
Q Consensus 91 ~vlV~V--~G~l~~~--~~--~~~F~qtF~L~p~-~~~y~V~nDifr~~ 132 (432)
..++.. .|.+... +. ...+.-+++|... +++|.|..++|..+
T Consensus 85 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 85 WAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 333332 2333332 22 2235567788887 88999999999765
No 229
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=96.42 E-value=0.028 Score=45.87 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCC
Q 037989 13 PQLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD-YQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~-~~~~~~~I~s~d~q~s~~~ 90 (432)
....-...+..||..|+ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+- .....+.+........ ++
T Consensus 4 ~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd 78 (129)
T 3hx8_A 4 AKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GD 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC
Confidence 34455678999999998 677899999999988864432 26789999999887541 1113555555555533 23
Q ss_pred cEEEEEEEEEee--CC-CCc--eeEEEEEeeee-CCeEEEEeceEE
Q 037989 91 GVLVLVTGYMSG--KT-GKR--RFSQSFFLAPQ-ENGFFVLNDIFR 130 (432)
Q Consensus 91 ~vlV~V~G~l~~--~~-~~~--~F~qtF~L~p~-~~~y~V~nDifr 130 (432)
..++...-.+.. .+ ... ...-+.++... +++|.|..|.|.
T Consensus 79 ~A~~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 79 FAFESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 233222222222 22 221 23345666677 789999999983
No 230
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=96.07 E-value=0.044 Score=46.99 Aligned_cols=108 Identities=6% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHHHHHHHHc-cCcccccccccCCC--eeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEE
Q 037989 20 FVEQYFKALH-QYPEHLHRFYQDSS--FLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 20 Fv~~YY~~l~-~~p~~l~~fY~~~S--~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~vlV 94 (432)
-...||..|+ .+.+.|..+|.++. .+...+. ....|.++|.+.+..+= .....+++..+..... ++..++
T Consensus 13 ~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g----~~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~-gd~A~v 87 (144)
T 3gwr_A 13 AEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA----APLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQ-ADHVIR 87 (144)
T ss_dssp HHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC----CCEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEEC-SSEEEE
T ss_pred HHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC----CCcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEec-CCEEEE
Confidence 4566777777 77889999999874 3344442 26789999999886541 1123444444444433 233445
Q ss_pred EEEEEEeeCC---CCceeEEEEEeeeeCCeEEEEeceEEee
Q 037989 95 LVTGYMSGKT---GKRRFSQSFFLAPQENGFFVLNDIFRFV 132 (432)
Q Consensus 95 ~V~G~l~~~~---~~~~F~qtF~L~p~~~~y~V~nDifr~~ 132 (432)
.+...+...+ ....+.-|+++...+++|.|...--..+
T Consensus 88 ~~~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 88 IVDEFLTIGDETAPRPAILATNVYRREADGWRMVLHHASPL 128 (144)
T ss_dssp EEEEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred EEEEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecCCC
Confidence 5555666532 2255777888888888999988766443
No 231
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=95.76 E-value=0.24 Score=40.58 Aligned_cols=104 Identities=8% Similarity=-0.010 Sum_probs=64.1
Q ss_pred HHHHHHHHHHc-cCcccccccc--cCCCeeecCCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFY--QDSSFLSRPGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY--~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~~~v 92 (432)
.-++.||..++ .+.+.+..+| .+...+...+. ...|.++|.+.+..+ ++......+.-++.+.. ++.+
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~-~~~~ 82 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKML-SNYA 82 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEE-ETTE
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEc-CCCE
Confidence 35666777666 7788999999 55555544432 688999999977652 22223555555565554 3333
Q ss_pred EEEEEEEEe--eCCCCceeEEEEEeeeeCCeEEEEeceE
Q 037989 93 LVLVTGYMS--GKTGKRRFSQSFFLAPQENGFFVLNDIF 129 (432)
Q Consensus 93 lV~V~G~l~--~~~~~~~F~qtF~L~p~~~~y~V~nDif 129 (432)
..|.|.+. ..+......-|++|...+++|.|..+-.
T Consensus 83 -a~v~~~~~~~~~~~~~~~r~T~v~~k~~g~W~Iv~~H~ 120 (122)
T 3b7c_A 83 -AMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHS 120 (122)
T ss_dssp -EEEEEEEEEECSSCCCEEEEEEEEEEETTEEEEEEEEE
T ss_pred -EEEEEEEEEEccCCCCCcEEEEEEEEeCCCEEEEEEec
Confidence 23344443 3321112346888889999999998753
No 232
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=95.31 E-value=0.12 Score=43.38 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeec-CCCCCccceeccHHHHHHHHhcCC--C-CcceEEEeeeeeeeeCCCcE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSR-PGPDGVMTSITTMKEINDQILSLD--Y-QNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~-~~~~g~~~~~~g~~~I~~~~~sl~--~-~~~~~~I~s~d~q~s~~~~v 92 (432)
...+..||..|+ .+.+.|..+|.++..+.. .|. ...|.++|.+.+..+- | ....+.+..+...... +..
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~-----~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A 79 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGM-----IARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG-DTV 79 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSC-----EEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCC-----cccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-CEE
Confidence 466889999998 678899999999988743 343 7899999999998653 1 2344555555555443 334
Q ss_pred EEEEEEEEee--CC-C-CceeEEEEEeeee-CCeEEEEeceE
Q 037989 93 LVLVTGYMSG--KT-G-KRRFSQSFFLAPQ-ENGFFVLNDIF 129 (432)
Q Consensus 93 lV~V~G~l~~--~~-~-~~~F~qtF~L~p~-~~~y~V~nDif 129 (432)
++.....+.. ++ + .....-++++..+ +++|.|..|..
T Consensus 80 ~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~~ 121 (142)
T 2gxf_A 80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDNS 121 (142)
T ss_dssp EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEET
T ss_pred EEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEECC
Confidence 4434434433 12 1 2223347777775 56799877754
No 233
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.29 E-value=0.075 Score=43.16 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCEEEEcCCCCCC-cH----HHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEE
Q 037989 346 NPVIFVANLPMDV-TA----DQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYV 419 (432)
Q Consensus 346 ~~~vfV~NLp~~v-te----~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~V 419 (432)
..+|+|.||+.++ .. +.++.+|..|+++..... ++ +..-..|.|.+.++|-+|-..+ +..|+|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lk-----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FK-----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ET-----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cC-----cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998865 22 567999999999877544 22 3335789999999999999999 99999999999
Q ss_pred EEccCC
Q 037989 420 EQKKGK 425 (432)
Q Consensus 420 e~ar~~ 425 (432)
-.+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 888653
No 234
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.23 E-value=0.072 Score=42.71 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
..+.++| +.|......||.++|+.||.|. +.++ + + .-|||.|.+++.+..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-d-D-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-D-D-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-E-T-----TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-c-C-----CeEEEEecCHHHHHHHHHhc
Confidence 4567777 9999999999999999999654 4442 2 2 35999999999999998854
No 235
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.20 E-value=0.1 Score=43.40 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=57.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeCC-eEEEEEEc
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFGD-RKVYVEQK 422 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~G-r~l~Ve~a 422 (432)
..+.|-|=+.|... ...+.+.|++||.|.+... . ....+-.|.|.+..+|++||...|..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~----~--~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM----S--NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE----C--SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc----C--CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 46788888999885 5668889999999987543 1 24578999999999999999999999985 66777663
No 236
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.15 E-value=0.52 Score=40.19 Aligned_cols=113 Identities=11% Similarity=0.096 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCC
Q 037989 14 QLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~ 90 (432)
.+--...+.+||..|+ .+.+.|..+|.++..+..... | ....|.++|.+.+..+- +....+.+..+.. .++
T Consensus 19 ~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~---~~g 92 (156)
T 3h51_A 19 AREVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYRTVRL---LDD 92 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE---CSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccceEEEE---ecC
Confidence 3444667788888887 778899999999877653111 1 25789999998887642 1122333333332 333
Q ss_pred cEEEEEEEEE--ee--CC-C--CceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 91 GVLVLVTGYM--SG--KT-G--KRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 91 ~vlV~V~G~l--~~--~~-~--~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
.+ .++.|.+ .. .+ . ......++++...+++|.|..+.+..+.
T Consensus 93 d~-A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p 141 (156)
T 3h51_A 93 DS-AVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMP 141 (156)
T ss_dssp SE-EEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred Ce-EEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCC
Confidence 32 3344543 22 12 2 2334567777788899999999886653
No 237
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=95.11 E-value=0.16 Score=42.58 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC-C--CCcceEEEeeeeeeeeCCCcE
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL-D--YQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl-~--~~~~~~~I~s~d~q~s~~~~v 92 (432)
-..+..+||..++ .+.+.|..+|.++..+...+..|. .+.|.++|.+.+..+ . ....++++.....+...+..+
T Consensus 15 I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~--~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aa 92 (143)
T 2ux0_A 15 IIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN--LVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAA 92 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--EEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCc--EEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEE
Confidence 3466777777776 888899999998876654321121 678999999988775 2 234566676666666544433
Q ss_pred EEE---EEEEEeeCCC--CceeEEEEEeeeeCCeEEEEeceEEe
Q 037989 93 LVL---VTGYMSGKTG--KRRFSQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 93 lV~---V~G~l~~~~~--~~~F~qtF~L~p~~~~y~V~nDifr~ 131 (432)
++. +.|....++. ...+--|+++...+++|.|..+-...
T Consensus 93 v~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g~Wkivh~H~S~ 136 (143)
T 2ux0_A 93 CIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCSG 136 (143)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEeEeeeeecCCCCeeeeeEEEEEEEEEECCEEEEEEEeeCC
Confidence 322 2221111122 34456777888889999999887743
No 238
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.87 E-value=0.12 Score=41.10 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=50.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC--CCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL--RPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g--~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
++|-|++||+..|++++.+.++..+.+......--+.+. ...+-|||.|.+.+++..-.... |+.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 578999999999999999999988876544332212111 23467999999999999988887 7776
No 239
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=94.70 E-value=0.47 Score=39.52 Aligned_cols=113 Identities=8% Similarity=-0.035 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC-C-C-CcceEEEeeeeeeeeCCC
Q 037989 15 LVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL-D-Y-QNYQTEILTVDAQASYCK 90 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl-~-~-~~~~~~I~s~d~q~s~~~ 90 (432)
+--..++.+||..++ .+.+.|..+|.++..+...+. . ....|.++|.+.+... . + ...+++|..+..+-..+-
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~--~-~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd~ 84 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQ--A-LQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGDL 84 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSS--S-SCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC--C-ccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCCE
Confidence 344667888888887 777899999999876543332 1 1446999998876431 1 1 245677777766654332
Q ss_pred cEEEEEEEEEeeC--C-CCceeEEEEEeeeeCCeEEEEeceEEe
Q 037989 91 GVLVLVTGYMSGK--T-GKRRFSQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 91 ~vlV~V~G~l~~~--~-~~~~F~qtF~L~p~~~~y~V~nDifr~ 131 (432)
.++.....+... + ....+.-|+++...+++|.|..+-..+
T Consensus 85 -A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S~ 127 (142)
T 3f7s_A 85 -ALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWSA 127 (142)
T ss_dssp -EEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred -EEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeecc
Confidence 222222233322 2 333445677888889999999887754
No 240
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=94.23 E-value=1.1 Score=36.76 Aligned_cols=111 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhc-CCCCcceEEEeeeeeeeeCCCcE
Q 037989 14 QLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILS-LDYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~s-l~~~~~~~~I~s~d~q~s~~~~v 92 (432)
.+|-..|-++.--+...+.+.|..+|.++..+.+.+. | ....|.++|.+ +.. ++-......+..+......++..
T Consensus 14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~--~~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~d~A 89 (129)
T 2rcd_A 14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGA-G--ENLYGIEEIRA-FRLARPSAGLDRALRNTVITTYGHDMA 89 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEET-T--EEEESHHHHHH-HHHHSCCTTCCCEEEEEEEEEBTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECC-C--CccCCHHHHHH-HHHhcCCCCCceEEEEEEEEEecCcEE
Confidence 3455555444444445888899999998875443221 2 16779999999 554 44222344444444444433323
Q ss_pred EEEEEEEEeeCCCCceeEEEEEeeeeCCeEEEEeceEE
Q 037989 93 LVLVTGYMSGKTGKRRFSQSFFLAPQENGFFVLNDIFR 130 (432)
Q Consensus 93 lV~V~G~l~~~~~~~~F~qtF~L~p~~~~y~V~nDifr 130 (432)
+ +...+...+....+.+|+++...+++|.|.+.-..
T Consensus 90 ~--~~~~~~~~~~~~~g~~t~v~~r~~~gWrIv~~H~S 125 (129)
T 2rcd_A 90 V--ASTEFTRTGSTKIGRQMQTWVKMPEGWRIVAAHVS 125 (129)
T ss_dssp E--EEEEEECSSCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred E--EEEEEEEcCCCCceeEEEEEEECCCcEEEEEEecC
Confidence 3 33343333212334568888888899999887554
No 241
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.10 E-value=0.067 Score=43.01 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
+.++| +.|......||.++|+.||.|. +.+ -.+ .-|||.|.+++.+..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~W--idD-----TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISW--IDD-----TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEE--EET-----TEEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEE--EcC-----CeEEEEecCHHHHHHHHHhc
Confidence 55677 9999999999999999999443 444 222 35999999999999998854
No 242
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=94.07 E-value=0.33 Score=40.50 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHcc--CcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcE
Q 037989 17 GNSFVEQYFKALHQ--YPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCKGV 92 (432)
Q Consensus 17 g~~Fv~~YY~~l~~--~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~~v 92 (432)
...|++.++..... +-+.|-..|.++..|...+. ...|.+++.+.|..+ .+.+.++.|..+......++++
T Consensus 12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~ 86 (128)
T 1tp6_A 12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGA 86 (128)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEE
Confidence 45667777775554 45688899999988875543 688999999999875 3557888888888877666767
Q ss_pred EEEEEEEEeeCC-CCceeEEEEEeeee-CC--eEEEEeceE
Q 037989 93 LVLVTGYMSGKT-GKRRFSQSFFLAPQ-EN--GFFVLNDIF 129 (432)
Q Consensus 93 lV~V~G~l~~~~-~~~~F~qtF~L~p~-~~--~y~V~nDif 129 (432)
+|.-.+.=..++ ...+++ |.+|... ++ .|.++.+.+
T Consensus 87 vv~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET~ 126 (128)
T 1tp6_A 87 TLAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQETF 126 (128)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 766554333444 555676 7888554 44 488888764
No 243
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=94.04 E-value=0.73 Score=38.22 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhc-CCCCcceEEEeeeeeeeeCCCcEEEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILS-LDYQNYQTEILTVDAQASYCKGVLVL 95 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~s-l~~~~~~~~I~s~d~q~s~~~~vlV~ 95 (432)
..-+..|+..++ .+.+.|.+.|+++..+...+ +|........++..+.+.+ -+.....++|.+++.. ++.-.+.
T Consensus 15 ~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~---gd~A~a~ 90 (125)
T 3duk_A 15 TEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIV---GTVAHAR 90 (125)
T ss_dssp HHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEE---CCEEEEE
Confidence 345789999998 67779999999999885432 2331112245565555543 4555678888877764 2322233
Q ss_pred EEEEEeeCC-CCceeEEEEEeeeeCCeEEEEeceEEee
Q 037989 96 VTGYMSGKT-GKRRFSQSFFLAPQENGFFVLNDIFRFV 132 (432)
Q Consensus 96 V~G~l~~~~-~~~~F~qtF~L~p~~~~y~V~nDifr~~ 132 (432)
| .... ..+.|+..|.|...+++|.|.|=+|++.
T Consensus 91 v----~~~~~~~~~f~D~l~L~k~dg~WkIv~K~~~~h 124 (125)
T 3duk_A 91 V----EAENWTNFKFSDLFLLLKLDGKWTIVNKVFHLH 124 (125)
T ss_dssp E----EEECSSSCCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred E----EEEEcCCCeEEEEEEEEEeCCEEEEEEEEEEec
Confidence 2 1113 4568999999999999999999999763
No 244
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=93.41 E-value=0.27 Score=41.66 Aligned_cols=107 Identities=8% Similarity=0.064 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHH-HHhcC-C-CCcceEEEeeeeeeeeCCCc
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEIND-QILSL-D-YQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~-~~~sl-~-~~~~~~~I~s~d~q~s~~~~ 91 (432)
--...+..||..|. .+.+.|..+|.++..+...+. ...|.++|.+ .+... . +.+..+++..+..+-.. +.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d~ 104 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-DI 104 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-CE
Confidence 44567888888887 788899999999877664443 3779999988 54321 1 13346666666555443 32
Q ss_pred EEEEEEEEEeeC--C--CCceeEEEEEe-eeeCCeEEEEece
Q 037989 92 VLVLVTGYMSGK--T--GKRRFSQSFFL-APQENGFFVLNDI 128 (432)
Q Consensus 92 vlV~V~G~l~~~--~--~~~~F~qtF~L-~p~~~~y~V~nDi 128 (432)
.++.....+... + ....+.-|++| ...+++|.|.+.-
T Consensus 105 A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g~WkIvh~H 146 (148)
T 3bb9_A 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVH 146 (148)
T ss_dssp EEEEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEeeeeCCcccccceEEEEEEeEEcCCcEEEEEEE
Confidence 333333333322 2 22346668888 7788899998753
No 245
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.29 E-value=0.11 Score=43.96 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=55.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEee-------------CCCC-CCccEEEEEeCCHHHHHHHHHhCCCee
Q 037989 347 PVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIR-------------TNQL-RPNCFSFVEFESISSMQNALKASPITF 412 (432)
Q Consensus 347 ~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~-------------~~~g-~~~gfaFVeF~~~~~a~~Al~~~~~~i 412 (432)
..|.|=+.|...+ ..+.+.|++||.|.+-.-..+ +..+ .+.++-.|.|++..+|++||...|..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 5566778877655 457789999999975210010 0001 135778999999999999999999999
Q ss_pred CCeEEEEEEcc
Q 037989 413 GDRKVYVEQKK 423 (432)
Q Consensus 413 ~Gr~l~Ve~ar 423 (432)
+|..|-|...+
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888764
No 246
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=93.29 E-value=0.74 Score=39.11 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCC----CcceEEEeeee-eeeeC
Q 037989 14 QLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDY----QNYQTEILTVD-AQASY 88 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~----~~~~~~I~s~d-~q~s~ 88 (432)
.+|-..|-+.|-.+..++.+.|-.+|.+...+++.+..| ...|.++|.+.+.+-.+ ....+.+..+. .+...
T Consensus 10 ~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g 86 (145)
T 3soy_A 10 QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG 86 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence 456666666666666689999999998764343332222 56899999999875332 22344455555 34433
Q ss_pred CCcEEE---EEEEEEeeCC--CCceeEEEEEeeeeC-CeEEEEeceE
Q 037989 89 CKGVLV---LVTGYMSGKT--GKRRFSQSFFLAPQE-NGFFVLNDIF 129 (432)
Q Consensus 89 ~~~vlV---~V~G~l~~~~--~~~~F~qtF~L~p~~-~~y~V~nDif 129 (432)
+-.+.+ .+.|.+..++ ....+-.|+++.... ++|.|..+-.
T Consensus 87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~ 133 (145)
T 3soy_A 87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHY 133 (145)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEec
Confidence 322222 1233332233 222355666667744 8999998766
No 247
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=93.17 E-value=0.69 Score=39.15 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcc--eEEEeeeeeeeeCCC
Q 037989 14 QLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNY--QTEILTVDAQASYCK 90 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~--~~~I~s~d~q~s~~~ 90 (432)
+..-...+..|+..++ .+.+.|..+|.++..+...|. ...|.++|.+.+...- ..+ .......+++-..+
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~~-~~~~~~~~~~~~~i~v~GD- 88 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQND-QRVIIEASATFEEIVIVEP- 88 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHHH-HHEEEEEEEEEEEEEEETT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHHH-HhcCCCCceEEEEEEEcCC-
Confidence 4567888999999888 778899999999988876664 4459999998875431 111 22222223333322
Q ss_pred cEEEEEEEE----EeeC-C-CCcee--EEEEEeee-eCCeEEEEeceEE
Q 037989 91 GVLVLVTGY----MSGK-T-GKRRF--SQSFFLAP-QENGFFVLNDIFR 130 (432)
Q Consensus 91 ~vlV~V~G~----l~~~-~-~~~~F--~qtF~L~p-~~~~y~V~nDifr 130 (432)
+-++.|. ++.. + ....+ .-+++|.. .++.|.|..|.--
T Consensus 89 --~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~~ 135 (139)
T 3rob_A 89 --MAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDANL 135 (139)
T ss_dssp --EEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred --eEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhhh
Confidence 2233333 2322 3 33333 36778888 4578999998753
No 248
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.17 E-value=0.039 Score=56.63 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhCCCeeC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKASPITFG 413 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~~~~i~ 413 (432)
.++|||. .+..+++.+|.++|++||+|..+. .+... ..|+.|+|.+.+++++++....+...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~--~~~~~---g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHF--FYESF---GLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEE--EECSS---SEEEEEECC---CCHHHHSSCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEE--EEccC---CeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 4899996 799999999999999999998754 34333 38999999999999988766544333
No 249
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=92.74 E-value=0.079 Score=44.84 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=63.4
Q ss_pred HHHHHHHHHcc------CcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCC-
Q 037989 20 FVEQYFKALHQ------YPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCK- 90 (432)
Q Consensus 20 Fv~~YY~~l~~------~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~- 90 (432)
=|++||..++. +.+.|..||.++..+...+. ...|.++|.+.+..+ .+.++++.+....... +|
T Consensus 7 ~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v~~~--~gd 79 (131)
T 3er7_A 7 TLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAGWVPSE--TGD 79 (131)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECCCEECS--STT
T ss_pred HHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEEEEEec--CCC
Confidence 48999999983 26689999999999832332 678999999999865 3456666665533222 32
Q ss_pred c--EEEEEEEEEeeCC-CCceeEEEEEeeeeCC--eEEEEeceEEee
Q 037989 91 G--VLVLVTGYMSGKT-GKRRFSQSFFLAPQEN--GFFVLNDIFRFV 132 (432)
Q Consensus 91 ~--vlV~V~G~l~~~~-~~~~F~qtF~L~p~~~--~y~V~nDifr~~ 132 (432)
- +--.++|.+..+. ......-.|.+..+++ ...+..|.+-++
T Consensus 80 ~~~~~w~~~g~~~~G~~~~~~g~dv~~fd~dGkI~~~~~~~d~~~~~ 126 (131)
T 3er7_A 80 TMETRWAVCGKSADGSVFTQDGTDIARLNADGKIVYLANVPDDTAMF 126 (131)
T ss_dssp CEEEEEEEEEEETTSCEEEEEEEEEEEECTTSCEEEEEEEECCC---
T ss_pred EEEEEEEEEEEECCCCEEEEeeeEEEEEcCCCcEEEEEEccChHHHH
Confidence 2 2234444433322 4444555665543442 556666665443
No 250
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=92.63 E-value=1.2 Score=35.55 Aligned_cols=105 Identities=10% Similarity=-0.037 Sum_probs=63.3
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVLVLVT 97 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vlV~V~ 97 (432)
...++||..+. .+.+.|..++.++-.+.+.+ | ...|.+++.+.+.+-.......++..+..+...++.+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 34556666554 78889999999875554443 2 4557788777777654333356677777777655544443 2
Q ss_pred EEEe--eCC--CCceeEEEEEeeeeCCeEEEEeceE
Q 037989 98 GYMS--GKT--GKRRFSQSFFLAPQENGFFVLNDIF 129 (432)
Q Consensus 98 G~l~--~~~--~~~~F~qtF~L~p~~~~y~V~nDif 129 (432)
-.+. ..+ ....+-.|.+....+++|.|...-.
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g~W~iv~~h~ 119 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAGSC 119 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCCeEEEEEEEE
Confidence 3332 233 2223444556667788999876543
No 251
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=92.42 E-value=0.92 Score=38.06 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCC---ccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCc
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDG---VMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g---~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~ 91 (432)
..||+.||..|+ .+.+.|..+|.++..+...|... -.....|.++|.+.+..+. +..++++|..+-+ -++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 789999999998 56789999999998766555321 1236789999999988763 4455677765543 2344
Q ss_pred EEEEEEEEEee--CC--CCceeEEEEEee
Q 037989 92 VLVLVTGYMSG--KT--GKRRFSQSFFLA 116 (432)
Q Consensus 92 vlV~V~G~l~~--~~--~~~~F~qtF~L~ 116 (432)
+.+.+.+.... .+ ....|+..|.+.
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v~ 112 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQFQ 112 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEEE
Confidence 54444433322 22 234677777664
No 252
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=92.40 E-value=0.67 Score=44.45 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEE
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vlV 94 (432)
|-+.=|.+|+..|+ .+-+.+..+|.++..|.=+=. ..+.|+++|..++..-- ++.+.+...--+.+.-+|+.-|
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~----~PIvGreAI~~y~~~ea-q~~~l~P~~g~~ep~e~g~~qi 267 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQ----RPIVGKENVLRFFREEC-QNLKLIPERGVTEPAEDGFTQI 267 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHC-TTCEEEEEEEEEEECGGGCEEE
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCC----CCccCHHHHHHHHHHHh-ccCEEeeccCccccccCCCceE
Confidence 55777999999999 778899999999998873321 28899999999998632 2468888887888888889999
Q ss_pred EEEEEEeeCC----CCceeEEEEEeeeeCCeEEEEeceE
Q 037989 95 LVTGYMSGKT----GKRRFSQSFFLAPQENGFFVLNDIF 129 (432)
Q Consensus 95 ~V~G~l~~~~----~~~~F~qtF~L~p~~~~y~V~nDif 129 (432)
.|+|.++..= ....-.-.|.|-++++=|+|.=|.+
T Consensus 268 ~vtGkVqTpwfGv~v~mnVaW~F~lN~~gkI~~v~i~LL 306 (323)
T 3mg1_A 268 KVTGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVAIDLL 306 (323)
T ss_dssp EEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred EEEEEEEcccCCccccccceeEEEECCCCcEEEEEehhh
Confidence 9999998643 4456788999999999999988876
No 253
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=92.26 E-value=3.7 Score=34.09 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 037989 14 QLVGNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vl 93 (432)
.+|-..|.+.|--+..++.+.|-.+|.++..+++.+. | ....|.++|......+.-....+.+.....+...++..+
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~-g--~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGI-A--EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECS-S--CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCC-C--CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 4566666665555666999999999998875432232 1 277899999996665542212344444444443323333
Q ss_pred EEEEEEEeeCC-C-CceeEEEEEeeeeC--CeEEEEeceEEee
Q 037989 94 VLVTGYMSGKT-G-KRRFSQSFFLAPQE--NGFFVLNDIFRFV 132 (432)
Q Consensus 94 V~V~G~l~~~~-~-~~~F~qtF~L~p~~--~~y~V~nDifr~~ 132 (432)
+ + ......+ . .-+++|+| ...+ ++|.|...-...+
T Consensus 88 ~-~-~~~~~~~~~~~gr~t~vw--~r~~~~~gWrIv~~H~S~~ 126 (129)
T 2owp_A 88 V-S-TEFTSDATPLLGRQMQTW--ARLSPADGWKIVAAHVSLI 126 (129)
T ss_dssp E-E-EEEEETTEEEEEEEEEEE--EECSTTTCEEEEEEEEEEE
T ss_pred E-E-EEEEECCCCcceEEEEEE--EECCCCCCEEEEEeeecCC
Confidence 3 2 2333434 3 33345555 5566 7999987766544
No 254
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=91.80 E-value=0.97 Score=38.03 Aligned_cols=113 Identities=7% Similarity=-0.011 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCcccee-ccHHHHHHHHhcCC-----CCcceEEEeeeeeeeeC
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSI-TTMKEINDQILSLD-----YQNYQTEILTVDAQASY 88 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~-~g~~~I~~~~~sl~-----~~~~~~~I~s~d~q~s~ 88 (432)
--..|+..|+..|+ .+.+.+..+|.++..+.+.+. .. .|.++|.+.+..+. +..+.|.|..+.....
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~- 93 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE- 93 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe-
Confidence 34578999999998 567799999999988876652 44 89999999887652 2335666655444332
Q ss_pred CCcEEEEEEEEEe--eCCCCcee---EEEEEeeeeCCeEEEEeceEEeecC
Q 037989 89 CKGVLVLVTGYMS--GKTGKRRF---SQSFFLAPQENGFFVLNDIFRFVDD 134 (432)
Q Consensus 89 ~~~vlV~V~G~l~--~~~~~~~F---~qtF~L~p~~~~y~V~nDifr~~~~ 134 (432)
++...+.....+. ..+....+ ...+.|...+++|.|.+-.++++..
T Consensus 94 gd~A~~~~~~~~~~~~~~~~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 94 GDTATARCHSVVFRCVSGTFGSHRVSANRWTFRRTPAGWRAVRRENALLDG 144 (155)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred CCEEEEEEEEEEEEEcCCCceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence 2323222222221 11211111 1345777888999999977777643
No 255
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=91.60 E-value=2.1 Score=35.08 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~~vl 93 (432)
=..-+..|+..++ .+.+.|...|++++.+.....+|. ....+.++..+.+.+. +.....+.|.+++.. ++.-+
T Consensus 14 I~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~---gd~A~ 89 (128)
T 3blz_A 14 IVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNK-LTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV---GTAAS 89 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSC-EEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCc-EEecCHHHHHHHHHhcCCCCccccCeEEEEEEE---CCEEE
Confidence 3456889999998 677899999999988754221122 1223455655655553 434456666555433 23333
Q ss_pred EEEEEEEeeCCCCceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 94 VLVTGYMSGKTGKRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 94 V~V~G~l~~~~~~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
+.|... .. ....|...|.|...+++|.|.+-+|....
T Consensus 90 a~~~~~-~~--~~~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 90 ARIDTD-DI--SGFRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEE-EE--TTEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEE-Ec--CCCceEEeEEEEEECCEEEEEEEEEEecc
Confidence 333331 11 34568999999999999999999997653
No 256
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=91.45 E-value=1.1 Score=38.23 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHcc--CcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCC
Q 037989 15 LVGNSFVEQYFKALHQ--YPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~ 90 (432)
.--..|+..|+..|+. +.+.+..+|.++..+.+.+. | ...+.|.++|.+.+... ++..+.+.|..+......++
T Consensus 28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~gd 105 (163)
T 3b8l_A 28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGD 105 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCCC
Confidence 4456899999999986 67799999999988765431 1 12578999999888753 23344566665554422233
Q ss_pred cEEEEEEEEE--eeCC-CC--ceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 91 GVLVLVTGYM--SGKT-GK--RRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 91 ~vlV~V~G~l--~~~~-~~--~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
...+.....+ ...+ .. ....-+++|...+++|.|..-.+.+.-
T Consensus 106 ~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~WrI~~r~~~~~~ 153 (163)
T 3b8l_A 106 TASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMDFLM 153 (163)
T ss_dssp EEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred EEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCCEEEEEEEEEEEEe
Confidence 3332222221 1222 21 122345667777899999998887653
No 257
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=91.38 E-value=2 Score=37.84 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCC-----------------eeecCCCCCccceeccHHHHHHHHhcC--CCCcceE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSS-----------------FLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQT 77 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S-----------------~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~ 77 (432)
......||..|. .+.+.|..+|.+.. .+.+.|. ....|.++|.+.+..+ ......+
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~ 90 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQF 90 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEE
Confidence 345677777776 77889999999773 3445542 2789999999887643 1112455
Q ss_pred EEeeeeeeeeCCCcEEEEEEEEEeeCC----------C--CceeEEEEEeeeeCCeEEEEeceEEeec
Q 037989 78 EILTVDAQASYCKGVLVLVTGYMSGKT----------G--KRRFSQSFFLAPQENGFFVLNDIFRFVD 133 (432)
Q Consensus 78 ~I~s~d~q~s~~~~vlV~V~G~l~~~~----------~--~~~F~qtF~L~p~~~~y~V~nDifr~~~ 133 (432)
++..+....+.+ ..++.+...+...+ + .+++.-|+++...+++|.|.++-...+.
T Consensus 91 ~~~dv~v~~~gD-~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~Sp~~ 157 (170)
T 3cnx_A 91 FLTDVHVSVTGD-TALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVL 157 (170)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECC
T ss_pred EEEEEEEEEeCC-EEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEecCCCC
Confidence 555555544433 34444455554311 1 1235578888888889999988776554
No 258
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=90.62 E-value=1.8 Score=37.18 Aligned_cols=111 Identities=8% Similarity=-0.065 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCC-CcceEEEeeeeeeeeCCCcEE
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDY-QNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~-~~~~~~I~s~d~q~s~~~~vl 93 (432)
--..++..|+..|+ .+.+.+..+|.++..+.+.+. ...|.++|.+.+....- ..+.|.|..+..... ++...
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~-gd~A~ 88 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVD-GDVAT 88 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEe-CCEEE
Confidence 34578999999998 566789999999988877653 77899999988876311 234566655544333 23222
Q ss_pred EEEEEE--EeeCC-CC--ceeEEEEEeeeeCCeEEEEeceEEee
Q 037989 94 VLVTGY--MSGKT-GK--RRFSQSFFLAPQENGFFVLNDIFRFV 132 (432)
Q Consensus 94 V~V~G~--l~~~~-~~--~~F~qtF~L~p~~~~y~V~nDifr~~ 132 (432)
+..... +...+ .. ..-.-+.+|...+++|.|..-.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~Wri~~r~~~~~ 132 (170)
T 2chc_A 89 GRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEEe
Confidence 222211 12222 21 11223445666788999999888765
No 259
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=90.54 E-value=0.6 Score=41.87 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHccCcccccccccCCCeeecCCC-CCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCc-E
Q 037989 17 GNSFVEQYFKALHQYPEHLHRFYQDSSFLSRPGP-DGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKG-V 92 (432)
Q Consensus 17 g~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~-~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~-v 92 (432)
-..=|++|+..+..+++.+..||.++..+.+... .|......|.++|.+.+..+. |.+ ..+..+....+-++. |
T Consensus 43 nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDpd~V 120 (185)
T 3jum_A 43 NRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDPNWF 120 (185)
T ss_dssp HHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSSTTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCCCEE
Confidence 3456899999999989999999999998876432 355667899999999986652 333 445555665554543 5
Q ss_pred EEEEEEEEe--eCC-CCceeEEEE
Q 037989 93 LVLVTGYMS--GKT-GKRRFSQSF 113 (432)
Q Consensus 93 lV~V~G~l~--~~~-~~~~F~qtF 113 (432)
++-..|.-+ ..+ +...|.+.|
T Consensus 121 vvE~~~~Gtv~~TGkp~~~Y~~~y 144 (185)
T 3jum_A 121 WVECRGEGAIVFPGYPRGQYRNHF 144 (185)
T ss_dssp EEEEEEEEEECCTTSCCEEEEEEE
T ss_pred EEEEEEEEEEcCCCCccceEEEeE
Confidence 565555433 333 323455543
No 260
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=90.33 E-value=1.2 Score=38.96 Aligned_cols=113 Identities=6% Similarity=-0.128 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHH-hcC--CCCcceEEEeeeeeeeeCCCc
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQI-LSL--DYQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~-~sl--~~~~~~~~I~s~d~q~s~~~~ 91 (432)
--..|+..|...|+ .+.+.+..+|.++..+.+.+. ..+.|.++|.+.+ ... ++..+.+.|..+.......+.
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~----g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d~ 107 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGI----GTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSADK 107 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTT----EEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSSE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCC----ccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCCe
Confidence 44689999999999 566789999999988866442 2578999999988 542 345567777655444322133
Q ss_pred EEEEEEEEEe--eCC--CCcee--EEEEEeeeeCCeEEEEeceEEee
Q 037989 92 VLVLVTGYMS--GKT--GKRRF--SQSFFLAPQENGFFVLNDIFRFV 132 (432)
Q Consensus 92 vlV~V~G~l~--~~~--~~~~F--~qtF~L~p~~~~y~V~nDifr~~ 132 (432)
..+.....+. ... ....+ .-+..|...+++|.|..-.+.+.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg~WrI~~r~~~~~ 154 (176)
T 3a76_A 108 VNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDGVWKFSKRNACTN 154 (176)
T ss_dssp EEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 3332111221 111 11111 12345667788999999877664
No 261
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=90.24 E-value=0.84 Score=36.62 Aligned_cols=89 Identities=6% Similarity=-0.068 Sum_probs=58.5
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKGVLVL 95 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~vlV~ 95 (432)
+.|+.||..|+ .+.+.|..++.++-.....|. ....|.+++.+.+..+. +.+.+++|..+=+ .++ .|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~---~Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQ---NEN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEE---CSS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEE---eCC--EEE
Confidence 56999999998 456788899998866555554 26789999998887653 2235677776433 233 345
Q ss_pred EEEEEee--CC---CCceeEEEEEee
Q 037989 96 VTGYMSG--KT---GKRRFSQSFFLA 116 (432)
Q Consensus 96 V~G~l~~--~~---~~~~F~qtF~L~ 116 (432)
|.|.+.. .+ ....|+..|.+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 5555543 22 445678888775
No 262
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=88.44 E-value=0.42 Score=38.90 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeecC------CCCCccceeccHHHHHHHHhcC--CCCcceEEEeee
Q 037989 15 LVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRP------GPDGVMTSITTMKEINDQILSL--DYQNYQTEILTV 82 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~------~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~ 82 (432)
+-...+++.||..++ .+.+.|..+|.++..+.-. |.. .....|.++|.+.|..+ .+.+++++|..+
T Consensus 8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~--~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 8 AFAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEP--SGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-C--CCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCC--CCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 335789999999997 6778999999999888744 100 02788999999998764 244677777654
No 263
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=88.22 E-value=1.2 Score=39.15 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHccCcccccccccCCCe---eecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCC
Q 037989 15 LVGNSFVEQYFKALHQYPEHLHRFYQDSSF---LSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYC 89 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~---l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~ 89 (432)
+--.+-|++||..+..+++.++.||.++.. +. -..|......|.++|.+++..+. |. ..++..+..+.+-+
T Consensus 19 ~~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e--~~~G~P~~~~Gre~l~~~~~~~~~~~~--~~~~~~~~i~~t~D 94 (163)
T 3ff0_A 19 RKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWT--TDTGSPIVIRGKDKLAEHAVWSLKCFP--DWEWYNIKVFETDD 94 (163)
T ss_dssp HHHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESS--CSSSSCEEEESHHHHHHHHHHHHHHST--TCEEEEEEEEEBSS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeE--ECCCCCcceecHHHHHHHHHHHHhhCC--CceeeeEEEEEcCC
Confidence 344677999999898999999999999877 44 22355667899999999887642 33 23556666777655
Q ss_pred C-cEEEEEEEEEee
Q 037989 90 K-GVLVLVTGYMSG 102 (432)
Q Consensus 90 ~-~vlV~V~G~l~~ 102 (432)
+ -|+|-..|.-+.
T Consensus 95 pd~vvvE~~~~g~i 108 (163)
T 3ff0_A 95 PNHFWVECDGHGKI 108 (163)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEE
Confidence 4 456556554443
No 264
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=88.20 E-value=3.6 Score=33.87 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHH-HHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 037989 12 DPQLVGNSFVEQYFK-ALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCK 90 (432)
Q Consensus 12 ~~~~vg~~Fv~~YY~-~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~ 90 (432)
+.++|-.. .++||. +...+.+.|..+|.++-.+.+.+ | ...+..+..+.+.+-...-....+.....+...++
T Consensus 12 ~~~~I~~l-~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G---~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d 85 (134)
T 3fsd_A 12 PADDIAFY-EERLRAAMLTGDLKGLETLLADDLAFVDHT--G---CVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGED 85 (134)
T ss_dssp --CCHHHH-HHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTT
T ss_pred hHHHHHHH-HHHHHHHHHhCCHHHHHhhcCCCEEEECCC--C---cCccHHHHHHHHHcCCceEEEEEEeccEEEEeCCC
Confidence 33445444 455555 45589999999999986665543 2 33455555566664322223556666666666554
Q ss_pred cEEEEEEEEEee--CC-C---CceeEEEEEeeeeCCe--EEEEece
Q 037989 91 GVLVLVTGYMSG--KT-G---KRRFSQSFFLAPQENG--FFVLNDI 128 (432)
Q Consensus 91 ~vlV~V~G~l~~--~~-~---~~~F~qtF~L~p~~~~--y~V~nDi 128 (432)
..++...-.+.. ++ + ..+|+++| ...+++ |.|...-
T Consensus 86 ~Avv~~~~~~~~~~~g~~~~~~~~~t~vw--~k~~g~~gWriv~~h 129 (134)
T 3fsd_A 86 GRVVVVRAVTAGVYDGEAFTETLRFTRIW--RRTQGPAGWKLVAGH 129 (134)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE--EEETTTTEEEEEEEE
T ss_pred EEEEEEEEEEEEEeCCcEEEEEEEEEEEE--EECCCCccceEeEeE
Confidence 444333333322 33 2 22355555 456666 9987653
No 265
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.04 E-value=0.5 Score=37.80 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCC------CCccEEEEEeCCHHHHHHHHHhC-CCee
Q 037989 345 KNPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQL------RPNCFSFVEFESISSMQNALKAS-PITF 412 (432)
Q Consensus 345 ~~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g------~~~gfaFVeF~~~~~a~~Al~~~-~~~i 412 (432)
-.-+|-||.||+..|++++.+.++.+-.+ .+ ..-..| ...+-|||.|.+.+++..-.+.. |..|
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~---d~-~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAH---DY-FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSE---EE-CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCcc---ce-EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 35689999999999999887777655443 22 111112 12356899999999999998888 7765
No 266
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=87.96 E-value=1.9 Score=35.34 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC-C--CcceEEEeeeeeeeeCCCcEEE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD-Y--QNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~-~--~~~~~~I~s~d~q~s~~~~vlV 94 (432)
+-|..|+..++ .+.+.|.+-|++.+.|...+ +|.. .....++-.+ +..-| . .....+|.++|..- +.-++
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~-~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g---d~A~a 86 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGEL-LWNSRDAFIA-MCEDAADAETDPFWAISSVSVQG---DIAML 86 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEE-EEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET---TEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcE-EEcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC---CEEEE
Confidence 34889999998 67779999999999875433 2331 1223344444 43222 1 22356677777532 33334
Q ss_pred EEEEEEeeCCCCceeEEEEEeeeeCCeEEEEeceEEe
Q 037989 95 LVTGYMSGKTGKRRFSQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 95 ~V~G~l~~~~~~~~F~qtF~L~p~~~~y~V~nDifr~ 131 (432)
.|.-.+ ..+.|+..|.|...+++|.|.|=+|++
T Consensus 87 ~v~~~~----~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 87 HVENDW----AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EEEEEE----TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEc----CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 343111 457899999999999999999999986
No 267
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=87.80 E-value=7.2 Score=32.16 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
....|+.||..++ .+.+.|..||.++..+...+. ..+.|.++|.+.+..+.
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~~ 75 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGLF 75 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHHH
Confidence 4567889999887 466799999999998876653 25789999999888763
No 268
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=87.41 E-value=0.69 Score=38.83 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcc-CcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 037989 17 GNSFVEQYFKALHQ-YPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 17 g~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~~vl 93 (432)
...|.-.|-..|.. +...|.+||+.+|.+.-... .+..+|...|...|... ..-.....|++ .++.|-|
T Consensus 22 EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta---~~~YtG~r~Ii~Fl~RaH~gvLey~fnieH-----mfnsGsL 93 (154)
T 3gzb_A 22 EQQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTA---NRKYTGGRFIIDFLERAHQGVLEYDFNIEH-----MYNAGSL 93 (154)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTT---TEEEESHHHHHHHHHHHTTTCCCCEEEEEE-----EEEETTE
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhCccceeeeecc---CcceeCcHHHHHHHHHHhhhheeeccChhh-----hccCCcE
Confidence 34566677777875 88999999999999873322 13899999999999863 22234455655 2344456
Q ss_pred EEEEEEEeeCCC
Q 037989 94 VLVTGYMSGKTG 105 (432)
Q Consensus 94 V~V~G~l~~~~~ 105 (432)
|+..|.-.++++
T Consensus 94 VVmiGnY~~kGP 105 (154)
T 3gzb_A 94 VVMIGNYHFKGP 105 (154)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEcceeecCc
Confidence 677787555553
No 269
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=87.29 E-value=2 Score=33.92 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
....++.||..++ .+.+.|..+|.++..+..... + ..+.|.++|.+.+..+.
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~-~--~~~~G~~~i~~~~~~~~ 59 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVG-S--EPRSGTAAIREFYANSL 59 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTT-S--CCEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCC-C--CCccCHHHHHHHHHHhc
Confidence 4678899999988 567799999999988776521 1 27889999999988763
No 270
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=87.26 E-value=3.1 Score=35.48 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVD 83 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d 83 (432)
-...|+.||..++ .+.+.|..||.++..+..... | ...|.++|.+.+..+ .|.+++++|..+-
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~ 101 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDLL 101 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4678999999988 467899999999877665432 2 568999998888764 4557788777544
No 271
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=86.80 E-value=6 Score=32.89 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCC-cceEEEeeeeeeeeCCCcEE
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQ-NYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~-~~~~~I~s~d~q~s~~~~vl 93 (432)
-....|+.||..++ .+.+.|..||.++..+...|. ..+.|.++|.+.+..+.-. +++++|..+-+ .++.++
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~~~---~g~~vv 88 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRIGA---DGAAVL 88 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEEEE---ETTEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEEEE---eCCEEE
Confidence 44678899999887 466799999999977764432 2678999999999887421 44555554432 123233
Q ss_pred EEEEEEEeeCC--CCceeEEEEEe
Q 037989 94 VLVTGYMSGKT--GKRRFSQSFFL 115 (432)
Q Consensus 94 V~V~G~l~~~~--~~~~F~qtF~L 115 (432)
+.....+..++ ....++..|.+
T Consensus 89 ~~~~~~~~~~G~~~~~~~~~~~~v 112 (149)
T 2bng_A 89 TERTDALIIGPLRVQFWVCGVFEV 112 (149)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCeEEEEEEEEEEEE
Confidence 33221233333 23445566655
No 272
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=86.73 E-value=4.9 Score=33.97 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=62.7
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEE
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKGVLVL 95 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~vlV~ 95 (432)
..|+.||..++ .+.+.|..||.++..+.-... | ..+.|.++|.+.+..+. |.++++.|..+-+. ++.+++.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~-g--~~~~Greai~~~~~~~~~~~~d~~~~v~~~~~~---gd~v~~~ 102 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAI-G--ATMTGREQISGWKARTDAMIENVHVTITKAYRA---GDHVTIE 102 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTT-T--EEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCC-C--ceEecchhhhhhhhhhhccCCccceeEeEEeec---CceEEEE
Confidence 46888999888 678899999999988763322 1 26889999999888753 44666666554332 3334443
Q ss_pred --EEEEEeeCC--CCceeEEEEEeeeeCCeEEEEeceE
Q 037989 96 --VTGYMSGKT--GKRRFSQSFFLAPQENGFFVLNDIF 129 (432)
Q Consensus 96 --V~G~l~~~~--~~~~F~qtF~L~p~~~~y~V~nDif 129 (432)
.+|.....+ ....++..|.+. +++..-..|.|
T Consensus 103 ~~~~gt~~~tG~~~~~~~~~v~~~~--dGkI~~~~~y~ 138 (158)
T 4h3u_A 103 AVYGGHIKGAPTPFAVPMATLLRTR--GEEITSDQDYY 138 (158)
T ss_dssp EEEEEEETTSSSCEEEEEEEEEEEE--TTEEEEEEEEE
T ss_pred EEEEEEecCccCcceeeeEEEEEEE--CCEEEEEEEEE
Confidence 334443223 233456666664 44443334444
No 273
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=85.75 E-value=3.2 Score=33.10 Aligned_cols=63 Identities=8% Similarity=0.029 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeee
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVD 83 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d 83 (432)
...|+.||..|+ .+.+.+..||.++........ .....|.++|.+.+..+ .+.+.+++|..+-
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~ 70 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDAQ 70 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 367899999997 566789999998866554321 12678999999887754 1235677776543
No 274
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=85.73 E-value=4.2 Score=32.94 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHccC-----cccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEe-eeeeee
Q 037989 18 NSFVEQYFKALHQY-----PEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEIL-TVDAQA 86 (432)
Q Consensus 18 ~~Fv~~YY~~l~~~-----p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~-s~d~q~ 86 (432)
..++++|+..++.. .+.|..+|.++..+.-+.. .+.|.++|...|..+ .|.+|++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 46778888877632 2479999999998886654 689999999988764 3568899887 666664
No 275
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=84.69 E-value=5 Score=33.19 Aligned_cols=60 Identities=7% Similarity=-0.069 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 10 KVDPQLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 10 ~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
....-++....++.||..|. .+.+.|..++.++..+.++|. +......|.++|.+.|..+
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYV 67 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHH
Confidence 35567789999999999987 677899999999998888774 3334688999998887765
No 276
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=84.46 E-value=10 Score=30.55 Aligned_cols=98 Identities=4% Similarity=-0.051 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCc
Q 037989 14 QLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL-DYQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl-~~~~~~~~I~s~d~q~s~~~~ 91 (432)
.+-..+.|+.||..++ .+.+.|..||.++..+...+.......+.|.++|.+.+..+ .|.+++++|..+-+ -++.
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~~~---~gd~ 92 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEETFV---AGDR 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEEEE---ETTE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEEEE---cCCE
Confidence 3456788999999887 67789999999998887654111112668999999988752 13466777665432 1232
Q ss_pred EEEEEEEEEeeCC-CCceeEEEEEee
Q 037989 92 VLVLVTGYMSGKT-GKRRFSQSFFLA 116 (432)
Q Consensus 92 vlV~V~G~l~~~~-~~~~F~qtF~L~ 116 (432)
++ +...+..+. ....++..|.+.
T Consensus 93 v~--~~~~~~~G~~~~~~~~~~~~~~ 116 (129)
T 3fh1_A 93 AT--IRWRYWMADGNSVRGVNLMRVQ 116 (129)
T ss_dssp EE--EEEEEECTTSCEEEEEEEEEEE
T ss_pred EE--EEEEEECCCeeEEeceEEEEEc
Confidence 33 333343323 344455556554
No 277
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=84.24 E-value=5.6 Score=33.50 Aligned_cols=61 Identities=8% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTV 82 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~ 82 (432)
....|+.||..++ .+.+.|..+|.++..+..+. | ....|.++|.+.+..+. ......+..+
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~~-~~~~~~~~~~ 83 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKMN-RCYRERLADI 83 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH-HHEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHHH-HhhccceeEE
Confidence 4678899999887 57789999999998864322 2 27889999999888663 2223444443
No 278
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=84.05 E-value=0.88 Score=38.72 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=25.0
Q ss_pred EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 376 NGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 376 ~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
+.|.++.. +.+|||||+|.+.+.+++|++.+
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhh
Confidence 34555543 58999999999999999999875
No 279
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=83.84 E-value=14 Score=30.18 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTV 82 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~ 82 (432)
-.+-|+.||..|. .+.+.|..||.++..+.++.. .....|.++|.+++...+-....++|..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~---~~~~~Gr~~~~~~~~~~~~~~~~~~i~~~ 70 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQS---GERILGRMNLQALRSHHPGKPAGFEVRRI 70 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTT---TEEEESHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCC---CCEEECHHHHHHHHHHCCCCCcceEEEEE
Confidence 4567899999887 567899999999999887643 12678999999988877632222555543
No 280
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=82.76 E-value=7.8 Score=31.82 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCC-CCCccceeccHHHHHHHHhcC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPG-PDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~-~~g~~~~~~g~~~I~~~~~sl 70 (432)
-...|+.||..++ .+.+.|..||.++..+.... ..|....+.|.++|.+.+..+
T Consensus 12 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 12 ACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHh
Confidence 4567899999887 55679999999998887642 123323688999999998876
No 281
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=82.45 E-value=6.4 Score=32.92 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
-...|+.||..+. .+.+.|..||.++..+...+.........|.++|.+.+..+
T Consensus 22 n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 22 TIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 3566788888777 56778999999998887765421223578999999987764
No 282
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=82.11 E-value=3 Score=33.55 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeee
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTV 82 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~ 82 (432)
-....+..||..++ .+.+.|..+|.++..+...+. ...+.|.++|.+.+..+ .+.+.+++|..+
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~---~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~ 74 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG---QPPIHGREQIAAFYRQGLGGGKVRACLTGPV 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT---SCCEEHHHHHHHHHHHHHSSSCCEEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC---CCCcccHHHHHHHHHHHhhccceeEeecceE
Confidence 34678899999998 467799999999988776532 12788999999988775 233444544443
No 283
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=82.02 E-value=14 Score=30.84 Aligned_cols=97 Identities=7% Similarity=-0.021 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccCc--ccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEE
Q 037989 19 SFVEQYFKALHQYP--EHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 19 ~Fv~~YY~~l~~~p--~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~q~s~~~~vlV 94 (432)
+-++.||..+.+.. +.|..||.++..+.-+.. ..+....|.++|.+++..+. +..|.++|..+-+ .++.+.+
T Consensus 24 evv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~-~~~~~~~G~eai~~~~~~~~~~~~~~~~~i~~~~v---~gd~v~v 99 (136)
T 3hk4_A 24 EIAKDFTELLKQGDNAGAAEKYNADDIASYEAME-GPMAVSHGKEALRQKSQWWQENHEVHGGSVEGPYV---NGDQFAL 99 (136)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSC-STTSEEESHHHHHHHHHHHHHTEEEEEEEEEEEEE---ETTEEEE
T ss_pred HHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCC-CCccccCCHHHHHHHHHHHHhcCCeeeeeecceEE---cCCEEEE
Confidence 34667777777654 358999999988876543 11236789999999887542 3334445543322 2454555
Q ss_pred EEEEEEeeC-C-CCceeEEEEEeeeeC
Q 037989 95 LVTGYMSGK-T-GKRRFSQSFFLAPQE 119 (432)
Q Consensus 95 ~V~G~l~~~-~-~~~~F~qtF~L~p~~ 119 (432)
.-+...+.. + .+..+...-++.=.+
T Consensus 100 ~~~~~gth~~tG~~i~~~~i~v~rv~D 126 (136)
T 3hk4_A 100 RFKFDVTPKATGERVTMDEVGLYTVKN 126 (136)
T ss_dssp EEEEEEEETTTCCCEEEEEEEEEEEET
T ss_pred EEEEEEEECCCCcEEEEEEEEEEEEEC
Confidence 555544444 3 555565555554433
No 284
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=81.71 E-value=12 Score=29.87 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCC---CCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGP---DGVMTSITTMKEINDQILSLD--YQNYQTEILTV 82 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~---~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~ 82 (432)
.+-|++||..++ .+.+.+..+|.++..+...+. .+......|.++|.+.+..+. |.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 345788888887 467799999999877665421 000137889999999988763 44556666554
No 285
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=80.87 E-value=12 Score=30.32 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
....|+.||..++ .+.+.|..+|.++..+..++ | ....|.++|.+.+..+.
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~--~--~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ--G--PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC--C--CceEcHHHHHHHHHHHh
Confidence 3578999999987 57889999999997655442 1 27889999999888764
No 286
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=80.68 E-value=15 Score=29.81 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHH-HHHhcCC--CCcceEEEeeee
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEIN-DQILSLD--YQNYQTEILTVD 83 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~-~~~~sl~--~~~~~~~I~s~d 83 (432)
.+.|+.||..|. .+.+.|..+|.++..+...+.........|.++|. ..+..+. |.+++++|..+-
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDALH 84 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEEE
Confidence 456888888887 56779999999998876654211123678999996 5565542 345566666543
No 287
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=80.32 E-value=17 Score=30.09 Aligned_cols=63 Identities=5% Similarity=0.029 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
....|++||..++ .+.+.|..||.++..+..... ...|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDED-----KPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS-----CEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCCC-----CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4567888898886 455689999999877665322 678999998887764 24477888776543
No 288
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=80.19 E-value=7.6 Score=32.78 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeee-c--CCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc-E
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLS-R--PGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKG-V 92 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~-~--~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~-v 92 (432)
..++++|...+. .+-+.+.++|.++-++. + .|. .+.|++.+...+.....+...+++.....+...++. |
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~-----~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av 89 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGN-----LIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAAC 89 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC-----CEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCc-----cccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEE
Confidence 366788888776 77789999998775542 3 233 678998888554432333567788887777765243 3
Q ss_pred EEE--EEEEEeeCC--CCceeEEEEEeeeeCCeEEEEeceEEee
Q 037989 93 LVL--VTGYMSGKT--GKRRFSQSFFLAPQENGFFVLNDIFRFV 132 (432)
Q Consensus 93 lV~--V~G~l~~~~--~~~~F~qtF~L~p~~~~y~V~nDifr~~ 132 (432)
+.. .++....++ ....+--|.++...+++|.|...-...+
T Consensus 90 ~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~H~S~~ 133 (143)
T 2f86_B 90 VAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHRSTQ 133 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred EEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEEeECCC
Confidence 322 233333233 4445777888888899999998777543
No 289
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=79.63 E-value=1.7 Score=35.45 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
....|+.||..+. .+.+.|..+|.++..+...+...-.....|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 3567888888887 46789999999998877665211123678999998888765
No 290
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=79.28 E-value=12 Score=30.57 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCC-cceEEEeeeee
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQ-NYQTEILTVDA 84 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~-~~~~~I~s~d~ 84 (432)
...|++||..++ .+.+.|..||.++..+...+.. ....|.++|.+.+..+ .|. +++++|..+-+
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 72 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEH---GIHTGPKAFAQLVGWVRATFSEEARLEEVRIEE 72 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGG---TCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCC---CCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEE
Confidence 467889999887 5677999999998766544321 1237999999888765 245 67788776544
No 291
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=79.00 E-value=14 Score=31.10 Aligned_cols=66 Identities=6% Similarity=0.066 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHH-HHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeeeee
Q 037989 13 PQLVGNSFVEQYFK-ALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTVDA 84 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~-~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~d~ 84 (432)
..+--...|+.||. .++ .+.+.|..||.++......+ ...|.+++.+.+..+- |.+.+++|..+-+
T Consensus 25 ~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~iia 94 (148)
T 3g0k_A 25 EEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRSFV 94 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 44556788999999 665 66789999999885544333 3479999988877652 3466777765443
No 292
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=77.76 E-value=22 Score=29.76 Aligned_cols=62 Identities=6% Similarity=0.049 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
....|+.||..++ .+.+.+..||.++..+...+ ...|.++|.+.+..+ .|.+++++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIMA 70 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4567889999877 46678999999997776632 678999999887764 24577888876543
No 293
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=77.30 E-value=18 Score=28.88 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
...|+.||..++ .+.+.|..||.++..+. | ...|.+++.+.+..+ .|.+++++|..+-+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~~--~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 67 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEHN--G------RPFGLSGYRDMLVKDFADIPDLRFEAEILVS 67 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEET--T------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEeC--C------CCCCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 467889999887 56678999999886543 3 457899998887754 34577777776543
No 294
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=77.11 E-value=18 Score=30.58 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCC-CCccceeccHHHHHHHHhcCC
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGP-DGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~-~g~~~~~~g~~~I~~~~~sl~ 71 (432)
...|+.||..|+ .+.+.|..+|.++..+...+. .|....+.|.++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 456788999888 466799999999988876532 232336889999999987663
No 295
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=76.63 E-value=30 Score=28.37 Aligned_cols=108 Identities=7% Similarity=0.012 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCc
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL---DYQNYQTEILTVDAQASYCKG 91 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl---~~~~~~~~I~s~d~q~s~~~~ 91 (432)
--..|+..|...|+ .+.+.+..+|.++..+...+ | ...|.++|.+.+... ....+.|.|..+..... ++
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~-~d- 83 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGN-YD- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEC-SS-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEe-CC-
Confidence 45689999999999 56678999999988776552 2 348999998887642 11235777776665332 22
Q ss_pred EEEEEEEEEe--e-CCCCcee--EEEEEeeeeCCeEEEEeceEEe
Q 037989 92 VLVLVTGYMS--G-KTGKRRF--SQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 92 vlV~V~G~l~--~-~~~~~~F--~qtF~L~p~~~~y~V~nDifr~ 131 (432)
...+.+.+. . .+....+ .-...|...+++|.|..-.+.+
T Consensus 84 -~a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~~~ 127 (144)
T 2rgq_A 84 -EATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQIEV 127 (144)
T ss_dssp -EEEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -EEEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 223333322 1 1111111 1233455667889888866643
No 296
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=75.93 E-value=25 Score=29.26 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCC-cceEEEeeeee
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQ-NYQTEILTVDA 84 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~-~~~~~I~s~d~ 84 (432)
....|+.||..++ .+.+.|..||.++..+...+. + ....|.++|.+.+..+ .|. +++++|..+-+
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~-~--~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~ 81 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLE-F--TSLRGPELFAINVAWVKKTFSEEARLEEVGIEE 81 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTT-T--CCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCC-C--CCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEE
Confidence 4567889999887 567799999999866654443 1 1247999999888765 355 67888776543
No 297
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=75.89 E-value=22 Score=28.62 Aligned_cols=63 Identities=6% Similarity=-0.027 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCC----CccceeccHHHHHHHHhcCC--CCcceEEEe
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPD----GVMTSITTMKEINDQILSLD--YQNYQTEIL 80 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~----g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~ 80 (432)
....+..||..++ .+.+.|..+|.++..+...... +....+.|.++|.+.+..+. + ++++.+.
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~ 78 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCE 78 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEecc
Confidence 3457889999998 4677999999999877643210 00113789999999998763 3 4555443
No 298
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=75.54 E-value=25 Score=29.21 Aligned_cols=110 Identities=8% Similarity=-0.021 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDAQASYCKGVLV 94 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~q~s~~~~vlV 94 (432)
..++..|...|+ .+.+.+..+|.++..+.+.+. ....|.++|.+.+..+ ++..+.|.|..+......++...+
T Consensus 14 ~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A~~ 89 (150)
T 3ef8_A 14 ERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEANV 89 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEEEE
Confidence 568889999998 567799999999988765432 1478999999988765 234456666665554433332222
Q ss_pred EEEEEE--eeC-CCCcee---EEEEEeeeeCCeEEEEeceEEe
Q 037989 95 LVTGYM--SGK-TGKRRF---SQSFFLAPQENGFFVLNDIFRF 131 (432)
Q Consensus 95 ~V~G~l--~~~-~~~~~F---~qtF~L~p~~~~y~V~nDifr~ 131 (432)
...-.+ ... +....+ .-...|...+++|.|..=.+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~gry~d~~~r~dg~Wri~~r~~~~ 132 (150)
T 3ef8_A 90 RSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRT 132 (150)
T ss_dssp EEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 222111 111 211111 1223345567889888877744
No 299
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=73.77 E-value=24 Score=29.34 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=66.9
Q ss_pred HccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCCcEEEEEEEEEeeCCCC
Q 037989 28 LHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD-YQNYQTEILTVDAQASYCKGVLVLVTGYMSGKTGK 106 (432)
Q Consensus 28 l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~-~~~~~~~I~s~d~q~s~~~~vlV~V~G~l~~~~~~ 106 (432)
-..+++.+..+|.++.++--.- + ...+.|.++|..+|..+. -..|+++|.....|-..+-+++-.+. ....++..
T Consensus 28 ~~gD~~~~~~lyapDvt~fDp~--~-~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~~y~l-~~~~~~~~ 103 (134)
T 3ke7_A 28 ASTDPMAFVELSDTDVIYFDPS--L-ETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVLTFNL-DSYLSDKV 103 (134)
T ss_dssp HCSCTTHHHHHEEEEEEEECTT--C-SSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEEEEEE-EEEETTEE
T ss_pred hCCCHHHHHHhcCCCEEEEcCC--C-ccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEEEEEE-EEeeCCCc
Confidence 3478889999999886653111 1 126889999999998743 13368889888777754444432211 11122233
Q ss_pred ceeEEEEEeeee-CCeEEEEeceEEee
Q 037989 107 RRFSQSFFLAPQ-ENGFFVLNDIFRFV 132 (432)
Q Consensus 107 ~~F~qtF~L~p~-~~~y~V~nDifr~~ 132 (432)
...-.|+++... +++|.|.+.-..++
T Consensus 104 ~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 104 IKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred EEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 456788999999 89999999887665
No 300
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=71.23 E-value=40 Score=27.39 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHHHHH-HHc-cCcccccccccCCCe-eecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 18 NSFVEQYFK-ALH-QYPEHLHRFYQDSSF-LSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 18 ~~Fv~~YY~-~l~-~~p~~l~~fY~~~S~-l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
...|++||. .++ .+.+.|..||.++.. ....+. .......|.++|.+.+..+ .|.+++++|..+-+
T Consensus 9 ~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~-~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 79 (146)
T 3f9s_A 9 KEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFA 79 (146)
T ss_dssp HHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC-TTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC-CCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEE
Confidence 567888886 665 577899999999987 443321 0112578999998888765 35577888876543
No 301
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=71.20 E-value=9.4 Score=31.94 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CC-cceEEEeee
Q 037989 16 VGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQ-NYQTEILTV 82 (432)
Q Consensus 16 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~-~~~~~I~s~ 82 (432)
-....|++||..++ .+.+.|..||.++..+...+.......+.|.++|.+.+..+. +. +.+++|..+
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 45678999999887 566799999999987766553111235789999988887642 11 455666554
No 302
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=70.23 E-value=1.7 Score=36.67 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=33.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHhC--CCeeCCeEEEEEEccC
Q 037989 386 RPNCFSFVEFESISSMQNALKAS--PITFGDRKVYVEQKKG 424 (432)
Q Consensus 386 ~~~gfaFVeF~~~~~a~~Al~~~--~~~i~Gr~l~Ve~ar~ 424 (432)
.-+|+++|+|.+.+.+++|++.+ +..++| .+.+..++.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999887 778999 899988765
No 303
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=67.47 E-value=24 Score=28.90 Aligned_cols=64 Identities=8% Similarity=-0.012 Sum_probs=46.9
Q ss_pred HHHHHHHHHH-HHc-cC--cccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 037989 17 GNSFVEQYFK-ALH-QY--PEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL--DYQNYQTEILTVDA 84 (432)
Q Consensus 17 g~~Fv~~YY~-~l~-~~--p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl--~~~~~~~~I~s~d~ 84 (432)
-.+.|+.||. .++ .+ .+.|..||.++..+..+.. ....|.++|.+.+..+ .|.+++++|..+-+
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 80 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVTV 80 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEEE
Confidence 3577899999 676 44 6789999999977775442 2678999998887765 35577888876543
No 304
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=62.43 E-value=11 Score=30.22 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
...|+.||..++ .+.+.|..++.++..+...+. ...|.+++...+..+-
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 355777787777 667799999999977776553 6889999999988764
No 305
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=61.47 E-value=56 Score=25.54 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCcEEEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL-DYQNYQTEILTVDAQASYCKGVLVL 95 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl-~~~~~~~~I~s~d~q~s~~~~vlV~ 95 (432)
...|+.||..++ .+.+.+..+|.++..+..... .....|.++|.+.+..+ .-.+.+++|..+-+ . ++.| .
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g---~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~~--~-gd~v--~ 77 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPA---TLLAGNAAEIRVRHIERFKEPDLYGELLTRVI--V-GNVV--I 77 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTT---EEEEESHHHHHHHHHHHTTCTTCEEEEEEEEE--E-TTEE--E
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCC---CcccCCHHHHHHHHHHHcCCCCcEEEEEEEEE--E-CCEE--E
Confidence 467899999987 466789999999987654321 12478999999988753 22345566554432 2 3323 3
Q ss_pred EEEEEeeC--C--CCceeEEEEEe
Q 037989 96 VTGYMSGK--T--GKRRFSQSFFL 115 (432)
Q Consensus 96 V~G~l~~~--~--~~~~F~qtF~L 115 (432)
+...++.. + ....+...|.+
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~vf~v 101 (123)
T 2k54_A 78 DHETVTRNFPEGKGEVDVACIYEV 101 (123)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEEE
T ss_pred EEEEEEeECCCCceEEEEEEEEEE
Confidence 34444432 2 23455666666
No 306
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=61.09 E-value=8.2 Score=31.16 Aligned_cols=96 Identities=11% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHH-HHhcCC--CCcceEEEeeeeeeeeCCCcEE
Q 037989 18 NSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEIND-QILSLD--YQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 18 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~-~~~sl~--~~~~~~~I~s~d~q~s~~~~vl 93 (432)
.+.|+.||..|. .+.+.|..+|.++..+...+..--.....|.++|.+ .+..+. |.++++.|..+ +...+|. .
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gd-~ 83 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMY--HEVSGKD-V 83 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEE--EEBTTSS-E
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhe--eeecCCC-E
Confidence 356788888776 456789999999987765542111236789999975 555442 34555666544 2233443 2
Q ss_pred EEEEEEEee----CC--CCceeEEEEEee
Q 037989 94 VLVTGYMSG----KT--GKRRFSQSFFLA 116 (432)
Q Consensus 94 V~V~G~l~~----~~--~~~~F~qtF~L~ 116 (432)
|.|.|.+.. .+ ....|+..|.+.
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~v~~~~ 112 (134)
T 3grd_A 84 IIAEGMYSGVYKDTGKSFEAEFVHVWQLE 112 (134)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred EEEEEEEeeEECCCCCEeeeeEEEEEEEE
Confidence 334444432 12 233456666653
No 307
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=53.02 E-value=12 Score=31.33 Aligned_cols=53 Identities=6% Similarity=0.083 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 15 LVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
.....++..||..+. .+.+.|..+|.++..+.-+-. ...+.|.++|...|..+
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 345778999999887 567899999999988875331 12788999999998765
No 308
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=52.44 E-value=94 Score=26.50 Aligned_cols=70 Identities=6% Similarity=-0.003 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC--CCcceEEEeee
Q 037989 11 VDPQLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD--YQNYQTEILTV 82 (432)
Q Consensus 11 ~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~--~~~~~~~I~s~ 82 (432)
.-+.+.-...|+.||..++ .+.+.|..||.++..+..++.. ......|.++|.+.+..+. + +.++.|..+
T Consensus 6 ~Ms~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~-p~~~~~Greai~~~f~~~~~~~-d~~~~~e~i 78 (156)
T 3g16_A 6 TLSRAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGM-YGGAFRGAAQIAHRWRTAVETL-GSYWTIDAL 78 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTS-TTSCEESHHHHHHHHHHHHHHH-CEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCC-CCCCccCHHHHHHHHHHHHhhc-CceEEEEEE
Confidence 3446778899999999998 5677999999999888765410 1236789999999987653 2 334555443
No 309
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=50.85 E-value=23 Score=33.23 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 17 GNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 17 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
...+|+.||..++ .+.+.|..+|.++..+..+-. .....|.++|...|..+
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 5678999999998 678899999999998886521 12678999999999865
No 310
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=50.67 E-value=87 Score=29.16 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCC
Q 037989 13 PQLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLD 71 (432)
Q Consensus 13 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~ 71 (432)
..+-...+|+.||..|+ .+.+.|..+|.++..+..+-. .....|.++|.+.|..+-
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHhh
Confidence 34566789999999998 678899999999998876521 126899999999988763
No 311
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.67 E-value=37 Score=34.87 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=42.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC
Q 037989 346 NPVIFVANLPMDVTADQIKSVFVKFGPIKANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS 408 (432)
Q Consensus 346 ~~~vfV~NLp~~vte~~L~~~F~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~ 408 (432)
...++|+ ++..+...+|.++|+.||.+. +.+ + ....+||.|.+.+.+..+++.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~w-i------ddt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISW-I------DDTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEE-C------SSSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEE-E------cCCeEEEEECCHHHHHHHHHHH
Confidence 4677776 888999999999999999653 333 1 2346999999999999988876
No 312
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=42.47 E-value=1.6e+02 Score=25.17 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecC---C-CCCccceeccHHHHHHHHhcCC-----CCcceEEEeeee
Q 037989 14 QLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRP---G-PDGVMTSITTMKEINDQILSLD-----YQNYQTEILTVD 83 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~---~-~~g~~~~~~g~~~I~~~~~sl~-----~~~~~~~I~s~d 83 (432)
..--..++..|...++ .+.+.+..+|.++..+.+. | ..|....+.|.++|.+.+...- +..+.|-|....
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~ 104 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPI 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCE
Confidence 3444678889999998 6678999999999887653 2 2223357889999999987642 444566666555
Q ss_pred ee
Q 037989 84 AQ 85 (432)
Q Consensus 84 ~q 85 (432)
.-
T Consensus 105 I~ 106 (179)
T 3ejv_A 105 IV 106 (179)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 313
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=39.52 E-value=1.6e+02 Score=24.17 Aligned_cols=48 Identities=6% Similarity=0.057 Sum_probs=36.5
Q ss_pred HHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 19 SFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 19 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
+.|+.||..++ .+.+.|..+|.++........ ....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~~----~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNEG----NIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCCC----cceeCHHHHHHHHHHH
Confidence 35889999987 677899999999887332221 2688999999988854
No 314
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=39.06 E-value=36 Score=33.73 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHH---------HHHHHccCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCC----------
Q 037989 12 DPQLVGNSFVEQ---------YFKALHQYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDY---------- 72 (432)
Q Consensus 12 ~~~~vg~~Fv~~---------YY~~l~~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~---------- 72 (432)
+.---|++|++. |...|-.+++.+.+||.+.+.|...+ ....|...|..|+-
T Consensus 173 T~~GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~~E---------e~~~il~~L~gLn~vDf~~f~~~~ 243 (384)
T 3cwz_B 173 TDVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDD---------EKEQFLYHLLSFNAVDYFCFTNVF 243 (384)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTCHH---------HHHHHHHHHGGGGSSCCCTTTTTC
T ss_pred CCCcchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcCcc---------hhhhhhhhcccccccchhhccccc
Confidence 334467888774 99999999999999999998887433 24566666665531
Q ss_pred --CcceEEEeeeeeeee----CCCcEEEEEEEEE
Q 037989 73 --QNYQTEILTVDAQAS----YCKGVLVLVTGYM 100 (432)
Q Consensus 73 --~~~~~~I~s~d~q~s----~~~~vlV~V~G~l 100 (432)
..+.+.|.-...--. .+..|.|.+.|.-
T Consensus 244 Ttt~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~ 277 (384)
T 3cwz_B 244 TTILIPYHILIVPSKKLGGSMFTANPWICISGEL 277 (384)
T ss_dssp TTSEEEEEEEEEECCCCCSCCCCSCEEEEEEESS
T ss_pred cccceeEEEEEEeCCCCCCCCCCCcEEEEEEeCC
Confidence 234444443322221 2235999999865
No 315
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=32.77 E-value=2.9e+02 Score=25.56 Aligned_cols=88 Identities=20% Similarity=0.213 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 037989 15 LVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSLDYQNYQTEILTVDAQASYCKGVL 93 (432)
Q Consensus 15 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl~~~~~~~~I~s~d~q~s~~~~vl 93 (432)
.=...|+..||.... .+...|..|..+...+...|. . +- -.+|..+.....-+..|.
T Consensus 155 ~~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l~gL~g--~----------------~~----f~~l~~~~vy~~~~~~v~ 212 (261)
T 3ub1_A 155 KKITDSVSQFFKAYYEQNQTQIDYFLVDGADIKGAGQ--K----------------FS----FNKIDRINIYKLSDKEFL 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHTTBCTTCCCCCCCS--C----------------CE----EEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHhcCCCcccCCCC--c----------------EE----EEEeccEEEecCCCcEEE
Confidence 345699999999996 567788877777765432221 1 11 112222222222234465
Q ss_pred EEEEEEEeeCCCCceeEEEEEe--eeeCCeEEEEe
Q 037989 94 VLVTGYMSGKTGKRRFSQSFFL--APQENGFFVLN 126 (432)
Q Consensus 94 V~V~G~l~~~~~~~~F~qtF~L--~p~~~~y~V~n 126 (432)
+.|+=.+.-.+. +.+|.|.| ..++++|||..
T Consensus 213 a~V~v~~~d~~t--~~~e~y~L~L~k~~~~w~V~~ 245 (261)
T 3ub1_A 213 AIVDLNVDSFGN--AIKQGFNLTVVQEGDKFLVKT 245 (261)
T ss_dssp EEEEEEEEETTE--EEEEEEEEEEEEETTEEEECC
T ss_pred EEEEEEEcCCCc--eEEEEEEEEEEECCCeEEEEe
Confidence 555544433332 23676665 56678999853
No 316
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.59 E-value=77 Score=23.02 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=38.7
Q ss_pred EEEEc-CCCCCCcHHHHHHHhhcCCCeE-----EEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHhC-CCeeCCeEEEEE
Q 037989 348 VIFVA-NLPMDVTADQIKSVFVKFGPIK-----ANGIRIRTNQLRPNCFSFVEFESISSMQNALKAS-PITFGDRKVYVE 420 (432)
Q Consensus 348 ~vfV~-NLp~~vte~~L~~~F~~fG~I~-----~~~v~~~~~~g~~~gfaFVeF~~~~~a~~Al~~~-~~~i~Gr~l~Ve 420 (432)
++||. +--..++..+|..++..-+.|. .+.| ...|.||+... ..+..++..+ +..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i--------~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI--------MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE--------CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE--------eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 2233467778888887655543 2233 23578888864 4466777877 778999999988
Q ss_pred Ecc
Q 037989 421 QKK 423 (432)
Q Consensus 421 ~ar 423 (432)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 317
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=29.97 E-value=48 Score=27.89 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHc-cCcccccccccCCCeeecCCCCCccceeccHHHHHHHHhcC
Q 037989 14 QLVGNSFVEQYFKALH-QYPEHLHRFYQDSSFLSRPGPDGVMTSITTMKEINDQILSL 70 (432)
Q Consensus 14 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~g~~~~~~g~~~I~~~~~sl 70 (432)
......+++.||..+. .+.+.|..+|.++..+.-.-. ...+.|.+.|...|..+
T Consensus 19 ~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 19 NAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 4677889999999888 567799999999988874321 13688999999998765
No 318
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.87 E-value=1.6e+02 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=37.2
Q ss_pred EEEEcCCCC---------CCcHHHHHHHh--hcCCCeEEEEEEeeCCCCCCccEEEEEeCC-HHHHHHHHHh
Q 037989 348 VIFVANLPM---------DVTADQIKSVF--VKFGPIKANGIRIRTNQLRPNCFSFVEFES-ISSMQNALKA 407 (432)
Q Consensus 348 ~vfV~NLp~---------~vte~~L~~~F--~~fG~I~~~~v~~~~~~g~~~gfaFVeF~~-~~~a~~Al~~ 407 (432)
.+.|-|++. ..+...|++.| +.|.+++-..+ .. . ..+.|++.|.|.+ ......|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~-~-~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WN-Y-LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-EC-S-SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-cc-C-CCCceeEEEEecCChHHHHHHHHH
Confidence 445566665 13457899977 99999874322 22 2 2367899999994 5666766553
Done!