Query 037992
Match_columns 129
No_of_seqs 115 out of 672
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 6E-53 1.3E-57 332.0 10.4 123 4-128 97-219 (219)
2 smart00205 THN Thaumatin famil 100.0 3E-52 6.6E-57 327.9 10.4 124 3-129 95-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 3.1E-51 6.8E-56 323.8 9.5 120 5-129 100-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 2.9E-50 6.2E-55 315.5 5.6 123 3-129 91-213 (213)
5 cd09215 Thaumatin-like the swe 99.9 1E-23 2.2E-28 159.1 6.5 63 4-128 95-157 (157)
6 cd09217 TLP-P thaumatin and al 99.8 1.8E-19 4E-24 135.1 5.9 64 4-129 88-151 (151)
7 cd08961 GH64-TLP-SF glycoside 99.7 9E-18 2E-22 126.2 6.1 59 4-127 95-153 (153)
8 cd09214 GH64-like glycosyl hyd 74.8 2.9 6.2E-05 35.1 2.8 23 5-27 133-155 (319)
9 PF04681 Bys1: Blastomyces yea 74.2 4.4 9.5E-05 30.8 3.4 36 4-42 85-123 (155)
10 PF05991 NYN_YacP: YacP-like N 64.2 2.2 4.7E-05 32.1 -0.1 10 13-22 2-11 (166)
11 cd09220 GH64-GluB-like glycosi 63.5 7.5 0.00016 33.4 3.0 22 90-111 321-344 (369)
12 cd09216 GH64-LPHase-like glyco 62.6 7.5 0.00016 33.1 2.9 22 90-111 310-333 (353)
13 COG3688 Predicted RNA-binding 42.8 10 0.00022 29.2 0.6 10 10-19 4-13 (173)
14 cd09214 GH64-like glycosyl hyd 23.4 49 0.0011 27.8 1.5 23 90-112 276-300 (319)
15 TIGR00824 EIIA-man PTS system, 22.5 12 0.00027 26.2 -1.9 18 8-25 83-100 (116)
16 COG2454 Uncharacterized conser 22.0 17 0.00038 28.9 -1.3 15 12-26 69-83 (211)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=6e-53 Score=331.98 Aligned_cols=123 Identities=66% Similarity=1.310 Sum_probs=117.2
Q ss_pred CCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCCC
Q 037992 4 AGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFGT 83 (129)
Q Consensus 4 ~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~~ 83 (129)
+++|||||||||||||||.|+|.++ ...|+.++|.+|||+.||+||||++.+| .||||+|||++|++|||||||+|++
T Consensus 97 ~~~d~YdvSlVdGfNlP~~i~P~~~-~~~C~~~~C~~din~~CP~~L~v~~~~g-~vv~C~SaC~~f~~~~~CC~g~~~~ 174 (219)
T cd09218 97 GGQDFYDVSLVDGYNLPVSITPQGG-SGGCRTAGCVADLNAVCPAELQVKNSGG-RVVACKSACLAFNTDEYCCRGAYGT 174 (219)
T ss_pred CCCcceeeeeeccccCCEEEEecCC-CCCCCCCcccCcccccCCHHHeeccCCC-cEeeecCHHHhhCCccceecCCCCC
Confidence 5789999999999999999999864 4679999999999999999999997667 8999999999999999999999999
Q ss_pred CCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEcc
Q 037992 84 PDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITFC 128 (129)
Q Consensus 84 p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtFC 128 (129)
|++|+|+.||++||++||+||+|+|||++++|+|+++++|+|+||
T Consensus 175 p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 175 PETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred CCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999999999999999999999999999998899999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=3e-52 Score=327.86 Aligned_cols=124 Identities=62% Similarity=1.271 Sum_probs=117.1
Q ss_pred CCCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCC
Q 037992 3 NAGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFG 82 (129)
Q Consensus 3 ~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~ 82 (129)
.+++|||||||||||||||+|.|.++ ...|+.++|.+|||.+||+||||++ +| .||||+|||++|++|||||||+|+
T Consensus 95 ~~~~d~YdvSlVdGfNlP~~i~P~~~-~~~C~~~~C~~d~~~~CP~~L~v~~-~g-~vv~C~SaC~~f~~~~yCC~g~~~ 171 (218)
T smart00205 95 FGGLDFYDVSLVDGFNIPMSFTPTGG-SGDCKGAGCTADLNAQCPAELQVPG-GG-SVVACNSACTVFGTDQYCCTGGQN 171 (218)
T ss_pred CCCcceeeeEeeccccCCEEEEecCC-CCCcCCCcCCCcccccCCHHHcccc-CC-cccccccHhhccCCCcceecCCCC
Confidence 35789999999999999999999754 5679999999999999999999984 36 899999999999999999999999
Q ss_pred CCCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEccC
Q 037992 83 TPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITFCP 129 (129)
Q Consensus 83 ~p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtFCP 129 (129)
+|++|+|+.||++||++||+||+|++||++++|+|+++++|+|+|||
T Consensus 172 ~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 172 NPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999988999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=3.1e-51 Score=323.77 Aligned_cols=120 Identities=41% Similarity=0.905 Sum_probs=111.7
Q ss_pred CcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecC-CCCCccccccchhhh-cCC--CCccccCC
Q 037992 5 GQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKG-SDGSSVIACKSACLA-LNQ--PQYCCTGD 80 (129)
Q Consensus 5 ~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~-~~g~~vvaC~SaC~~-~~~--~~~CC~g~ 80 (129)
++|||||||||||||||.|.|. . .|+.++|.+|||.+||+||||+. ++| .||||||||++ |++ |||||||+
T Consensus 100 ~~D~YdVSlVDGfNlP~~i~P~---~-~C~~~~C~~dln~~CP~~L~v~~~~~g-~~vaC~SaC~a~~~~~~~~yCC~g~ 174 (229)
T cd09219 100 KEDNYDISLVDGFNIPLNITNN---I-TCPQPQCQVDLNVLCPALLRGPLDQKG-VNLGCISPCNRDKNHDDSPSCCTGS 174 (229)
T ss_pred CCceeEEEEecccccceEeccC---C-CCCCCcccCCCcccCCHHHccccCCCC-ccceecCHhhhhccCCCCcccccCC
Confidence 6799999999999999999993 3 79999999999999999999974 456 89999999999 655 99999999
Q ss_pred CCCCCCCCC--CchhHHHHhcCCCcccccCCCCC--CceeeCC--CCceEEEccC
Q 037992 81 FGTPDKCPP--TDYSKIFKTQCPQAYSYAYDDKS--STFTCTG--RPNYAITFCP 129 (129)
Q Consensus 81 ~~~p~~C~p--t~ys~~fK~~CP~AYsya~Dd~~--s~~tC~~--~~~y~VtFCP 129 (129)
|++|++|+| +.||++||++||+||||||||++ ++|+|++ +++|+|+|||
T Consensus 175 ~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 175 HNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred CCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999999999 88999999999999999999999 7899997 7899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=2.9e-50 Score=315.52 Aligned_cols=123 Identities=63% Similarity=1.286 Sum_probs=102.7
Q ss_pred CCCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCC
Q 037992 3 NAGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFG 82 (129)
Q Consensus 3 ~~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~ 82 (129)
.+++|||||||||||||||+|+|.+ ...|+.++|.+||+.+||.|||++..+ +||||+|+|.+|+++|+||||+|+
T Consensus 91 ~~~~d~YDVSlVdGfNlP~~i~p~~--~~~C~~~~C~~di~~~CP~~l~v~~~~--~vv~C~SaC~~~~~~~~CC~g~~~ 166 (213)
T PF00314_consen 91 SNGQDFYDVSLVDGFNLPMSISPSG--GSNCRSPGCPADINSWCPSELQVKNSD--GVVGCKSACDAFNTDEYCCRGAYN 166 (213)
T ss_dssp TTTEEEEEEESTT-BSS-EEEEESS--SSSSSSEEE-S-HHHHE-CCCEEETTS--STTEE--HHHHH-SHHHHTTCCS-
T ss_pred CCCcceEEEEeeeeecCChhhccCC--CCccccccCccccccccchhheeeccC--ceeeecccceeccCCccccccccC
Confidence 4679999999999999999999995 579999999999999999999998765 499999999999999999999999
Q ss_pred CCCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEccC
Q 037992 83 TPDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITFCP 129 (129)
Q Consensus 83 ~p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtFCP 129 (129)
+|++|+++.|+++||++||+||+|||||++++|+|+++++|+|+|||
T Consensus 167 ~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 167 TPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999999999999999999999999998999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=99.89 E-value=1e-23 Score=159.06 Aligned_cols=63 Identities=59% Similarity=1.292 Sum_probs=53.3
Q ss_pred CCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCCC
Q 037992 4 AGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFGT 83 (129)
Q Consensus 4 ~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~~ 83 (129)
+++|||||||||||||||.|.|.+ +.|+.++|.+
T Consensus 95 ~~~d~YdVSlVdG~NlP~~i~P~~---~~C~~~~C~~------------------------------------------- 128 (157)
T cd09215 95 GGLDYYDISLVDGYNLPMSITPQP---GECPTPICAA------------------------------------------- 128 (157)
T ss_pred CCcceeEEEeeccccCCEEEecCC---CCCCCCcccc-------------------------------------------
Confidence 568999999999999999999963 2343322221
Q ss_pred CCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEcc
Q 037992 84 PDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITFC 128 (129)
Q Consensus 84 p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtFC 128 (129)
||+||+|||||++++|+|+++++|+|+||
T Consensus 129 ----------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ----------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998899999998
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=99.78 E-value=1.8e-19 Score=135.11 Aligned_cols=64 Identities=58% Similarity=1.285 Sum_probs=52.1
Q ss_pred CCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCCC
Q 037992 4 AGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFGT 83 (129)
Q Consensus 4 ~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~~ 83 (129)
+++|||||||||||||||.|.|.+ ..|+.+ +|.+
T Consensus 88 ~~~d~YdISlVdG~NlP~~i~P~~---~~C~~~-------------------------~C~~------------------ 121 (151)
T cd09217 88 SGQDFYDISLVDGFNVPMDFSPTG---GGCHAI-------------------------PCAA------------------ 121 (151)
T ss_pred CCCccEEEEeecccccceEEecCC---CCCCCC-------------------------cCCC------------------
Confidence 367999999999999999999963 224322 2321
Q ss_pred CCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEccC
Q 037992 84 PDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITFCP 129 (129)
Q Consensus 84 p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtFCP 129 (129)
. ||+||+|+.| ..++|+|+.+++|+|+|||
T Consensus 122 ------d---------C~~ay~~~~D-~~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ------N---------CPDAYSYPKD-PTTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ------C---------CchHhcCCCC-CCceEeCCCCCCEEEEeCC
Confidence 1 9999999988 5799999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=99.72 E-value=9e-18 Score=126.25 Aligned_cols=59 Identities=56% Similarity=1.051 Sum_probs=49.1
Q ss_pred CCcceeeeecccccCCccEEEecCCCCCCCCCCCCcccccccCCccceecCCCCCccccccchhhhcCCCCccccCCCCC
Q 037992 4 AGQDFYDVSLVDGFNLPLSLAPQGGGSGNCSSTSCPQNVNAVCPLELAVKGSDGSSVIACKSACLALNQPQYCCTGDFGT 83 (129)
Q Consensus 4 ~~~d~YdVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dln~~CP~~l~v~~~~g~~vvaC~SaC~~~~~~~~CC~g~~~~ 83 (129)
+++|||||||||||||||.|+|..+ . | .|+.+
T Consensus 95 ~~~dfydISlVDGfNlP~~i~p~~~-~--------------------------g----~C~~~----------------- 126 (153)
T cd08961 95 NSGDFIDSSLVDGFNAPMTVGPRRG-D--------------------------G----TCLST----------------- 126 (153)
T ss_pred CCcceEEEEeecccCCCEEEEeccC-C--------------------------C----Ccccc-----------------
Confidence 4789999999999999999999642 1 1 13321
Q ss_pred CCCCCCCchhHHHHhcCCCcccccCCCCCCceeeCCCCceEEEc
Q 037992 84 PDKCPPTDYSKIFKTQCPQAYSYAYDDKSSTFTCTGRPNYAITF 127 (129)
Q Consensus 84 p~~C~pt~ys~~fK~~CP~AYsya~Dd~~s~~tC~~~~~y~VtF 127 (129)
. |||+|||||+.++|+|+++++|+|+|
T Consensus 127 -------~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 127 -------G----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -------c----------cccccCCCCccceEEcCCCCceEEeC
Confidence 1 89999999999999999999999998
No 8
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=74.76 E-value=2.9 Score=35.08 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.6
Q ss_pred CcceeeeecccccCCccEEEecC
Q 037992 5 GQDFYDVSLVDGFNLPLSLAPQG 27 (129)
Q Consensus 5 ~~d~YdVSlVdG~NlP~~i~p~~ 27 (129)
.+-|-++|.||-|.|||.|+-.+
T Consensus 133 ~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 133 TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred CceEecccceeeeccCeEEEEEc
Confidence 45678899999999999998654
No 9
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=74.16 E-value=4.4 Score=30.80 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=26.3
Q ss_pred CCcceeeeecccccC---CccEEEecCCCCCCCCCCCCcccc
Q 037992 4 AGQDFYDVSLVDGFN---LPLSLAPQGGGSGNCSSTSCPQNV 42 (129)
Q Consensus 4 ~~~d~YdVSlVdG~N---lP~~i~p~~g~~~~C~~~~C~~dl 42 (129)
+.+-|||+|-|+|.= -+|.|.|.+ ..|..+.|..-+
T Consensus 85 ~~~VwYDLSdvfGdPF~G~~v~v~ps~---~~Cp~I~Wp~Gv 123 (155)
T PF04681_consen 85 NNQVWYDLSDVFGDPFAGHKVTVNPSD---PSCPSIVWPNGV 123 (155)
T ss_pred CceEEEECccccCCCcCCCEEEEecCC---CCCCceECCCCc
Confidence 457899999999973 347788865 578777665543
No 10
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=64.21 E-value=2.2 Score=32.10 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=7.9
Q ss_pred cccccCCccE
Q 037992 13 LVDGFNLPLS 22 (129)
Q Consensus 13 lVdG~NlP~~ 22 (129)
|||||||=..
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 7999998554
No 11
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=63.49 E-value=7.5 Score=33.35 Aligned_cols=22 Identities=36% Similarity=0.856 Sum_probs=19.5
Q ss_pred CchhHHHHhcCC--CcccccCCCC
Q 037992 90 TDYSKIFKTQCP--QAYSYAYDDK 111 (129)
Q Consensus 90 t~ys~~fK~~CP--~AYsya~Dd~ 111 (129)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 569999999987 7899999996
No 12
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=62.63 E-value=7.5 Score=33.14 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.0
Q ss_pred CchhHHHHhcCC--CcccccCCCC
Q 037992 90 TDYSKIFKTQCP--QAYSYAYDDK 111 (129)
Q Consensus 90 t~ys~~fK~~CP--~AYsya~Dd~ 111 (129)
+.|++++++.-. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 468999999887 6899999995
No 13
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=42.77 E-value=10 Score=29.23 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=8.1
Q ss_pred eeecccccCC
Q 037992 10 DVSLVDGFNL 19 (129)
Q Consensus 10 dVSlVdG~Nl 19 (129)
.|=||||||+
T Consensus 4 ~iLLVDGYNm 13 (173)
T COG3688 4 RILLVDGYNM 13 (173)
T ss_pred eEEEeccchh
Confidence 4669999995
No 14
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=23.42 E-value=49 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=19.8
Q ss_pred CchhHHHHhcCC--CcccccCCCCC
Q 037992 90 TDYSKIFKTQCP--QAYSYAYDDKS 112 (129)
Q Consensus 90 t~ys~~fK~~CP--~AYsya~Dd~~ 112 (129)
+.|++++++.-. .||.|+|||-.
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV~ 300 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDVN 300 (319)
T ss_pred hHHHHHHHHhccCCCeeeccccccc
Confidence 569999999996 78999999853
No 15
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.51 E-value=12 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.8
Q ss_pred eeeeecccccCCccEEEe
Q 037992 8 FYDVSLVDGFNLPLSLAP 25 (129)
Q Consensus 8 ~YdVSlVdG~NlP~~i~p 25 (129)
..++-+|-|.||||.++-
T Consensus 83 ~~~~~vIsG~NLpmlle~ 100 (116)
T TIGR00824 83 KPHMDVIAGVNLPLLLET 100 (116)
T ss_pred cCCEEEEEecCHHHHHHH
Confidence 446889999999998864
No 16
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=22.00 E-value=17 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.2
Q ss_pred ecccccCCccEEEec
Q 037992 12 SLVDGFNLPLSLAPQ 26 (129)
Q Consensus 12 SlVdG~NlP~~i~p~ 26 (129)
=+||||||-++++.-
T Consensus 69 l~iDGyNvLItleSl 83 (211)
T COG2454 69 LVIDGYNVLITLESL 83 (211)
T ss_pred EEEechhhhhhHHHH
Confidence 369999999988753
Done!