BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037996
(535 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=MCH1 PE=3 SV=1
Length = 486
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 29/221 (13%)
Query: 286 CDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAI-DNLGQIGESLGYPTKTIKSF 344
CD P G + L+ + LF+ F +G +N+G I +++ SF
Sbjct: 255 CDGP--GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEMFQNNMGAILDTVTVENADSPSF 312
Query: 345 VSLVSIWNYFG---RVFAGFVSEGLLAKYKMPRPLMLTLV-LVLSCIGLLL---IAFPFP 397
+ VS++ F R+ GF SE + + + RP++L+++ LV +CI L++ I F
Sbjct: 313 STHVSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLLSVIALVAACIHLMVPSGIFTVFD 370
Query: 398 GSVY--VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSY---ILNVK 452
+ Y V +++ GFS+G+ L+ I+++++G+ T++ LA +GS +L K
Sbjct: 371 NAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFAK 430
Query: 453 VTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFII 493
V YD A E+ M++ +C GV CY L F+I
Sbjct: 431 V----YD--AASEVGVGSMSQ------VCSGVHCYGLTFVI 459
>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1
SV=1
Length = 547
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 39/192 (20%)
Query: 345 VSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFPG------ 398
V+L+S+ ++ GR+ +G +S+ L+ K+K R + + +L + I+ F
Sbjct: 368 VTLLSLLSFCGRLSSGPISDFLVKKFKAQRLWNIVIASLLVFLASNKISHDFSSIEDPSL 427
Query: 399 -------SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNV 451
++ V S I G+SFG +I+++ FG YSTL+ V
Sbjct: 428 RASKSFKNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLW--------------GV 473
Query: 452 KVTGSLYDHQAVKEL------AKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVS 505
TG ++ ++ A G + + K+ GV CY F++ F L
Sbjct: 474 LTTGGVFSVSVFTDILGRDFKANTGDDDGNCKK----GVLCYSYTFMVTKYCAAFNLL-- 527
Query: 506 FILVIRTREFYR 517
F+L I +YR
Sbjct: 528 FVLGIIGYTYYR 539
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1
Length = 489
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 11/213 (5%)
Query: 251 SEVTVEKPAEIEPKK--EPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLI 308
S V++E+ + + E P +P ++ D L+ + I +
Sbjct: 212 SVVSIERDVLLRKHEDGENTPLLTDPNQEHENN-----DDLVPNHKSKFLKFIKDISTYV 266
Query: 309 LFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLA 368
L + +G S I N+G + +++ P I V++ ++++ R+ G +S+ L+
Sbjct: 267 LLFSLLLSIGPSEMYITNMGSLVKAIT-PNSLISDQVAIHAVFSTLSRLSLGALSDFLVT 325
Query: 369 KYKMPRPLMLTLVLVLSCIGLLLIAFP--FPGSVYVASVIIGFSFGAQLPLIFAIISELF 426
Y++ R +L ++VL + IA Y+ S + GFS+G L +I ++
Sbjct: 326 NYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGGLFTLYPTVIFSIW 385
Query: 427 GLKYYSTLFNCGQLASPLGSYILNVKVTGSLYD 459
G + + + + +A +GS + V G +YD
Sbjct: 386 GPEIFGSAWGSFMIAPAIGSTTFGM-VFGLVYD 417
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 4 AGATYLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANVGVPSGLLGEITPTW--FVLLVG 61
AG+ LF ++ ++ L Y Q +N++G F +G + +P +LG + +L V
Sbjct: 42 AGSVLLFALFTPVLQHQLHYTQFQINIIGSFTSIGMYLPLP--VLGYLADCHGPVLLSVI 99
Query: 62 SGMNFA-GYLMIWLAVTGKIAKPAVWHMC-AYICIGANSQNFANTGALVTCVKNFPESRG 119
S + F+ GY LA T + W++ ++ IG + T AL+TC K +P+S+G
Sbjct: 100 SVLFFSPGYT---LAATVVQNDWSFWYLAISFGLIGCATSALYFT-ALLTCAKIYPKSKG 155
Query: 120 NMIGLLKGFTGLSGAILTQV 139
I GLS I ++V
Sbjct: 156 LTISAPVTCYGLSSLIGSRV 175
>sp|P37662|YHJX_ECOLI Inner membrane protein YhjX OS=Escherichia coli (strain K12)
GN=yhjX PE=1 SV=1
Length = 402
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 271 PDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNLGQI 330
D PK K+ +DYT+ +++ +L V S L I I
Sbjct: 187 KDAPKQEVKT------SNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI 240
Query: 331 GESLGY-PTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGL 389
+SL + + + V+++SI N GR+ G +S+ K+ R ++T+ V+S +G+
Sbjct: 241 AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSD------KIARIRVITIGQVISLVGM 294
Query: 390 LLIAF-PFPGSVYVASVI-IGFSFGAQLPLIFAIISELFGLK 429
+ F P + A++ + F+FG + + +++SE FGL
Sbjct: 295 AALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLN 336
>sp|Q4IM48|MCH1_GIBZE Probable transporter MCH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=MCH1 PE=3 SV=1
Length = 572
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 324 IDNLGQIGESL------GYPTKT-IKSFVSLVSIWNYFGRVFAGFVSE------------ 364
I+NLG I +L G+ +T + VS+ I N R+F G +++
Sbjct: 348 INNLGTIIGTLTPPEMEGWSHRTSAATHVSIFGITNTASRIFIGTLTDLLAPYPHTQHVQ 407
Query: 365 ------GLLAKYKMPRPLMLTLVLVLSCIGLLLIAF----PFPGSVYVASVIIGFSFGAQ 414
+ +++ + R + + IGLL++A ++ S ++G +GA
Sbjct: 408 GPSTRSAVSSRFSISRVAFMAFFASMLSIGLLILASGLVQNHAERFWLVSGLVGAGYGAI 467
Query: 415 LPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRS 474
L +++ ++G++ ++T + + GS + V + Y + A K +K G S
Sbjct: 468 FSLTPLMVTIIWGVENFATNYGLIGMLPAAGSTFWGL-VYSATYQNGANK--SKAGPEGS 524
Query: 475 DVKELICIGVKCY 487
D +L C G +CY
Sbjct: 525 DRDDLFCYGEQCY 537
>sp|Q4WVT3|MCH1_ASPFU Probable transporter mch1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mch1 PE=3
SV=1
Length = 619
Score = 35.8 bits (81), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 397 PGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGS 456
PG +V + +IG +G+ L+ IIS ++G++ + T + + G+ + V +
Sbjct: 506 PGLSHVTTALIGLGYGSAFSLVPIIISVVWGVENFGTNWGIVAMVPAAGAAMWGVIYSRG 565
Query: 457 LYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILAC-VTCFGALVSFILVIR 511
D A G N S + C G +CY F + C ++ + A+V++IL R
Sbjct: 566 YQD-------ATDGGNGSPDGQ--CHGWRCYG--FWAVGCTLSVWVAVVAWILAWR 610
>sp|A9GRA1|RL11_SORC5 50S ribosomal protein L11 OS=Sorangium cellulosum (strain So ce56)
GN=rplK PE=3 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 4.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 228 LFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEP 274
L +P+ I + + + + K PP+ V ++K A +E KK+P EP
Sbjct: 52 LIIPVVITVYSDRSFTFIMKTPPASVLLKKAAGLETKKKPGAGSKEP 98
>sp|D5AUZ7|CBIQ_RHOCB Cobalt transport protein CbiQ OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=cbiQ PE=1 SV=1
Length = 244
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 374 RPLMLTLVLVLSCIGLLLIAFPFPGSVYVASVIIGFSF-GAQLPLIFAIISELFGLKYYS 432
RPL ++ L + L + PFPG+V V I+ F+F GA++PL F + L + +
Sbjct: 18 RPLAEKCLIGLGFLALAVTVPPFPGAVLVTVAILAFTFLGARVPLRFWAAVAVLPLGFLT 77
Query: 433 T 433
T
Sbjct: 78 T 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,595,898
Number of Sequences: 539616
Number of extensions: 8615492
Number of successful extensions: 31706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 31677
Number of HSP's gapped (non-prelim): 75
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)