Query 037991
Match_columns 560
No_of_seqs 324 out of 1295
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01697 Glyco_transf_92: Glyc 99.9 1.4E-25 3E-30 228.5 16.8 196 279-479 2-238 (285)
2 cd02511 Beta4Glucosyltransfera 99.8 5.9E-19 1.3E-23 174.9 17.8 221 281-547 1-227 (229)
3 PF13704 Glyco_tranf_2_4: Glyc 99.7 1.6E-17 3.6E-22 143.0 9.9 94 289-385 1-97 (97)
4 KOG4735 Extracellular protein 99.0 2E-11 4.3E-16 134.1 -5.5 257 201-475 125-409 (472)
5 PF00535 Glycos_transf_2: Glyc 98.8 7.2E-08 1.6E-12 87.6 13.5 104 283-388 1-106 (169)
6 cd04196 GT_2_like_d Subfamily 98.6 4.6E-07 1E-11 86.9 13.7 100 283-387 1-103 (214)
7 COG0463 WcaA Glycosyltransfera 98.6 3.8E-07 8.1E-12 82.8 11.0 97 279-378 2-100 (291)
8 PRK10073 putative glycosyl tra 98.6 3.9E-07 8.4E-12 95.9 12.4 103 280-385 6-110 (328)
9 PRK10063 putative glycosyl tra 98.6 5.8E-07 1.3E-11 90.8 12.5 93 280-376 1-98 (248)
10 cd06439 CESA_like_1 CESA_like_ 98.6 2.1E-06 4.6E-11 85.2 16.2 116 277-400 26-145 (251)
11 PRK11204 N-glycosyltransferase 98.5 1.4E-06 3E-11 94.1 14.4 115 279-398 53-169 (420)
12 cd06433 GT_2_WfgS_like WfgS an 98.5 1.9E-06 4E-11 81.3 13.5 93 283-380 1-95 (202)
13 cd06427 CESA_like_2 CESA_like_ 98.5 1.5E-06 3.1E-11 86.5 13.3 113 281-398 2-120 (241)
14 PLN02726 dolichyl-phosphate be 98.5 9.8E-07 2.1E-11 88.1 11.9 107 277-388 6-118 (243)
15 TIGR03111 glyc2_xrt_Gpos1 puta 98.5 1.6E-06 3.4E-11 94.8 13.6 114 279-397 48-165 (439)
16 cd04195 GT2_AmsE_like GT2_AmsE 98.4 3.3E-06 7.1E-11 80.7 13.2 108 283-396 1-113 (201)
17 cd06421 CESA_CelA_like CESA_Ce 98.4 4.4E-06 9.5E-11 81.5 14.3 113 281-399 2-120 (234)
18 TIGR03469 HonB hopene-associat 98.4 2.4E-06 5.3E-11 91.7 12.9 107 279-388 39-158 (384)
19 PTZ00260 dolichyl-phosphate be 98.4 2.3E-06 5E-11 90.3 12.5 109 277-387 67-189 (333)
20 cd06442 DPM1_like DPM1_like re 98.4 1.4E-06 3E-11 84.6 9.8 99 284-387 1-102 (224)
21 cd06434 GT2_HAS Hyaluronan syn 98.4 4.7E-06 1E-10 81.6 13.6 110 282-399 2-112 (235)
22 cd06437 CESA_CaSu_A2 Cellulose 98.4 5.1E-06 1.1E-10 81.8 13.8 114 281-401 2-124 (232)
23 PRK14583 hmsR N-glycosyltransf 98.4 4.6E-06 1E-10 91.2 14.4 115 280-399 75-191 (444)
24 PRK10714 undecaprenyl phosphat 98.4 2.7E-06 5.9E-11 89.5 11.5 104 280-388 6-115 (325)
25 cd04188 DPG_synthase DPG_synth 98.4 1.7E-06 3.7E-11 83.9 9.3 99 284-387 1-106 (211)
26 cd06423 CESA_like CESA_like is 98.3 1E-05 2.2E-10 73.3 13.4 108 285-397 2-112 (180)
27 cd04185 GT_2_like_b Subfamily 98.3 4.2E-06 9.1E-11 80.3 10.7 101 284-385 1-104 (202)
28 cd04179 DPM_DPG-synthase_like 98.3 2.4E-06 5.3E-11 80.2 8.8 99 284-387 1-103 (185)
29 cd04192 GT_2_like_e Subfamily 98.3 4E-06 8.8E-11 81.2 10.4 100 284-388 1-107 (229)
30 cd02525 Succinoglycan_BP_ExoA 98.3 5.7E-06 1.2E-10 81.2 11.2 101 282-388 2-106 (249)
31 cd06913 beta3GnTL1_like Beta 1 98.3 5.1E-06 1.1E-10 81.1 10.7 92 284-377 1-101 (219)
32 PRK13915 putative glucosyl-3-p 98.3 6.9E-06 1.5E-10 85.8 11.8 103 278-388 29-141 (306)
33 cd04184 GT2_RfbC_Mx_like Myxoc 98.3 8.7E-06 1.9E-10 77.7 11.6 103 281-388 2-108 (202)
34 cd06438 EpsO_like EpsO protein 98.3 6.4E-06 1.4E-10 78.3 10.6 99 284-388 1-106 (183)
35 cd02510 pp-GalNAc-T pp-GalNAc- 98.2 8.5E-06 1.8E-10 84.0 11.6 102 283-386 1-109 (299)
36 cd06436 GlcNAc-1-P_transferase 98.2 1.3E-05 2.8E-10 77.1 12.2 113 284-401 1-126 (191)
37 cd04186 GT_2_like_c Subfamily 98.2 1.7E-05 3.8E-10 72.4 12.5 96 284-387 1-98 (166)
38 PRK10018 putative glycosyl tra 98.2 1.2E-05 2.6E-10 83.0 12.4 103 280-386 5-111 (279)
39 cd02520 Glucosylceramide_synth 98.2 1.3E-05 2.8E-10 77.2 11.8 111 281-397 2-119 (196)
40 cd06435 CESA_NdvC_like NdvC_li 98.2 2.1E-05 4.6E-10 77.3 12.5 112 283-398 1-118 (236)
41 cd04187 DPM1_like_bac Bacteria 98.1 1.5E-05 3.2E-10 75.3 8.9 98 284-387 1-104 (181)
42 cd02526 GT2_RfbF_like RfbF is 98.0 3.5E-05 7.7E-10 75.5 10.8 88 285-376 2-91 (237)
43 cd06420 GT2_Chondriotin_Pol_N 98.0 4.2E-05 9.2E-10 71.7 10.2 100 284-388 1-104 (182)
44 TIGR03472 HpnI hopanoid biosyn 97.9 0.00012 2.7E-09 78.2 13.8 113 280-398 41-160 (373)
45 PF13641 Glyco_tranf_2_3: Glyc 97.8 5.8E-05 1.3E-09 73.6 8.5 115 281-401 2-123 (228)
46 PRK11498 bcsA cellulose syntha 97.8 0.00018 3.9E-09 84.3 13.0 116 280-405 260-381 (852)
47 cd00761 Glyco_tranf_GTA_type G 97.7 0.00069 1.5E-08 59.7 12.7 91 284-376 1-93 (156)
48 cd02522 GT_2_like_a GT_2_like_ 97.7 0.00018 3.9E-09 69.6 9.0 95 282-388 1-97 (221)
49 TIGR03030 CelA cellulose synth 97.6 0.00052 1.1E-08 79.7 12.4 119 280-405 131-270 (713)
50 TIGR01556 rhamnosyltran L-rham 97.4 0.0007 1.5E-08 68.9 9.6 93 288-388 2-98 (281)
51 PRK05454 glucosyltransferase M 97.2 0.0041 9E-08 71.8 13.5 122 278-403 122-260 (691)
52 COG1216 Predicted glycosyltran 97.1 0.0047 1E-07 64.2 12.4 114 280-398 3-119 (305)
53 COG1215 Glycosyltransferases, 97.1 0.0047 1E-07 66.5 12.7 106 280-391 54-165 (439)
54 PRK14716 bacteriophage N4 adso 97.1 0.0043 9.2E-08 69.3 11.9 99 278-376 64-174 (504)
55 cd04191 Glucan_BSP_ModH Glucan 96.8 0.014 2.9E-07 59.5 12.1 121 282-406 1-138 (254)
56 cd04190 Chitin_synth_C C-termi 96.8 0.0069 1.5E-07 60.7 9.6 95 284-401 1-111 (244)
57 PF06306 CgtA: Beta-1,4-N-acet 96.6 0.0067 1.5E-07 63.0 7.7 99 277-376 84-191 (347)
58 KOG4735 Extracellular protein 96.5 0.023 4.9E-07 62.8 11.8 207 180-401 28-259 (472)
59 KOG2978 Dolichol-phosphate man 96.2 0.021 4.5E-07 55.4 8.5 105 281-390 4-115 (238)
60 KOG2977 Glycosyltransferase [G 96.0 0.033 7.2E-07 57.1 9.3 104 278-387 65-184 (323)
61 PF10111 Glyco_tranf_2_2: Glyc 95.7 0.12 2.6E-06 53.1 12.0 98 284-386 2-111 (281)
62 cd02514 GT13_GLCNAC-TI GT13_GL 95.6 0.11 2.4E-06 55.1 11.3 113 282-399 2-136 (334)
63 PRK11234 nfrB bacteriophage N4 95.1 0.17 3.7E-06 59.0 11.8 100 277-376 60-171 (727)
64 PRK15489 nfrB bacteriophage N4 86.9 5.4 0.00012 46.6 11.6 99 278-376 69-179 (703)
65 PF04724 Glyco_transf_17: Glyc 85.6 18 0.0004 38.9 14.1 118 281-405 80-219 (356)
66 PF03452 Anp1: Anp1; InterPro 80.7 15 0.00032 38.1 10.5 110 276-387 21-167 (269)
67 PF11735 CAP59_mtransfer: Cryp 79.0 4.4 9.5E-05 41.2 6.1 42 288-329 8-56 (241)
68 COG2943 MdoH Membrane glycosyl 77.7 14 0.0003 41.6 9.6 118 277-398 141-275 (736)
69 PRK14503 mannosyl-3-phosphogly 68.8 30 0.00065 37.2 9.3 118 281-405 52-206 (393)
70 TIGR02460 osmo_MPGsynth mannos 67.9 34 0.00073 36.7 9.4 118 281-405 51-205 (381)
71 PF12804 NTP_transf_3: MobA-li 63.0 72 0.0016 29.1 9.9 90 290-388 22-111 (160)
72 KOG2791 N-acetylglucosaminyltr 56.2 1.7E+02 0.0037 31.4 12.0 51 278-330 115-166 (455)
73 PF09488 Osmo_MPGsynth: Mannos 53.5 49 0.0011 35.6 7.7 119 281-406 51-206 (381)
74 PRK14502 bifunctional mannosyl 52.0 80 0.0017 37.0 9.7 118 281-405 56-210 (694)
75 cd04181 NTP_transferase NTP_tr 51.5 65 0.0014 30.7 7.9 89 293-387 30-118 (217)
76 cd02540 GT2_GlmU_N_bac N-termi 50.9 48 0.0011 32.1 7.0 89 293-388 27-115 (229)
77 cd06915 NTP_transferase_WcbM_l 50.3 1.3E+02 0.0028 28.7 9.8 90 293-388 30-119 (223)
78 PF02485 Branch: Core-2/I-Bran 47.3 1.6E+02 0.0035 29.1 10.2 105 282-389 1-116 (244)
79 KOG2547 Ceramide glucosyltrans 47.0 1.9E+02 0.004 31.6 10.7 101 278-389 83-196 (431)
80 cd04182 GT_2_like_f GT_2_like_ 45.5 69 0.0015 29.7 6.9 93 291-389 25-117 (186)
81 PF03071 GNT-I: GNT-I family; 43.6 1E+02 0.0022 34.1 8.6 113 278-398 91-229 (434)
82 PF13733 Glyco_transf_7N: N-te 42.7 1.4E+02 0.0031 27.8 8.1 76 277-372 44-123 (136)
83 PF03314 DUF273: Protein of un 41.6 27 0.00058 34.9 3.4 36 351-387 31-67 (222)
84 KOG3737 Predicted polypeptide 37.0 1.2E+02 0.0027 33.1 7.6 93 279-374 154-254 (603)
85 TIGR03202 pucB xanthine dehydr 35.8 2.5E+02 0.0053 26.5 9.1 96 290-388 24-121 (190)
86 PF13712 Glyco_tranf_2_5: Glyc 35.1 55 0.0012 32.5 4.5 89 282-399 1-91 (217)
87 cd02517 CMP-KDO-Synthetase CMP 35.1 1.7E+02 0.0036 28.7 8.1 89 291-388 25-115 (239)
88 cd00899 b4GalT Beta-4-Galactos 32.7 1.8E+02 0.0039 29.2 7.7 71 280-372 2-78 (219)
89 PRK13368 3-deoxy-manno-octulos 32.3 1.7E+02 0.0037 28.6 7.6 86 292-388 27-114 (238)
90 PRK00753 psbL photosystem II r 31.8 49 0.0011 23.9 2.5 25 11-35 14-38 (39)
91 COG0036 Rpe Pentose-5-phosphat 29.2 2E+02 0.0043 29.0 7.3 52 278-334 60-111 (220)
92 TIGR00466 kdsB 3-deoxy-D-manno 28.1 4.2E+02 0.0092 26.4 9.7 87 292-388 24-113 (238)
93 PF13344 Hydrolase_6: Haloacid 27.6 97 0.0021 26.8 4.3 39 296-335 20-58 (101)
94 PRK00317 mobA molybdopterin-gu 27.5 4.4E+02 0.0096 24.8 9.3 87 290-388 28-114 (193)
95 PRK05450 3-deoxy-manno-octulos 27.1 2.2E+02 0.0048 27.9 7.4 90 290-388 25-116 (245)
96 cd02515 Glyco_transf_6 Glycosy 26.2 4.6E+02 0.01 27.3 9.4 97 278-378 32-141 (271)
97 TIGR03310 matur_ygfJ molybdenu 26.1 2.3E+02 0.0049 26.4 7.0 91 291-388 24-115 (188)
98 cd03174 DRE_TIM_metallolyase D 25.7 4.1E+02 0.009 26.3 9.2 96 286-387 71-186 (265)
99 cd06426 NTP_transferase_like_2 25.6 3.4E+02 0.0074 25.9 8.3 89 293-388 30-118 (220)
100 PF00682 HMGL-like: HMGL-like 25.3 5.5E+02 0.012 25.2 9.9 93 293-387 67-177 (237)
101 TIGR03552 F420_cofC 2-phospho- 24.9 3.5E+02 0.0076 25.6 8.1 84 296-389 34-117 (195)
102 KOG2882 p-Nitrophenyl phosphat 24.7 2.1E+02 0.0046 30.2 6.8 53 281-334 25-81 (306)
103 PRK14360 glmU bifunctional N-a 24.4 2.5E+02 0.0055 30.5 7.8 90 292-388 29-119 (450)
104 KOG3916 UDP-Gal:glucosylcerami 23.8 4.7E+02 0.01 28.2 9.1 74 224-302 97-173 (372)
105 PRK14353 glmU bifunctional N-a 22.5 2.2E+02 0.0047 31.0 6.9 89 293-387 34-123 (446)
106 TIGR02665 molyb_mobA molybdopt 22.4 2.7E+02 0.006 25.9 6.8 86 292-388 27-113 (186)
107 smart00481 POLIIIAc DNA polyme 22.1 2.2E+02 0.0048 22.2 5.1 41 294-334 16-56 (67)
108 TIGR00453 ispD 2-C-methyl-D-er 21.3 3.2E+02 0.0068 26.3 7.1 90 292-389 27-117 (217)
109 cd04189 G1P_TT_long G1P_TT_lon 20.8 6.6E+02 0.014 24.3 9.4 89 293-387 32-120 (236)
No 1
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=99.93 E-value=1.4e-25 Score=228.53 Aligned_cols=196 Identities=31% Similarity=0.602 Sum_probs=149.3
Q ss_pred CceEEEEEEecchHH--HHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCC---------------
Q 037991 279 DHEMCICTMLRNQAR--FIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWP--------------- 341 (560)
Q Consensus 279 ~~~lsVc~i~~NEa~--~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp--------------- 341 (560)
++.+|+.++++||.+ .|.|||+||+++|++||+||++++++++.++|+.|++.|. |+.++||
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~-v~~~~w~~~~~~~~~~~~~~~~ 80 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGY-VEVIPWPLRPKFPDFPSPFPDP 80 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCe-EEEEEcccccccCCcccchhhh
Confidence 356777779999965 9999999999999999999999999999999999999997 9999997
Q ss_pred ----CcchHHHHHHHHHHHccCCCcEEEEecCCceeecCC----cchHHHHHHhcCCCCCEeEEEEEeeee-----CCCC
Q 037991 342 ----WIKTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPS----GLILHDLIRNLSGDGSVAELRISCHSF-----GPSG 408 (560)
Q Consensus 342 ----~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~----~~sI~d~L~~~~~~~~v~ai~~~~~~f-----g~sg 408 (560)
+..+|..+++||++|++..++||+|+|+||||.|.. ..++.+++++.... .++++.+....+ ++.+
T Consensus 81 ~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (285)
T PF01697_consen 81 NSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNI-SAGAYSFRNSWFYKYEFGPSF 159 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhcccc-ceEEEEEeEEEEEecccCccc
Confidence 135789999999999999999999999999999988 45688888887652 567776654433 2222
Q ss_pred ceecCCCCeEeceeeccCC-------C-CCceEEEeCCccccceecceeeEE-eeC--CeEEEeecCeeeEEEeEeccCh
Q 037991 409 LKEVPKKGVMVGYTCRLAT-------P-ERHKSIVKPEALNSTLINVVHHFH-LRD--GFEYVNVNRSMLVINHYKYQVW 477 (560)
Q Consensus 409 ~~~~p~~~v~~~ft~r~~~-------p-~~~KsIvRp~~v~~~l~~~VH~~~-~~~--G~~~~~v~~~~~~I~HY~~rS~ 477 (560)
....+...+...+.++... + .+.|+|+||+++..+ .+|+.. ..+ |.....++...+.|+||+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~IvrP~~v~~~---~~H~~~~~~~~~~~~~~~v~~~~~~i~HYr~~~~ 236 (285)
T PF01697_consen 160 YESSPSQLVSSLYFKRFRKTGVKKTRPGHRSKSIVRPEKVNSM---GIHHPWKFYNSSGYKILHVPPEIALINHYRDKSW 236 (285)
T ss_pred cccchHHhhhcceeeeecccccccccccccceeecChhHeEEE---ecccceeecCCCCceEEEeCcceEEEeccccCcc
Confidence 2112222222222222111 1 236999999999876 578774 334 6666778899999999999884
Q ss_pred HH
Q 037991 478 EV 479 (560)
Q Consensus 478 e~ 479 (560)
.+
T Consensus 237 ~~ 238 (285)
T PF01697_consen 237 PE 238 (285)
T ss_pred cc
Confidence 43
No 2
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.81 E-value=5.9e-19 Score=174.88 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=141.6
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCC
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDV 360 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~ 360 (560)
.|+++++++||++.|.++|++...+ .++|+|+|++|+|+|.+|++++ |.+|....|.+.+.|. |.++.. ..
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~---~~~v~~~~~~g~~~~~---n~~~~~--a~ 71 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY---GAKVYQRWWDGFGAQR---NFALEL--AT 71 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc---CCEEEECCCCChHHHH---HHHHHh--CC
Confidence 3789999999999999999987533 4899999999999999999987 6666555555555554 455554 47
Q ss_pred CcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEe--eeeCCCCceecCCCCeEeceeeccCCCCCceEEEeCC
Q 037991 361 CNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISC--HSFGPSGLKEVPKKGVMVGYTCRLATPERHKSIVKPE 438 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~--~~fg~sg~~~~p~~~v~~~ft~r~~~p~~~KsIvRp~ 438 (560)
++||+++|+||++.+.....+.+++.+.+. ..+.+.. .+.+.. .... ...|.....+++..
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~rl~~~~ 134 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALLATDDY----DGYYVPRRNFFLGRW--IRHG-----------GWYPDRQLRLFRRG 134 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHHhCCCC----cEEEEEEEEEEcCee--eecC-----------CCCCCceEEEEECC
Confidence 889999999999987655556666655322 2333332 222211 1100 00112223333333
Q ss_pred ccccceecceeeEEeeCCeEEEeecCeeeEEEeEeccChHHHHHHHHhhhHHHHHHHHHhhccCCCCCCCCccccccc--
Q 037991 439 ALNSTLINVVHHFHLRDGFEYVNVNRSMLVINHYKYQVWEVFKDKFLRRVATYVADWQDTQNVGSKDRVPGLGTRAIE-- 516 (560)
Q Consensus 439 ~v~~~l~~~VH~~~~~~G~~~~~v~~~~~~I~HY~~rS~e~f~~K~~Ry~~~~~~~w~~~~~~~~k~r~p~l~~~~~~-- 516 (560)
..... ...+|+.....+... .. ..+.+.||.+.+++++..|.+||+.. ++++... +++...+....+.
T Consensus 135 ~~~~~-~~~vhe~~~~~~~~~-~~--~~~~~~H~~~~~~~~~~~K~~ry~~~----~a~~~~~--~~~~~~~~~~~~~~~ 204 (229)
T cd02511 135 KARFE-DGRVHEQVVVDGGVG-IV--LKGDILHYGYKSLEEFLEKHNRYSSL----EAKDLAA--KGKKRSLLKGLLLGR 204 (229)
T ss_pred CeEEC-CCcccceEEeCCCee-ec--CCCceeCCCCCCHHHHHHHHHHHHHH----HHHHHHH--cCCCccHHHHHHhhh
Confidence 22211 135777755444321 10 56789999999999999999999753 2222222 3334444444333
Q ss_pred CCCcccccccccchHHHHhhhh--hccCCCccc
Q 037991 517 PPDWSGRFCEVNDTALRDRVLE--YADPVTHLL 547 (560)
Q Consensus 517 p~~w~~~F~~~~~~~Lk~y~lr--Fldg~~G~~ 547 (560)
| ...|++.|++| |+||+.||.
T Consensus 205 ~----------~~~f~~~y~~~~~~l~G~~g~~ 227 (229)
T cd02511 205 P----------LLAFLKMYILKRGFLDGRAGFI 227 (229)
T ss_pred H----------HHHHHHHHHHhcccCCchhchh
Confidence 3 23569999999 999999974
No 3
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=99.73 E-value=1.6e-17 Score=143.05 Aligned_cols=94 Identities=35% Similarity=0.604 Sum_probs=75.9
Q ss_pred cchHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCC--cchHHHHHHHHHHHccCCCcEEEE
Q 037991 289 RNQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPW--IKTQEAGFAHCALRARDVCNWVGF 366 (560)
Q Consensus 289 ~NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~--~~~Q~~a~ndCl~r~~~~~dWVlf 366 (560)
|||+.+|++||+||+.+|+++|||||++|+|+|.++|+++.+.+ +.....|. ...|....+.|+.++ ...+|+++
T Consensus 1 rne~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~--i~~~~~~~~~~~~~~~~~~~~~~~~-~~~dWvl~ 77 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVG--IIRWVDPYRDERRQRAWRNALIERA-FDADWVLF 77 (97)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcE--EEEeCCCccchHHHHHHHHHHHHhC-CCCCEEEE
Confidence 79999999999999999999999999999999999999996433 43333443 235555555665553 68999999
Q ss_pred ecCCceeecCCc-chHHHHH
Q 037991 367 IDVDEFFRLPSG-LILHDLI 385 (560)
Q Consensus 367 lDaDEfL~p~~~-~sI~d~L 385 (560)
+|+|||+.++.. .+|.++|
T Consensus 78 ~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 78 LDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred EeeeEEEecCCCCCCHHHhC
Confidence 999999999875 6888875
No 4
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=98.96 E-value=2e-11 Score=134.05 Aligned_cols=257 Identities=15% Similarity=0.066 Sum_probs=157.3
Q ss_pred ceEEEEEeecCCcceeeEeeeeeeeeeeeeecCCCccccCCCCCCceeEEEEEEcCC-e----eccccccccCCCCCCCC
Q 037991 201 SRFECVYGWDFRRIKFLLRSELLSIGQEVGRCETPLSVLSGPHRDDFIKVSIRLKGK-G----IFRTVAHPVRLSGPEPP 275 (560)
Q Consensus 201 ~~~~C~y~~~~~~~~~~~~~~~~s~~q~virC~~p~~i~~~~~~~~~i~VSi~~~~~-~----~iP~i~~~~~~~~~~~~ 275 (560)
..++|+|+++..++.......+.-....++.|+-... .+-++.+..+. . ++|.+.+..+ +++
T Consensus 125 ~~v~~~w~d~~~~~~~~~~~~s~~~~~~~vs~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~ 191 (472)
T KOG4735|consen 125 QFVYEQWQDFLRQEHVSKRFGATHLHLYVVSCPESYF---------ALLKEYEKLGNYVTLPPWLPLKFRNTD----EPY 191 (472)
T ss_pred hHHHhhHHhhhhheehhhhcCCeeEEEEEEEehHHHH---------HHHHHHHhcCCccccCCCcccccCCCC----CCc
Confidence 6899997777775532122323334556778885432 22233333331 1 3333333321 222
Q ss_pred CCCCceEEEEEEecchHHHHHHHHHHHhhcCc-cEEEEE-ECCCCcCHHHHHHHhccCCceEEEE-----eCCC-cchHH
Q 037991 276 AEKDHEMCICTMLRNQARFIREWVMYHARIGV-QRWFIY-DNNSNDNIESVIDSLSSEKFNITRH-----VWPW-IKTQE 347 (560)
Q Consensus 276 ~~~~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv-d~f~Iy-Dn~StD~T~eIL~~y~~~G~~Vt~~-----~wp~-~~~Q~ 347 (560)
.++...+|+-.++++|.++|..|+||++.+|+ |.++|+ -.+.+++..++++.|.+.|. ++.+ .|.. ..+|.
T Consensus 192 ~ep~~~vc~~~~~g~~~d~L~~~~E~~k~~g~~~~~di~~~~~~~~Y~~e~l~~y~~~~~-v~~~~~~~~~~~~~~~~~~ 270 (472)
T KOG4735|consen 192 HEPNLNVELRNQAGAETDCLLQYKEAAKFIGFFDLDDILIPRNANTYDEEFLREYVGSGN-IEVIFYQKREHRTVKTWEL 270 (472)
T ss_pred cCcccceEecccchhhhhHHHHHHHHHHHhccccHhheeeeccCchHHHHHHHHhhcCCC-eeEEEeeeeeeeeeecccc
Confidence 23335566667999999999999999999999 888888 66677899999999999886 4433 2332 35777
Q ss_pred HHHHHHHHHccCCCcEEEEecCCceeecCCcc--hHHHHHHhcCCCCCEeEEEE--EeeeeCCCCceecCCC-------C
Q 037991 348 AGFAHCALRARDVCNWVGFIDVDEFFRLPSGL--ILHDLIRNLSGDGSVAELRI--SCHSFGPSGLKEVPKK-------G 416 (560)
Q Consensus 348 ~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~--sI~d~L~~~~~~~~v~ai~~--~~~~fg~sg~~~~p~~-------~ 416 (560)
..++||.++++..++|++++|+||++...... ++.++++.... +.++.+.+ +|.......+...... .
T Consensus 271 ~~~~dC~~r~~~~s~~~~~~dide~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 349 (472)
T KOG4735|consen 271 LQFNDCSLRSLFSSKWSANTDIDEGKVVVRPERLNSTWIHRSINN-PKKAELLFVSSNVIIHKQLPAKFENGWLQLPEEM 349 (472)
T ss_pred cccccccHHHHhhcceecccccccceeeccccccceeeeeecccC-CccceeEeeecceeEEeeccccccCcccccceec
Confidence 89999999999999999999999998876553 44555555332 12333332 3443322222222111 1
Q ss_pred eEeceeec--cCCC-CCceEEEeCCccccceecceeeE-EeeCCeEEEeecCeeeEEEeEecc
Q 037991 417 VMVGYTCR--LATP-ERHKSIVKPEALNSTLINVVHHF-HLRDGFEYVNVNRSMLVINHYKYQ 475 (560)
Q Consensus 417 v~~~ft~r--~~~p-~~~KsIvRp~~v~~~l~~~VH~~-~~~~G~~~~~v~~~~~~I~HY~~r 475 (560)
....|... ...+ +..|+|.+++++..+ .+|.. ...+|.....+....+.+.||+..
T Consensus 350 ~~~~~~~ts~~~~~~~~~K~i~~~~~v~~~---~~h~~~~~~~~~~~~~~~~~i~~~~~yr~~ 409 (472)
T KOG4735|consen 350 EFLKYNETSQPINPSDNLKCIDRDEKVRML---TIHEISKLLPGLPKTDVYTPIVFKCYYRSF 409 (472)
T ss_pred cceeccCcccccCcccccHHHHHHHHHHHh---cchHHHHHhcCCCcccccHHHHHHHhhhhh
Confidence 11122221 1122 337999999997654 57776 344554334455667888888843
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.82 E-value=7.2e-08 Score=87.61 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=78.4
Q ss_pred EEEEEecchHHHHHHHHHHHhhc--CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCC
Q 037991 283 CICTMLRNQARFIREWVMYHARI--GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDV 360 (560)
Q Consensus 283 sVc~i~~NEa~~L~EwIe~h~~~--Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~ 360 (560)
||++.++|++++|.++|++.+.+ ...+|+|+|++|+|++.++++++.+.+..+.....+...+...+++.++..+ .
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a--~ 78 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA--K 78 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 68888999999999999988766 4689999999999999999999976444466666665546666778887775 7
Q ss_pred CcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 361 CNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
.+|++++|.|..+.+..-..+.+++++.
T Consensus 79 ~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 79 GEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred eeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 7799999999999986334555666553
No 6
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.64 E-value=4.6e-07 Score=86.92 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=73.2
Q ss_pred EEEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCC-ceEEEEeCCCcchHHHHHHHHHHHccC
Q 037991 283 CICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEK-FNITRHVWPWIKTQEAGFAHCALRARD 359 (560)
Q Consensus 283 sVc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G-~~Vt~~~wp~~~~Q~~a~ndCl~r~~~ 359 (560)
+|++.+||+++.|.++|++...+- --+++|+|++|+|+|.++++.+.+.. ..+..+.-+...+...+++.++.. .
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~--~ 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQA--A 78 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHh--C
Confidence 477789999999999999876553 24899999999999999999997653 123334334344444556666555 4
Q ss_pred CCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 360 VCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 360 ~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
+++||+++|.|..+.|. .|..+++.
T Consensus 79 ~g~~v~~ld~Dd~~~~~---~l~~~~~~ 103 (214)
T cd04196 79 DGDYVFFCDQDDIWLPD---KLERLLKA 103 (214)
T ss_pred CCCEEEEECCCcccChh---HHHHHHHH
Confidence 89999999999998764 34444444
No 7
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=3.8e-07 Score=82.79 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=74.7
Q ss_pred CceEEEEEEecchHHHHHHHHHHHhhcCc--cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHH
Q 037991 279 DHEMCICTMLRNQARFIREWVMYHARIGV--QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALR 356 (560)
Q Consensus 279 ~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r 356 (560)
.+.++|++.++|+++.|.++|++...+.. .+++|+|++|+|+|.++++.+......+.....+...++..+++.++..
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEY 81 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHh
Confidence 35799999999999999999999876653 2699999999999999999996542123333334445566667777776
Q ss_pred ccCCCcEEEEecCCceeecCCc
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSG 378 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~ 378 (560)
. ..+|++++|+|+. .+...
T Consensus 82 ~--~~~~~~~~d~d~~-~~~~~ 100 (291)
T COG0463 82 A--RGDYIVFLDADDQ-HPPEL 100 (291)
T ss_pred c--cCCEEEEEccCCC-CCHHH
Confidence 5 4499999999999 77543
No 8
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.59 E-value=3.9e-07 Score=95.91 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=78.5
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~ 357 (560)
..+||++.+||++++|.++|++...+- --+++|+|+||+|+|.+++++|.+....+....-+ ..++..+.|.++..+
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~~-n~G~~~arN~gl~~a 84 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQA-NAGVSVARNTGLAVA 84 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEECC-CCChHHHHHHHHHhC
Confidence 369999999999999999999987653 24899999999999999999997654345444323 445666778777764
Q ss_pred cCCCcEEEEecCCceeecCCcchHHHHH
Q 037991 358 RDVCNWVGFIDVDEFFRLPSGLILHDLI 385 (560)
Q Consensus 358 ~~~~dWVlflDaDEfL~p~~~~sI~d~L 385 (560)
.++||+|+|+|..+.|..-..+.+.+
T Consensus 85 --~g~yi~flD~DD~~~p~~l~~l~~~~ 110 (328)
T PRK10073 85 --TGKYVAFPDADDVVYPTMYETLMTMA 110 (328)
T ss_pred --CCCEEEEECCCCccChhHHHHHHHHH
Confidence 88999999999999874333344433
No 9
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.57 E-value=5.8e-07 Score=90.84 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhc----Cc-cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHH
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARI----GV-QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCA 354 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~----Gv-d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl 354 (560)
+.+||++.++|+++.|+++|++...+ +. -+++|+|++|+|+|.++++++.+.. .+....-+ ..+...+.|..+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~-~i~~i~~~-~~G~~~A~N~Gi 78 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEP-DNGIYDAMNKGI 78 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC-CEEEEECC-CCCHHHHHHHHH
Confidence 36899999999999999999987532 22 4899999999999999999986431 23333223 224555677777
Q ss_pred HHccCCCcEEEEecCCceeecC
Q 037991 355 LRARDVCNWVGFIDVDEFFRLP 376 (560)
Q Consensus 355 ~r~~~~~dWVlflDaDEfL~p~ 376 (560)
..+ ..+||+++|+|+++.|.
T Consensus 79 ~~a--~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 79 AMA--QGRFALFLNSGDIFHQD 98 (248)
T ss_pred HHc--CCCEEEEEeCCcccCcC
Confidence 664 78999999999999874
No 10
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.56 E-value=2.1e-06 Score=85.20 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHhhcCc----cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHH
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHARIGV----QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAH 352 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv----d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~nd 352 (560)
+....++|++.++||+..|.++|++...+-. -+++|+|++|+|+|.++++++.+.+ +....-+...+...+.|.
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--v~~i~~~~~~g~~~a~n~ 103 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKG--VKLLRFPERRGKAAALNR 103 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCc--EEEEEcCCCCChHHHHHH
Confidence 4456799999999999999999998765432 3799999999999999999996542 333322322333445667
Q ss_pred HHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEE
Q 037991 353 CALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRIS 400 (560)
Q Consensus 353 Cl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~ 400 (560)
++..+ ..|||+++|+|.++.+ +-+..+++.... +.++.+.-.
T Consensus 104 gi~~a--~~d~i~~lD~D~~~~~---~~l~~l~~~~~~-~~~~~v~~~ 145 (251)
T cd06439 104 ALALA--TGEIVVFTDANALLDP---DALRLLVRHFAD-PSVGAVSGE 145 (251)
T ss_pred HHHHc--CCCEEEEEccccCcCH---HHHHHHHHHhcC-CCccEEEeE
Confidence 76665 5699999999999974 335555555543 245554433
No 11
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.51 E-value=1.4e-06 Score=94.11 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=84.0
Q ss_pred CceEEEEEEecchHHHHHHHHHHHhhcCc--cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHH
Q 037991 279 DHEMCICTMLRNQARFIREWVMYHARIGV--QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALR 356 (560)
Q Consensus 279 ~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r 356 (560)
...++|++.++||++.|.++|++...+.. .+++|+|++|+|+|.++++++.+...++.....+...+-..+.|.++..
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~ 132 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAA 132 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999999998765542 4899999999999999999886654335544433333445567777666
Q ss_pred ccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEE
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~ 398 (560)
..+||++++|+|..+.+ +.|.++++....+++++.+.
T Consensus 133 --a~~d~i~~lDaD~~~~~---d~L~~l~~~~~~~~~v~~v~ 169 (420)
T PRK11204 133 --ARSEYLVCIDGDALLDP---DAAAYMVEHFLHNPRVGAVT 169 (420)
T ss_pred --cCCCEEEEECCCCCCCh---hHHHHHHHHHHhCCCeEEEE
Confidence 47899999999998765 34555555553345677664
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.51 E-value=1.9e-06 Score=81.32 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=68.5
Q ss_pred EEEEEecchHHHHHHHHHHHhhcCcc--EEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCC
Q 037991 283 CICTMLRNQARFIREWVMYHARIGVQ--RWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDV 360 (560)
Q Consensus 283 sVc~i~~NEa~~L~EwIe~h~~~Gvd--~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~ 360 (560)
+|++.++|+++.|.++|+....+... +++|+|++|+|++.++++++.+.. +.... ....+-..+.|.++..+ .
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~--~~~~~-~~~~g~~~a~n~~~~~a--~ 75 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWIS-EPDKGIYDAMNKGIALA--T 75 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhc--EEEEe-cCCcCHHHHHHHHHHHc--C
Confidence 46778999999999999988766554 799999999999999999986531 22221 22223344566666654 7
Q ss_pred CcEEEEecCCceeecCCcch
Q 037991 361 CNWVGFIDVDEFFRLPSGLI 380 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~s 380 (560)
++||+++|.|.++.+..-..
T Consensus 76 ~~~v~~ld~D~~~~~~~~~~ 95 (202)
T cd06433 76 GDIIGFLNSDDTLLPGALLA 95 (202)
T ss_pred CCEEEEeCCCcccCchHHHH
Confidence 89999999999998754333
No 13
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.50 E-value=1.5e-06 Score=86.54 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=78.6
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCcc----EEEEEECCCCcCHHHHHHHhccC-CceEEEEeCCCcchHHHHHHHHHH
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQ----RWFIYDNNSNDNIESVIDSLSSE-KFNITRHVWPWIKTQEAGFAHCAL 355 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd----~f~IyDn~StD~T~eIL~~y~~~-G~~Vt~~~wp~~~~Q~~a~ndCl~ 355 (560)
.++|++-++||++.|.++|++...+-.. +|+|+|++|+|+|.++++++... ...+....-....++..+.|.++.
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~ 81 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALA 81 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHH
Confidence 5899999999999999999997765332 68899999999999999998532 122333322233455667787777
Q ss_pred HccCCCcEEEEecCCceeecCCcchHHHHHHhcCC-CCCEeEEE
Q 037991 356 RARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG-DGSVAELR 398 (560)
Q Consensus 356 r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~-~~~v~ai~ 398 (560)
.+ .++||+++|+|-.+.+. .|..+++.+.. +++++.+.
T Consensus 82 ~a--~gd~i~~~DaD~~~~~~---~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 82 FA--RGEYVVIYDAEDAPDPD---QLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred hc--CCCEEEEEcCCCCCChH---HHHHHHHHHHhcCCCEEEEe
Confidence 64 78999999999998764 34444444322 13455443
No 14
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.50 E-value=9.8e-07 Score=88.08 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=74.9
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHhhc----CccEEEEEECCCCcCHHHHHHHhccC-C-ceEEEEeCCCcchHHHHH
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHARI----GVQRWFIYDNNSNDNIESVIDSLSSE-K-FNITRHVWPWIKTQEAGF 350 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~~~----Gvd~f~IyDn~StD~T~eIL~~y~~~-G-~~Vt~~~wp~~~~Q~~a~ 350 (560)
+....++|++.++||+..|.++++..... .--+|+|+|++|+|+|.++++++.+. + ..+....-+...+...++
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 34567999999999999998887754321 12389999999999999999988543 1 124444434333444567
Q ss_pred HHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 351 AHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 351 ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
+.++..+ .++|++++|+|..+.|. .|.++++..
T Consensus 86 n~g~~~a--~g~~i~~lD~D~~~~~~---~l~~l~~~~ 118 (243)
T PLN02726 86 IHGLKHA--SGDFVVIMDADLSHHPK---YLPSFIKKQ 118 (243)
T ss_pred HHHHHHc--CCCEEEEEcCCCCCCHH---HHHHHHHHH
Confidence 7776664 78999999999986553 355555443
No 15
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.47 E-value=1.6e-06 Score=94.81 Aligned_cols=114 Identities=9% Similarity=0.081 Sum_probs=80.8
Q ss_pred CceEEEEEEecchHHHHHHHHHHHhhcCc--c--EEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHH
Q 037991 279 DHEMCICTMLRNQARFIREWVMYHARIGV--Q--RWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCA 354 (560)
Q Consensus 279 ~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d--~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl 354 (560)
...++|++-++||++.|.++|+....+-. + +|+|+|++|+|+|.++++++.+....+....-+..++...+.|.++
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl 127 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAI 127 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHH
Confidence 34689999999999999999998765432 2 6999999999999999988766433333322223345556778877
Q ss_pred HHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEE
Q 037991 355 LRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAEL 397 (560)
Q Consensus 355 ~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai 397 (560)
..+ .++||+++|+|..+.+ +.+.++++.+..+++++++
T Consensus 128 ~~s--~g~~v~~~DaD~~~~~---d~L~~l~~~f~~~~~v~~v 165 (439)
T TIGR03111 128 YNS--IGKYIIHIDSDGKLHK---DAIKNMVTRFENNPDIHAM 165 (439)
T ss_pred HHc--cCCEEEEECCCCCcCh---HHHHHHHHHHHhCCCeEEE
Confidence 764 7899999999999865 3455555554433445543
No 16
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.43 E-value=3.3e-06 Score=80.74 Aligned_cols=108 Identities=7% Similarity=0.108 Sum_probs=73.8
Q ss_pred EEEEEecchH--HHHHHHHHHHhhcC--ccEEEEEECCC-CcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc
Q 037991 283 CICTMLRNQA--RFIREWVMYHARIG--VQRWFIYDNNS-NDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 283 sVc~i~~NEa--~~L~EwIe~h~~~G--vd~f~IyDn~S-tD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~ 357 (560)
+|++.++|++ .+|.++|++...+- ..+++|+|++| +|+|.++++.|.+..- +....-+...+-..+.|.++..+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~G~~~a~N~g~~~a 79 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNRGLGKALNEGLKHC 79 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCccccHHHHHHHHHHhc
Confidence 4566778876 59999999987654 36888898887 8899999999865332 44333333334455678887764
Q ss_pred cCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeE
Q 037991 358 RDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAE 396 (560)
Q Consensus 358 ~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~a 396 (560)
.++|++++|+|..+.|. .|..+++.+..++.++.
T Consensus 80 --~gd~i~~lD~Dd~~~~~---~l~~~~~~~~~~~~~~~ 113 (201)
T cd04195 80 --TYDWVARMDTDDISLPD---RFEKQLDFIEKNPEIDI 113 (201)
T ss_pred --CCCEEEEeCCccccCcH---HHHHHHHHHHhCCCeEE
Confidence 79999999999988764 34444444332233443
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.43 E-value=4.4e-06 Score=81.53 Aligned_cols=113 Identities=13% Similarity=0.191 Sum_probs=77.8
Q ss_pred eEEEEEEecchH-HHHHHHHHHHhhcCc-c---EEEEEECCCCcCHHHHHHHhccCCceEEEEeCC-CcchHHHHHHHHH
Q 037991 281 EMCICTMLRNQA-RFIREWVMYHARIGV-Q---RWFIYDNNSNDNIESVIDSLSSEKFNITRHVWP-WIKTQEAGFAHCA 354 (560)
Q Consensus 281 ~lsVc~i~~NEa-~~L~EwIe~h~~~Gv-d---~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp-~~~~Q~~a~ndCl 354 (560)
.++|++.++||+ ..|.++|++...+-. + +++|+|++|+|+|.++++.+...- .+....-+ ..+....++|.++
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-GYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-CceEEEeCCCCCCcHHHHHHHH
Confidence 488998899985 689999998876544 2 799999999999999999985421 12222112 1223334567777
Q ss_pred HHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEE
Q 037991 355 LRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRI 399 (560)
Q Consensus 355 ~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~ 399 (560)
..+ .++|++++|+|.++.|. .|..+++....++.++.+.-
T Consensus 81 ~~a--~~d~i~~lD~D~~~~~~---~l~~l~~~~~~~~~~~~v~~ 120 (234)
T cd06421 81 AHT--TGDFVAILDADHVPTPD---FLRRTLGYFLDDPKVALVQT 120 (234)
T ss_pred HhC--CCCEEEEEccccCcCcc---HHHHHHHHHhcCCCeEEEec
Confidence 654 89999999999999763 45555555544345665543
No 18
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.40 E-value=2.4e-06 Score=91.65 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=74.7
Q ss_pred CceEEEEEEecchHHHHHHHHHHHhhcCc---cEEEEEECCCCcCHHHHHHHhccCCc---eEEEEeC---C-CcchHHH
Q 037991 279 DHEMCICTMLRNQARFIREWVMYHARIGV---QRWFIYDNNSNDNIESVIDSLSSEKF---NITRHVW---P-WIKTQEA 348 (560)
Q Consensus 279 ~~~lsVc~i~~NEa~~L~EwIe~h~~~Gv---d~f~IyDn~StD~T~eIL~~y~~~G~---~Vt~~~w---p-~~~~Q~~ 348 (560)
...+||++.++||++.|.++|++...+-. -+|+|+|++|+|+|.++++++.+... ++....- | +..+...
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~ 118 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLW 118 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHH
Confidence 34699999999999999999998766532 48999999999999999998864211 2333221 1 3334444
Q ss_pred HHHHHHHHcc---CCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 349 GFAHCALRAR---DVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 349 a~ndCl~r~~---~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
+.|..+..++ ..+||++++|+|-.+.|. .|.++++..
T Consensus 119 A~n~g~~~A~~~~~~gd~llflDaD~~~~p~---~l~~lv~~~ 158 (384)
T TIGR03469 119 AVSQGIAAARTLAPPADYLLLTDADIAHGPD---NLARLVARA 158 (384)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCCCCChh---HHHHHHHHH
Confidence 5566655542 128999999999987653 355555444
No 19
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.40 E-value=2.3e-06 Score=90.30 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=78.3
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHhh----------cCccEEEEEECCCCcCHHHHHHHhccCC----ceEEEEeCCC
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHAR----------IGVQRWFIYDNNSNDNIESVIDSLSSEK----FNITRHVWPW 342 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~~----------~Gvd~f~IyDn~StD~T~eIL~~y~~~G----~~Vt~~~wp~ 342 (560)
.....++|++.++||++.|.++|+.... .+-.+|+|+|+||+|+|.++++++.+.. ..+....-+.
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 4566899999999999999998886432 1246899999999999999999986531 1233333344
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 343 IKTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 343 ~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
..++..+++..+..+ ..+||+++|+|....+..-..+.+.+.+
T Consensus 147 N~G~~~A~~~Gi~~a--~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 147 NKGKGGAVRIGMLAS--RGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred CCChHHHHHHHHHHc--cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445556666666554 7899999999998877544445555544
No 20
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.40 E-value=1.4e-06 Score=84.61 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=73.4
Q ss_pred EEEEecchHHHHHHHHHHHhhc---CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCC
Q 037991 284 ICTMLRNQARFIREWVMYHARI---GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDV 360 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~---Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~ 360 (560)
|++.++||++.|..+|+....+ ...+|+|+|++|+|+|.++++++.+....+.....+...+...+.|.++..+ .
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a--~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAA--R 78 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHc--C
Confidence 3556899999999999876643 3468999999999999999999866544444444555555566778887775 6
Q ss_pred CcEEEEecCCceeecCCcchHHHHHHh
Q 037991 361 CNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
.+||+++|.|..+.+. -|..+++.
T Consensus 79 gd~i~~lD~D~~~~~~---~l~~l~~~ 102 (224)
T cd06442 79 GDVIVVMDADLSHPPE---YIPELLEA 102 (224)
T ss_pred CCEEEEEECCCCCCHH---HHHHHHHH
Confidence 7999999999887653 24444443
No 21
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.39 E-value=4.7e-06 Score=81.61 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=81.0
Q ss_pred EEEEEEecchH-HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCC
Q 037991 282 MCICTMLRNQA-RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDV 360 (560)
Q Consensus 282 lsVc~i~~NEa-~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~ 360 (560)
++|++.++||+ +.|.++|+....+...+|+|+|++|+|++.+++.+..+... +.... ....+...+.|.++..+ .
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~-~~v~~-~~~~g~~~a~n~g~~~a--~ 77 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGG-IFVIT-VPHPGKRRALAEGIRHV--T 77 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCc-EEEEe-cCCCChHHHHHHHHHHh--C
Confidence 68888899999 99999999987766779999999999999998755443332 32222 22334556777777664 8
Q ss_pred CcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEE
Q 037991 361 CNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRI 399 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~ 399 (560)
++||+++|+|..+.+. .|..+++.+. ++.++.+.-
T Consensus 78 ~d~v~~lD~D~~~~~~---~l~~l~~~~~-~~~v~~v~~ 112 (235)
T cd06434 78 TDIVVLLDSDTVWPPN---ALPEMLKPFE-DPKVGGVGT 112 (235)
T ss_pred CCEEEEECCCceeChh---HHHHHHHhcc-CCCEeEEcC
Confidence 9999999999999864 3666666654 346776643
No 22
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=98.39 E-value=5.1e-06 Score=81.85 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=74.7
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCc----cEEEEEECCCCcCHHHHHHHhcc----CCceEEEEeCCC-cchHHHHHH
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGV----QRWFIYDNNSNDNIESVIDSLSS----EKFNITRHVWPW-IKTQEAGFA 351 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gv----d~f~IyDn~StD~T~eIL~~y~~----~G~~Vt~~~wp~-~~~Q~~a~n 351 (560)
.++|++.++||++.|.++|++...+-. -+|+|.|+ |+|+|.++++++.+ .+..+....... .+....+.|
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n 80 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALA 80 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHH
Confidence 489999999999999999998765422 26778886 99999999887642 243344333221 222223456
Q ss_pred HHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEe
Q 037991 352 HCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISC 401 (560)
Q Consensus 352 dCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~ 401 (560)
..+.. ..++||+++|+|-.+.|. .|..+..... ++.++.+.-.+
T Consensus 81 ~g~~~--a~~~~i~~~DaD~~~~~~---~l~~~~~~~~-~~~v~~v~~~~ 124 (232)
T cd06437 81 EGMKV--AKGEYVAIFDADFVPPPD---FLQKTPPYFA-DPKLGFVQTRW 124 (232)
T ss_pred HHHHh--CCCCEEEEEcCCCCCChH---HHHHhhhhhc-CCCeEEEecce
Confidence 55555 489999999999998653 3444333322 34566655433
No 23
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.38 E-value=4.6e-06 Score=91.20 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=81.3
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~ 357 (560)
..++|.+-++||+..|.++|++...+. -.+|+|+|++|+|+|.++++++.+....+....-+...+...+.|.++..
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~- 153 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAA- 153 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHh-
Confidence 468999999999999999999866543 24899999999999999999886543234333322233444566776665
Q ss_pred cCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEE
Q 037991 358 RDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRI 399 (560)
Q Consensus 358 ~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~ 399 (560)
.++||++++|+|..+.+. .+..+++....+++++++.-
T Consensus 154 -a~~d~iv~lDAD~~~~~d---~L~~lv~~~~~~~~~g~v~g 191 (444)
T PRK14583 154 -ARSEYLVCIDGDALLDKN---AVPYLVAPLIANPRTGAVTG 191 (444)
T ss_pred -CCCCEEEEECCCCCcCHH---HHHHHHHHHHhCCCeEEEEc
Confidence 489999999999987653 45555554433346776653
No 24
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.36 E-value=2.7e-06 Score=89.47 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=73.4
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhh----cC-ccEEEEEECCCCcCHHHHHHHhccC-CceEEEEeCCCcchHHHHHHHH
Q 037991 280 HEMCICTMLRNQARFIREWVMYHAR----IG-VQRWFIYDNNSNDNIESVIDSLSSE-KFNITRHVWPWIKTQEAGFAHC 353 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~----~G-vd~f~IyDn~StD~T~eIL~~y~~~-G~~Vt~~~wp~~~~Q~~a~ndC 353 (560)
..++|++-++||++.|.++++.... .+ --+|+|+|+||+|+|.++++++.+. +..+.........++..+++..
T Consensus 6 ~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G 85 (325)
T PRK10714 6 KKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAG 85 (325)
T ss_pred CeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHH
Confidence 4699999999999999998875421 12 2489999999999999999988643 4444433333333444566655
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
+.. ..+||++++|+|....|.. |.++++..
T Consensus 86 ~~~--A~gd~vv~~DaD~q~~p~~---i~~l~~~~ 115 (325)
T PRK10714 86 FSH--VTGDLIITLDADLQNPPEE---IPRLVAKA 115 (325)
T ss_pred HHh--CCCCEEEEECCCCCCCHHH---HHHHHHHH
Confidence 555 4789999999999977653 44444443
No 25
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.35 E-value=1.7e-06 Score=83.94 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=69.6
Q ss_pred EEEEecchHHHHHHHHHHHhhc------CccEEEEEECCCCcCHHHHHHHhccC-CceEEEEeCCCcchHHHHHHHHHHH
Q 037991 284 ICTMLRNQARFIREWVMYHARI------GVQRWFIYDNNSNDNIESVIDSLSSE-KFNITRHVWPWIKTQEAGFAHCALR 356 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~------Gvd~f~IyDn~StD~T~eIL~~y~~~-G~~Vt~~~wp~~~~Q~~a~ndCl~r 356 (560)
|++.++||++.|.++|+....+ ...+++|+|++|+|+|.++++++.+. +..+....-+...+...+++.++..
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~ 80 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLA 80 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHH
Confidence 3567899999999999987644 34689999999999999999998643 2212333323223344566666665
Q ss_pred ccCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
+ ..+||+++|+|..+.+.. |..+++.
T Consensus 81 a--~gd~i~~ld~D~~~~~~~---l~~l~~~ 106 (211)
T cd04188 81 A--RGDYILFADADLATPFEE---LEKLEEA 106 (211)
T ss_pred h--cCCEEEEEeCCCCCCHHH---HHHHHHH
Confidence 4 679999999999877643 4444444
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.33 E-value=1e-05 Score=73.28 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=71.9
Q ss_pred EEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCC-ceEEEEeCCCcchHHHHHHHHHHHccCCC
Q 037991 285 CTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEK-FNITRHVWPWIKTQEAGFAHCALRARDVC 361 (560)
Q Consensus 285 c~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G-~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~ 361 (560)
++.++|+++.|.++|+....+. -.+++|+|++|+|+|.++++++...+ ..+.....+...+...+.|.++.. ..+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~--~~~ 79 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRH--AKG 79 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHh--cCC
Confidence 4568999999999999987764 56899999999999999999986543 112222222222223344555444 389
Q ss_pred cEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEE
Q 037991 362 NWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAEL 397 (560)
Q Consensus 362 dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai 397 (560)
+|++++|.|..+.+. .|..++......+.++.+
T Consensus 80 ~~i~~~D~D~~~~~~---~l~~~~~~~~~~~~~~~v 112 (180)
T cd06423 80 DIVVVLDADTILEPD---ALKRLVVPFFADPKVGAV 112 (180)
T ss_pred CEEEEECCCCCcChH---HHHHHHHHhccCCCeeeE
Confidence 999999999988652 355553443333344443
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.31 E-value=4.2e-06 Score=80.29 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=69.3
Q ss_pred EEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc-cCC
Q 037991 284 ICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA-RDV 360 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~-~~~ 360 (560)
|++.++|+++.|.++|++...+- -.+++|+|++|+|+|.++++++.+.. .+.....+...+...+++.++..+ ...
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~-~i~~~~~~~n~g~~~~~n~~~~~a~~~~ 79 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD-NIVYLRLPENLGGAGGFYEGVRRAYELG 79 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC-ceEEEECccccchhhHHHHHHHHHhccC
Confidence 35678999999999999887543 25899999999999999999986432 133333333333333445554433 357
Q ss_pred CcEEEEecCCceeecCCcchHHHHH
Q 037991 361 CNWVGFIDVDEFFRLPSGLILHDLI 385 (560)
Q Consensus 361 ~dWVlflDaDEfL~p~~~~sI~d~L 385 (560)
++|++++|.|..+.+..-..+.+.+
T Consensus 80 ~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 80 YDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred CCEEEEeCCCCCcChHHHHHHHHHH
Confidence 8999999999998764333343433
No 28
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.30 E-value=2.4e-06 Score=80.25 Aligned_cols=99 Identities=14% Similarity=0.019 Sum_probs=72.7
Q ss_pred EEEEecchHHHHHHHHHHHhhc----CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccC
Q 037991 284 ICTMLRNQARFIREWVMYHARI----GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARD 359 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~----Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~ 359 (560)
|++.++|+++.|.++|++...+ ...+|+|+|++|+|++.++++.+......+.....+...+...+.+..+..+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a-- 78 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAA-- 78 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHh--
Confidence 3567899999999999988766 3689999999999999999999865443333343433334445667777775
Q ss_pred CCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 360 VCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 360 ~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
..+|++++|.|..+.|. -|..++..
T Consensus 79 ~gd~i~~lD~D~~~~~~---~l~~l~~~ 103 (185)
T cd04179 79 RGDIVVTMDADLQHPPE---DIPKLLEK 103 (185)
T ss_pred cCCEEEEEeCCCCCCHH---HHHHHHHH
Confidence 56999999999987653 35555554
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.29 E-value=4e-06 Score=81.23 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=70.8
Q ss_pred EEEEecchHHHHHHHHHHHhhcC--c--cEEEEEECCCCcCHHHHHH-HhccCCceEEEEeCC--CcchHHHHHHHHHHH
Q 037991 284 ICTMLRNQARFIREWVMYHARIG--V--QRWFIYDNNSNDNIESVID-SLSSEKFNITRHVWP--WIKTQEAGFAHCALR 356 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~G--v--d~f~IyDn~StD~T~eIL~-~y~~~G~~Vt~~~wp--~~~~Q~~a~ndCl~r 356 (560)
|++.++||+..|.++|+....+- . -+|+|+|++|+|+|.++++ .....+..+.....+ ...+...++|.++.+
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~ 80 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKA 80 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHH
Confidence 35678999999999999876542 2 4899999999999999998 322223335444433 334455577777776
Q ss_pred ccCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
+ .++||+++|+|..+.+ +.|..+++.+
T Consensus 81 ~--~~d~i~~~D~D~~~~~---~~l~~l~~~~ 107 (229)
T cd04192 81 A--KGDWIVTTDADCVVPS---NWLLTFVAFI 107 (229)
T ss_pred h--cCCEEEEECCCcccCH---HHHHHHHHHh
Confidence 4 7899999999998865 3455555543
No 30
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.28 E-value=5.7e-06 Score=81.22 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=75.0
Q ss_pred EEEEEEecchHHHHHHHHHHHhhcCc----cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc
Q 037991 282 MCICTMLRNQARFIREWVMYHARIGV----QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 282 lsVc~i~~NEa~~L~EwIe~h~~~Gv----d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~ 357 (560)
++|++.++||++.|.++|+....+.. -+++|+|++|+|+|.++++.+.+....+....-+. .....+.|.++..+
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~-~~~~~a~N~g~~~a 80 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK-RIQSAGLNIGIRNS 80 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC-CCchHHHHHHHHHh
Confidence 78888899999999999998876644 48999999999999999999965433344333332 23345677777765
Q ss_pred cCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 358 RDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 358 ~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
.++|++++|.|..+.|. .|..+++..
T Consensus 81 --~~d~v~~lD~D~~~~~~---~l~~~~~~~ 106 (249)
T cd02525 81 --RGDIIIRVDAHAVYPKD---YILELVEAL 106 (249)
T ss_pred --CCCEEEEECCCccCCHH---HHHHHHHHH
Confidence 89999999999987653 355555443
No 31
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.28 E-value=5.1e-06 Score=81.09 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=66.4
Q ss_pred EEEEecchHHHHHHHHHHHhhcCc---cEEEEEECCCCcCHHHHHHHhccC----CceEEEEe--CCCcchHHHHHHHHH
Q 037991 284 ICTMLRNQARFIREWVMYHARIGV---QRWFIYDNNSNDNIESVIDSLSSE----KFNITRHV--WPWIKTQEAGFAHCA 354 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~Gv---d~f~IyDn~StD~T~eIL~~y~~~----G~~Vt~~~--wp~~~~Q~~a~ndCl 354 (560)
|++.++|++++|.++|++...+-. -+++|+|++|+|+|.+++++|.+. ++.+.... .+...+...+.|.++
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHH
Confidence 356789999999999998865522 389999999999999999997542 22222222 122234445567776
Q ss_pred HHccCCCcEEEEecCCceeecCC
Q 037991 355 LRARDVCNWVGFIDVDEFFRLPS 377 (560)
Q Consensus 355 ~r~~~~~dWVlflDaDEfL~p~~ 377 (560)
..+ .++|++++|+|..+.+..
T Consensus 81 ~~a--~gd~i~~lD~D~~~~~~~ 101 (219)
T cd06913 81 AQS--SGRYLCFLDSDDVMMPQR 101 (219)
T ss_pred Hhc--CCCEEEEECCCccCChhH
Confidence 654 889999999999988743
No 32
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.26 E-value=6.9e-06 Score=85.76 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=70.7
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHhhc----CccEEEEEECCCCcCHHHHHHHhccCCceEEEEe-----CCCcchHHH
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHARI----GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHV-----WPWIKTQEA 348 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~~~----Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~-----wp~~~~Q~~ 348 (560)
....++|++-++||++.|.++|+....+ ..++|+|+|++|+|+|.++++++ |..+.... -+...+--.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~---~~~v~~~~~~~~~~~~n~Gkg~ 105 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAA---GARVVSREEILPELPPRPGKGE 105 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHh---cchhhcchhhhhccccCCCHHH
Confidence 3457999999999999999999977642 35799999999999999999988 43321110 011122223
Q ss_pred HHHHHHHHccCCCcEEEEecCCce-eecCCcchHHHHHHhc
Q 037991 349 GFAHCALRARDVCNWVGFIDVDEF-FRLPSGLILHDLIRNL 388 (560)
Q Consensus 349 a~ndCl~r~~~~~dWVlflDaDEf-L~p~~~~sI~d~L~~~ 388 (560)
+.+..+.. ..++||+++|+|-. +.|. .|..+++.+
T Consensus 106 A~~~g~~~--a~gd~vv~lDaD~~~~~p~---~l~~l~~~l 141 (306)
T PRK13915 106 ALWRSLAA--TTGDIVVFVDADLINFDPM---FVPGLLGPL 141 (306)
T ss_pred HHHHHHHh--cCCCEEEEEeCccccCCHH---HHHHHHHHH
Confidence 44555544 47899999999997 5543 344555443
No 33
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.25 E-value=8.7e-06 Score=77.73 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=71.1
Q ss_pred eEEEEEEecchH-HHHHHHHHHHhhcCc--cEEEEEECCCCcCH-HHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHH
Q 037991 281 EMCICTMLRNQA-RFIREWVMYHARIGV--QRWFIYDNNSNDNI-ESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALR 356 (560)
Q Consensus 281 ~lsVc~i~~NEa-~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T-~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r 356 (560)
.++|++.++||+ +.|.++|++...+-. .+++|+|++|+|++ .++++.+......+..+.-+...+-..++|.++..
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 81 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALEL 81 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHh
Confidence 489999999999 999999998765432 38999999999974 56777765443334433333322333456776666
Q ss_pred ccCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
+ .++|++++|.|..+.+. .|..+++..
T Consensus 82 a--~~d~i~~ld~D~~~~~~---~l~~~~~~~ 108 (202)
T cd04184 82 A--TGEFVALLDHDDELAPH---ALYEVVKAL 108 (202)
T ss_pred h--cCCEEEEECCCCcCChH---HHHHHHHHH
Confidence 4 78999999999988653 344444443
No 34
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=98.25 E-value=6.4e-06 Score=78.30 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=67.4
Q ss_pred EEEEecchHHHHHHHHHHHhhcCc----cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc--
Q 037991 284 ICTMLRNQARFIREWVMYHARIGV----QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA-- 357 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~Gv----d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~-- 357 (560)
|++.++||+..|.++|+....+.. -+|+|+|++|+|+|.++++.+ +..+....-+....+..+.|..+..+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---~~~~~~~~~~~~~gk~~aln~g~~~a~~ 77 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---GATVLERHDPERRGKGYALDFGFRHLLN 77 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 356689999999999998765533 468999999999999999987 33333222122223444555544433
Q ss_pred -cCCCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 358 -RDVCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 358 -~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
...++|++++|+|-.+.|. .|..+++.+
T Consensus 78 ~~~~~d~v~~~DaD~~~~p~---~l~~l~~~~ 106 (183)
T cd06438 78 LADDPDAVVVFDADNLVDPN---ALEELNARF 106 (183)
T ss_pred cCCCCCEEEEEcCCCCCChh---HHHHHHHHH
Confidence 2469999999999999764 344444443
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.23 E-value=8.5e-06 Score=83.96 Aligned_cols=102 Identities=11% Similarity=-0.076 Sum_probs=70.7
Q ss_pred EEEEEecchH-HHHHHHHHHHhhcC----ccEEEEEECCCCcCHHHHHHHh--ccCCceEEEEeCCCcchHHHHHHHHHH
Q 037991 283 CICTMLRNQA-RFIREWVMYHARIG----VQRWFIYDNNSNDNIESVIDSL--SSEKFNITRHVWPWIKTQEAGFAHCAL 355 (560)
Q Consensus 283 sVc~i~~NEa-~~L~EwIe~h~~~G----vd~f~IyDn~StD~T~eIL~~y--~~~G~~Vt~~~wp~~~~Q~~a~ndCl~ 355 (560)
||++.++||+ +.|.++|++...+- ..+|+|+||+|+|+|.+++.++ .+....|....-+...+...+.|.++.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5778899999 99999999876432 1399999999999999988652 111223554444444445556677777
Q ss_pred HccCCCcEEEEecCCceeecCCcchHHHHHH
Q 037991 356 RARDVCNWVGFIDVDEFFRLPSGLILHDLIR 386 (560)
Q Consensus 356 r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~ 386 (560)
.+ .++||+|+|.|-.+.+..-..+.+.+.
T Consensus 81 ~A--~gd~i~fLD~D~~~~~~wL~~ll~~l~ 109 (299)
T cd02510 81 AA--TGDVLVFLDSHCEVNVGWLEPLLARIA 109 (299)
T ss_pred Hc--cCCEEEEEeCCcccCccHHHHHHHHHH
Confidence 64 789999999999985432233334333
No 36
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=98.23 E-value=1.3e-05 Score=77.09 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=71.6
Q ss_pred EEEEecchHHHHHHHHHHHhhcC-ccEEEEEECCCCcCHHHHHHHhcc--CCceEEEEeCCC-cchHHHHHHHHHHHccC
Q 037991 284 ICTMLRNQARFIREWVMYHARIG-VQRWFIYDNNSNDNIESVIDSLSS--EKFNITRHVWPW-IKTQEAGFAHCALRARD 359 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~G-vd~f~IyDn~StD~T~eIL~~y~~--~G~~Vt~~~wp~-~~~Q~~a~ndCl~r~~~ 359 (560)
|++.++||++.|.++|+....+. -.+|+|+|++|+|+|.++++ +.. .+..+....++. ...-..+.|..+..+..
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~ 79 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQ 79 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhh
Confidence 35668999999999999876543 35799999999999999998 332 233233333332 22333455665554321
Q ss_pred ---------CCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEe
Q 037991 360 ---------VCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISC 401 (560)
Q Consensus 360 ---------~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~ 401 (560)
..+||+++|+|..+.|.. |..+...+. ++.++.+...+
T Consensus 80 ~~~~~g~~~~~d~v~~~DaD~~~~~~~---l~~~~~~~~-~~~v~~v~~~~ 126 (191)
T cd06436 80 ILIEEGADPERVIIAVIDADGRLDPNA---LEAVAPYFS-DPRVAGTQSRV 126 (191)
T ss_pred hccccccCCCccEEEEECCCCCcCHhH---HHHHHHhhc-CCceEEEeeeE
Confidence 358999999999987643 333332222 24566655443
No 37
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.23 E-value=1.7e-05 Score=72.39 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=70.9
Q ss_pred EEEEecchHHHHHHHHHHHhhc--CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCC
Q 037991 284 ICTMLRNQARFIREWVMYHARI--GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVC 361 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~--Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~ 361 (560)
|++.++|++..|.++|++...+ ...+++|+|++|+|++.++++++.+ +++...-+...+...+.+.|+..+ .+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~--~~ 75 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREA--KG 75 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhC--CC
Confidence 3567899999999999987655 3578999999999999999988743 244443344444555667777765 89
Q ss_pred cEEEEecCCceeecCCcchHHHHHHh
Q 037991 362 NWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 362 dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
+|++++|.|..+.+. .+..+++.
T Consensus 76 ~~i~~~D~D~~~~~~---~l~~~~~~ 98 (166)
T cd04186 76 DYVLLLNPDTVVEPG---ALLELLDA 98 (166)
T ss_pred CEEEEECCCcEECcc---HHHHHHHH
Confidence 999999999998653 34444443
No 38
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.22 E-value=1.2e-05 Score=82.98 Aligned_cols=103 Identities=13% Similarity=-0.030 Sum_probs=72.4
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhcCc--cEEEEEECCCCcCHHHHHHHhccC--CceEEEEeCCCcchHHHHHHHHHH
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARIGV--QRWFIYDNNSNDNIESVIDSLSSE--KFNITRHVWPWIKTQEAGFAHCAL 355 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T~eIL~~y~~~--G~~Vt~~~wp~~~~Q~~a~ndCl~ 355 (560)
..+||++.++|++++|.++|++...+-. -+++|+|++|+| .++++++.+. ..+|....-+...+...+.|.++.
T Consensus 5 p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~ 82 (279)
T PRK10018 5 PLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIM 82 (279)
T ss_pred CEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999998776544 489999999984 3344444321 123555544555566667788877
Q ss_pred HccCCCcEEEEecCCceeecCCcchHHHHHH
Q 037991 356 RARDVCNWVGFIDVDEFFRLPSGLILHDLIR 386 (560)
Q Consensus 356 r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~ 386 (560)
.+ .++||+++|+|..+.|..-..+.+.+.
T Consensus 83 ~a--~g~~I~~lDaDD~~~p~~l~~~~~~~~ 111 (279)
T PRK10018 83 LA--QGEYITGIDDDDEWTPNRLSVFLAHKQ 111 (279)
T ss_pred Hc--CCCEEEEECCCCCCCccHHHHHHHHHH
Confidence 64 899999999999998753233333333
No 39
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=98.21 E-value=1.3e-05 Score=77.19 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=73.1
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCC--ceEEEE--eCC-CcchHHHHHHHH
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEK--FNITRH--VWP-WIKTQEAGFAHC 353 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G--~~Vt~~--~wp-~~~~Q~~a~ndC 353 (560)
.++|++-++||+..|.++|+....+- --+|+|+|++|+|+|.++++++.+.- ..+... .-+ +......+++..
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g 81 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKG 81 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHH
Confidence 37899999999999999999876542 25899999999999999999885431 123222 111 222233344544
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEE
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAEL 397 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai 397 (560)
+.. ..++|++++|+|..+.|. .|..+++.... +.++.+
T Consensus 82 ~~~--a~~d~i~~~D~D~~~~~~---~l~~l~~~~~~-~~~~~v 119 (196)
T cd02520 82 YEE--ARYDILVISDSDISVPPD---YLRRMVAPLMD-PGVGLV 119 (196)
T ss_pred HHh--CCCCEEEEECCCceEChh---HHHHHHHHhhC-CCCCeE
Confidence 444 479999999999887543 35555554322 244443
No 40
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=98.17 E-value=2.1e-05 Score=77.31 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=74.3
Q ss_pred EEEEEecchH-HHHHHHHHHHhhcC--ccEEEEEECCCCcCHH-HHHHHhccC-CceEEEEeC-CCcchHHHHHHHHHHH
Q 037991 283 CICTMLRNQA-RFIREWVMYHARIG--VQRWFIYDNNSNDNIE-SVIDSLSSE-KFNITRHVW-PWIKTQEAGFAHCALR 356 (560)
Q Consensus 283 sVc~i~~NEa-~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~-eIL~~y~~~-G~~Vt~~~w-p~~~~Q~~a~ndCl~r 356 (560)
||++-++||+ ..|.++|++...+. ..+|+|+|++|+|++. ++++++.+. +.++....- +..+.+..+.|.++..
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 4677889997 79999999887664 3589999999999985 444444321 323322221 1123344567877777
Q ss_pred ccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEE
Q 037991 357 ARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 357 ~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~ 398 (560)
+...+||++++|+|..+.| +.|.+++..... +.++.+.
T Consensus 81 a~~~~d~i~~lD~D~~~~~---~~l~~l~~~~~~-~~~~~v~ 118 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEP---DWLKRLVPIFDD-PRVGFVQ 118 (236)
T ss_pred cCCCCCEEEEEcCCCCcCH---HHHHHHHHHhcC-CCeeEEe
Confidence 6555899999999987765 346666665543 4566654
No 41
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.08 E-value=1.5e-05 Score=75.25 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=65.9
Q ss_pred EEEEecchHHHHHHHHHHHhhc-----CccEEEEEECCCCcCHHHHHHHhccCCceEEEEe-CCCcchHHHHHHHHHHHc
Q 037991 284 ICTMLRNQARFIREWVMYHARI-----GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHV-WPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~-----Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~-wp~~~~Q~~a~ndCl~r~ 357 (560)
|++.++||++.|.++|+....+ ...+|+|+|++|+|+|.++++.+.+...++.... ....+ ...+++..+..+
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G-~~~a~n~g~~~a 79 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFG-QQAALLAGLDHA 79 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCC-cHHHHHHHHHhc
Confidence 3567899999998887765422 2348999999999999999999865443343332 22222 233455555553
Q ss_pred cCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 358 RDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 358 ~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
..+|++++|+|..+.+. .+..+++.
T Consensus 80 --~~d~i~~~D~D~~~~~~---~l~~l~~~ 104 (181)
T cd04187 80 --RGDAVITMDADLQDPPE---LIPEMLAK 104 (181)
T ss_pred --CCCEEEEEeCCCCCCHH---HHHHHHHH
Confidence 67999999999997653 34444444
No 42
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.02 E-value=3.5e-05 Score=75.53 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=62.7
Q ss_pred EEEecchH-HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccC-CCc
Q 037991 285 CTMLRNQA-RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARD-VCN 362 (560)
Q Consensus 285 c~i~~NEa-~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~-~~d 362 (560)
++.++||+ +.|.++|++...+ ..+|+|+||+|+|.+.++++. .+.+ +....-+...+-..++|.++..+.. .++
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~~~~--i~~i~~~~n~G~~~a~N~g~~~a~~~~~d 77 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-NSEK--IELIHLGENLGIAKALNIGIKAALENGAD 77 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-cCCc--EEEEECCCceehHHhhhHHHHHHHhCCCC
Confidence 35689999 9999999998776 689999999999888776654 2223 3333333323334456677666533 679
Q ss_pred EEEEecCCceeecC
Q 037991 363 WVGFIDVDEFFRLP 376 (560)
Q Consensus 363 WVlflDaDEfL~p~ 376 (560)
|++++|+|..+.|.
T Consensus 78 ~v~~lD~D~~~~~~ 91 (237)
T cd02526 78 YVLLFDQDSVPPPD 91 (237)
T ss_pred EEEEECCCCCcCHh
Confidence 99999999998653
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.99 E-value=4.2e-05 Score=71.70 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=67.7
Q ss_pred EEEEecchHHHHHHHHHHHhhc--CccEEEEEECCCCcCHHHHHHHhccC-CceEEEEeCCCcc-hHHHHHHHHHHHccC
Q 037991 284 ICTMLRNQARFIREWVMYHARI--GVQRWFIYDNNSNDNIESVIDSLSSE-KFNITRHVWPWIK-TQEAGFAHCALRARD 359 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~--Gvd~f~IyDn~StD~T~eIL~~y~~~-G~~Vt~~~wp~~~-~Q~~a~ndCl~r~~~ 359 (560)
|++.++|++..|.++|+....+ .-.+++|+|++|+|+|.++++.+.+. +..+....-+..+ .-..+.|.++..+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a-- 78 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA-- 78 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--
Confidence 3566799999999999987653 24689999999999999999988542 2222222112111 2223456666654
Q ss_pred CCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 360 VCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 360 ~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
.++|++++|+|..+.+. -|..+++..
T Consensus 79 ~g~~i~~lD~D~~~~~~---~l~~~~~~~ 104 (182)
T cd06420 79 KGDYLIFIDGDCIPHPD---FIADHIELA 104 (182)
T ss_pred cCCEEEEEcCCcccCHH---HHHHHHHHh
Confidence 78999999999987542 355555554
No 44
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.93 E-value=0.00012 Score=78.22 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=74.7
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhcCc--cEEEEEECCCCcCHHHHHHHhccCC--ceEEEEeC--CCcchHHH-HHHH
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARIGV--QRWFIYDNNSNDNIESVIDSLSSEK--FNITRHVW--PWIKTQEA-GFAH 352 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T~eIL~~y~~~G--~~Vt~~~w--p~~~~Q~~-a~nd 352 (560)
..+||++-++||++.|.++|++...+-- -+|+|.|++|+|.|.++++++.+.. .+|....- +.....+. +.+.
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~ 120 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLIN 120 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHH
Confidence 4589999999999999999999876643 5889999999999999998886532 22322221 11111221 2222
Q ss_pred HHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEE
Q 037991 353 CALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 353 Cl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~ 398 (560)
.+.. .++||++++|+|-.+.| +-|..+++...+ ++++.+.
T Consensus 121 ~~~~--a~ge~i~~~DaD~~~~p---~~L~~lv~~~~~-~~v~~V~ 160 (373)
T TIGR03472 121 MLPH--ARHDILVIADSDISVGP---DYLRQVVAPLAD-PDVGLVT 160 (373)
T ss_pred HHHh--ccCCEEEEECCCCCcCh---hHHHHHHHHhcC-CCcceEe
Confidence 2223 58999999999987754 335566555543 3555543
No 45
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.83 E-value=5.8e-05 Score=73.65 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=65.3
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhc--CccEEEEEECCCCcCHHHHHHHhcc----CCceEEEEeC-CCcchHHHHHHHH
Q 037991 281 EMCICTMLRNQARFIREWVMYHARI--GVQRWFIYDNNSNDNIESVIDSLSS----EKFNITRHVW-PWIKTQEAGFAHC 353 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~--Gvd~f~IyDn~StD~T~eIL~~y~~----~G~~Vt~~~w-p~~~~Q~~a~ndC 353 (560)
.|+|++.++||...|.++|++...+ .--+++|+|++++|++.++++++.+ .++.+....- ++...-..+.|.+
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~ 81 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEA 81 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHH
Confidence 4889989999999999999987643 2467899999999998777765432 2322222221 1111223456777
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEe
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISC 401 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~ 401 (560)
+... .++|++++|.|.++.|. .|..+++.+ ..+.++.+....
T Consensus 82 ~~~~--~~d~i~~lD~D~~~~p~---~l~~~~~~~-~~~~~~~v~~~~ 123 (228)
T PF13641_consen 82 LAAA--RGDYILFLDDDTVLDPD---WLERLLAAF-ADPGVGAVGGPV 123 (228)
T ss_dssp HHH-----SEEEEE-SSEEE-CH---HHHHHHHHH-HBSS--EEEEEE
T ss_pred HHhc--CCCEEEEECCCcEECHH---HHHHHHHHH-HhCCCCeEeeeE
Confidence 7764 69999999999998553 455555555 223567766443
No 46
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.80 E-value=0.00018 Score=84.34 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=78.1
Q ss_pred ceEEEEEEecchHH-HHHHHHHHHhhcCc--c--EEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCc-chHHHHHHHH
Q 037991 280 HEMCICTMLRNQAR-FIREWVMYHARIGV--Q--RWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWI-KTQEAGFAHC 353 (560)
Q Consensus 280 ~~lsVc~i~~NEa~-~L~EwIe~h~~~Gv--d--~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~-~~Q~~a~ndC 353 (560)
..++|++-+|||+. .+.+.|.....+-- + +|+|.|++|+|++.++++++ |..+ ..-+.. +.-..+.|++
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~---~v~y--I~R~~n~~gKAGnLN~a 334 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV---GVKY--IARPTHEHAKAGNINNA 334 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC---CcEE--EEeCCCCcchHHHHHHH
Confidence 37899989999985 45678775432211 2 79999999999999999987 5432 222322 2223467888
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEeeeeC
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISCHSFG 405 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~~~fg 405 (560)
+..+ ++|||+++|+|-.+.+ +.+...+.....+++++.+..+..+++
T Consensus 335 L~~a--~GEyIavlDAD~ip~p---dfL~~~V~~f~~dP~VglVQtp~~f~n 381 (852)
T PRK11498 335 LKYA--KGEFVAIFDCDHVPTR---SFLQMTMGWFLKDKKLAMMQTPHHFFS 381 (852)
T ss_pred HHhC--CCCEEEEECCCCCCCh---HHHHHHHHHHHhCCCeEEEEcceeccC
Confidence 7764 8899999999998643 345555544333457888776554443
No 47
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.71 E-value=0.00069 Score=59.67 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=65.4
Q ss_pred EEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCC
Q 037991 284 ICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVC 361 (560)
Q Consensus 284 Vc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~ 361 (560)
+++.++|+...|.+.++....++ ..+++|+|++++|.+.+.++++.+....+....-+.......+.+.++... ..
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~ 78 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA--RG 78 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh--cC
Confidence 35678999999999999988776 789999999999999999988865311122222222223333445554443 79
Q ss_pred cEEEEecCCceeecC
Q 037991 362 NWVGFIDVDEFFRLP 376 (560)
Q Consensus 362 dWVlflDaDEfL~p~ 376 (560)
+|++++|.|..+.+.
T Consensus 79 d~v~~~d~D~~~~~~ 93 (156)
T cd00761 79 EYILFLDADDLLLPD 93 (156)
T ss_pred CEEEEECCCCccCcc
Confidence 999999999998764
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.67 E-value=0.00018 Score=69.61 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=66.6
Q ss_pred EEEEEEecchHHHHHHHHHHHhhcC--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccC
Q 037991 282 MCICTMLRNQARFIREWVMYHARIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARD 359 (560)
Q Consensus 282 lsVc~i~~NEa~~L~EwIe~h~~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~ 359 (560)
++|++.++|+++.|.++|+....+= -.+++|+|++|+|++.+++++. +..+ ...-++. -.+.|.++..+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~---~~~~-~~~~~g~---~~a~n~g~~~a-- 71 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA---GVVV-ISSPKGR---ARQMNAGAAAA-- 71 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcC---CeEE-EeCCcCH---HHHHHHHHHhc--
Confidence 4788889999999999999876542 3689999999999999998873 4322 2222332 23445555554
Q ss_pred CCcEEEEecCCceeecCCcchHHHHHHhc
Q 037991 360 VCNWVGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 360 ~~dWVlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
.++||+++|.|..+.+ ..+..++...
T Consensus 72 ~~~~i~~~D~D~~~~~---~~l~~l~~~~ 97 (221)
T cd02522 72 RGDWLLFLHADTRLPP---DWDAAIIETL 97 (221)
T ss_pred cCCEEEEEcCCCCCCh---hHHHHHHHHh
Confidence 5899999999998864 2355544444
No 49
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=97.57 E-value=0.00052 Score=79.66 Aligned_cols=119 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred ceEEEEEEecchHHHH-HHHHHHHhhcCc----cEEEEEECCCCcCH--------------HHHHHHhcc-CCceEEEEe
Q 037991 280 HEMCICTMLRNQARFI-REWVMYHARIGV----QRWFIYDNNSNDNI--------------ESVIDSLSS-EKFNITRHV 339 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L-~EwIe~h~~~Gv----d~f~IyDn~StD~T--------------~eIL~~y~~-~G~~Vt~~~ 339 (560)
..++|++-+|||+..+ .+.++....+-- -+|+|+|++|||+| .+.++++.+ .|. .+..
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v--~yi~ 208 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGV--NYIT 208 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCc--EEEE
Confidence 4799999999998755 568887544322 27999999999987 233334332 243 2222
Q ss_pred CCCc-chHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEeeeeC
Q 037991 340 WPWI-KTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISCHSFG 405 (560)
Q Consensus 340 wp~~-~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~~~fg 405 (560)
-+.. +.-..+.|+++.++ ++|||+++|+|-++.+ +.|.+.+..+..+++++.+..+..+++
T Consensus 209 r~~n~~~KAgnLN~al~~a--~gd~Il~lDAD~v~~p---d~L~~~v~~f~~dp~v~~Vqtp~~f~~ 270 (713)
T TIGR03030 209 RPRNVHAKAGNINNALKHT--DGELILIFDADHVPTR---DFLQRTVGWFVEDPKLFLVQTPHFFVS 270 (713)
T ss_pred CCCCCCCChHHHHHHHHhc--CCCEEEEECCCCCcCh---hHHHHHHHHHHhCCCEEEEeCCeeccC
Confidence 2222 22233578887764 7899999999999764 346666655543456777665444443
No 50
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.41 E-value=0.0007 Score=68.94 Aligned_cols=93 Identities=14% Similarity=-0.008 Sum_probs=60.9
Q ss_pred ecch-HHHHHHHHHHHhhcCccEEEEEECCCCcC--HHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc-cCCCcE
Q 037991 288 LRNQ-ARFIREWVMYHARIGVQRWFIYDNNSNDN--IESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA-RDVCNW 363 (560)
Q Consensus 288 ~~NE-a~~L~EwIe~h~~~Gvd~f~IyDn~StD~--T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~-~~~~dW 363 (560)
+||. ...|.++|+....+ .++|+|+||+|+|. +.++++.+ ..|+...-+...+...++|..+..+ ...+||
T Consensus 2 tyn~~~~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~~----~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~ 76 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLRG----QKIALIHLGDNQGIAGAQNQGLDASFRRGVQG 76 (281)
T ss_pred ccCccHHHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhccC----CCeEEEECCCCcchHHHHHHHHHHHHHCCCCE
Confidence 6884 68999999987654 78999999998754 34444333 2355554444444445566555443 247899
Q ss_pred EEEecCCceeecCCcchHHHHHHhc
Q 037991 364 VGFIDVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 364 VlflDaDEfL~p~~~~sI~d~L~~~ 388 (560)
|+++|.|..+.+. .|..+++..
T Consensus 77 i~~lD~D~~~~~~---~l~~l~~~~ 98 (281)
T TIGR01556 77 VLLLDQDSRPGNA---FLAAQWKLL 98 (281)
T ss_pred EEEECCCCCCCHH---HHHHHHHHH
Confidence 9999999998753 344444433
No 51
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.18 E-value=0.0041 Score=71.83 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=80.1
Q ss_pred CCceEEEEEEecchHH-----HHHHHHHHHhhcCc---cEEEEEECCCCcCHHH--------HHHHhccCCceEEEEeCC
Q 037991 278 KDHEMCICTMLRNQAR-----FIREWVMYHARIGV---QRWFIYDNNSNDNIES--------VIDSLSSEKFNITRHVWP 341 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~-----~L~EwIe~h~~~Gv---d~f~IyDn~StD~T~e--------IL~~y~~~G~~Vt~~~wp 341 (560)
....++|++-++||+. .|++++++...++- =+|+|.|++++|++.. +.++|.. +.+|.+..-+
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~-~~~i~yr~R~ 200 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGG-EGRIFYRRRR 200 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCcEEEEECC
Confidence 4457888888999984 57888876554443 2689999999988753 3444432 2235444333
Q ss_pred CcchHHH-HHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEeee
Q 037991 342 WIKTQEA-GFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISCHS 403 (560)
Q Consensus 342 ~~~~Q~~-a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~~~ 403 (560)
....-++ +.++.+.+....+|||+.+|+|-.+.+ +.|..++...+.+|.+|.+..+...
T Consensus 201 ~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~---d~L~~lv~~m~~dP~vGlVQt~~~~ 260 (691)
T PRK05454 201 RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSG---DTLVRLVRLMEANPRAGLIQTLPVA 260 (691)
T ss_pred cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCH---HHHHHHHHHHhhCcCEEEEeCCccC
Confidence 2222233 566666666678899999999999875 4566666665545678888754433
No 52
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.14 E-value=0.0047 Score=64.16 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=73.2
Q ss_pred ceEEEEEEecchHHHHHHHHHHHhhcCc--cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc
Q 037991 280 HEMCICTMLRNQARFIREWVMYHARIGV--QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA 357 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~~~Gv--d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~ 357 (560)
+.+++++.++|..+.+.+||+....+.. ++++++||+|+|++.+.++... .+ +|....-+...+=..++|..+..+
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~~-~v~~i~~~~NlG~agg~n~g~~~a 80 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-FP-NVRLIENGENLGFAGGFNRGIKYA 80 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-CC-cEEEEEcCCCccchhhhhHHHHHH
Confidence 4689999999999999999998887664 4455679999999999998862 12 244443332222222334344443
Q ss_pred cCC-CcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEE
Q 037991 358 RDV-CNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 358 ~~~-~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~ 398 (560)
... .+|+++++-|.++.+ +.|.++++..+..+.++.+.
T Consensus 81 ~~~~~~~~l~LN~D~~~~~---~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 81 LAKGDDYVLLLNPDTVVEP---DLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred hcCCCcEEEEEcCCeeeCh---hHHHHHHHHHHhCCCCeEee
Confidence 233 339999999944443 45666666655544444443
No 53
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.0047 Score=66.51 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=77.6
Q ss_pred ceEEEEEEecchHH-HHHHHHHHHhhcCcc--EEEEEECCCCcCHHHHHHHhccCC-ceEEEEeCC--CcchHHHHHHHH
Q 037991 280 HEMCICTMLRNQAR-FIREWVMYHARIGVQ--RWFIYDNNSNDNIESVIDSLSSEK-FNITRHVWP--WIKTQEAGFAHC 353 (560)
Q Consensus 280 ~~lsVc~i~~NEa~-~L~EwIe~h~~~Gvd--~f~IyDn~StD~T~eIL~~y~~~G-~~Vt~~~wp--~~~~Q~~a~ndC 353 (560)
..+++.+-++||+. .+++++++...+... +++++|++++|++.++++++.+.- .++... .+ ..+.-..+.+..
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~gK~~al~~~ 132 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVI-YPEKKNGGKAGALNNG 132 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEE-eccccCccchHHHHHH
Confidence 67889888999998 999999988765443 899999999999999999996542 122222 22 112223456677
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCC
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGD 391 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~ 391 (560)
+..+ .+|+|+++|+|-.+.+ +.|.+++....+.
T Consensus 133 l~~~--~~d~V~~~DaD~~~~~---d~l~~~~~~f~~~ 165 (439)
T COG1215 133 LKRA--KGDVVVILDADTVPEP---DALRELVSPFEDP 165 (439)
T ss_pred Hhhc--CCCEEEEEcCCCCCCh---hHHHHHHhhhcCC
Confidence 6665 5999999999999875 3577777766553
No 54
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=97.07 E-value=0.0043 Score=69.26 Aligned_cols=99 Identities=8% Similarity=0.003 Sum_probs=67.3
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHh-hcC--ccEEEEEECCCCcCHHHHHHHhccCCceEE--EEeCCCcchHHHHHHH
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHA-RIG--VQRWFIYDNNSNDNIESVIDSLSSEKFNIT--RHVWPWIKTQEAGFAH 352 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~-~~G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt--~~~wp~~~~Q~~a~nd 352 (560)
+...++|.+-.+||++.|.++|++.. .+- --+|+|.|.+|+|+|.++++++.+....+. ..+-++...-..++|.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~ 143 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNW 143 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHH
Confidence 34578999999999999999999752 221 237999999999999999998765443332 2222232222335555
Q ss_pred HHHHc-------cCCCcEEEEecCCceeecC
Q 037991 353 CALRA-------RDVCNWVGFIDVDEFFRLP 376 (560)
Q Consensus 353 Cl~r~-------~~~~dWVlflDaDEfL~p~ 376 (560)
.+... ...+|+++++|+|..+.|.
T Consensus 144 ~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd 174 (504)
T PRK14716 144 IYQAIFAFERERGIRFAIIVLHDAEDVIHPL 174 (504)
T ss_pred HHHHHHHhhhhcCCCcCEEEEEcCCCCcCcc
Confidence 44321 1245999999999998874
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=96.81 E-value=0.014 Score=59.55 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=72.6
Q ss_pred EEEEEEecchHHH-HHHHHHHHhh----cC---ccEEEEEECCCCcCHHH--------HHHHhccCCceEEEEeCCCcch
Q 037991 282 MCICTMLRNQARF-IREWVMYHAR----IG---VQRWFIYDNNSNDNIES--------VIDSLSSEKFNITRHVWPWIKT 345 (560)
Q Consensus 282 lsVc~i~~NEa~~-L~EwIe~h~~----~G---vd~f~IyDn~StD~T~e--------IL~~y~~~G~~Vt~~~wp~~~~ 345 (560)
+||.+-++||+.. |.+.|+.... ++ -=+|+|.|+++++.... +.+++.+ +..|.+..-+...+
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~g 79 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENTG 79 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCCC
Confidence 3677778999876 7777765331 22 34788888877654321 3344543 44454443332222
Q ss_pred HH-HHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEeeeeCC
Q 037991 346 QE-AGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISCHSFGP 406 (560)
Q Consensus 346 Q~-~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~~~fg~ 406 (560)
-+ .+++..+......+++|+++|+|-.+.|. .|..++..+..+|.++.+..+..+++.
T Consensus 80 ~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~---~l~~~v~~~~~~~~vg~vq~~~~~~n~ 138 (254)
T cd04191 80 RKAGNIADFCRRWGSRYDYMVVLDADSLMSGD---TIVRLVRRMEANPRAGIIQTAPKLIGA 138 (254)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHH---HHHHHHHHHHhCCCEEEEeCCceeECC
Confidence 22 24455544333578999999999998763 456666555434678888766555543
No 56
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=96.78 E-value=0.0069 Score=60.69 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=62.3
Q ss_pred EEEEecchH-HHHHHHHHHHhhcCcc------------EEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHH--
Q 037991 284 ICTMLRNQA-RFIREWVMYHARIGVQ------------RWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEA-- 348 (560)
Q Consensus 284 Vc~i~~NEa-~~L~EwIe~h~~~Gvd------------~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~-- 348 (560)
|++-++||+ +.|.+.|++...+-.. +|+|+|+||+| .+.|. ...|..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------~~~gk---------~~~~~~~~ 62 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------KNRGK---------RDSQLWFF 62 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------ccCcc---------hHHHHHHH
Confidence 456689996 8999999987766665 78999999999 11231 112222
Q ss_pred -HHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEe
Q 037991 349 -GFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISC 401 (560)
Q Consensus 349 -a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~ 401 (560)
.++..+. ....+||+++|+|-.+.+. .|..+++.+..+|.++++.-..
T Consensus 63 ~~~~~~~~--~a~~e~i~~~DaD~~~~~~---~l~~l~~~~~~~p~vg~v~g~~ 111 (244)
T cd04190 63 NYFCRVLF--PDDPEFILLVDADTKFDPD---SIVQLYKAMDKDPEIGGVCGEI 111 (244)
T ss_pred HHHHHHhh--cCCCCEEEEECCCCcCCHh---HHHHHHHHHHhCCCEEEEEeee
Confidence 2222222 3589999999999999753 4555555543345677765443
No 57
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.57 E-value=0.0067 Score=62.96 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=69.6
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCC---------cchHH
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPW---------IKTQE 347 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~---------~~~Q~ 347 (560)
+.+...++.+-++||+..|.++|++..- .+|+.+|.-|.|+|+|.||+.+|.+.-..-....+|. ...+.
T Consensus 84 ~~pl~~~~~iRvKnE~~tl~~si~S~Lp-ai~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l 162 (347)
T PF06306_consen 84 KSPLNPWAFIRVKNEAMTLAESIESILP-AIDEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSL 162 (347)
T ss_pred CCCCCcceEEEEcchhhhHHHHHHHHHH-HHhccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhh
Confidence 4567788999999999999999999853 4799999999999999999999976432211112221 11222
Q ss_pred HHHHHHHHHccCCCcEEEEecCCceeecC
Q 037991 348 AGFAHCALRARDVCNWVGFIDVDEFFRLP 376 (560)
Q Consensus 348 ~a~ndCl~r~~~~~dWVlflDaDEfL~p~ 376 (560)
..|-+..+......+|++=+|+|-+..++
T Consensus 163 ~~YYNy~ls~ipk~~w~iKID~DhIy~~~ 191 (347)
T PF06306_consen 163 YNYYNYVLSFIPKNEWAIKIDADHIYDTK 191 (347)
T ss_pred hhhhhhhhcccccceEEEEeccceeecHH
Confidence 22222222223578999999999998764
No 58
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=96.47 E-value=0.023 Score=62.77 Aligned_cols=207 Identities=14% Similarity=0.266 Sum_probs=131.7
Q ss_pred CCCEEEEEEeeecccccccCCceEEEEEeecCCcceeeEeeeeeee-eeeeeecCCCccccCCCCCCceeEEEEEEcCCe
Q 037991 180 DNTTLVFIKGLNLRRDRAYNPSRFECVYGWDFRRIKFLLRSELLSI-GQEVGRCETPLSVLSGPHRDDFIKVSIRLKGKG 258 (560)
Q Consensus 180 ~~~~vv~v~g~n~r~~~~~~~~~~~C~y~~~~~~~~~~~~~~~~s~-~q~virC~~p~~i~~~~~~~~~i~VSi~~~~~~ 258 (560)
+.++++++..+|.+.....++ ...-. +.+.+... + ..+.+. ....+.|.+-+.++......+.-++.++..+..
T Consensus 28 g~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~t~~~-~--~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~s~~~~ 102 (472)
T KOG4735|consen 28 GENAVALVMTMNLRTVPNLKN-EINLI-GSNSTSST-V--TDAPSTTHEPSDSCSYVTIFAQANLLPNLKKLELESEGNL 102 (472)
T ss_pred Ccceeeeeeecccccccccce-eEEEE-EecccceE-E--eccccceecccchhhhhHHHHhhhccCccceEEEeecCCc
Confidence 458999999999988766666 22222 34443221 1 111122 234678998888876555445567788887654
Q ss_pred -eccccc-cccCCCCCCCCCCCCceEEEEEEecchH--HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCC-c
Q 037991 259 -IFRTVA-HPVRLSGPEPPAEKDHEMCICTMLRNQA--RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEK-F 333 (560)
Q Consensus 259 -~iP~i~-~~~~~~~~~~~~~~~~~lsVc~i~~NEa--~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G-~ 333 (560)
++|... .+. +.....+|+....-.|. .++..-+.+. ..|..++.+|.-.+...+.+++..|.+.| .
T Consensus 103 ~~i~~~~a~~~--------~~~~vv~~~sp~~v~~~w~d~~~~~~~~~-~~~s~~~~~~~vs~~~~~~~~~~~~~~~~~~ 173 (472)
T KOG4735|consen 103 TEIPFKSARYS--------APKPVVVCISPQFVYEQWQDFLRQEHVSK-RFGATHLHLYVVSCPESYFALLKEYEKLGNY 173 (472)
T ss_pred eEeeecccccC--------CCCcEEEEecchHHHhhHHhhhhheehhh-hcCCeeEEEEEEEehHHHHHHHHHHHhcCCc
Confidence 555333 221 12233333333222232 2222222222 35777999999988999999999999988 3
Q ss_pred eEEEEeCCC------------------cchHHHHHHHHHHHccCCCcEEEEecCCceeecCCcch-HHHHHHhcCCCCCE
Q 037991 334 NITRHVWPW------------------IKTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLI-LHDLIRNLSGDGSV 394 (560)
Q Consensus 334 ~Vt~~~wp~------------------~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~s-I~d~L~~~~~~~~v 394 (560)
++..+|.- .++|..+..+|++++++.++++++.|.|.+++|....+ -.+++..+...+.+
T Consensus 174 -~~~~~~~~~~~~~~~~p~~ep~~~vc~~~~~g~~~d~L~~~~E~~k~~g~~~~~di~~~~~~~~Y~~e~l~~y~~~~~v 252 (472)
T KOG4735|consen 174 -VTLPPWLPLKFRNTDEPYHEPNLNVELRNQAGAETDCLLQYKEAAKFIGFFDLDDILIPRNANTYDEEFLREYVGSGNI 252 (472)
T ss_pred -cccCCCcccccCCCCCCccCcccceEecccchhhhhHHHHHHHHHHHhccccHhheeeeccCchHHHHHHHHhhcCCCe
Confidence 33344511 25788889999999999999999999999999887766 45677777665566
Q ss_pred eEEEEEe
Q 037991 395 AELRISC 401 (560)
Q Consensus 395 ~ai~~~~ 401 (560)
..+.+..
T Consensus 253 ~~~~~~~ 259 (472)
T KOG4735|consen 253 EVIFYQK 259 (472)
T ss_pred eEEEeee
Confidence 6666543
No 59
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=96.24 E-value=0.021 Score=55.36 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred eEEEEEEecchHHHHH--HHHH--HHhhcCc-cEEEEEECCCCcCHHHHHHHhccC--CceEEEEeCCCcchHHHHHHHH
Q 037991 281 EMCICTMLRNQARFIR--EWVM--YHARIGV-QRWFIYDNNSNDNIESVIDSLSSE--KFNITRHVWPWIKTQEAGFAHC 353 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~--EwIe--~h~~~Gv-d~f~IyDn~StD~T~eIL~~y~~~--G~~Vt~~~wp~~~~Q~~a~ndC 353 (560)
+-+|..-+|||-.+|. -|+- +....|. -+++|+|++|-|+|.++++.+++. +.+|-..+...--.--.|+-+.
T Consensus 4 kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hg 83 (238)
T KOG2978|consen 4 KYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHG 83 (238)
T ss_pred ceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhh
Confidence 4577778899987663 2322 3333465 579999999999999999996632 3345444443322333355666
Q ss_pred HHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCC
Q 037991 354 ALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG 390 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~ 390 (560)
+.. ++.+++..+|+|=-=.| ..|.++++...+
T Consensus 84 l~~--a~g~fiviMDaDlsHhP---k~ipe~i~lq~~ 115 (238)
T KOG2978|consen 84 LKH--ATGDFIVIMDADLSHHP---KFIPEFIRLQKE 115 (238)
T ss_pred hhh--ccCCeEEEEeCccCCCc---hhHHHHHHHhhc
Confidence 665 49999999999954333 468888887654
No 60
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=96.04 E-value=0.033 Score=57.14 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=67.6
Q ss_pred CCceEEEEEEecchHH----HHHHHHHHHh--hcC----ccEEEEEECCCCcCHHHHHHHhc-cCCce-EEEEe---CCC
Q 037991 278 KDHEMCICTMLRNQAR----FIREWVMYHA--RIG----VQRWFIYDNNSNDNIESVIDSLS-SEKFN-ITRHV---WPW 342 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~----~L~EwIe~h~--~~G----vd~f~IyDn~StD~T~eIL~~y~-~~G~~-Vt~~~---wp~ 342 (560)
.++.++|++-.|||+. .|.|++.|.. ... -.+++|+|+||+|+|.+++-+|. +.|.. +.+.. -.+
T Consensus 65 ~~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrg 144 (323)
T KOG2977|consen 65 EKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRG 144 (323)
T ss_pred hhceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCC
Confidence 4569999999999985 4577787754 233 47899999999999999998887 55632 32222 112
Q ss_pred -cchHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 343 -IKTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 343 -~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
.+.-+.. ++. ...+.++|.|+|----...-..|...|..
T Consensus 145 KGgAvR~g----~l~--~rG~~ilfadAdGaTkf~d~ekLe~al~~ 184 (323)
T KOG2977|consen 145 KGGAVRKG----MLS--SRGQKILFADADGATKFADLEKLEKALND 184 (323)
T ss_pred CCcceehh----hHh--ccCceEEEEcCCCCccCCCHHHHHHHHHh
Confidence 1222222 233 38899999999975433333345555543
No 61
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=95.68 E-value=0.12 Score=53.10 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=59.8
Q ss_pred EEEEecchH------HHHHHHHHHHhh---cCccEEEEEECCCCcCHHHHHHHhcc-CCce-EEEEeCCC-cchHHHHHH
Q 037991 284 ICTMLRNQA------RFIREWVMYHAR---IGVQRWFIYDNNSNDNIESVIDSLSS-EKFN-ITRHVWPW-IKTQEAGFA 351 (560)
Q Consensus 284 Vc~i~~NEa------~~L~EwIe~h~~---~Gvd~f~IyDn~StD~T~eIL~~y~~-~G~~-Vt~~~wp~-~~~Q~~a~n 351 (560)
|++-++++. +.|..+|+.... ..--+|+|+|++|.+.+.+.++++.+ .+.. .....-+. .-++..+.|
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN 81 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARN 81 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHH
Confidence 455566655 455555665443 12348999999999988555555544 3432 11112121 124555667
Q ss_pred HHHHHccCCCcEEEEecCCceeecCCcchHHHHHH
Q 037991 352 HCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIR 386 (560)
Q Consensus 352 dCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~ 386 (560)
..+..+ .++||+|+|+|=++.+. .|..+++
T Consensus 82 ~g~~~A--~~d~l~flD~D~i~~~~---~i~~~~~ 111 (281)
T PF10111_consen 82 IGAKYA--RGDYLIFLDADCIPSPD---FIEKLLN 111 (281)
T ss_pred HHHHHc--CCCEEEEEcCCeeeCHH---HHHHHHH
Confidence 766664 99999999999998764 3555554
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.56 E-value=0.11 Score=55.12 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=74.8
Q ss_pred EEEEEEecchHHHHHHHHHHHhhc--C--ccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchH-----------
Q 037991 282 MCICTMLRNQARFIREWVMYHARI--G--VQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQ----------- 346 (560)
Q Consensus 282 lsVc~i~~NEa~~L~EwIe~h~~~--G--vd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q----------- 346 (560)
+.|+++++|.++.|.++|+....+ + -.+++|+++|+.+++.++++.|. .+ |+....+..+..
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-~~--i~~i~~~~~~~~~~~~~~~~~~y 78 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-DG--VTHIQHPPISIKNVNPPHKFQGY 78 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-cc--cEEEEcccccccccCcccccchh
Confidence 457788999999999999987755 4 36799999999999999998883 12 322222211111
Q ss_pred -------HHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEE
Q 037991 347 -------EAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRI 399 (560)
Q Consensus 347 -------~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~ 399 (560)
+.+.+..... ..++.++++|-|=.+.|.--.=+.+.+..+..++++.+|+-
T Consensus 79 ~~ia~hyk~aln~vF~~--~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa 136 (334)
T cd02514 79 YRIARHYKWALTQTFNL--FGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISA 136 (334)
T ss_pred hHHHHHHHHHHHHHHHh--cCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEe
Confidence 1133433333 37999999999999887532234455555555557777764
No 63
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=95.06 E-value=0.17 Score=59.04 Aligned_cols=100 Identities=8% Similarity=0.044 Sum_probs=66.6
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHh-hcCc--cEEEEEECCCCcCHHHHHHHhccC-C-ceEEEEeCCCcchHHHHHH
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHA-RIGV--QRWFIYDNNSNDNIESVIDSLSSE-K-FNITRHVWPWIKTQEAGFA 351 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~-~~Gv--d~f~IyDn~StD~T~eIL~~y~~~-G-~~Vt~~~wp~~~~Q~~a~n 351 (560)
+....++|.+-++||+..+.+.+++.. .+-- =+|++.+.+++|.|.++++++.+. + ..+....-++...-..++|
T Consensus 60 ~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN 139 (727)
T PRK11234 60 PDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLN 139 (727)
T ss_pred CCCCCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHH
Confidence 344578999889999999999999753 2221 367887778888999999988654 2 2222222233333333566
Q ss_pred HHHHHc-------cCCCcEEEEecCCceeecC
Q 037991 352 HCALRA-------RDVCNWVGFIDVDEFFRLP 376 (560)
Q Consensus 352 dCl~r~-------~~~~dWVlflDaDEfL~p~ 376 (560)
.++... +..++-++++|+|-.+.|.
T Consensus 140 ~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 140 NVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred HHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 655443 2356778889999999874
No 64
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=86.86 E-value=5.4 Score=46.59 Aligned_cols=99 Identities=7% Similarity=0.010 Sum_probs=60.2
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHh-hcCc--cEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCc--chHHHHHHH
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHA-RIGV--QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWI--KTQEAGFAH 352 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~-~~Gv--d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~--~~Q~~a~nd 352 (560)
....++|.+-.+||+..|.+.|++.. .+-- -+|+|.....+++|.+.++++...-..+....-|.. ..-..++|.
T Consensus 69 ~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~ 148 (703)
T PRK15489 69 DEQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNW 148 (703)
T ss_pred CCCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHH
Confidence 34578999899999999999999852 2222 345553222355888888888644213333333322 222234555
Q ss_pred HHHHc-------cCCCcEEEEecCCceeecC
Q 037991 353 CALRA-------RDVCNWVGFIDVDEFFRLP 376 (560)
Q Consensus 353 Cl~r~-------~~~~dWVlflDaDEfL~p~ 376 (560)
.+... +...+-|+.+|+|..+.|.
T Consensus 149 ~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~ 179 (703)
T PRK15489 149 IIQAIFRYEAGHGIEFAGVILHDSEDVLHPL 179 (703)
T ss_pred HHHHHHhhhhhccCccceEEEEcCCCCCChh
Confidence 44331 1233459999999999874
No 65
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=85.59 E-value=18 Score=38.86 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=64.1
Q ss_pred eEEEEEEecchHHHH-HHHHHHHhhcCccEEEEEECCCCc-C---------HHHHHHHhccCCce-EEEEeCCC------
Q 037991 281 EMCICTMLRNQARFI-REWVMYHARIGVQRWFIYDNNSND-N---------IESVIDSLSSEKFN-ITRHVWPW------ 342 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L-~EwIe~h~~~Gvd~f~IyDn~StD-~---------T~eIL~~y~~~G~~-Vt~~~wp~------ 342 (560)
+|==|.++.||-+.| ..+-|.+ -=||.|+|+.++.|- + ..+-.+.+.+ .+. ++....+.
T Consensus 80 rV~D~~~f~~ElDlLeiRl~eL~--~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~-KIiy~~l~~~~~~g~~~~ 156 (356)
T PF04724_consen 80 RVYDCFLFNNELDLLEIRLNELY--DVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHD-KIIYVTLDDPPEKGRKDP 156 (356)
T ss_pred eEEEEEEeCChHHHHHHHHHHhh--CcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhc-ceEEEEecCcCCCCCCch
Confidence 455556677898888 4444433 248999999988762 1 2233333332 211 12222221
Q ss_pred ---cchHHHHHHHHH-HHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEEEeeeeC
Q 037991 343 ---IKTQEAGFAHCA-LRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRISCHSFG 405 (560)
Q Consensus 343 ---~~~Q~~a~ndCl-~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~~~~~fg 405 (560)
...|+.++..-+ .......|-+++-|+||+..+. -..+|+..++.+..-.+++.+..|+
T Consensus 157 w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~----~l~~Lr~cd~~p~~l~l~lr~y~Ys 219 (356)
T PF04724_consen 157 WDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPE----TLKFLRWCDGFPEPLHLRLRFYYYS 219 (356)
T ss_pred hHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHH----HHHHHHhcCCCCCeeEEEeeceEEE
Confidence 123444332211 1234689999999999997753 3455666544334445666655543
No 66
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=80.71 E-value=15 Score=38.07 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCCceEEEEEEecchHHHHHHHHHHHhhcCccE----EEEEECCCC--cCHHHHHHHhccC----C-----c-eEEEE-
Q 037991 276 AEKDHEMCICTMLRNQARFIREWVMYHARIGVQR----WFIYDNNSN--DNIESVIDSLSSE----K-----F-NITRH- 338 (560)
Q Consensus 276 ~~~~~~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~----f~IyDn~St--D~T~eIL~~y~~~----G-----~-~Vt~~- 338 (560)
...+-.|-|++-.+|-+.++.++.+....+--.| +=+..+.++ |++.+.|+.+.+. + . .|+..
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~ 100 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILR 100 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEc
Confidence 3455678888889999999999998766554322 334556666 8888877754211 1 1 13332
Q ss_pred -eCCC-----------cchHHHH-------HHHHHHHcc-CCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 339 -VWPW-----------IKTQEAG-------FAHCALRAR-DVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 339 -~wp~-----------~~~Q~~a-------~ndCl~r~~-~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
++.. ...|... =|..+..+- ..++||+++|+|=...|+ .-|+++++.
T Consensus 101 ~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~--~lI~dli~~ 167 (269)
T PF03452_consen 101 KDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPP--TLIQDLIAH 167 (269)
T ss_pred CCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCCh--HHHHHHHhC
Confidence 2211 2234221 122222332 389999999999886664 237777765
No 67
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=78.97 E-value=4.4 Score=41.20 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=32.6
Q ss_pred ecchHHHHH-----HHHHHHhhcCccEEE--EEECCCCcCHHHHHHHhc
Q 037991 288 LRNQARFIR-----EWVMYHARIGVQRWF--IYDNNSNDNIESVIDSLS 329 (560)
Q Consensus 288 ~~NEa~~L~-----EwIe~h~~~Gvd~f~--IyDn~StD~T~eIL~~y~ 329 (560)
.+|.++.|. +.|+-...+|-++++ ||.|+|+|+|.++|+.+.
T Consensus 8 l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~ 56 (241)
T PF11735_consen 8 LYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALD 56 (241)
T ss_pred cccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHH
Confidence 346555553 555566678999998 899999999999999875
No 68
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.68 E-value=14 Score=41.64 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCCceEEEEEEecchHH-----HHHHHHHHHhhcCc-cEEE-EEECCCCcCHHHHH---------HHhccCCceEEEEeC
Q 037991 277 EKDHEMCICTMLRNQAR-----FIREWVMYHARIGV-QRWF-IYDNNSNDNIESVI---------DSLSSEKFNITRHVW 340 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~-----~L~EwIe~h~~~Gv-d~f~-IyDn~StD~T~eIL---------~~y~~~G~~Vt~~~w 340 (560)
++.++-++..-++||.. -|...-|+...-|. +||= ++.++|.|....++ ++....| +|.+..-
T Consensus 141 p~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~-~ifYRrR 219 (736)
T COG2943 141 PDLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEG-NIFYRRR 219 (736)
T ss_pred CcccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCC-ceeeehH
Confidence 34566677777899973 34556666555453 3432 23344566554443 3443333 2433211
Q ss_pred C-CcchHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEE
Q 037991 341 P-WIKTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 341 p-~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~ 398 (560)
. ..+.-...+.|...|-...+++++.+|+|-+.... .+..+.+..+.+|++|-|.
T Consensus 220 r~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd---~lvrLv~~ME~~P~aGlIQ 275 (736)
T COG2943 220 RRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGD---CLVRLVRLMEANPDAGLIQ 275 (736)
T ss_pred hhhhcccccCHHHHHHHhCcccceEEEeecccccCch---HHHHHHHHHhhCCCCceee
Confidence 1 11222224566668888999999999999998754 4444444444445566554
No 69
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=68.83 E-value=30 Score=37.20 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=61.4
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCC----cCH---HHHHHHhcc----CCceEEEEeCCCc------
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSN----DNI---ESVIDSLSS----EKFNITRHVWPWI------ 343 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~St----D~T---~eIL~~y~~----~G~~Vt~~~wp~~------ 343 (560)
.++|++-++||.-.|.|=+-. .+=.+-.+|+.+||+ |.. .++++.+.+ .++ +.++..|+.
T Consensus 52 ~mAIVVP~KdE~l~lleGVL~--gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i-~vHQkDp~la~Af~~ 128 (393)
T PRK14503 52 RMAIVVPVKNERLKLLEGVLK--GIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPII-IVHQKDPGLAEALKE 128 (393)
T ss_pred CcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceE-EEEcCCHHHHHHHHH
Confidence 578888899998777665542 122344556556663 322 234554432 222 333433321
Q ss_pred ---------------chHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCC-----CCCEeEEEEEeee
Q 037991 344 ---------------KTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG-----DGSVAELRISCHS 403 (560)
Q Consensus 344 ---------------~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~-----~~~v~ai~~~~~~ 403 (560)
+.-+..+--.++......+||.|+|+|-++.- +..++...+.. .....-+++.|.+
T Consensus 129 aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG----aV~EYvk~yAAGf~ma~spytMVRi~W~~ 204 (393)
T PRK14503 129 AGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG----AVNEYVKIYAAGFLMAESPYTMVRIHWRY 204 (393)
T ss_pred cCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc----hHHHHHHHHHhhhcccCCCCceEEEEecC
Confidence 11111111112222358999999999999873 34444443321 1123568888876
Q ss_pred eC
Q 037991 404 FG 405 (560)
Q Consensus 404 fg 405 (560)
..
T Consensus 205 KP 206 (393)
T PRK14503 205 KP 206 (393)
T ss_pred CC
Confidence 54
No 70
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=67.88 E-value=34 Score=36.65 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=60.8
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCC----cCH---HHHHHHhcc----CCceEEEEeCCCc------
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSN----DNI---ESVIDSLSS----EKFNITRHVWPWI------ 343 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~St----D~T---~eIL~~y~~----~G~~Vt~~~wp~~------ 343 (560)
.++|++-++||.-.|.|=+-. .+=.+-.+|+.+||+ |.. .++++.+.+ .++ +.++..|+.
T Consensus 51 ~maIVVP~KdE~l~lleGVL~--gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i-~vHQkDp~la~Af~~ 127 (381)
T TIGR02460 51 KTAIVVPVKNEKLHLLEGVLS--GIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKII-IIHQKDPALAEAFKE 127 (381)
T ss_pred CcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceE-EEEcCCHHHHHHHHH
Confidence 578888899998777665542 122344555555553 322 234544432 222 333433321
Q ss_pred ---------------chHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCC-----CCCEeEEEEEeee
Q 037991 344 ---------------KTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG-----DGSVAELRISCHS 403 (560)
Q Consensus 344 ---------------~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~-----~~~v~ai~~~~~~ 403 (560)
+.-+..+--.++......+||.|+|+|-++.- +..++...+.. ......+++.|.+
T Consensus 128 ~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG----aV~EYvk~yAaGf~ma~spy~MVRi~W~~ 203 (381)
T TIGR02460 128 VGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG----AVNEYVKIYAAGFLMATSPYSMVRIHWRY 203 (381)
T ss_pred cCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc----hHHHHHHHHHhhhcccCCCCeeEEEEecC
Confidence 11111111112222258999999999999873 34444443321 1124568888876
Q ss_pred eC
Q 037991 404 FG 405 (560)
Q Consensus 404 fg 405 (560)
..
T Consensus 204 KP 205 (381)
T TIGR02460 204 KP 205 (381)
T ss_pred CC
Confidence 54
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=62.97 E-value=72 Score=29.08 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecC
Q 037991 290 NQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDV 369 (560)
Q Consensus 290 NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDa 369 (560)
+....|...|+-....|+++|+|..+. + ++.+.+.+.+..+...+-+. .+...++..++... ...+|++++-+
T Consensus 22 ~g~~li~~~l~~l~~~~~~~Ivvv~~~--~---~~~~~~~~~~~~~v~~~~~~-~G~~~sl~~a~~~~-~~~~~vlv~~~ 94 (160)
T PF12804_consen 22 GGKPLIERVLEALREAGVDDIVVVTGE--E---EIYEYLERYGIKVVVDPEPG-QGPLASLLAALSQL-PSSEPVLVLPC 94 (160)
T ss_dssp TTEEHHHHHHHHHHHHTESEEEEEEST--H---HHHHHHTTTTSEEEE-STSS-CSHHHHHHHHHHTS-TTSSEEEEEET
T ss_pred CCccHHHHHHHHhhccCCceEEEecCh--H---HHHHHHhccCceEEEecccc-CChHHHHHHHHHhc-ccCCCcEEEeC
Confidence 555677777777777789999999986 3 34444444465444333222 44444444444432 28999999999
Q ss_pred CceeecCCcchHHHHHHhc
Q 037991 370 DEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 370 DEfL~p~~~~sI~d~L~~~ 388 (560)
|=-+.. .+.+..+++..
T Consensus 95 D~p~~~--~~~l~~l~~~~ 111 (160)
T PF12804_consen 95 DQPFLS--PELLRRLLEAL 111 (160)
T ss_dssp TETTS---HHHHHHHHHHH
T ss_pred CccccC--HHHHHHHHHHH
Confidence 984432 23455555553
No 72
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=56.15 E-value=1.7e+02 Score=31.40 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHh-hcCccEEEEEECCCCcCHHHHHHHhcc
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHA-RIGVQRWFIYDNNSNDNIESVIDSLSS 330 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~-~~Gvd~f~IyDn~StD~T~eIL~~y~~ 330 (560)
.+.++.+++.+.|.+.+|.--||+.+ ..|+++..+.-+ .|...++++++++
T Consensus 115 a~~~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifS--HD~~~~eiN~~I~ 166 (455)
T KOG2791|consen 115 AKDRVVLVLQVHNRPQYLRVLVESLRKVKGISETLLIFS--HDGYFEEINRIIE 166 (455)
T ss_pred ccceEEEEEEEcCcHHHHHHHHHHHHhccCccceEEEEe--ccchHHHHHHHHh
Confidence 34567777889999999988888776 579988776654 6888888888765
No 73
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=53.48 E-value=49 Score=35.63 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=50.7
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCC----cCH---HHHHHHhccCC---ceEEEEeCCC--------
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSN----DNI---ESVIDSLSSEK---FNITRHVWPW-------- 342 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~St----D~T---~eIL~~y~~~G---~~Vt~~~wp~-------- 342 (560)
.++|++-++||.-.|.|=+-. .+=.+=.+|+.+||+ |.. .++++.+.+.. ..+.++.-|+
T Consensus 51 ~maIVVP~KnE~l~lleGVL~--gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~Af~~a 128 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGVLS--GIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEAFKEA 128 (381)
T ss_dssp TEEEEEEESS--HHHHHHHHH--CS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHHHHHT
T ss_pred CcEEEEECCCCchhhhhhhhh--cCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHHHHHc
Confidence 578888899999777665543 122344455445554 332 34566553321 1123332221
Q ss_pred -------------cchHHHH-HHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCC-----CCCEeEEEEEeee
Q 037991 343 -------------IKTQEAG-FAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG-----DGSVAELRISCHS 403 (560)
Q Consensus 343 -------------~~~Q~~a-~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~-----~~~v~ai~~~~~~ 403 (560)
.+.-+.. +.-.+.+ ....+||.|+|+|-++.- +..++.+.+.. .....-+++.|.+
T Consensus 129 Gy~~il~~~g~VR~GKgEGMiiGillAk-~~g~~YVGFvDADNyiPG----aV~EYvk~yAAGf~ms~spytMVRi~W~~ 203 (381)
T PF09488_consen 129 GYPEILDEDGLVRNGKGEGMIIGILLAK-APGKRYVGFVDADNYIPG----AVNEYVKDYAAGFAMSESPYTMVRIHWRS 203 (381)
T ss_dssp T--TTB-TTSSB-SSHHHHHHHHHHHHH-HTT-SEEEE--TTBS-HH----HHHHHHHHHHHHHHC-SSSCEEEEEE---
T ss_pred CcHHHhCCCCceecCchHHHHHHHHHHH-hcCCceEeEeeccCCCcc----hHHHHHHHHHhhhcccCCCceEEEEEecC
Confidence 0111111 1112222 269999999999999863 34444443211 1134678999987
Q ss_pred eCC
Q 037991 404 FGP 406 (560)
Q Consensus 404 fg~ 406 (560)
..+
T Consensus 204 KPK 206 (381)
T PF09488_consen 204 KPK 206 (381)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 74
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=52.00 E-value=80 Score=36.98 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=62.8
Q ss_pred eEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCC----cCH---HHHHHHhcc----CCceEEEEeCCCc------
Q 037991 281 EMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSN----DNI---ESVIDSLSS----EKFNITRHVWPWI------ 343 (560)
Q Consensus 281 ~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~St----D~T---~eIL~~y~~----~G~~Vt~~~wp~~------ 343 (560)
.++|++-++||.-.|.|=+-. .+=.+-.+|+.+||+ |.. .++++.+.+ .+. +.++..|+.
T Consensus 56 ~~aivvp~k~e~~~~~~gvl~--~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~-~vhq~dp~~a~a~~~ 132 (694)
T PRK14502 56 KMAIVLPIKDEDLKVFEGVLS--GIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAI-VVHQKNPELANAIAD 132 (694)
T ss_pred CcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceE-EEEcCCHHHHHHHHH
Confidence 578888899998777665542 122355666666665 332 234555432 222 333333321
Q ss_pred ---------------chHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcCC-----CCCEeEEEEEeee
Q 037991 344 ---------------KTQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLSG-----DGSVAELRISCHS 403 (560)
Q Consensus 344 ---------------~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~-----~~~v~ai~~~~~~ 403 (560)
+.-+..+--.++......+||.|+|+|-++.- +..++...+.. .....-+++.|.+
T Consensus 133 ~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg----~v~ey~~~yaag~~~~~~~~~mvri~w~~ 208 (694)
T PRK14502 133 AGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPG----AVWEYAKHFATGFNLAQSPYSMVRILWKY 208 (694)
T ss_pred cCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCc----hHHHHHHHHHhhhcccCCCCeeEEEEecC
Confidence 11111111112222368999999999999873 34444443321 1123567888876
Q ss_pred eC
Q 037991 404 FG 405 (560)
Q Consensus 404 fg 405 (560)
..
T Consensus 209 kp 210 (694)
T PRK14502 209 KP 210 (694)
T ss_pred CC
Confidence 54
No 75
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=51.49 E-value=65 Score=30.75 Aligned_cols=89 Identities=16% Similarity=0.029 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCce
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEf 372 (560)
..|...|+.....|+++|+|+.+...+...+.+......|..+....-+....+..++..++... ..+.++++++|-+
T Consensus 30 pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~--~~~~~lv~~~D~~ 107 (217)
T cd04181 30 PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFL--GDDDFLVVNGDVL 107 (217)
T ss_pred eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhc--CCCCEEEEECCee
Confidence 55666666666678999999887544443333333211243343332222233433444443322 5788999999986
Q ss_pred eecCCcchHHHHHHh
Q 037991 373 FRLPSGLILHDLIRN 387 (560)
Q Consensus 373 L~p~~~~sI~d~L~~ 387 (560)
+.. ++.++++.
T Consensus 108 ~~~----~~~~~~~~ 118 (217)
T cd04181 108 TDL----DLSELLRF 118 (217)
T ss_pred cCc----CHHHHHHH
Confidence 543 35555543
No 76
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=50.87 E-value=48 Score=32.11 Aligned_cols=89 Identities=8% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCce
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEf 372 (560)
..|...|+.....|+++++|+.+...+...+.++. .+..+.... ...++..++.+|+.......+.++++++|.-
T Consensus 27 pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~--~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p 101 (229)
T cd02540 27 PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---PNVEFVLQE--EQLGTGHAVKQALPALKDFEGDVLVLYGDVP 101 (229)
T ss_pred cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---CCcEEEECC--CCCCCHHHHHHHHHhhccCCCeEEEEeCCcc
Confidence 56666676666678999888886443333333332 244332222 2233444555555443223688999999994
Q ss_pred eecCCcchHHHHHHhc
Q 037991 373 FRLPSGLILHDLIRNL 388 (560)
Q Consensus 373 L~p~~~~sI~d~L~~~ 388 (560)
+.. ...+.++++..
T Consensus 102 ~~~--~~~i~~l~~~~ 115 (229)
T cd02540 102 LIT--PETLQRLLEAH 115 (229)
T ss_pred ccC--HHHHHHHHHHH
Confidence 332 23466666554
No 77
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=50.29 E-value=1.3e+02 Score=28.73 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCce
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEf 372 (560)
..|...|+.....|+++++|..+...+...+.+.....-|..+....-....+...++..++.. ...++++.+.+|.+
T Consensus 30 pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~--~~~~~~lv~~~D~~ 107 (223)
T cd06915 30 PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPK--LPEDQFLVLNGDTY 107 (223)
T ss_pred chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhh--cCCCCEEEEECCcc
Confidence 4555555555556899999987644343333333211113323221111111222223333222 14689999999996
Q ss_pred eecCCcchHHHHHHhc
Q 037991 373 FRLPSGLILHDLIRNL 388 (560)
Q Consensus 373 L~p~~~~sI~d~L~~~ 388 (560)
+. .++.++++.+
T Consensus 108 ~~----~~~~~~l~~~ 119 (223)
T cd06915 108 FD----VDLLALLAAL 119 (223)
T ss_pred cC----CCHHHHHHHH
Confidence 52 2466666654
No 78
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=47.30 E-value=1.6e+02 Score=29.08 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=55.1
Q ss_pred EEEEEEe-cchHHHHHHHHHHHhhcCccEEEE-EECCCCcCHHHHHHHhccCCceEEEE------eCCCcchHHHHHHHH
Q 037991 282 MCICTML-RNQARFIREWVMYHARIGVQRWFI-YDNNSNDNIESVIDSLSSEKFNITRH------VWPWIKTQEAGFAHC 353 (560)
Q Consensus 282 lsVc~i~-~NEa~~L~EwIe~h~~~Gvd~f~I-yDn~StD~T~eIL~~y~~~G~~Vt~~------~wp~~~~Q~~a~ndC 353 (560)
||-.+++ ++..+.|..++.... ..-..|+| +|..+.+...+-++.+.+...+|... .|-++ .|..|.-.|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~-~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~-S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY-HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGF-SLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSH-HHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc-CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCc-cHHHHHHHH
Confidence 3455667 558888888888654 33445655 56666666666555543322234333 24332 344443333
Q ss_pred HHHc---cCCCcEEEEecCCceeecCCcchHHHHHHhcC
Q 037991 354 ALRA---RDVCNWVGFIDVDEFFRLPSGLILHDLIRNLS 389 (560)
Q Consensus 354 l~r~---~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~ 389 (560)
+..+ ....+|+.+|-.+.+..- ....|.++++...
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~-s~~~i~~~l~~~~ 116 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLK-SNEEIHEFLESNN 116 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHTT
T ss_pred HHHHHhcCCCCcEEEEccccccccc-chHHHHHHHHhcC
Confidence 3322 248999999999998764 3456899998863
No 79
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=46.99 E-value=1.9e+02 Score=31.59 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCceEEEEE-Eec---chHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEe---------CCCcc
Q 037991 278 KDHEMCICT-MLR---NQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHV---------WPWIK 344 (560)
Q Consensus 278 ~~~~lsVc~-i~~---NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~---------wp~~~ 344 (560)
+-..+||.- +.+ |--.+|+.++.... +-=++.+.-+.++|...++++.+.+.-.+|+-.- -|...
T Consensus 83 ~LPgVSiikPl~G~d~nl~~Nlesffts~Y--~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKIn 160 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDPNLYHNLESFFTSQY--HKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKIN 160 (431)
T ss_pred CCCCceEEeecccCCchhHHhHHHHHhhcc--CceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhh
Confidence 445777773 333 44467788877432 2336777777788888777666644322232111 13345
Q ss_pred hHHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHhcC
Q 037991 345 TQEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRNLS 389 (560)
Q Consensus 345 ~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~~~ 389 (560)
+|..+|.- ..+|.|++.|.|=++-| ++|.|+..+..
T Consensus 161 N~mpgy~~------a~ydlvlisDsgI~m~p---dtildm~t~M~ 196 (431)
T KOG2547|consen 161 NMMPGYRA------AKYDLVLISDSGIFMKP---DTILDMATTMM 196 (431)
T ss_pred ccCHHHHH------hcCCEEEEecCCeeecC---chHHHHHHhhh
Confidence 56555443 47889999999999887 46777766654
No 80
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.52 E-value=69 Score=29.65 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCC
Q 037991 291 QARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVD 370 (560)
Q Consensus 291 Ea~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaD 370 (560)
....|...|+.....|+++++|..+...+ ++.+.+...+..+....-+ ..+...++..++.......+|++++.+|
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~---~~~~~~~~~~~~~~~~~~~-~~G~~~~i~~al~~~~~~~~~vlv~~~D 100 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEAD---AVRAALAGLPVVVVINPDW-EEGMSSSLAAGLEALPADADAVLILLAD 100 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHH---HHHHHhcCCCeEEEeCCCh-hhCHHHHHHHHHHhccccCCEEEEEeCC
Confidence 34455555665555578999988653222 2333333334322211111 1233334444444332247999999999
Q ss_pred ceeecCCcchHHHHHHhcC
Q 037991 371 EFFRLPSGLILHDLIRNLS 389 (560)
Q Consensus 371 EfL~p~~~~sI~d~L~~~~ 389 (560)
--+... ..+..+++...
T Consensus 101 ~P~i~~--~~i~~l~~~~~ 117 (186)
T cd04182 101 QPLVTA--ETLRALIDAFR 117 (186)
T ss_pred CCCCCH--HHHHHHHHHHH
Confidence 844432 34556655543
No 81
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=43.56 E-value=1e+02 Score=34.13 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=57.8
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHhh-cCc---cEEEEEECCCCcCHHHHHHHhccCCceEEEEeC---------CCc-
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHAR-IGV---QRWFIYDNNSNDNIESVIDSLSSEKFNITRHVW---------PWI- 343 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~~-~Gv---d~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~w---------p~~- 343 (560)
....+.|.+++.|-+.+|.++|+.... .+. -.|+|..++..+.+.++++.|.+ .++.... |..
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~---~v~~i~~~~~~~i~~~~~~~ 167 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGD---QVTYIQHPDFSPITIPPKEK 167 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGG---GSEEEE-S--S-----TT-G
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhh---hheeeecCCcCCceeCcccc
Confidence 334577778999999999999886543 233 25899999999999999999943 2222221 111
Q ss_pred ---chH------HHHHHHHHHHccCCCcEEEEecCCceeecCCcc---hHHHHHHhcCCCCCEeEEE
Q 037991 344 ---KTQ------EAGFAHCALRARDVCNWVGFIDVDEFFRLPSGL---ILHDLIRNLSGDGSVAELR 398 (560)
Q Consensus 344 ---~~Q------~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~---sI~d~L~~~~~~~~v~ai~ 398 (560)
+.. +.++++... ...++-|+++.-|=.+.|.--. ....+|++ ++++.+++
T Consensus 168 ~~~~y~~IA~HYk~aL~~vF~--~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~---D~sl~ciS 229 (434)
T PF03071_consen 168 KFKGYYKIARHYKWALSQVFN--KFKYSSVIILEDDLEISPDFFEYFSATLPLLEN---DPSLWCIS 229 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHH--TS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH----TTEEEEE
T ss_pred cccchHHHHHHHHHHHHHHHH--hcCCceEEEEecCcccCccHHHHHHHHHHHHhc---CCCeEEEE
Confidence 001 112223222 2467889999999888764221 23344443 34677665
No 82
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=42.74 E-value=1.4e+02 Score=27.79 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCCceEEEEEEecchHHHHHHHHHHHh----hcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHH
Q 037991 277 EKDHEMCICTMLRNQARFIREWVMYHA----RIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAH 352 (560)
Q Consensus 277 ~~~~~lsVc~i~~NEa~~L~EwIe~h~----~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~nd 352 (560)
..++++||++-++|.++.|..|+.|.. .+..+.=+++.+.++++...-..-+ -.+|..
T Consensus 44 ~~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~~~~~FNRg~L~------------------NvGf~e 105 (136)
T PF13733_consen 44 KPRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQVDNGPFNRGKLM------------------NVGFLE 105 (136)
T ss_dssp B-S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSS---HHHHH------------------HHHHHH
T ss_pred ccccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeeccCCCCchhhhh------------------hHHHHH
Confidence 356799999999999999988888642 2344433333333333322111111 113444
Q ss_pred HHHHccCCCcEEEEecCCce
Q 037991 353 CALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 353 Cl~r~~~~~dWVlflDaDEf 372 (560)
++.. ...+.++|-|+|=.
T Consensus 106 A~~~--~~~dc~ifHDVDll 123 (136)
T PF13733_consen 106 ALKD--DDFDCFIFHDVDLL 123 (136)
T ss_dssp HHHH--S--SEEEEE-TTEE
T ss_pred Hhhc--cCCCEEEEeccccc
Confidence 5444 46889999999954
No 83
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=41.64 E-value=27 Score=34.88 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=27.2
Q ss_pred HHHHHHc-cCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 351 AHCALRA-RDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 351 ndCl~r~-~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
.||+... ...++||+|+|+|=-++-+. ..|.++|+.
T Consensus 31 RHCvva~~L~~~~~vlflDaDigVvNp~-~~iEefid~ 67 (222)
T PF03314_consen 31 RHCVVAKILPEYDWVLFLDADIGVVNPN-RRIEEFIDE 67 (222)
T ss_pred HHHHHHHHhccCCEEEEEcCCceeecCc-ccHHHhcCC
Confidence 4786643 46889999999999888653 358899843
No 84
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.02 E-value=1.2e+02 Score=33.13 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=54.2
Q ss_pred CceEEEEEEecchH-HHHHHHHHHHhh----cCccEEEEEECCCCc-CHHHHHHHhccC--CceEEEEeCCCcchHHHHH
Q 037991 279 DHEMCICTMLRNQA-RFIREWVMYHAR----IGVQRWFIYDNNSND-NIESVIDSLSSE--KFNITRHVWPWIKTQEAGF 350 (560)
Q Consensus 279 ~~~lsVc~i~~NEa-~~L~EwIe~h~~----~Gvd~f~IyDn~StD-~T~eIL~~y~~~--G~~Vt~~~wp~~~~Q~~a~ 350 (560)
-.+.||++++.||. .-|...+-+... .-..+|+++|+.|+. ...+-|++|... |. |.+..-.....-.++-
T Consensus 154 Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGl-VkV~Rne~REGLI~aR 232 (603)
T KOG3737|consen 154 LPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGL-VKVFRNERREGLIQAR 232 (603)
T ss_pred CCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCE-EEEEecchhhhhhhhh
Confidence 34778988999998 455555544321 124689999998874 567888888763 65 4333211111101100
Q ss_pred HHHHHHccCCCcEEEEecCCceee
Q 037991 351 AHCALRARDVCNWVGFIDVDEFFR 374 (560)
Q Consensus 351 ndCl~r~~~~~dWVlflDaDEfL~ 374 (560)
+--+. ++..+=++|+||-=-+.
T Consensus 233 SiGA~--~atGeV~ifLDAHCEVn 254 (603)
T KOG3737|consen 233 SIGAQ--KATGEVLIFLDAHCEVN 254 (603)
T ss_pred ccchh--hccccEEEEEecceeee
Confidence 11112 24889999999975544
No 85
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=35.76 E-value=2.5e+02 Score=26.54 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHh-ccCCceEEEEeCCCcchHHHHHHHHHHHc-cCCCcEEEEe
Q 037991 290 NQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSL-SSEKFNITRHVWPWIKTQEAGFAHCALRA-RDVCNWVGFI 367 (560)
Q Consensus 290 NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y-~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~-~~~~dWVlfl 367 (560)
+....|...++-....++++++|..+...+....+.+.. ...++.+.... .+...+..++..++... ....+|++++
T Consensus 24 ~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~si~~gl~~~~~~~~d~vlv~ 102 (190)
T TIGR03202 24 GETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCR-DACEGQAHSLKCGLRKAEAMGADAVVIL 102 (190)
T ss_pred CCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECC-ChhhhHHHHHHHHHHHhccCCCCeEEEE
Confidence 444455555644334578999999875433222222221 22243222211 11223444444444432 2368999999
Q ss_pred cCCceeecCCcchHHHHHHhc
Q 037991 368 DVDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 368 DaDEfL~p~~~~sI~d~L~~~ 388 (560)
++|==+..+ +.|..+++..
T Consensus 103 ~~D~P~v~~--~~i~~L~~~~ 121 (190)
T TIGR03202 103 LADQPFLTA--DVINALLALA 121 (190)
T ss_pred eCCCCCCCH--HHHHHHHHHH
Confidence 999766542 4466666554
No 86
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=35.13 E-value=55 Score=32.51 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=46.2
Q ss_pred EEEEEEecchHHHHHHHHHHHhhc-CccEEEE-EECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccC
Q 037991 282 MCICTMLRNQARFIREWVMYHARI-GVQRWFI-YDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARD 359 (560)
Q Consensus 282 lsVc~i~~NEa~~L~EwIe~h~~~-Gvd~f~I-yDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~ 359 (560)
||++ ++.|.+..+.+|+++...+ +.+...| +++ ..+...=..+||.++.+ .
T Consensus 1 isiI-~c~n~~~~~~~~~~~i~~~~~~~~~~i~i~~------------------------~~~~~s~~~~yN~a~~~--a 53 (217)
T PF13712_consen 1 ISII-ICVNDEELYEECLRSIKRLIGPPGELIEIDN------------------------VRNAKSMAAAYNEAMEK--A 53 (217)
T ss_dssp EEEE-EEES-HHHHHHHHHHHHHTT--TEEEEEEE-------------------------SSS-S-TTTHHHHHGGG---
T ss_pred CEEE-EEECCHHHHHHHHHHHHhhCCCCceEEEEec------------------------cCCCcCHHHHHHHHHHh--C
Confidence 3554 4466677788888886654 3333332 222 11111222356777766 4
Q ss_pred CCcEEEEecCCceeecCCcchHHHHHHhcCCCCCEeEEEE
Q 037991 360 VCNWVGFIDVDEFFRLPSGLILHDLIRNLSGDGSVAELRI 399 (560)
Q Consensus 360 ~~dWVlflDaDEfL~p~~~~sI~d~L~~~~~~~~v~ai~~ 399 (560)
.+++++|+.-|=+|.... -+.++++.+..++++|.+.+
T Consensus 54 ~~~ylvflHqDv~i~~~~--~l~~il~~~~~~~~~G~iGv 91 (217)
T PF13712_consen 54 KAKYLVFLHQDVFIINEN--WLEDILEIFEEDPNIGMIGV 91 (217)
T ss_dssp -SSEEEEEETTEE-SSHH--HHHHHHHHHHH-TTEEEEES
T ss_pred CCCEEEEEeCCeEEcchh--HHHHHHHHHhhCCCccEEEe
Confidence 888999999998887532 24444444422346766554
No 87
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=35.12 E-value=1.7e+02 Score=28.71 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhhc-CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecC
Q 037991 291 QARFIREWVMYHARI-GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDV 369 (560)
Q Consensus 291 Ea~~L~EwIe~h~~~-Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDa 369 (560)
....|...|+..... |+++|+|..+ .+...+.+..+ |..+....-+....- ..+..++.......++++.+++
T Consensus 25 gkpll~~~l~~l~~~~~i~~ivvv~~--~~~i~~~~~~~---~~~~~~~~~~~~~gt-~~~~~~~~~~~~~~d~vlv~~g 98 (239)
T cd02517 25 GKPMIQHVYERAKKAKGLDEVVVATD--DERIADAVESF---GGKVVMTSPDHPSGT-DRIAEVAEKLDADDDIVVNVQG 98 (239)
T ss_pred CcCHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHc---CCEEEEcCcccCchh-HHHHHHHHhcCCCCCEEEEecC
Confidence 345555556655555 8999998754 24444444433 544433211111111 1222333222222489999999
Q ss_pred Cc-eeecCCcchHHHHHHhc
Q 037991 370 DE-FFRLPSGLILHDLIRNL 388 (560)
Q Consensus 370 DE-fL~p~~~~sI~d~L~~~ 388 (560)
|- ++.+ ..|..+++.+
T Consensus 99 D~Pli~~---~~l~~l~~~~ 115 (239)
T cd02517 99 DEPLIPP---EMIDQVVAAL 115 (239)
T ss_pred CCCCCCH---HHHHHHHHHH
Confidence 98 5543 4566666654
No 88
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=32.69 E-value=1.8e+02 Score=29.24 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=42.8
Q ss_pred ceEEEEEEecchHHHHHHHHHHHh----hcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHH--HHHHHH
Q 037991 280 HEMCICTMLRNQARFIREWVMYHA----RIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQE--AGFAHC 353 (560)
Q Consensus 280 ~~lsVc~i~~NEa~~L~EwIe~h~----~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~--~a~ndC 353 (560)
+++||++-++|..+.|..|+.|.. .+++++-+++.+...+... .++.. .++..+
T Consensus 2 ~~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~~~~F--------------------NR~~llNvG~~~a 61 (219)
T cd00899 2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGNFRF--------------------NRAKLLNVGFLEA 61 (219)
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCCccc--------------------hhhhhhhHHHHHH
Confidence 678999999999998888877633 4567654444343332221 11111 123333
Q ss_pred HHHccCCCcEEEEecCCce
Q 037991 354 ALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 354 l~r~~~~~dWVlflDaDEf 372 (560)
+.. ...+.++|-|+|=.
T Consensus 62 ~k~--~~~dc~i~hDVDll 78 (219)
T cd00899 62 LKD--GDWDCFIFHDVDLL 78 (219)
T ss_pred hhc--CCccEEEEeccccc
Confidence 332 46899999999954
No 89
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=32.27 E-value=1.7e+02 Score=28.58 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhc-CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCC
Q 037991 292 ARFIREWVMYHARI-GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVD 370 (560)
Q Consensus 292 a~~L~EwIe~h~~~-Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaD 370 (560)
-..|...|+..... |+++++|..+ .+...+.++.+ |..+....-...... ..+..++... ..++++++++|
T Consensus 27 kPli~~~i~~l~~~~~~~~ivv~t~--~~~i~~~~~~~---~~~v~~~~~~~~~g~-~~~~~a~~~~--~~d~~lv~~~D 98 (238)
T PRK13368 27 KPMIQHVYERAAQAAGVEEVYVATD--DQRIEDAVEAF---GGKVVMTSDDHLSGT-DRLAEVMLKI--EADIYINVQGD 98 (238)
T ss_pred cCHHHHHHHHHHhcCCCCeEEEECC--hHHHHHHHHHc---CCeEEecCccCCCcc-HHHHHHHHhC--CCCEEEEEcCC
Confidence 33444445555555 7999998654 34555555554 654432211111111 1223333332 56899999999
Q ss_pred c-eeecCCcchHHHHHHhc
Q 037991 371 E-FFRLPSGLILHDLIRNL 388 (560)
Q Consensus 371 E-fL~p~~~~sI~d~L~~~ 388 (560)
- ++.+ ..|.++++..
T Consensus 99 ~P~i~~---~~i~~l~~~~ 114 (238)
T PRK13368 99 EPMIRP---RDIDTLIQPM 114 (238)
T ss_pred cCcCCH---HHHHHHHHHH
Confidence 8 4443 3455665544
No 90
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=31.85 E-value=49 Score=23.88 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=17.3
Q ss_pred cchhhhhHHHHHHHHHhhhhcccee
Q 037991 11 VLSHRFLKSYLCVIFSCVFLGGFTF 35 (560)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (560)
+.--+++|.++++.-+.++||..+|
T Consensus 14 LNRTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 14 LNRTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred echhhHHHHHHHHHHHHHHHHhhcc
Confidence 5556788888777666677766544
No 91
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.21 E-value=2e+02 Score=28.99 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCceEEEEEEecchHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCce
Q 037991 278 KDHEMCICTMLRNQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFN 334 (560)
Q Consensus 278 ~~~~lsVc~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~ 334 (560)
.+..+-+-.|+.|-.+++++|.+ .|+|-|.|.-- ++....++++...+.|..
T Consensus 60 t~~p~DvHLMV~~p~~~i~~fa~----agad~It~H~E-~~~~~~r~i~~Ik~~G~k 111 (220)
T COG0036 60 TDLPLDVHLMVENPDRYIEAFAK----AGADIITFHAE-ATEHIHRTIQLIKELGVK 111 (220)
T ss_pred CCCceEEEEecCCHHHHHHHHHH----hCCCEEEEEec-cCcCHHHHHHHHHHcCCe
Confidence 45778999999999999988887 48998888776 777778888877777765
No 92
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=28.11 E-value=4.2e+02 Score=26.36 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEE--eCCC-cchHHHHHHHHHHHccCCCcEEEEec
Q 037991 292 ARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRH--VWPW-IKTQEAGFAHCALRARDVCNWVGFID 368 (560)
Q Consensus 292 a~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~--~wp~-~~~Q~~a~ndCl~r~~~~~dWVlflD 368 (560)
...|...++-....++|+++|..+ .+...++++.+ |..+... ..++ ...+..+++.. . ....++|+.+|
T Consensus 24 kPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~~---g~~~v~~~~~~~~Gt~r~~~~~~~l--~-~~~~d~Vli~~ 95 (238)
T TIGR00466 24 KPMIVHVAENANESGADRCIVATD--DESVAQTCQKF---GIEVCMTSKHHNSGTERLAEVVEKL--A-LKDDERIVNLQ 95 (238)
T ss_pred cCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHHc---CCEEEEeCCCCCChhHHHHHHHHHh--C-CCCCCEEEEEc
Confidence 445555555444447999998754 34445555554 6543321 1222 12233222211 1 12578999999
Q ss_pred CCceeecCCcchHHHHHHhc
Q 037991 369 VDEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 369 aDEfL~p~~~~sI~d~L~~~ 388 (560)
+|+=+..+ ..|.++++..
T Consensus 96 gD~Pli~~--~~I~~li~~~ 113 (238)
T TIGR00466 96 GDEPFIPK--EIIRQVADNL 113 (238)
T ss_pred CCcCcCCH--HHHHHHHHHH
Confidence 99987754 4566666654
No 93
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.62 E-value=97 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceE
Q 037991 296 REWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNI 335 (560)
Q Consensus 296 ~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~V 335 (560)
.|+|+..+..|. .+++..|+++....++++.+.+.|..+
T Consensus 20 ~e~l~~L~~~g~-~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRERGK-PVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHTTS-EEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHcCC-CEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 677777776664 688888888888888888888778753
No 94
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=27.48 E-value=4.4e+02 Score=24.84 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecC
Q 037991 290 NQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDV 369 (560)
Q Consensus 290 NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDa 369 (560)
+....|...++... .++++++|..+.. . +.+.. .|..+.....++..+...++..++.. ...+|++++++
T Consensus 28 ~g~~ll~~~i~~l~-~~~~~i~vv~~~~---~-~~~~~---~~~~~v~~~~~~~~g~~~~i~~~l~~--~~~~~vlv~~~ 97 (193)
T PRK00317 28 NGKPLIQHVIERLA-PQVDEIVINANRN---L-ARYAA---FGLPVIPDSLADFPGPLAGILAGLKQ--ARTEWVLVVPC 97 (193)
T ss_pred CCEEHHHHHHHHHh-hhCCEEEEECCCC---h-HHHHh---cCCcEEeCCCCCCCCCHHHHHHHHHh--cCCCeEEEEcC
Confidence 34455555565544 5789999885422 2 22222 25433333333323334455555553 36799999999
Q ss_pred CceeecCCcchHHHHHHhc
Q 037991 370 DEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 370 DEfL~p~~~~sI~d~L~~~ 388 (560)
|-=+.. ...|..+++..
T Consensus 98 D~P~i~--~~~i~~l~~~~ 114 (193)
T PRK00317 98 DTPFIP--PDLVARLAQAA 114 (193)
T ss_pred CcCCCC--HHHHHHHHHhh
Confidence 995543 23466666644
No 95
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=27.12 E-value=2.2e+02 Score=27.94 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHc-cCCCcEEEEec
Q 037991 290 NQARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRA-RDVCNWVGFID 368 (560)
Q Consensus 290 NEa~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~-~~~~dWVlflD 368 (560)
+....|...|+.....|+++|+|..+ .+...+.+..+ |..+....-+..... .....++... ....++++.++
T Consensus 25 ~Gkpll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~~---~~~v~~~~~~~~~gt-~~~~~~~~~~~~~~~~~vlv~~ 98 (245)
T PRK05450 25 GGKPMIVRVYERASKAGADRVVVATD--DERIADAVEAF---GGEVVMTSPDHPSGT-DRIAEAAAKLGLADDDIVVNVQ 98 (245)
T ss_pred CCcCHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHHc---CCEEEECCCcCCCch-HHHHHHHHhcCCCCCCEEEEec
Confidence 33445555555555568999998654 34444444443 554433211111111 1122233322 12468999999
Q ss_pred CCc-eeecCCcchHHHHHHhc
Q 037991 369 VDE-FFRLPSGLILHDLIRNL 388 (560)
Q Consensus 369 aDE-fL~p~~~~sI~d~L~~~ 388 (560)
+|- ++.+ ..|.++++..
T Consensus 99 ~D~Pli~~---~~l~~li~~~ 116 (245)
T PRK05450 99 GDEPLIPP---EIIDQVAEPL 116 (245)
T ss_pred CCCCCCCH---HHHHHHHHHH
Confidence 998 5543 4566777654
No 96
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=26.18 E-value=4.6e+02 Score=27.26 Aligned_cols=97 Identities=19% Similarity=0.405 Sum_probs=50.5
Q ss_pred CCceEEEEEE-ecchHHHHHHHHHH---HhhcCccE-EEEEECCCCcCHHHHHH-Hhcc-CCceEEE----EeCCCcchH
Q 037991 278 KDHEMCICTM-LRNQARFIREWVMY---HARIGVQR-WFIYDNNSNDNIESVID-SLSS-EKFNITR----HVWPWIKTQ 346 (560)
Q Consensus 278 ~~~~lsVc~i-~~NEa~~L~EwIe~---h~~~Gvd~-f~IyDn~StD~T~eIL~-~y~~-~G~~Vt~----~~wp~~~~Q 346 (560)
.+++|++..+ ++.=..++..|+++ |...|.+- .||+.+ ....+-. .+.. ....|.. ..||...-.
T Consensus 32 ~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD----~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~ 107 (271)
T cd02515 32 QNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTD----KPAAVPEVELGPGRRLTVLKIAEESRWQDISMR 107 (271)
T ss_pred cCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeC----CcccCcccccCCCceeEEEEeccccCCcHHHHH
Confidence 4567776654 45555688888876 44567643 344433 2222111 1110 0112222 235543222
Q ss_pred HH-HHH-HHHHHccCCCcEEEEecCCceeecCCc
Q 037991 347 EA-GFA-HCALRARDVCNWVGFIDVDEFFRLPSG 378 (560)
Q Consensus 347 ~~-a~n-dCl~r~~~~~dWVlflDaDEfL~p~~~ 378 (560)
+. .+. ++..+...+.|+++++|+|-.+.-+-+
T Consensus 108 Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 108 RMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 11 222 222333569999999999998886655
No 97
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=26.11 E-value=2.3e+02 Score=26.39 Aligned_cols=91 Identities=10% Similarity=0.009 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhcc-CCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecC
Q 037991 291 QARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSS-EKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDV 369 (560)
Q Consensus 291 Ea~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~-~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDa 369 (560)
....|...++.....++++++|+.+... .++.+.+.+ .|..+.....+..+ ...++..++. .....+|++++++
T Consensus 24 g~pll~~~i~~l~~~~~~~iivv~~~~~---~~~~~~~~~~~~v~~v~~~~~~~g-~~~si~~~l~-~~~~~~~vlv~~~ 98 (188)
T TIGR03310 24 GKTILEHVVDNALRLFFDEVILVLGHEA---DELVALLANHSNITLVHNPQYAEG-QSSSIKLGLE-LPVQSDGYLFLLG 98 (188)
T ss_pred CeeHHHHHHHHHHHcCCCcEEEEeCCcH---HHHHHHhccCCCeEEEECcChhcC-HHHHHHHHhc-CCCCCCEEEEEeC
Confidence 3444444454444458999988766432 234444432 24432222211122 2233333332 2245789999999
Q ss_pred CceeecCCcchHHHHHHhc
Q 037991 370 DEFFRLPSGLILHDLIRNL 388 (560)
Q Consensus 370 DEfL~p~~~~sI~d~L~~~ 388 (560)
|--+.. ...|..+++..
T Consensus 99 D~P~i~--~~~i~~l~~~~ 115 (188)
T TIGR03310 99 DQPFVT--PDIIQLLLEAF 115 (188)
T ss_pred CcCCCC--HHHHHHHHHHH
Confidence 974432 23455665543
No 98
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.74 E-value=4.1e+02 Score=26.33 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=54.5
Q ss_pred EEecchHHHHHHHHHHHhhcCccEEEEEECCCC---------------cCHHHHHHHhccCCceEEEEe---CC--Ccch
Q 037991 286 TMLRNQARFIREWVMYHARIGVQRWFIYDNNSN---------------DNIESVIDSLSSEKFNITRHV---WP--WIKT 345 (560)
Q Consensus 286 ~i~~NEa~~L~EwIe~h~~~Gvd~f~IyDn~St---------------D~T~eIL~~y~~~G~~Vt~~~---wp--~~~~ 345 (560)
+++.|-.+.+.... ..|++.+.|++..|+ +...+.++...+.|..+.... +. ....
T Consensus 71 ~l~~~~~~~i~~a~----~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 71 ALVRNREKGIERAL----EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPE 146 (265)
T ss_pred EEccCchhhHHHHH----hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHH
Confidence 45566433343333 458999999998772 344455556666687654332 22 1111
Q ss_pred HHHHHHHHHHHccCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 346 QEAGFAHCALRARDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 346 Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
+...+-.-+.. ...+++-+.|....+.|.....+.+.+++
T Consensus 147 ~l~~~~~~~~~--~g~~~i~l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 147 YVLEVAKALEE--AGADEISLKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred HHHHHHHHHHH--cCCCEEEechhcCCcCHHHHHHHHHHHHH
Confidence 12222222222 47999999999999888654444444443
No 99
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=25.60 E-value=3.4e+02 Score=25.95 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCce
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEf 372 (560)
..|...|+.....|+++++|+-+...+...+.+....+.|..+....-+.......++ .++.. ...++++++.+|-
T Consensus 30 pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l-~~~~~--~~~~~~lv~~~D~- 105 (220)
T cd06426 30 PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL-SLLPE--KPTDPFLVMNGDI- 105 (220)
T ss_pred chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCccEEEEECCCCCcchHHH-HHHHh--hCCCCEEEEcCCE-
Confidence 4555555555556999999987643222222222211123333332211111222222 22333 2378899999994
Q ss_pred eecCCcchHHHHHHhc
Q 037991 373 FRLPSGLILHDLIRNL 388 (560)
Q Consensus 373 L~p~~~~sI~d~L~~~ 388 (560)
+... .+.++++.+
T Consensus 106 i~~~---~~~~l~~~~ 118 (220)
T cd06426 106 LTNL---NYEHLLDFH 118 (220)
T ss_pred eecc---CHHHHHHHH
Confidence 4432 455555543
No 100
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.31 E-value=5.5e+02 Score=25.19 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCC---------------cCHHHHHHHhccCCceEEEEeCCCcchHHH---HHHHHH
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSN---------------DNIESVIDSLSSEKFNITRHVWPWIKTQEA---GFAHCA 354 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~St---------------D~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~---a~ndCl 354 (560)
..+...++-....|++.+.+++.-|. +...+.++...+.|..|............. .+...+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEAL 146 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHH
Confidence 33444444334579999999998775 344455555556688765443322221111 222233
Q ss_pred HHccCCCcEEEEecCCceeecCCcchHHHHHHh
Q 037991 355 LRARDVCNWVGFIDVDEFFRLPSGLILHDLIRN 387 (560)
Q Consensus 355 ~r~~~~~dWVlflDaDEfL~p~~~~sI~d~L~~ 387 (560)
.. ...++|.+-|.--...|..-..+...+++
T Consensus 147 ~~--~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~ 177 (237)
T PF00682_consen 147 AE--AGADIIYLADTVGIMTPEDVAELVRALRE 177 (237)
T ss_dssp HH--HT-SEEEEEETTS-S-HHHHHHHHHHHHH
T ss_pred HH--cCCeEEEeeCccCCcCHHHHHHHHHHHHH
Confidence 33 38899999999999998765554444444
No 101
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=24.87 E-value=3.5e+02 Score=25.60 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCceeec
Q 037991 296 REWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEFFRL 375 (560)
Q Consensus 296 ~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEfL~p 375 (560)
...++-.+..++++++|+.+ .+...+.+..+ |..+.....+ .....+..++......++|++++-+|-=+..
T Consensus 34 ~~~l~~l~~~~~~~vvvv~~--~~~~~~~~~~~---~v~~i~~~~~---G~~~si~~al~~~~~~~~~vlv~~~D~P~l~ 105 (195)
T TIGR03552 34 RDVITALRGAGAGAVLVVSP--DPALLEAARNL---GAPVLRDPGP---GLNNALNAALAEAREPGGAVLILMADLPLLT 105 (195)
T ss_pred HHHHHHHHhcCCCCEEEECC--CHHHHHHHHhc---CCEEEecCCC---CHHHHHHHHHHHhhccCCeEEEEeCCCCCCC
Confidence 33344333445577777765 23333443333 6543322222 3344444444433335679999999976543
Q ss_pred CCcchHHHHHHhcC
Q 037991 376 PSGLILHDLIRNLS 389 (560)
Q Consensus 376 ~~~~sI~d~L~~~~ 389 (560)
...|.++++...
T Consensus 106 --~~~i~~l~~~~~ 117 (195)
T TIGR03552 106 --PRELKRLLAAAT 117 (195)
T ss_pred --HHHHHHHHHhcc
Confidence 345777777654
No 102
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=24.71 E-value=2.1e+02 Score=30.17 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=40.7
Q ss_pred eEEEE-EEecchHHHH---HHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCce
Q 037991 281 EMCIC-TMLRNQARFI---REWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFN 334 (560)
Q Consensus 281 ~lsVc-~i~~NEa~~L---~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~ 334 (560)
-|+-| ...+.....| .||+++.+..| ..++++.|||+-.-.+.++.+.+.|..
T Consensus 25 fifDcDGVlW~g~~~ipGs~e~l~~L~~~g-K~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 25 FIFDCDGVLWLGEKPIPGSPEALNLLKSLG-KQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred EEEcCCcceeecCCCCCChHHHHHHHHHcC-CcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 34444 2344455555 89999999889 899999999998888888888888875
No 103
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=24.36 E-value=2.5e+02 Score=30.47 Aligned_cols=90 Identities=8% Similarity=0.063 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCc
Q 037991 292 ARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDE 371 (560)
Q Consensus 292 a~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDE 371 (560)
...|...|+.....|+++++|+.....+...+.++.+. +..+..... ...+..++..++.......++++++|+|.
T Consensus 29 kpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~--~i~~v~~~~--~~G~~~sv~~~~~~l~~~~~~vlV~~~D~ 104 (450)
T PRK14360 29 KSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP--GLEFVEQQP--QLGTGHAVQQLLPVLKGFEGDLLVLNGDV 104 (450)
T ss_pred hhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC--CeEEEEeCC--cCCcHHHHHHHHHHhhccCCcEEEEeCCc
Confidence 35666666666667898888887754443333332221 222222222 12222233322222122356889999998
Q ss_pred -eeecCCcchHHHHHHhc
Q 037991 372 -FFRLPSGLILHDLIRNL 388 (560)
Q Consensus 372 -fL~p~~~~sI~d~L~~~ 388 (560)
++.+ ..|.++++..
T Consensus 105 P~i~~---~~l~~ll~~~ 119 (450)
T PRK14360 105 PLLRP---ETLEALLNTH 119 (450)
T ss_pred cccCH---HHHHHHHHHH
Confidence 4443 3456666544
No 104
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=4.7e+02 Score=28.24 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=42.8
Q ss_pred eeeeeeeecCCCccccCCCCCCceeEEEEEEcCCe-eccc-cccccCCCCCCCC-CCCCceEEEEEEecchHHHHHHHHH
Q 037991 224 SIGQEVGRCETPLSVLSGPHRDDFIKVSIRLKGKG-IFRT-VAHPVRLSGPEPP-AEKDHEMCICTMLRNQARFIREWVM 300 (560)
Q Consensus 224 s~~q~virC~~p~~i~~~~~~~~~i~VSi~~~~~~-~iP~-i~~~~~~~~~~~~-~~~~~~lsVc~i~~NEa~~L~EwIe 300 (560)
.++++...||.+..... +++.|.+....-. .+-. -+...+.-..+|. =..+++++|++-++|.+..|.-||.
T Consensus 97 ~t~~~l~~Cp~~~p~l~-----g~~~~~~~~~~~~e~v~~~~P~v~pGG~~~P~dC~ar~kvAIIIPfR~Re~HL~~~l~ 171 (372)
T KOG3916|consen 97 FTAQELPPCPEVSPILV-----GPILVNFSMPSLLELVQKENPEVRPGGRYRPEDCQARHKVAIIIPFRNREEHLRYLLH 171 (372)
T ss_pred cccccCCCCCCCCcccC-----CccceecccchHHHHHHhcCCCcCCCCCcCCCCCCccceeEEEeecccHHHHHHHHHH
Confidence 46688889999886653 3455555422100 0001 0111110011222 1367899999999999999999998
Q ss_pred HH
Q 037991 301 YH 302 (560)
Q Consensus 301 ~h 302 (560)
|.
T Consensus 172 ~L 173 (372)
T KOG3916|consen 172 HL 173 (372)
T ss_pred Hh
Confidence 74
No 105
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=22.46 E-value=2.2e+02 Score=30.96 Aligned_cols=89 Identities=10% Similarity=0.011 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCc-
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDE- 371 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDE- 371 (560)
..|...|+.....|+++++|+.+...+...+.+..+.. +..+.....+ .+.. .++..++.......++++++++|-
T Consensus 34 pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~G~~-~sl~~a~~~l~~~~~~~lv~~~D~P 110 (446)
T PRK14353 34 PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIAP-DAEIFVQKER-LGTA-HAVLAAREALAGGYGDVLVLYGDTP 110 (446)
T ss_pred hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccCC-CceEEEcCCC-CCcH-HHHHHHHHHHhccCCCEEEEeCCcc
Confidence 55555566655678999998887544444444433310 1111112122 1221 122222221111357899999998
Q ss_pred eeecCCcchHHHHHHh
Q 037991 372 FFRLPSGLILHDLIRN 387 (560)
Q Consensus 372 fL~p~~~~sI~d~L~~ 387 (560)
++.+ ..+.++++.
T Consensus 111 ~i~~---~~l~~l~~~ 123 (446)
T PRK14353 111 LITA---ETLARLRER 123 (446)
T ss_pred cCCH---HHHHHHHHh
Confidence 5543 345555553
No 106
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=22.42 E-value=2.7e+02 Score=25.91 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCc
Q 037991 292 ARFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDE 371 (560)
Q Consensus 292 a~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDE 371 (560)
...|...++... .++++++|..+.. . .+... ...|..+....-++......++..++... ..+|++++++|-
T Consensus 27 ~pll~~~l~~l~-~~~~~ivv~~~~~--~-~~~~~--~~~~~~~i~~~~~~~~g~~~si~~al~~~--~~~~vlv~~~D~ 98 (186)
T TIGR02665 27 KPLIEHVLARLR-PQVSDLAISANRN--P-ERYAQ--AGFGLPVVPDALADFPGPLAGILAGLRWA--GTDWVLTVPCDT 98 (186)
T ss_pred EEHHHHHHHHHH-hhCCEEEEEcCCC--H-HHHhh--ccCCCcEEecCCCCCCCCHHHHHHHHHhc--CCCeEEEEecCC
Confidence 344444444433 3688888876532 1 11111 11243332221234334444555555443 679999999998
Q ss_pred -eeecCCcchHHHHHHhc
Q 037991 372 -FFRLPSGLILHDLIRNL 388 (560)
Q Consensus 372 -fL~p~~~~sI~d~L~~~ 388 (560)
++.+ +.|..+++..
T Consensus 99 P~i~~---~~i~~l~~~~ 113 (186)
T TIGR02665 99 PFLPE---DLVARLAAAL 113 (186)
T ss_pred CcCCH---HHHHHHHHHh
Confidence 5544 3466666554
No 107
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.05 E-value=2.2e+02 Score=22.15 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCce
Q 037991 294 FIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFN 334 (560)
Q Consensus 294 ~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~ 334 (560)
.+.+.++..+..|.+.+.|-|.++..+..++.+...+.|..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 45677777777899999999999888877776655555654
No 108
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=21.30 E-value=3.2e+02 Score=26.32 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhc-CccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCC
Q 037991 292 ARFIREWVMYHARI-GVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVD 370 (560)
Q Consensus 292 a~~L~EwIe~h~~~-Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaD 370 (560)
...|...++..... ++++++|..+. +....+...+.... .+... ..+. .+..++..++... ...+|++++|+|
T Consensus 27 kpll~~~l~~l~~~~~~~~ivVv~~~--~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~sl~~~l~~~-~~~d~vlv~~~D 100 (217)
T TIGR00453 27 RPLLEHTLDAFLAHPAIDEVVVVVSP--EDQEFFQKYLVARA-VPKIV-AGGD-TRQDSVRNGLKAL-KDAEWVLVHDAA 100 (217)
T ss_pred eEHHHHHHHHHhcCCCCCEEEEEECh--HHHHHHHHHhhcCC-cEEEe-CCCc-hHHHHHHHHHHhC-CCCCEEEEccCc
Confidence 34454445544433 78999998762 22233333332111 12221 1222 2333444443322 257899999999
Q ss_pred ceeecCCcchHHHHHHhcC
Q 037991 371 EFFRLPSGLILHDLIRNLS 389 (560)
Q Consensus 371 EfL~p~~~~sI~d~L~~~~ 389 (560)
.=+.. ...|..+++...
T Consensus 101 ~P~i~--~~~i~~li~~~~ 117 (217)
T TIGR00453 101 RPFVP--KELLDRLLEALR 117 (217)
T ss_pred cCCCC--HHHHHHHHHHHh
Confidence 85443 245666666543
No 109
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=20.81 E-value=6.6e+02 Score=24.25 Aligned_cols=89 Identities=12% Similarity=-0.027 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCccEEEEEECCCCcCHHHHHHHhccCCceEEEEeCCCcchHHHHHHHHHHHccCCCcEEEEecCCce
Q 037991 293 RFIREWVMYHARIGVQRWFIYDNNSNDNIESVIDSLSSEKFNITRHVWPWIKTQEAGFAHCALRARDVCNWVGFIDVDEF 372 (560)
Q Consensus 293 ~~L~EwIe~h~~~Gvd~f~IyDn~StD~T~eIL~~y~~~G~~Vt~~~wp~~~~Q~~a~ndCl~r~~~~~dWVlflDaDEf 372 (560)
..|...|+.....|+++++|+.+...+...+.++...+.+..+....-+...+...++..++... ...++++ +.+|.+
T Consensus 32 ~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i-~~~~~li-~~~D~~ 109 (236)
T cd04189 32 PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFL-GDEPFVV-YLGDNL 109 (236)
T ss_pred chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhc-CCCCEEE-EECCee
Confidence 55555555555569999999987644444444443322233343322222222333333332221 2345544 778887
Q ss_pred eecCCcchHHHHHHh
Q 037991 373 FRLPSGLILHDLIRN 387 (560)
Q Consensus 373 L~p~~~~sI~d~L~~ 387 (560)
+.. .+.++++.
T Consensus 110 ~~~----~~~~~~~~ 120 (236)
T cd04189 110 IQE----GISPLVRD 120 (236)
T ss_pred cCc----CHHHHHHH
Confidence 643 35555544
Done!