Query 037996
Match_columns 535
No_of_seqs 203 out of 2090
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 9E-32 3.1E-36 275.7 23.9 382 8-511 45-436 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.6E-30 1.2E-34 262.8 25.6 354 9-461 44-408 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.2E-29 4.1E-34 263.0 16.8 415 11-529 32-483 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.9 2.6E-26 8.8E-31 237.9 24.4 415 13-514 36-477 (491)
5 2gfp_A EMRD, multidrug resista 99.9 6.2E-27 2.1E-31 233.9 10.0 326 10-461 19-353 (375)
6 2cfq_A Lactose permease; trans 99.9 4.3E-24 1.5E-28 216.3 11.8 362 12-510 29-401 (417)
7 2xut_A Proton/peptide symporte 99.9 1.6E-22 5.4E-27 211.2 23.3 124 13-143 35-171 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 9.8E-14 3.4E-18 141.4 14.0 179 303-512 27-210 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 6E-13 2.1E-17 137.3 14.0 174 305-509 14-197 (491)
10 3o7q_A L-fucose-proton symport 99.4 5.6E-13 1.9E-17 135.2 13.0 129 323-458 45-177 (438)
11 2gfp_A EMRD, multidrug resista 99.3 1.2E-12 4.1E-17 130.0 7.2 158 323-511 19-177 (375)
12 2xut_A Proton/peptide symporte 99.2 2.8E-11 9.5E-16 125.9 12.3 172 304-506 12-196 (524)
13 4gc0_A D-xylose-proton symport 98.9 3.9E-09 1.3E-13 108.5 12.5 112 340-458 56-186 (491)
14 2cfq_A Lactose permease; trans 98.7 2.3E-09 8E-14 107.9 2.7 152 300-460 3-164 (417)
15 2g9p_A Antimicrobial peptide l 47.0 3.7 0.00013 21.0 -0.2 14 44-57 2-15 (26)
16 2knc_B Integrin beta-3; transm 36.7 65 0.0022 22.8 5.0 18 487-504 11-28 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9e-32 Score=275.72 Aligned_cols=382 Identities=14% Similarity=0.093 Sum_probs=255.3
Q ss_pred cccccccHHHHHHcCCChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 037996 8 YLFGTYSKDIKASLGYDQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVW 86 (535)
Q Consensus 8 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (535)
+.++.+.|.+.+++ .+..+.+++.+...++..+ .+++|+++||+|||++++++.++..++.++.++.... . ++++
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~ 120 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T--SSIA 120 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSS
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c--ccHH
Confidence 34556678888899 9999999987777777765 9999999999999999999999999998776551000 1 4678
Q ss_pred HHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 037996 87 HMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 87 ~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 165 (535)
.+++.|+++|++.+..++....++.|++| ++|++++|+...+.++|..+.+.+.+.+.....
T Consensus 121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g----------------- 183 (451)
T 1pw4_A 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN----------------- 183 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 89999999999999999999999999997 679999999988888887665433322221100
Q ss_pred HHhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhc
Q 037996 166 FVYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNL 245 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (535)
+++..+.....+.+... + ......++
T Consensus 184 ---------------~w~~~f~~~~~~~~~~~---~-----------------------------~~~~~~~~------- 209 (451)
T 1pw4_A 184 ---------------DWHAALYMPAFCAILVA---L-----------------------------FAFAMMRD------- 209 (451)
T ss_dssp ---------------CSTTCTHHHHHHHHHHH---H-----------------------------HHHHHCCC-------
T ss_pred ---------------cHHHHHHHHHHHHHHHH---H-----------------------------HHHhhccC-------
Confidence 02222221111000000 0 00000010
Q ss_pred CCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhc
Q 037996 246 KKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAID 325 (535)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 325 (535)
+|++....+ .++.++ +.++ + . +++.+++...++...++.+++|.+|...+..++.......+..
T Consensus 210 ---~~~~~~~~~---~~~~~~--~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 210 ---TPQSCGLPP---IEEYKN--DYPD----D-Y---NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp ---SSTTTCCCS---CTTTCC--C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CHhhcCCCC---hhhhcc--cccc----c-c---hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 0000 0 0 0000001111111246788899999888777666555555556
Q ss_pred chHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhh--hhccCCCchHHHHHHHHHHH-HHHHHHhcc---Ccc
Q 037996 326 NLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL--LAKYKMPRPLMLTLVLVLSC-IGLLLIAFP---FPG 398 (535)
Q Consensus 326 ~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~--~~~~~~~r~~~~~~~~~~~~-i~~~~~~~~---~~~ 398 (535)
+.+.+.++ +|+++.+++.+.++..++..+++++.|++.||+ ++| ..+..+..+.. ++.+++... +.+
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH------HHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 66777666 799999999999999999999999999999998 543 23333333333 555554433 334
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhh-HHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcc
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPL-GSYILNVKVTGSLYDHQAVKELAKKGMNRSDVK 477 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~ 477 (535)
...+..++.|++.+...+....++.|.+|++++++++|+.+....+ +..+ +|.+.|.+.|..+
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g--------------- 411 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA-ASAIVGYTVDFFG--------------- 411 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSC---------------
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC---------------
Confidence 4566677888888888888889999999999999999999999999 9977 9999999998743
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 478 ELICIGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 478 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|++.+++.+++.++.+++.++
T Consensus 412 ---------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ---------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999888888887766655443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=3.6e-30 Score=262.83 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=236.6
Q ss_pred ccccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 037996 9 LFGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWH 87 (535)
Q Consensus 9 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 87 (535)
.++.+.|.+++++|+|..+.+++.+...++.. ..+++|+++||+|||++++++.++..++.++.+.. ... ++++.
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~ 119 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--AEI--MNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc--ccc--ccHHH
Confidence 44567889999999999999998777777775 59999999999999999999999999997776322 222 56899
Q ss_pred HHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHH
Q 037996 88 MCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVY-GNDSKSLILLIGWLPAAISVI 165 (535)
Q Consensus 88 l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~ 165 (535)
+++.|+++|+|.+...+....++.|++| ++|++++++...+.++|..+.+.+...+. ......- .-..
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-------~~~~--- 189 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS-------QDVL--- 189 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC-------HHHH---
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cccc---
Confidence 9999999999999999999999999997 68999999999998888877654433333 1110000 0000
Q ss_pred HHhhhcccCCCCCC------cchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHH
Q 037996 166 FVYTIRIIPVVQHT------SHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREE 239 (535)
Q Consensus 166 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (535)
-..+++.... .+|+..+..... ...+. .+.. ...+
T Consensus 190 ----~~~~~~~~~~~~~~~~~~w~~~~~~~~~------~~~~~--------------------------~~~~-~~~~-- 230 (438)
T 3o7q_A 190 ----DKMSPEQLSAYKHSLVLSVQTPYMIIVA------IVLLV--------------------------ALLI-MLTK-- 230 (438)
T ss_dssp ----HHSCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH--------------------------HHHH-HHCC--
T ss_pred ----ccCCcchhhhhhhhhhhhHHHHHHHHHH------HHHHH--------------------------HHHH-HHHc--
Confidence 0000000000 001111110000 00000 0000 0000
Q ss_pred HhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhc
Q 037996 240 LAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGS 319 (535)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (535)
.|+.+++ .+ ++++++....+.++.+|+|.+|...+..++....
T Consensus 231 ---------~p~~~~~--------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 231 ---------FPALQSD--------------NH--------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp ---------CCCCTTT--------------CC--------------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred ---------CCccccc--------------cc--------------ccccccchhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 0110000 00 0000011123457788999999888777666555
Q ss_pred hhhhhcchHHH-Hhhc-CCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhccCc
Q 037996 320 SLTAIDNLGQI-GESL-GYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFPFP 397 (535)
Q Consensus 320 ~~~~~~~~~~~-~~~~-g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~ 397 (535)
......+.+.+ .++. |+++.+++...++..++..+++++.|+++||+++| ..+..+.++..++.+++...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------KVLAAYALIAMALCLISAFAGG 347 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHcCC
Confidence 54454555555 6655 99999999999999999999999999999999644 4555666666666655555444
Q ss_pred chHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 398 GSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 398 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
....+..++.|++.+...+...++..|.+|++ ++.+.++.. ...+++.+ +|.+.|++.|..
T Consensus 348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~g~l~~~~ 408 (438)
T 3o7q_A 348 HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHHHHHHHHh
Confidence 34455567888999988999999999999865 888888877 56688866 999999999883
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.2e-29 Score=263.05 Aligned_cols=415 Identities=13% Similarity=0.077 Sum_probs=252.4
Q ss_pred ccccHHHHHHcCC--------ChhhhHHHHHhhhhcccc-ccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcC--
Q 037996 11 GTYSKDIKASLGY--------DQSTLNLLGFFKDLGANV-GVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGK-- 79 (535)
Q Consensus 11 ~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~-- 79 (535)
+...|.++++++. ++.+.+++.+.+.++..+ ++++|+++||+|||++++++.+++.++.++++++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3456788887743 234577877888888865 89999999999999999999999999987764321110
Q ss_pred ---------CCChhHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcC---
Q 037996 80 ---------IAKPAVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGN--- 146 (535)
Q Consensus 80 ---------~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~--- 146 (535)
..+++++++++.|+++|+|.|...+.+..++.|+.| ++||+..++...+..+|..+...+.......
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 012579999999999999999999999999999997 6799999998888766665544333333221
Q ss_pred -----ChhHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhh
Q 037996 147 -----DSKSLILLIGWLPAAISVIFVYTIRIIPVVQH-TSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAAS 220 (535)
Q Consensus 147 -----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (535)
.+|++......+|.+..++..+..++.|+... +.++++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~-------------------------------- 239 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI-------------------------------- 239 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH--------------------------------
T ss_pred ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh--------------------------------
Confidence 23344444444454444443333332221100 0000000000
Q ss_pred hhHHHHHhhhhhhHhhhHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHh
Q 037996 221 ATGCIVLLFVPLAIAIREELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQA 300 (535)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (535)
.++...+...+ ++ ..+..+.. .+.+ +.......
T Consensus 240 ---------------l~~~~~~~~~~----~~-------------------------~~~~~~~~-~~~~--~~~~~~~~ 272 (491)
T 4gc0_A 240 ---------------LRKIMGNTLAT----QA-------------------------VQEIKHSL-DHGR--KTGGRLLM 272 (491)
T ss_dssp ---------------HHHHHHHHHHH----HH-------------------------HHHHHHHH-HHHH--HHTTHHHH
T ss_pred ---------------HHHhcCCchhH----HH-------------------------HHHHHHHH-Hhhh--hhhhHHHH
Confidence 00000000000 00 00000000 0000 00011222
Q ss_pred hhhHHHHHHH-HHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHH
Q 037996 301 LLSIDMLILF-VATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLT 379 (535)
Q Consensus 301 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 379 (535)
++.+...... ...+........+..+.+++.+..+.+..+......+.++...++.++++++.||+||| ..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr------~~~~ 346 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK------PLQI 346 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH------HHHH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc------chhc
Confidence 2333333332 23333344444555677777788887777777777788899999999999999999655 4444
Q ss_pred HHHHHHHHHHHHHhc---c-Cc-chHHHHHHHHHhhhc-chhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhH
Q 037996 380 LVLVLSCIGLLLIAF---P-FP-GSVYVASVIIGFSFG-AQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKV 453 (535)
Q Consensus 380 ~~~~~~~i~~~~~~~---~-~~-~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i 453 (535)
.+...+.++.+.+.. . .. ....+...+...+.+ ...++...+.+|.+|++.|+++.|+.+..+.+++++ ++.+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~ 425 (491)
T 4gc0_A 347 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWT 425 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTH
T ss_pred cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 555555554443321 1 22 222223333322222 233566789999999999999999999999999977 8888
Q ss_pred hHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhcccc
Q 037996 454 TGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTREFYRSDIYKKFRENAE 529 (535)
Q Consensus 454 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 529 (535)
.+.+.+...... ...+...|++.+++++++.++.+++.+|+|++..|++++.++++.+
T Consensus 426 ~p~l~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 426 FPMMDKNSWLVA------------------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHCHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHh------------------hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 877765432111 1125567888899999999888889999999988888886655433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=2.6e-26 Score=237.94 Aligned_cols=415 Identities=11% Similarity=0.020 Sum_probs=236.4
Q ss_pred ccHHHHHH-----cCCChhhhHHHHHhhhhcccc-ccchhhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH
Q 037996 13 YSKDIKAS-----LGYDQSTLNLLGFFKDLGANV-GVPSGLLGEI-TPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV 85 (535)
Q Consensus 13 ~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 85 (535)
..++++++ +|+|..+.+++.+...++..+ .+++|+++|| +|||+++.++.++..++.+++++ . +++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-----~--~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-----P--FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----C--CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----h--hhH
Confidence 34455666 999999999977777777754 9999999999 89999999999999988765532 2 457
Q ss_pred HHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CC--CcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037996 86 WHMCAYICIGANSQNFANTGALVTCVKNFP-ES--RGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAI 162 (535)
Q Consensus 86 ~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~--rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~ 162 (535)
+.+++.|+++|+|.+...+....++.|++| ++ |++++++...+..+|..+.+.+.+.+.+...|++.+....+..+.
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999996 56 677788787888888877666665555433333333333222222
Q ss_pred HHHHHhhhccc--CCC---CCCc-chhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhh
Q 037996 163 SVIFVYTIRII--PVV---QHTS-HEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAI 236 (535)
Q Consensus 163 ~~~~~~~~~~~--~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (535)
.++..+..... +++ +.+. ..++.-.....+. .........++. ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------~~l~~~~~~~~~-----~~ 239 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVS------------------------LAVAGFIAIIVV-----MN 239 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCC------------------------CCCHHHHHHHHH-----HH
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHHHHHHHH------------------------HHHHHHHHHHHH-----HH
Confidence 22222221111 100 0000 0000000000000 000000000000 00
Q ss_pred hHHHhhhhcCCCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhh
Q 037996 237 REELAIWNLKKQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGG 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (535)
.. +..+.+... . ..................+++.. .. .+..+....+..++..+..
T Consensus 240 ~~----------~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ 295 (491)
T 4aps_A 240 LV----------GWNSLPAYI-N---------LLTIVAIAIPVFYFAWMISSVKV-TS---TEHLRVVSYIPLFIAAVLF 295 (491)
T ss_dssp HH----------SSCCTTHHH-H---------HHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHH
T ss_pred hc----------cCcccccch-h---------hhhHHHHHHHHHHHHHHhhcccc-cH---HHHHHHHHHHHHHHHHHHH
Confidence 00 000000000 0 00000000000000000000000 00 0111112223333333322
Q ss_pred hhchhhhhcchHHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-
Q 037996 317 LGSSLTAIDNLGQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF- 394 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~- 394 (535)
+..........+.+.++ .+.+..+.+...++..+...++.++.|+++||++||+.. +...+..+.++..++.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
T 4aps_A 296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGLMFAGLSFLLMAIP 374 (491)
T ss_dssp HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHHHHHH
Confidence 22222233344444444 577667888888999999999999999999999887542 233344555555555444332
Q ss_pred ---------cCcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhH
Q 037996 395 ---------PFPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKE 465 (535)
Q Consensus 395 ---------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~ 465 (535)
.+.+...+..++.|++.+...+....++.|.+|++.++++.|+.+....+|..+ +|.+.+.+.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~~~~~~~----- 448 (491)
T 4aps_A 375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLVTLYNAK----- 448 (491)
T ss_dssp HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHGGGGGGS-----
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-----
Confidence 133456667788899888888888999999999999999999999999999977 99998887664
Q ss_pred hhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 037996 466 LAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRTRE 514 (535)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~~~ 514 (535)
++...|.+++++++++.++.+++.++.++
T Consensus 449 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 449 --------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp --------------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16677888888777777666655554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=6.2e-27 Score=233.85 Aligned_cols=326 Identities=14% Similarity=0.047 Sum_probs=223.5
Q ss_pred cccccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 037996 10 FGTYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAVWHM 88 (535)
Q Consensus 10 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 88 (535)
+....|.+.+++|.|..+.+++.+...++.. ..++.|+++||+|||+++.++.++..++.++.+++ ++++.+
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l 91 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLTVL 91 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHHHH
Confidence 4455678899999999999998777777775 49999999999999999999999999998777554 678999
Q ss_pred HHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 037996 89 CAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIFV 167 (535)
Q Consensus 89 ~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 167 (535)
++.|+++|++.+...+....++.|++| |+|++++++...+.++|..+.+.+...+.+...
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-------------------
Confidence 999999999999999999999999996 789999999998888887665433222211111
Q ss_pred hhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcCC
Q 037996 168 YTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLKK 247 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (535)
++..+.... +..++.. +.....
T Consensus 153 --------------~~~~~~~~~-------~~~~~~~-------------------------~~~~~~------------ 174 (375)
T 2gfp_A 153 --------------WRACYLFLL-------VLCAGVT-------------------------FSMARW------------ 174 (375)
T ss_dssp --------------HHHHHHHHH-------HHHHHHH-------------------------CCCCCS------------
T ss_pred --------------HHHHHHHHH-------HHHHHHH-------------------------HHHHHH------------
Confidence 111111000 0000000 000000
Q ss_pred CCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcch
Q 037996 248 QPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDNL 327 (535)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535)
-|+++++ + + ++++ ...+.++.+|+|+++...+..++.......+..+.
T Consensus 175 -~~~~~~~-------------~--~------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 175 -MPETRPV-------------D--A------------PRTR----LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp -SCCCSTT-------------T--C------------CCCC----TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CcccCCC-------------C--c------------cccc----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 0 0000 11123577889999888776665544444444444
Q ss_pred HHHHhh-cCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHH-HHHHHH--HHhc---cCcchH
Q 037996 328 GQIGES-LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVL-SCIGLL--LIAF---PFPGSV 400 (535)
Q Consensus 328 ~~~~~~-~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~~---~~~~~~ 400 (535)
+.+.++ .|.++.+++.+.+...++..+++++.+++.||+++ +.. .+... ...+.. .... .+.+..
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST------LMW--QSVICCLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------HHH--HHHHHHHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHhhhccccHHHH
Confidence 444444 78888889999999999999999999999999853 122 22221 111111 1111 133445
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQ 461 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~ 461 (535)
++..++.|++.+...+....++.|.+| +++|++.|+.+....++..+ +|.+.|.+.+..
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~ 353 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 567778889888888888999999998 89999999999999999977 999999987763
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=4.3e-24 Score=216.33 Aligned_cols=362 Identities=12% Similarity=0.039 Sum_probs=210.5
Q ss_pred cccHHHHHHcCCChhhhHHHHHhhhhccc-cccchhhhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHH
Q 037996 12 TYSKDIKASLGYDQSTLNLLGFFKDLGAN-VGVPSGLLGEITPTWFVLLVGSGMNFAGYLMIWLAVTGKIAKPAV-WHMC 89 (535)
Q Consensus 12 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~l~ 89 (535)
....++++++|+|..+.+++.+...++.. .++++|+++||+|||++++++.+++.++...... .... +.. ..+.
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~ 104 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI--FIFG--PLLQYNIL 104 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHH--HTHH--HHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHH
Confidence 33344677899999999997666666665 4999999999999999999988876553211110 0000 011 1234
Q ss_pred HHHHHhhcChhhHhhhhhhhHhhhcC---CCCcchhhhhHHhhhhhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037996 90 AYICIGANSQNFANTGALVTCVKNFP---ESRGNMIGLLKGFTGLSGAILTQVYLAVYGNDSKSLILLIGWLPAAISVIF 166 (535)
Q Consensus 90 ~~r~l~Gig~g~~~~~~~~~~~~~fp---~~rg~~~g~~~~~~~lg~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 166 (535)
..+++.|++.+..++.....+.++.+ ++|+.+.|.......+|..+.+.+.+.+.+.+
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~------------------- 165 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN------------------- 165 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 56777788877776666665666653 35688888876666677666543322221111
Q ss_pred HhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhhhhhhhHHHHHhhhhhhHhhhHHHhhhhcC
Q 037996 167 VYTIRIIPVVQHTSHEAKVFYHFLYASIVLALFLMVMTILEKVMSFPREAYAASATGCIVLLFVPLAIAIREELAIWNLK 246 (535)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (535)
++..+..... .. ....++ ....
T Consensus 166 ---------------~~~~f~~~~~----~~------------------------~~~~~~------~~~~--------- 187 (417)
T 2cfq_A 166 ---------------NQFVFWLGSG----CA------------------------LILAVL------LFFA--------- 187 (417)
T ss_dssp ---------------SHHHHTTTTT----TT------------------------TTHHHH------SCSS---------
T ss_pred ---------------hhHHHHHHHH----HH------------------------HHHHHH------HHHc---------
Confidence 1111110000 00 000000 0000
Q ss_pred CCCCCCcccCCcCccCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCcHHHhhhhHHHHHHHHHHHhhhhchhhhhcc
Q 037996 247 KQPPSEVTVEKPAEIEPKKEPLPPPDEPKGSTKSCFLTICDKPPRGEDYTILQALLSIDMLILFVATFGGLGSSLTAIDN 326 (535)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (535)
+|++++..+ ++ +.+ + .++++......++.+|+|++|...+..+........+..+
T Consensus 188 --~~~~~~~~~----~~-----~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2cfq_A 188 --KTDAPSSAT----VA-----NAV-------------G-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ 242 (417)
T ss_dssp --CCCCSCSSC----SS-----SSS-------------S-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --Ccccccccc----cc-----ccc-------------c-cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 000000000 00 000 0 0000001123467788898887665543332222222223
Q ss_pred hHHHHhh-cC---CCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 327 LGQIGES-LG---YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 327 ~~~~~~~-~g---~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
.+.+.++ ++ .+....+...++..++..++.++.|+++||+++| ..+..+.++.+++.+.+... +.+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK------NALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4434333 23 1233446667777788899999999999999654 34445556666655555443 334455
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHH-hhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCG-QLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELI 480 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~ 480 (535)
+...+.+++.+...+....++.|.+|++.+|++++.. +....+|+.+ +|.+.|++.|..+
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp~l~G~l~~~~g------------------ 377 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYESIG------------------ 377 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HTHHHHTHHHHSH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hhhhHHHHHHhcC------------------
Confidence 5555667666666666678999999999999999995 8888899977 9999999988643
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037996 481 CIGVKCYRLPFIILACVTCFGALVSFILVI 510 (535)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~ 510 (535)
|+..|.+++++.+++.++.+++.+
T Consensus 378 ------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 378 ------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 778888888888877766554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.90 E-value=1.6e-22 Score=211.21 Aligned_cols=124 Identities=7% Similarity=-0.076 Sum_probs=100.2
Q ss_pred ccHHHHHHcC------CChhhhHHHHHhhhhccc-cccchhhhcccc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCCh-
Q 037996 13 YSKDIKASLG------YDQSTLNLLGFFKDLGAN-VGVPSGLLGEIT-PTWFVLLVGSGMNFAGYLMIWLAVTGKIAKP- 83 (535)
Q Consensus 13 ~~~~l~~~~~------~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~- 83 (535)
..+.+.+++| ++..+.+++.+.+.++.. ..+++|+++||+ |||+++.++.++..++.++.+++ +
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 107 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EH 107 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SS
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cc
Confidence 3455778899 999999997777777775 489999999999 99999999999988887765432 3
Q ss_pred hHHHHHHHHHHhhcChhhHhhhhhhhHhhhcC-CCCcchhhh---hHHhhhhhHHHHHHHHHHH
Q 037996 84 AVWHMCAYICIGANSQNFANTGALVTCVKNFP-ESRGNMIGL---LKGFTGLSGAILTQVYLAV 143 (535)
Q Consensus 84 ~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~fp-~~rg~~~g~---~~~~~~lg~~i~~~~~~~~ 143 (535)
+++.+++.|++.|++.+...+....++.|++| ++|+++.+. ...+.++|..+.+.+.+.+
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999999997 578887776 6666777776655443333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=9.8e-14 Score=141.39 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhhhhchhhhhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHH
Q 037996 303 SIDMLILFVATFGGLGSSLTAIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVL 382 (535)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 382 (535)
.+.++..++..+........+....+.+.+++ .++.+.+++.++..++..++.+++|+++||+||| ..+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHHH
Confidence 34444444444443333333444567777788 8999999999999999999999999999999654 5666777
Q ss_pred HHHHHHHHHHhc----c-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhh
Q 037996 383 VLSCIGLLLIAF----P-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSL 457 (535)
Q Consensus 383 ~~~~i~~~~~~~----~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l 457 (535)
++.+++.++... . +.+.+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|..+ +|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777777776655 4 66788888999999999999999999999999999999999999999999977 99999888
Q ss_pred hhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 037996 458 YDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILVIRT 512 (535)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~~ 512 (535)
.+.. ++|+..|++.+++.++..++..+..++.
T Consensus 179 ~~~~-----------------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 179 MAWF-----------------------NDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHHT-----------------------CCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7652 2389999998888877666655554443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.44 E-value=6e-13 Score=137.30 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhhhchhhhh-cchHHHHhh-----cCCCCccchhhHHHHHHhhHHHHHHhhhhchh-hhhccCCCchHH
Q 037996 305 DMLILFVATFGGLGSSLTAI-DNLGQIGES-----LGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEG-LLAKYKMPRPLM 377 (535)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~ 377 (535)
.+|...+..++.....+... ...+++.+. +|.++.+.+++.+...++..++++++|+++|| +||| ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~~ 87 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------PA 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------HH
Confidence 44555544443333333332 334444445 89999999999999999999999999999999 8644 56
Q ss_pred HHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCc--ccchhhHHhhhhhhHHHHHhHhHh
Q 037996 378 LTLVLVLSCIGLLLIAFP-FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKY--YSTLFNCGQLASPLGSYILNVKVT 454 (535)
Q Consensus 378 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~p~i~ 454 (535)
+..+.++..++.+++... +.+.+++..++.|++.+...+...+++.|.+|+++ |+.+++..+....+|..+ +|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 677777777777776655 56778888999999999999999999999999988 778888888999999976 99999
Q ss_pred HhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 037996 455 GSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSFILV 509 (535)
Q Consensus 455 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~l~ 509 (535)
+.+.+..+ |+..|++.++..+++.++.++..
T Consensus 167 ~~l~~~~g------------------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 167 GAAQEAAG------------------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHSC------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh------------------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988643 99999988777776665554443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=5.6e-13 Score=135.24 Aligned_cols=129 Identities=19% Similarity=0.045 Sum_probs=111.8
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHH---hcc-Ccc
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLI---AFP-FPG 398 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~---~~~-~~~ 398 (535)
.....+.+.+++|.++.+.+++.+...++..++.+++|+++||+||| ..+..+.++.+++.++. ... +.+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYT 118 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44457778888999999999999999999999999999999999654 56667777777776665 443 567
Q ss_pred hHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 399 SVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 399 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
.+++..++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+ +|.+.+.+.
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999977 999999887
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.33 E-value=1.2e-12 Score=130.01 Aligned_cols=158 Identities=10% Similarity=0.083 Sum_probs=126.5
Q ss_pred hhcchHHHHhhcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 037996 323 AIDNLGQIGESLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAFP-FPGSVY 401 (535)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 401 (535)
+....+.+.+++|.++.+.++..+...++..++.++.|+++||++||+. +..+.++..++.+..... +.+.++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4445666778889999999999999999999999999999999987653 334555555555554443 566777
Q ss_pred HHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhhhhhhhhHhhhhcCCCCCcccccc
Q 037996 402 VASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLYDHQAVKELAKKGMNRSDVKELIC 481 (535)
Q Consensus 402 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (535)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..+
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------------------
Confidence 88889999999999999999999999999999999999999999977 9999999988644
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037996 482 IGVKCYRLPFIILACVTCFGALVSFILVIR 511 (535)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~~~l~~~l~~~ 511 (535)
|+..|.+.+++.++..++..+..+|
T Consensus 153 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 153 -----WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 8999988877776655534333333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.24 E-value=2.8e-11 Score=125.88 Aligned_cols=172 Identities=13% Similarity=0.114 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhhhhchhhhh-cchHHHHhhcC------CCCccchhhHHHHHHhhHHHHHHhhhhchhh-hhccCCCch
Q 037996 304 IDMLILFVATFGGLGSSLTAI-DNLGQIGESLG------YPTKTIKSFVSLVSIWNYFGRVFAGFVSEGL-LAKYKMPRP 375 (535)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g------~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~ 375 (535)
+.+|.+++..++.....+... ..++++.+++| +++.+++++.+...++..++.+++|+++||+ |+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------ 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------ 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 334555444443333333333 33445556678 9999999999999999999999999999999 865
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhH---HhhhhhhHHHHHh
Q 037996 376 LMLTLVLVLSCIGLLLIAFP--FPGSVYVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNC---GQLASPLGSYILN 450 (535)
Q Consensus 376 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~ig~~i~~ 450 (535)
..+..+.++..++.+++... +.+.+++..++.|++.+...+...+++.|.+|+++|++..+. .+....+|..+ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 34555666666666655543 456677888899999999999999999999999999876666 88888999976 9
Q ss_pred HhHhHhhhhhhhhhHhhhhcCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Q 037996 451 VKVTGSLYDHQAVKELAKKGMNRSDVKELICIGVKCYRLPFIILACVTCFGALVSF 506 (535)
Q Consensus 451 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~ 506 (535)
|.+.+.+.+..+ |+..|.+.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g------------------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG------------------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999998877533 89999888877766655443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.94 E-value=3.9e-09 Score=108.52 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=91.4
Q ss_pred cchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHHHHHHHHHHHHHHHHhc-------------------cCcchH
Q 037996 340 TIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLMLTLVLVLSCIGLLLIAF-------------------PFPGSV 400 (535)
Q Consensus 340 ~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~ 400 (535)
..+++.+.+.++.++|.+++|+++||+||| ..+.++.++..++.++.+. .+.+.+
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 356778888999999999999999999554 6677777777777666542 245568
Q ss_pred HHHHHHHHhhhcchhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHHhHhHhHhhh
Q 037996 401 YVASVIIGFSFGAQLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYILNVKVTGSLY 458 (535)
Q Consensus 401 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~p~i~g~l~ 458 (535)
++..++.|++.|...+..+.++.|..|+++|+...++......+|.++ ++.+.....
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~ 186 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhc
Confidence 889999999999999999999999999999999999999988888855 655544443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.75 E-value=2.3e-09 Score=107.88 Aligned_cols=152 Identities=12% Similarity=0.112 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHHhhhhchhhhhcchHHHHh-hcCCCCccchhhHHHHHHhhHHHHHHhhhhchhhhhccCCCchHHH
Q 037996 300 ALLSIDMLILFVATFGGLGSSLTAIDNLGQIGE-SLGYPTKTIKSFVSLVSIWNYFGRVFAGFVSEGLLAKYKMPRPLML 378 (535)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 378 (535)
.+|+|++|......+.............+.+.+ +.|+++.+.+++.+...++..++++++|+++||+|||+ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~------~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------HH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HH
Confidence 578899998877665544433334445555444 57999999999999999999999999999999998764 22
Q ss_pred HHHHHHHHH---HHHHHhccC--cchHHHHHHHHHhhhcc----hhhHHHHHHHHhhccCcccchhhHHhhhhhhHHHHH
Q 037996 379 TLVLVLSCI---GLLLIAFPF--PGSVYVASVIIGFSFGA----QLPLIFAIISELFGLKYYSTLFNCGQLASPLGSYIL 449 (535)
Q Consensus 379 ~~~~~~~~i---~~~~~~~~~--~~~~~~~~~l~g~~~g~----~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~ 449 (535)
..+..+..+ ......... .........+.+++.+. ..+....+..+. +++++..+|.......+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 333332222 111111110 01112222232333332 233333333332 246788888888888888866
Q ss_pred hHhHhHhhhhh
Q 037996 450 NVKVTGSLYDH 460 (535)
Q Consensus 450 ~p~i~g~l~~~ 460 (535)
+|.+.+++.+.
T Consensus 154 ~~~l~~~l~~~ 164 (417)
T 2cfq_A 154 GASIVGIMFTI 164 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=47.01 E-value=3.7 Score=20.95 Aligned_cols=14 Identities=14% Similarity=-0.204 Sum_probs=11.4
Q ss_pred chhhhcccccchHH
Q 037996 44 PSGLLGEITPTWFV 57 (535)
Q Consensus 44 ~~G~l~Dr~G~r~~ 57 (535)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999998865
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.67 E-value=65 Score=22.83 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHHHHHHH
Q 037996 487 YRLPFIILACVTCFGALV 504 (535)
Q Consensus 487 ~~~~f~~~~~~~~~~~~l 504 (535)
+.....+.+++.++++++
T Consensus 11 ~~Iv~gvi~gilliGlll 28 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAA 28 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 333344555555555443
Done!