BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037992
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 96/129 (74%), Gaps = 2/129 (1%)
Query: 1 SENAGQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSV 60
+ N GQD+YDVSLVDGFNLP+S+APQ P NVN VCP L VK +DGS V
Sbjct: 96 AANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSC-PANVNKVCPAPLQVKAADGS-V 153
Query: 61 IACKSACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGR 120
I+CKSACLA +YCCT TP+ CPPT+YS+IF+ QCPQAYSYAYDDK+STFTC+G
Sbjct: 154 ISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGG 213
Query: 121 PNYAITFCP 129
P+Y ITFCP
Sbjct: 214 PDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
Query: 4 AGQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIAC 63
GQDFYDVSLVDGFNLP+S+ PQ P NVNAVCP EL KGSDGS V+AC
Sbjct: 99 GGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASC-PANVNAVCPSELQKKGSDGS-VVAC 156
Query: 64 KSACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNY 123
SAC+ PQYCCT TP+ CPPT+YS+IF CP AYSYAYDDK TFTC G PNY
Sbjct: 157 LSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNY 216
Query: 124 AITFCP 129
AITFCP
Sbjct: 217 AITFCP 222
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 4 AGQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIAC 63
+G DF+D+SLVDGFN+P++ AP N+N CP EL V G C
Sbjct: 91 SGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPG-------GC 143
Query: 64 KSACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTC-TGRPN 122
+ C QYCCT C PT +SK FK +CP AYSY DD +STFTC G N
Sbjct: 144 NNPCTTFGGQQYCCT-----QGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTN 198
Query: 123 YAITFCP 129
Y + FCP
Sbjct: 199 YRVIFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 7 DFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACKSA 66
DF+D+SL+DGFN+P+S P +VNA CP EL G C +A
Sbjct: 94 DFFDISLIDGFNVPMSFLPDGGSGCSRGPRCA-VDVNARCPAELRQDG-------VCNNA 145
Query: 67 CLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAIT 126
C + +YCC G + C PT+YS+ FK QCP AYSY DD +STFTC NY +
Sbjct: 146 CPVFKKDEYCCVGS--AANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVV 203
Query: 127 FCP 129
FCP
Sbjct: 204 FCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 7 DFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACKSA 66
DF+D+SLVDGFN+P++ AP N+N CP L V G C +
Sbjct: 94 DFWDISLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALKVPG-------GCNNP 146
Query: 67 CLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTC-TGRPNYAI 125
C QYCCT C PT+ SK FK +CP AYSY DD +STFTC G NY +
Sbjct: 147 CTTFGGQQYCCT-----QGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRV 201
Query: 126 TFCP 129
FCP
Sbjct: 202 VFCP 205
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 7 DFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACKSA 66
DF+D+SLVDGFN+P+ +P ++N CP L G C +
Sbjct: 93 DFFDISLVDGFNVPMDFSPTSGGCRGIRCAA---DINGQCPGALKAPG-------GCNNP 142
Query: 67 CLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAIT 126
C QYCC C PTDYS+ FK CP AYSY DD+++TFTC G NY +
Sbjct: 143 CTVFKTDQYCCN-----SGACSPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVV 197
Query: 127 FCP 129
FCP
Sbjct: 198 FCP 200
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 7 DFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACKSA 66
DF+D+S++DGFN+P+S P N+N CP L V G C +
Sbjct: 95 DFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRVPG-------GCNNP 147
Query: 67 CLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGR-PNYAI 125
C QYCCT C PT+ S+ FK +CP AYSY DD +STFTCT +Y +
Sbjct: 148 CTTFGGQQYCCT-----QGPCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKV 202
Query: 126 TFCP 129
FCP
Sbjct: 203 MFCP 206
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 7 DFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACKSA 66
D+ D+SLVDGFN+P+ + ++N CP EL G C +
Sbjct: 93 DYIDISLVDGFNIPMDFS-------GCRGIQCSVDINGQCPSELKAPG-------GCNNP 138
Query: 67 CLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAIT 126
C +YCCT P C PT YSK FK +CP AYSY DDK+S FTC NY +T
Sbjct: 139 CTVFKTNEYCCTDG---PGSCGPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVT 195
Query: 127 FCP 129
FCP
Sbjct: 196 FCP 198
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P++ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+YS+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P++ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+YS+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P+ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+YS+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P+ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+YS+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P+ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMDFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+YS+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D+ D+S + GFN+P++ +P ++ CP +L G C
Sbjct: 96 GKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+ S+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEXSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 5 GQDFYDVSLVDGFNLPLSLAPQXXXXXXXXXXXXPQNVNAVCPLELAVKGSDGSSVIACK 64
G+D D+S + GFN+P++ +P ++ CP +L G C
Sbjct: 96 GKDXIDISNIKGFNVPMNFSPTTRGCRGVRCAA---DIVGQCPAKLKAPGG------GCN 146
Query: 65 SACLALNQPQYCCTGDFGTPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYA 124
AC +YCCT KC PT+ S+ FK CP A+SY DK +T TC G NY
Sbjct: 147 DACTVFQTSEYCCT-----TGKCGPTEXSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYR 200
Query: 125 ITFCP 129
+TFCP
Sbjct: 201 VTFCP 205
>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|B Chain B, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|C Chain C, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|D Chain D, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
Length = 381
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 93 SKIFKTQCPQAYSYAYDDKSSTFTCTGRPNY 123
KI + P + +DK+S FTC G+P Y
Sbjct: 115 GKISNLKSPASDQQLMEDKTSRFTCKGKPVY 145
>pdb|1I4U|A Chain A, The C1 Subunit Of Alpha-Crustacyanin
pdb|1I4U|B Chain B, The C1 Subunit Of Alpha-Crustacyanin
pdb|1OBQ|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBQ|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
Length = 181
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 80 DFGTPDKCPPTDYSKIFKTQCPQAYSYA 107
DF P KC D +K++ Q P SYA
Sbjct: 5 DFVVPGKCASVDRNKLWAEQTPNRNSYA 32
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 100 CPQAYSYAYDDKSSTF 115
CPQ YSY Y D +S+
Sbjct: 364 CPQIYSYIYSDGASSL 379
>pdb|3UI3|A Chain A, Structural And Biochemical Characterization Of Hp0315 From
Helicobacter Pylori As A Vapd Protein With An
Endoribonuclease Activity
pdb|3UI3|B Chain B, Structural And Biochemical Characterization Of Hp0315 From
Helicobacter Pylori As A Vapd Protein With An
Endoribonuclease Activity
Length = 160
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 105 SYAYDDKSSTFTCTGRPNYAITF 127
+ YDD + TFT T YA+ F
Sbjct: 42 EWTYDDATKTFTVTEGSXYALAF 64
>pdb|1H91|A Chain A, The Crystal Structure Of Lobster Apocrustacyanin A1 Using
Softer X-Rays.
pdb|1H91|B Chain B, The Crystal Structure Of Lobster Apocrustacyanin A1 Using
Softer X-Rays.
pdb|1GKA|A Chain A, The Molecular Basis Of The Coloration Mechanism In Lobster
Shell. Beta-Crustacyanin At 3.2 A Resolution
pdb|1S44|A Chain A, The Structure And Refinement Of Apocrustacyanin C2 To 1.6a
Resolution And The Search For Differences Between This
Protein And The Homologous Apoproteins A1 And C1.
pdb|1S44|B Chain B, The Structure And Refinement Of Apocrustacyanin C2 To 1.6a
Resolution And The Search For Differences Between This
Protein And The Homologous Apoproteins A1 And C1
Length = 180
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 80 DFGTPDKCPPTDYSKIFKTQCPQAYSYA 107
+F P KC D +K++ Q P SYA
Sbjct: 4 NFVVPGKCASVDRNKLWAEQTPNRNSYA 31
>pdb|1S2P|A Chain A, The Structure And Refinement Of Apocrustacyanin C2 To 1.3a
Resolution And The Search For Differences Between This
Protein And The Homologous Apoproteins A1 And C1
pdb|1S2P|B Chain B, The Structure And Refinement Of Apocrustacyanin C2 To 1.3a
Resolution And The Search For Differences Between This
Protein And The Homologous Apoproteins A1 And C1
Length = 181
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 80 DFGTPDKCPPTDYSKIFKTQCPQAYSYA 107
+F P KC D +K++ Q P SYA
Sbjct: 5 NFVVPGKCASVDRNKLWAEQTPNRNSYA 32
>pdb|1S6B|B Chain B, X-ray Crystal Structure Of A Complex Formed Between Two
Homologous Isoforms Of Phospholipase A2 From Naja Naja
Sagittifera: Principle Of Molecular Association And
Inactivation
pdb|1XXW|B Chain B, Structure Of Zinc Induced Heterodimer Of Two Calcium Free
Isoforms Of Phospholipase A2 From Naja Naja Sagittifera
At 2.7a Resolution
pdb|2RD4|B Chain B, Design Of Specific Inhibitors Of Phospholipase A2: Crystal
Structure Of The Complex Of Phospholipase A2 With
Pentapeptide Leu-Val-Phe-Phe-Ala At 2.9 A Resolution
Length = 119
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 75 YCCTGDFGTP----DKCPPTD---YSKIFK-TQC-PQAYSYAYDDKSSTFTCTGRPN 122
YC G GTP D+C Y++ K + C P+ +Y+Y+ + T TCTGR N
Sbjct: 27 YCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCNPRFRTYSYECTAGTLTCTGRNN 83
>pdb|1MH2|B Chain B, Crystal Structure Of A Zinc Containing Dimer Of
Phospholipase A2 From The Venom Of Indian Cobra (Naja
Naja Sagittifera)
Length = 119
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 75 YCCTGDFGTP----DKCPPTD---YSKIFK-TQC-PQAYSYAYDDKSSTFTCTGRPN 122
YC G GTP D+C T Y++ K + C P+ +Y+Y + T TCTGR N
Sbjct: 27 YCGRGGSGTPSDDLDRCCQTHDNCYNEAEKISGCNPRFRTYSYACTAGTLTCTGRNN 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,886
Number of Sequences: 62578
Number of extensions: 134729
Number of successful extensions: 340
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 32
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)