Query 037998
Match_columns 348
No_of_seqs 236 out of 1497
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.7E-33 1.6E-37 228.3 8.4 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.3E-32 4.5E-37 234.8 8.5 114 14-128 2-115 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.8E-32 6.1E-37 226.5 7.6 104 14-118 1-104 (107)
4 3osg_A MYB21; transcription-DN 100.0 7.6E-32 2.6E-36 228.8 9.0 106 8-115 5-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 5.6E-32 1.9E-36 229.6 7.2 108 8-116 21-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.6E-32 1.2E-36 238.4 2.0 127 11-138 3-130 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 8E-30 2.7E-34 223.4 6.8 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 3.9E-23 1.3E-27 175.2 2.4 100 40-140 1-101 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.9E-21 1.3E-25 147.6 1.3 67 8-75 3-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.7 1.3E-17 4.3E-22 130.1 4.6 58 53-111 9-66 (73)
11 2cu7_A KIAA1915 protein; nucle 99.7 5.4E-17 1.9E-21 125.2 7.3 65 61-126 3-67 (72)
12 2dim_A Cell division cycle 5-l 99.7 2.2E-17 7.4E-22 126.6 4.9 65 62-126 4-69 (70)
13 2juh_A Telomere binding protei 99.7 8E-18 2.7E-22 142.8 2.5 83 9-91 12-103 (121)
14 1ign_A Protein (RAP1); RAP1,ye 99.7 3.2E-17 1.1E-21 152.8 6.6 105 10-115 4-200 (246)
15 2din_A Cell division cycle 5-l 99.7 9.3E-17 3.2E-21 121.8 7.3 61 60-121 2-62 (66)
16 2roh_A RTBP1, telomere binding 99.6 5.6E-17 1.9E-21 137.8 3.4 79 10-88 27-114 (122)
17 2d9a_A B-MYB, MYB-related prot 99.6 1.1E-16 3.8E-21 119.1 2.4 57 9-66 3-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.6 1.2E-16 4E-21 115.7 2.2 52 12-64 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.6 3.6E-16 1.2E-20 116.3 4.1 55 62-116 3-58 (60)
20 1ity_A TRF1; helix-turn-helix, 99.6 1.4E-15 4.8E-20 116.3 6.4 63 60-122 3-68 (69)
21 1ity_A TRF1; helix-turn-helix, 99.6 2E-16 6.9E-21 121.0 1.6 63 9-71 5-68 (69)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.3E-15 4.5E-20 110.0 5.4 50 65-114 1-51 (52)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 2.1E-16 7.2E-21 114.3 1.2 52 12-64 1-52 (52)
24 1gvd_A MYB proto-oncogene prot 99.6 2.3E-15 7.8E-20 108.9 5.1 50 65-114 1-51 (52)
25 3osg_A MYB21; transcription-DN 99.6 9.5E-16 3.3E-20 129.7 3.2 100 62-175 6-105 (126)
26 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.4E-15 4.9E-20 125.1 3.0 72 67-138 1-73 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 99.5 9.6E-16 3.3E-20 125.2 2.0 75 64-138 1-76 (105)
28 1w0t_A Telomeric repeat bindin 99.5 6.4E-15 2.2E-19 107.2 5.7 49 66-114 1-52 (53)
29 3sjm_A Telomeric repeat-bindin 99.5 9.9E-16 3.4E-20 116.3 0.9 57 10-66 7-64 (64)
30 1x41_A Transcriptional adaptor 99.5 9.8E-15 3.4E-19 108.9 6.1 52 62-113 3-55 (60)
31 2yum_A ZZZ3 protein, zinc fing 99.5 9.2E-15 3.1E-19 113.2 5.0 59 62-120 3-67 (75)
32 3zqc_A MYB3; transcription-DNA 99.5 1.9E-15 6.5E-20 128.5 0.3 100 67-180 2-102 (131)
33 3sjm_A Telomeric repeat-bindin 99.5 2.5E-14 8.4E-19 108.6 5.8 52 65-116 9-63 (64)
34 1x41_A Transcriptional adaptor 99.5 5E-15 1.7E-19 110.5 1.5 54 10-64 4-57 (60)
35 1w0t_A Telomeric repeat bindin 99.5 4.4E-15 1.5E-19 108.0 0.9 50 13-62 1-51 (53)
36 2elk_A SPCC24B10.08C protein; 99.5 7.1E-14 2.4E-18 103.7 6.4 50 63-112 5-56 (58)
37 2din_A Cell division cycle 5-l 99.4 4.3E-15 1.5E-19 112.5 -1.1 58 8-68 3-60 (66)
38 2elk_A SPCC24B10.08C protein; 99.4 1.1E-14 3.9E-19 108.0 1.2 51 11-61 6-56 (58)
39 2ltp_A Nuclear receptor corepr 99.2 7.7E-15 2.6E-19 117.9 0.0 56 60-115 9-64 (89)
40 2yum_A ZZZ3 protein, zinc fing 99.4 1.6E-14 5.6E-19 111.8 0.2 60 9-69 3-67 (75)
41 2cu7_A KIAA1915 protein; nucle 99.4 6.7E-14 2.3E-18 107.9 0.4 58 8-67 3-60 (72)
42 2aje_A Telomere repeat-binding 99.3 2.4E-13 8.1E-18 112.8 3.1 79 9-87 8-95 (105)
43 2ckx_A NGTRF1, telomere bindin 99.3 3.5E-13 1.2E-17 107.4 3.4 69 15-84 1-79 (83)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1E-12 3.5E-17 102.3 5.8 52 62-113 13-68 (73)
45 2llk_A Cyclin-D-binding MYB-li 99.3 6E-13 2E-17 103.7 2.2 57 8-68 17-73 (73)
46 2yus_A SWI/SNF-related matrix- 99.3 2.1E-12 7.3E-17 101.8 4.6 48 64-111 15-62 (79)
47 2juh_A Telomere binding protei 99.3 8.6E-13 2.9E-17 111.9 1.7 56 61-116 11-71 (121)
48 1ign_A Protein (RAP1); RAP1,ye 99.2 2.6E-12 9E-17 119.9 3.7 67 63-130 4-76 (246)
49 2ckx_A NGTRF1, telomere bindin 99.2 1.2E-11 4.1E-16 98.5 6.9 50 68-117 1-55 (83)
50 2cjj_A Radialis; plant develop 99.2 1.9E-11 6.4E-16 99.3 7.5 60 66-125 7-71 (93)
51 2yus_A SWI/SNF-related matrix- 99.2 3.7E-12 1.3E-16 100.4 3.2 53 7-61 11-63 (79)
52 2aje_A Telomere repeat-binding 99.2 2.1E-11 7.3E-16 101.0 6.2 53 63-115 9-66 (105)
53 2ltp_A Nuclear receptor corepr 98.8 2.9E-12 1E-16 102.8 0.0 54 8-63 10-63 (89)
54 2roh_A RTBP1, telomere binding 99.1 1.6E-11 5.4E-16 104.3 4.0 54 63-116 27-85 (122)
55 1x58_A Hypothetical protein 49 99.1 5.4E-11 1.8E-15 89.9 6.0 49 66-114 7-58 (62)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.7E-11 5.7E-16 95.5 1.0 55 7-62 11-68 (73)
57 3hm5_A DNA methyltransferase 1 98.9 2.3E-09 7.9E-14 87.1 6.6 67 50-120 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 2.9E-09 1E-13 79.6 6.3 47 66-112 11-57 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.8E-09 6.3E-14 83.7 5.1 59 64-123 5-67 (72)
60 2cjj_A Radialis; plant develop 98.7 1.4E-09 4.7E-14 88.3 -0.1 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.6 2.2E-08 7.5E-13 92.9 5.7 49 66-114 132-180 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.5 2.5E-08 8.6E-13 74.4 2.3 52 8-61 6-57 (61)
63 1x58_A Hypothetical protein 49 98.5 1.5E-08 5.2E-13 76.5 1.0 50 12-63 6-58 (62)
64 1fex_A TRF2-interacting telome 98.4 2.9E-07 1E-11 68.6 4.7 47 67-113 2-58 (59)
65 1wgx_A KIAA1903 protein; MYB D 98.4 2.9E-07 9.9E-12 71.6 4.6 46 67-112 8-57 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.3 5.5E-08 1.9E-12 75.3 -0.1 52 10-63 4-58 (72)
67 2xag_B REST corepressor 1; ami 98.3 2.3E-07 8E-12 94.2 4.4 45 68-112 381-425 (482)
68 1fex_A TRF2-interacting telome 98.2 3E-07 1E-11 68.6 0.4 48 14-62 2-58 (59)
69 2yqk_A Arginine-glutamic acid 98.0 1.4E-05 4.7E-10 60.0 6.5 50 62-111 4-54 (63)
70 2iw5_B Protein corest, REST co 98.0 1.7E-06 5.9E-11 80.3 1.8 49 12-62 131-179 (235)
71 1ug2_A 2610100B20RIK gene prod 97.9 1.4E-05 4.8E-10 64.5 5.5 46 69-114 35-83 (95)
72 1wgx_A KIAA1903 protein; MYB D 97.9 2.2E-06 7.4E-11 66.7 0.5 49 14-63 8-59 (73)
73 4eef_G F-HB80.4, designed hema 97.8 4.9E-06 1.7E-10 64.7 1.1 43 67-109 20-66 (74)
74 4iej_A DNA methyltransferase 1 97.7 0.0001 3.5E-09 59.7 7.5 61 56-120 23-88 (93)
75 2lr8_A CAsp8-associated protei 96.8 6.1E-06 2.1E-10 63.3 0.0 44 69-113 16-62 (70)
76 1ofc_X ISWI protein; nuclear p 97.5 0.00021 7.1E-09 69.0 7.9 100 15-115 111-276 (304)
77 4a69_C Nuclear receptor corepr 97.4 0.00021 7.3E-09 57.6 5.6 45 67-111 43-87 (94)
78 2crg_A Metastasis associated p 97.4 0.00029 9.8E-09 53.9 6.0 44 67-110 8-52 (70)
79 4eef_G F-HB80.4, designed hema 97.3 4.9E-05 1.7E-09 59.1 0.4 44 14-58 20-66 (74)
80 2ebi_A DNA binding protein GT- 97.2 0.00038 1.3E-08 54.6 4.8 48 67-114 4-65 (86)
81 2yqk_A Arginine-glutamic acid 97.2 0.00016 5.5E-09 54.1 2.4 50 8-59 3-53 (63)
82 2xag_B REST corepressor 1; ami 97.0 0.00022 7.5E-09 72.6 1.8 48 12-61 378-425 (482)
83 3hm5_A DNA methyltransferase 1 96.7 0.00039 1.3E-08 56.3 1.2 49 12-61 28-80 (93)
84 2ebi_A DNA binding protein GT- 96.4 0.00026 8.8E-09 55.5 -1.9 49 13-61 3-63 (86)
85 2lr8_A CAsp8-associated protei 95.1 0.00086 2.9E-08 51.4 0.0 46 15-62 15-62 (70)
86 4a69_C Nuclear receptor corepr 96.0 0.0016 5.4E-08 52.5 1.1 43 14-58 43-85 (94)
87 2crg_A Metastasis associated p 96.0 0.0018 6.2E-08 49.4 1.2 45 13-59 7-52 (70)
88 1ug2_A 2610100B20RIK gene prod 96.0 0.001 3.5E-08 53.7 -0.4 44 16-60 35-80 (95)
89 2y9y_A Imitation switch protei 95.6 0.035 1.2E-06 54.9 8.9 103 15-117 124-294 (374)
90 4b4c_A Chromodomain-helicase-D 95.1 0.017 5.9E-07 51.6 4.4 38 5-42 125-162 (211)
91 1irz_A ARR10-B; helix-turn-hel 94.8 0.08 2.7E-06 40.0 6.6 48 66-113 6-58 (64)
92 1ofc_X ISWI protein; nuclear p 93.7 0.45 1.5E-05 45.8 11.0 47 67-113 110-157 (304)
93 4iej_A DNA methyltransferase 1 91.9 0.047 1.6E-06 44.1 1.2 48 12-60 28-79 (93)
94 4b4c_A Chromodomain-helicase-D 91.3 0.31 1E-05 43.3 6.0 50 66-115 6-60 (211)
95 2xb0_X Chromo domain-containin 90.1 0.24 8.1E-06 46.9 4.3 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 84.6 0.32 1.1E-05 36.7 1.3 47 11-57 4-53 (64)
97 2xb0_X Chromo domain-containin 72.9 7.4 0.00025 36.7 6.9 48 67-114 3-55 (270)
98 2rq5_A Protein jumonji; develo 62.8 24 0.00083 29.2 7.3 77 13-115 6-97 (121)
99 1u78_A TC3 transposase, transp 61.8 27 0.00094 27.5 7.4 86 15-106 5-98 (141)
100 2y9y_A Imitation switch protei 57.2 16 0.00053 36.1 6.0 45 67-111 123-169 (374)
101 2rq5_A Protein jumonji; develo 55.7 2.5 8.4E-05 35.3 0.0 57 24-83 46-113 (121)
102 2o8x_A Probable RNA polymerase 53.6 21 0.0007 24.9 4.8 43 70-114 16-58 (70)
103 1ku3_A Sigma factor SIGA; heli 48.7 27 0.00092 25.1 4.8 44 70-115 11-58 (73)
104 2lm1_A Lysine-specific demethy 46.8 32 0.0011 27.2 5.4 39 77-115 48-98 (107)
105 2li6_A SWI/SNF chromatin-remod 45.9 14 0.00049 30.0 3.2 38 77-114 53-98 (116)
106 2jrz_A Histone demethylase jar 43.8 30 0.001 28.1 4.8 39 77-115 44-94 (117)
107 2k27_A Paired box protein PAX- 42.6 98 0.0033 25.2 8.0 78 14-96 23-111 (159)
108 1kkx_A Transcription regulator 42.2 21 0.00071 29.5 3.6 40 78-117 53-100 (123)
109 2li6_A SWI/SNF chromatin-remod 41.6 4 0.00014 33.4 -0.9 39 24-63 53-98 (116)
110 1k78_A Paired box protein PAX5 41.6 42 0.0014 27.1 5.4 78 14-96 30-118 (149)
111 2cxy_A BAF250B subunit, HBAF25 41.1 37 0.0013 27.8 5.0 39 77-115 55-105 (125)
112 2p7v_B Sigma-70, RNA polymeras 41.1 27 0.00093 24.7 3.7 40 74-114 9-52 (68)
113 2eqy_A RBP2 like, jumonji, at 39.1 41 0.0014 27.5 5.0 39 77-115 46-96 (122)
114 3hug_A RNA polymerase sigma fa 38.4 44 0.0015 25.0 4.8 47 74-121 41-90 (92)
115 1x3u_A Transcriptional regulat 36.0 69 0.0024 22.7 5.4 42 70-114 17-58 (79)
116 1ig6_A MRF-2, modulator recogn 36.0 7 0.00024 31.3 -0.2 40 24-63 37-87 (107)
117 3cz6_A DNA-binding protein RAP 34.6 31 0.001 30.4 3.6 23 11-33 111-141 (168)
118 3i4p_A Transcriptional regulat 34.3 19 0.00063 30.3 2.2 45 73-118 3-48 (162)
119 1c20_A DEAD ringer protein; DN 33.2 59 0.002 26.6 5.1 39 77-115 56-107 (128)
120 3c57_A Two component transcrip 32.6 67 0.0023 24.4 5.0 43 69-114 27-69 (95)
121 3e7l_A Transcriptional regulat 32.6 13 0.00046 26.5 0.9 29 20-49 19-47 (63)
122 3ulq_B Transcriptional regulat 32.2 84 0.0029 23.9 5.5 45 67-114 27-71 (90)
123 2jrz_A Histone demethylase jar 31.7 6.2 0.00021 32.3 -1.2 40 24-63 44-93 (117)
124 1je8_A Nitrate/nitrite respons 30.9 68 0.0023 23.7 4.7 43 69-114 21-63 (82)
125 2yqf_A Ankyrin-1; death domain 30.8 65 0.0022 25.6 4.8 35 71-106 14-48 (111)
126 1fse_A GERE; helix-turn-helix 30.4 75 0.0026 22.1 4.7 44 68-114 10-53 (74)
127 2jxj_A Histone demethylase jar 30.0 28 0.00097 27.0 2.4 38 77-114 40-89 (96)
128 1c20_A DEAD ringer protein; DN 29.8 6.4 0.00022 32.6 -1.5 40 24-63 56-106 (128)
129 2jpc_A SSRB; DNA binding prote 29.0 91 0.0031 21.0 4.8 38 75-114 3-40 (61)
130 2kk0_A AT-rich interactive dom 29.0 63 0.0022 27.2 4.6 39 77-115 68-119 (145)
131 1or7_A Sigma-24, RNA polymeras 27.8 94 0.0032 25.5 5.5 29 85-114 155-183 (194)
132 2kk0_A AT-rich interactive dom 26.9 16 0.00056 30.9 0.5 40 24-63 68-118 (145)
133 1ntc_A Protein (nitrogen regul 26.8 99 0.0034 23.4 5.1 35 72-107 50-84 (91)
134 3e7l_A Transcriptional regulat 26.0 83 0.0029 22.1 4.2 42 73-123 19-60 (63)
135 1ntc_A Protein (nitrogen regul 25.8 26 0.0009 26.8 1.5 30 20-50 51-80 (91)
136 1tty_A Sigma-A, RNA polymerase 25.6 1E+02 0.0034 22.9 4.8 40 74-114 22-65 (87)
137 2dbb_A Putative HTH-type trans 25.6 72 0.0025 25.8 4.3 45 73-118 9-54 (151)
138 2q1z_A RPOE, ECF SIGE; ECF sig 23.7 92 0.0032 25.4 4.7 30 85-115 150-179 (184)
139 2rnj_A Response regulator prot 23.7 87 0.003 23.3 4.2 42 70-114 30-71 (91)
140 2e1c_A Putative HTH-type trans 22.8 63 0.0021 27.4 3.5 44 73-117 27-71 (171)
141 1xsv_A Hypothetical UPF0122 pr 22.6 1.5E+02 0.005 23.4 5.5 40 74-114 29-68 (113)
142 2of5_H Leucine-rich repeat and 21.9 80 0.0027 25.4 3.8 30 76-106 14-43 (118)
143 2cyy_A Putative HTH-type trans 21.7 86 0.0029 25.5 4.0 45 73-118 7-52 (151)
144 2o71_A Death domain-containing 21.5 94 0.0032 25.2 4.1 36 67-106 19-54 (115)
145 3cz6_A DNA-binding protein RAP 20.5 49 0.0017 29.1 2.3 17 63-79 110-126 (168)
146 2of5_A Death domain-containing 20.5 90 0.0031 25.3 3.8 40 63-106 15-54 (114)
147 3mzy_A RNA polymerase sigma-H 20.2 1.3E+02 0.0044 23.6 4.7 29 85-114 123-151 (164)
148 1rp3_A RNA polymerase sigma fa 20.0 1.5E+02 0.0053 24.8 5.5 30 84-114 201-230 (239)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.98 E-value=4.7e-33 Score=228.33 Aligned_cols=105 Identities=46% Similarity=0.936 Sum_probs=99.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 037998 11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWS 90 (348)
Q Consensus 11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs 90 (348)
++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999999999 599999999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998 91 AIATHLPGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 91 ~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (348)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=1.3e-32 Score=234.75 Aligned_cols=114 Identities=37% Similarity=0.699 Sum_probs=107.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHh
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIA 93 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA 93 (348)
||+||+|||++|+++|.+||.++|..||+.+ ++|+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999998999999999 599999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 037998 94 THLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQP 128 (348)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp 128 (348)
++|+|||+++|++||++++++++....++...-.|
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 99999999999999999999999888776554333
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=1.8e-32 Score=226.49 Aligned_cols=104 Identities=30% Similarity=0.617 Sum_probs=100.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHh
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIA 93 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA 93 (348)
||+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999988999999999 499999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998 94 THLPGRTDNEIKNFWNTHLKKKLIQ 118 (348)
Q Consensus 94 ~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (348)
++|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=7.6e-32 Score=228.84 Aligned_cols=106 Identities=36% Similarity=0.675 Sum_probs=100.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN 87 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn 87 (348)
.+.+.++|+||+|||++|+++|++||. +|..||+.+ ++|+++|||+||.++|+|.+++|+||+|||++|+++|++||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999996 999999999 589999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998 88 KWSAIATHLPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (348)
+|+.||++|+|||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888763
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=5.6e-32 Score=229.61 Aligned_cols=108 Identities=44% Similarity=0.904 Sum_probs=101.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN 87 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn 87 (348)
..+++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 3578899999999999999999999988999999999 599999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998 88 KWSAIATHLPGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (348)
+|+.||++|||||+++|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988753
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.6e-32 Score=238.40 Aligned_cols=127 Identities=28% Similarity=0.612 Sum_probs=81.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 037998 11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN-KW 89 (348)
Q Consensus 11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kW 89 (348)
++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 4689999999999999999999988999999999 589999999999999999999999999999999999999996 69
Q ss_pred hhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998 90 SAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH 138 (348)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~ 138 (348)
+.||.+|+|||+.||++||+++|.+.+++..|+++++..+..++..++.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999998888777666554
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=8e-30 Score=223.43 Aligned_cols=108 Identities=44% Similarity=0.898 Sum_probs=102.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN 87 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn 87 (348)
..+.+++|+||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|.+++++||+|||.+|+++|++||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 3578899999999999999999999987899999999 699999999999999999999999999999999999999999
Q ss_pred chhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998 88 KWSAIATHLPGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (348)
+|+.||++|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=3.9e-23 Score=175.17 Aligned_cols=100 Identities=23% Similarity=0.512 Sum_probs=72.8
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998 40 LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ 118 (348)
Q Consensus 40 IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (348)
||+.+ ++|+++||+.||.++|+|.+++|+||+|||++|+++|++||. +|..||..|+|||+.||++||+++|.+.+++
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 67777 699999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred cCCCCCCCCccchhhhcCchhh
Q 037998 119 MGIDPMTHQPRTDIFASLPHLI 140 (348)
Q Consensus 119 ~g~dp~e~qp~~dl~~~lp~l~ 140 (348)
+.|+++++..+..++..++..+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W 101 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRW 101 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH
T ss_pred ccCCHHHHHHHHHHHHHHCcCH
Confidence 9999999888887776665433
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-21 Score=147.56 Aligned_cols=67 Identities=28% Similarity=0.603 Sum_probs=63.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEE 75 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED 75 (348)
..+.+++|+||+|||++|+++|++||.++|..||+.+ ++|+++|||.||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 3578999999999999999999999988999999999 499999999999999999999999999997
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=130.13 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=46.7
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998 53 CRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH 111 (348)
Q Consensus 53 CR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (348)
+--||.++|+|++++++||+|||++|+++|++||++|+.||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999754
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=5.4e-17 Score=125.24 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=60.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037998 61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTH 126 (348)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~ 126 (348)
.+|.+++++||+|||++|+++|++||++|..||++|+|||++|||+||+.++++.+++ |+++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 4688999999999999999999999999999999999999999999999999998877 7776654
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=126.60 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=62.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTH 126 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~ 126 (348)
.+.+++++||+|||++|+++|++|| ++|..||.+|+|||+.||++||+++|++.++++.|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999998875
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=8e-18 Score=142.81 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 037998 9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PDIKRG-KFSQDEEQTIL 79 (348)
Q Consensus 9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L~-----p~ikrg-~WT~EED~~Ll 79 (348)
....++++||+|||+.|+++|++||.++|..|++.++ ++|++.+|++||+|+++ |.+++| +|++||+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 4567899999999999999999999889999998752 58999999999999998 999999 99999999999
Q ss_pred HHHHHhCCchhh
Q 037998 80 HLHSILGNKWSA 91 (348)
Q Consensus 80 ~lv~~~GnkWs~ 91 (348)
.+++.+||+|++
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999987
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.67 E-value=3.2e-17 Score=152.80 Aligned_cols=105 Identities=23% Similarity=0.373 Sum_probs=91.4
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccccccccccccccCCCCC------------------
Q 037998 10 NGLKKGPWTPEEDQKLVEFIQKHGHGS-----WRALPKLAGLNRCGKSCRLRWTNYLRPDIK------------------ 66 (348)
Q Consensus 10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~-----W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ik------------------ 66 (348)
..++|++||+|||++|+++|++||..+ |..||+.+ +||++.|||.||.++|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 467899999999999999999998542 99999998 699999999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 037998 67 -----------RGKFSQDEEQTILHLHSI-L------------------------------------------------- 85 (348)
Q Consensus 67 -----------rg~WT~EED~~Ll~lv~~-~------------------------------------------------- 85 (348)
+..||.|||-.|...+++ +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 789999999999998876 1
Q ss_pred ----C----CchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998 86 ----G----NKWSAIATHLPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 86 ----G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (348)
| ..|..||+.+|+||.+++|+||+..|++.
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999999888664
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.3e-17 Score=121.76 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=58.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 037998 60 YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGI 121 (348)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~ 121 (348)
+|+|.+++++||+|||++|+++|++||++|..||+ ++|||++|||+||+++|++.+++..-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999987654
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=5.6e-17 Score=137.81 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=72.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHH-HHHHHH
Q 037998 10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQDE-EQTILH 80 (348)
Q Consensus 10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L-----~p~ikrg~WT~EE-D~~Ll~ 80 (348)
...++++||.|||+.|+++|++||.++|..|++.++ .+|++.+|++||+|++ +|.+++|.|+++| +.+|+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 456789999999999999999999999999998642 5899999999999999 8999999999999 899999
Q ss_pred HHHHhCCc
Q 037998 81 LHSILGNK 88 (348)
Q Consensus 81 lv~~~Gnk 88 (348)
+|+.+|++
T Consensus 107 ~h~~~g~~ 114 (122)
T 2roh_A 107 AQAYWSVD 114 (122)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhhH
Confidence 99999975
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-16 Score=119.08 Aligned_cols=57 Identities=28% Similarity=0.568 Sum_probs=53.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 037998 9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 66 (348)
Q Consensus 9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ik 66 (348)
.+.+++++||+|||++|+++|.+||.++|..||+.+ ++|+++||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 467899999999999999999999988999999999 599999999999999999876
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=1.2e-16 Score=115.71 Aligned_cols=52 Identities=50% Similarity=0.970 Sum_probs=49.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ 64 (348)
+++|+||+|||++|+++|.+||.++|..||+.+ ++|+++|||.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999987899999999 5999999999999999984
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=3.6e-16 Score=116.26 Aligned_cols=55 Identities=24% Similarity=0.480 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l 116 (348)
.|.+++++||+|||++|+++|++|| ++|+.||++|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4788999999999999999999999 699999999999999999999999987654
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=1.4e-15 Score=116.30 Aligned_cols=63 Identities=27% Similarity=0.348 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHHHHHhcCCC
Q 037998 60 YLRPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKKKLIQMGID 122 (348)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l~k~g~d 122 (348)
...+..++++||+|||++|+++|++|| ++|+.||.+|+ |||+.||++||+++|++.+.+...+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 355678899999999999999999999 79999999999 9999999999999999988776543
No 21
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2e-16 Score=120.99 Aligned_cols=63 Identities=22% Similarity=0.379 Sum_probs=57.8
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccCCCCCCCCCC
Q 037998 9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDIKRGKFS 71 (348)
Q Consensus 9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~-~Rs~kqCR~Rw~n~L~p~ikrg~WT 71 (348)
.+..++++||+|||++|+++|++||.++|..||+.+++ +|+++||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46678999999999999999999998899999999944 8999999999999999999988754
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=1.3e-15 Score=110.05 Aligned_cols=50 Identities=26% Similarity=0.585 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 65 IKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
+++++||+|||++|+++|++||. +|+.||++|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 899999999999999999999999864
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=2.1e-16 Score=114.25 Aligned_cols=52 Identities=35% Similarity=0.801 Sum_probs=47.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ 64 (348)
+++|+||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999988999999999 5999999999999999984
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=2.3e-15 Score=108.90 Aligned_cols=50 Identities=32% Similarity=0.755 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 65 IKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
+++++||+|||++|+++|++||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999998864
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.56 E-value=9.5e-16 Score=129.73 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=81.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhhh
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIA 141 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~a 141 (348)
.+..++|+||+|||++|+++|++||.+|..||+.|+|||..||+.||+++|.+.+.++.|+++++..+..++..++..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~-- 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ-- 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC--
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC--
Confidence 456789999999999999999999999999999999999999999999999999999999999998888776665542
Q ss_pred hcchHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037998 142 LANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQ 175 (348)
Q Consensus 142 ~~Nl~~~~~~~q~e~~~~rlq~~a~~~aklq~~q 175 (348)
|..++..+..+....||-.|..
T Consensus 84 ------------W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 84 ------------WAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp ------------HHHHHTTSTTCCHHHHHHHHHH
T ss_pred ------------HHHHHHHcCCCCHHHHHHHHHH
Confidence 4444444444444555555543
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.54 E-value=1.4e-15 Score=125.13 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998 67 RGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH 138 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~ 138 (348)
+|+||+|||++|+++|++||. +|..||..|+|||..||+.||.++|.+.+.++.|+++++..+..++..++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence 589999999999999999995 799999999999999999999999999999999999999888877776664
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=9.6e-16 Score=125.23 Aligned_cols=75 Identities=23% Similarity=0.499 Sum_probs=68.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998 64 DIKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH 138 (348)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~ 138 (348)
++++|+||+|||++|+++|++||. +|..||..|+|||..||++||.++|.+.++++.|+++++..+..++..++.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999996 699999999999999999999999999999999999998888777666554
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=6.4e-15 Score=107.15 Aligned_cols=49 Identities=29% Similarity=0.425 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk 114 (348)
++++||+|||++|+++|++|| ++|+.||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999998864
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=9.9e-16 Score=116.28 Aligned_cols=57 Identities=33% Similarity=0.486 Sum_probs=49.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCCC
Q 037998 10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDIK 66 (348)
Q Consensus 10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg-~~Rs~kqCR~Rw~n~L~p~ik 66 (348)
...||++||+|||++|+++|++||.++|..||+.++ .+|+++|||+||.|++++.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 345899999999999999999999999999999764 379999999999999998764
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=9.8e-15 Score=108.90 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (348)
.+.+++++||+|||++|+++|++|| ++|..||++|++||++||++||+++|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3578899999999999999999999 899999999999999999999998875
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.2e-15 Score=113.23 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILG------NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G------nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g 120 (348)
+|.+++++||+|||++|+++|++|| ++|..||++|+|||++||++||+++|++.++++-
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 7899999999999999999999999988765543
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.50 E-value=1.9e-15 Score=128.55 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhhhhcch
Q 037998 67 RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANL 145 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~a~~Nl 145 (348)
+|+||+|||++|+++|.+|| ++|..||..|||||..||+.||.++|.+.+.++.|+++++..+..++..++..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~------ 75 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSK------ 75 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSC------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcC------
Confidence 68999999999999999999 77999999999999999999999999999999999999998888877766643
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037998 146 KDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180 (348)
Q Consensus 146 ~~~~~~~q~e~~~~rlq~~a~~~aklq~~q~l~~~ 180 (348)
|..++..+..+....||-.|...|-..
T Consensus 76 --------W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 76 --------WSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp --------HHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred --------HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 444444443344455666666555433
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=2.5e-14 Score=108.57 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHHHH
Q 037998 65 IKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l 116 (348)
.++++||+|||++|+++|++|| ++|+.||+.++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 68999999975 9999999999999887643
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=5e-15 Score=110.50 Aligned_cols=54 Identities=19% Similarity=0.509 Sum_probs=50.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998 10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64 (348)
Q Consensus 10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ 64 (348)
+.+++++||+|||++|+++|++||.++|..||+.+ ++|+++|||.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence 47899999999999999999999988999999999 5999999999999999864
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.48 E-value=4.4e-15 Score=108.00 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccC
Q 037998 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLR 62 (348)
Q Consensus 13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~-~Rs~kqCR~Rw~n~L~ 62 (348)
|+|+||+|||++|+++|++||.++|..||+.+++ +|+++||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999944 7999999999999876
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=7.1e-14 Score=103.74 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC-CCCHHHHHHHHHHHH
Q 037998 63 PDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP-GRTDNEIKNFWNTHL 112 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~L 112 (348)
..+.+++||+|||++|+++|++|| ++|..||++|+ +||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346788999999999999999999 89999999999 999999999998864
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.3e-15 Score=112.55 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=52.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 68 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg 68 (348)
..|.+++++||+|||++|+++|+.||. +|..||+ + ++|+++|||.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence 468899999999999999999999995 9999999 5 46999999999999999877664
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.1e-14 Score=108.04 Aligned_cols=51 Identities=20% Similarity=0.446 Sum_probs=47.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998 11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L 61 (348)
.+.+++||+|||++|+++|++||.++|..||+.++.+|+++|||.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999999999955899999999999875
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=7.7e-15 Score=117.92 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998 60 YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (348)
.+.|.+++|+||+|||++|+++|.+||++|+.||.+|+|||++||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999998774
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-14 Score=111.82 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=55.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCCCCC
Q 037998 9 ENGLKKGPWTPEEDQKLVEFIQKHGH-----GSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 69 (348)
Q Consensus 9 ~~~lKKG~WT~EEDe~L~~lV~k~G~-----~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~ 69 (348)
++.+++++||+|||++|+++|.+||. ++|..||+.+ ++|+.+|||.||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999996 7899999999 599999999999999998887764
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=6.7e-14 Score=107.86 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikr 67 (348)
..|.+++|+||+|||++|+++|++||. +|..||+.+ ++|+..||+.||.+++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999995 999999999 6999999999999999876665
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.35 E-value=2.4e-13 Score=112.80 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=67.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-HH
Q 037998 9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQDEEQT-IL 79 (348)
Q Consensus 9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L-----~p~ikrg~WT~EED~~-Ll 79 (348)
....++++||+|||+.|+++|++||.++|..|++.++ ++|+..+|++||+|++ +|.+++|.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 4678899999999999999999999999999998653 5899999999999998 6999999888877544 77
Q ss_pred HHHHHhCC
Q 037998 80 HLHSILGN 87 (348)
Q Consensus 80 ~lv~~~Gn 87 (348)
++++.+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=3.5e-13 Score=107.38 Aligned_cols=69 Identities=28% Similarity=0.494 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 037998 15 GPWTPEEDQKLVEFIQKHGHGSWRALPKL----AGLNRCGKSCRLRWTNYL-----RPDIKRG-KFSQDEEQTILHLHSI 84 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~----lg~~Rs~kqCR~Rw~n~L-----~p~ikrg-~WT~EED~~Ll~lv~~ 84 (348)
++||+|||+.|+++|++||.|+|..|++. + ++|++.+|++||+|++ +|.+++| +..++...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 4 5899999999999998 6776666 5777888889988865
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1e-12 Score=102.30 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (348)
.+.+.+++||.|||.+|++++++|| ++|.+||++|||||.+||++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999999999 689999999999999999999987764
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.29 E-value=6e-13 Score=103.67 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=48.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 68 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg 68 (348)
..|.+++|+||+|||++|+++|++|| .+|..||+.+ +|++.+|+.||.. |....+.|
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence 46899999999999999999999999 4799999998 6999999999975 55555443
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=101.77 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998 64 DIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH 111 (348)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (348)
...+++||+|||++|+++|++||++|.+||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999765
No 47
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=8.6e-13 Score=111.93 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=50.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 037998 61 LRPDIKRGKFSQDEEQTILHLHSILGN-KWSAIATH----LPGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l 116 (348)
+.+..++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 556788999999999999999999996 99999998 489999999999999998543
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=2.6e-12 Score=119.86 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 037998 63 PDIKRGKFSQDEEQTILHLHSILGNK------WSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRT 130 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~ 130 (348)
+.+++++||+|||+.|+++|+++|++ |..||++|||||+++||+||+++|++++... |+..++..+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li 76 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLV 76 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhh
Confidence 35788999999999999999999975 9999999999999999999999999998744 7666665554
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.23 E-value=1.2e-11 Score=98.47 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chhhHhhh----CCCCCHHHHHHHHHHHHHHHHH
Q 037998 68 GKFSQDEEQTILHLHSILGN-KWSAIATH----LPGRTDNEIKNFWNTHLKKKLI 117 (348)
Q Consensus 68 g~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l~ 117 (348)
++||+|||+.|+++|++||. +|+.|++. |+|||+++||+||++++++.-.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 47999999999999999996 99999996 8999999999999999986643
No 50
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=1.9e-11 Score=99.31 Aligned_cols=60 Identities=20% Similarity=0.443 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHHHH-HHhcCCCCCC
Q 037998 66 KRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLKKK-LIQMGIDPMT 125 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~-l~k~g~dp~e 125 (348)
.+++||.|||.+|++++++|| ++|.+||++|||||.++|++||+.+++.. .+..|..|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P 71 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFP 71 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 467899999999999999996 78999999999999999999999988764 5556665543
No 51
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.22 E-value=3.7e-12 Score=100.40 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=48.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998 7 CDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 7 c~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L 61 (348)
+.+...++++||+|||++|+++|++|| ++|..||+.+| +|+..||+.||.++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 356677899999999999999999999 89999999995 899999999999983
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.18 E-value=2.1e-11 Score=101.04 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=48.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhC----CCCCHHHHHHHHHHHHHHH
Q 037998 63 PDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHL----PGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~ 115 (348)
...++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4567899999999999999999996 999999975 8999999999999998754
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.78 E-value=2.9e-12 Score=102.82 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=50.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p 63 (348)
..+.+++|+||+|||++|+++|.+||. +|..||+.+ ++|+..||+.||.++|+.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 467899999999999999999999995 899999999 599999999999999874
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.15 E-value=1.6e-11 Score=104.32 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhC----CCCCHHHHHHHHHHHHHHHH
Q 037998 63 PDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHL----PGRTDNEIKNFWNTHLKKKL 116 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~l 116 (348)
...++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 3457899999999999999999995 999999874 89999999999999997543
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=5.4e-11 Score=89.88 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHh---hhCCCCCHHHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILGNKWSAIA---THLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA---~~LpgRT~~qcKnRW~~~Lkk 114 (348)
++.+||+|||+.|++.|++||.+|+.|+ ..+++||..++|+||+++.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 567999999999999887653
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.08 E-value=1.7e-11 Score=95.48 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=49.4
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 037998 7 CDENGLKKGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (348)
Q Consensus 7 c~~~~lKKG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~ 62 (348)
-+++...+++||+|||++|++++.+||. .+|..||+.+ ++|+.++|+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 3567788999999999999999999993 5899999999 59999999999998765
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.89 E-value=2.3e-09 Score=87.07 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=60.8
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 037998 50 GKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHL-----PGRTDNEIKNFWNTHLKKKLIQMG 120 (348)
Q Consensus 50 ~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~L-----pgRT~~qcKnRW~~~Lkk~l~k~g 120 (348)
..=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++.++..+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567899999986 89999999999999999999999999999 589999999999999998887765
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.9e-09 Score=79.57 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL 112 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L 112 (348)
..++||+||++++++++.+||.+|..||..||+||..+|..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999997654
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=1.8e-09 Score=83.65 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 037998 64 DIKRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDP 123 (348)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp 123 (348)
..+.+.||.||+++|.+++++|+ ++|.+||+.| |||..+|++||+.+++......|..|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp 67 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence 34578999999999999999997 6799999998 99999999999888766444445444
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.72 E-value=1.4e-09 Score=88.32 Aligned_cols=48 Identities=10% Similarity=0.337 Sum_probs=43.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 037998 13 KKGPWTPEEDQKLVEFIQKHG---HGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 13 KKG~WT~EEDe~L~~lV~k~G---~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L 61 (348)
.+++||+|||++|++++.+|| ...|..||+.+ ++|+.++|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 468999999999999999997 35799999999 5999999999998864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.65 E-value=2.2e-08 Score=92.87 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
..++||+||++++++++.+||++|..||+.+++||..|||++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999887754
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=2.5e-08 Score=74.45 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=46.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L 61 (348)
++.....++||+||++++++++.+|| .+|..||+.+ ++|+..+|+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l-~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYL-ERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHC-TTSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHc-CCCCHHHHHHHHHHhc
Confidence 55666779999999999999999999 6999999988 5999999999986543
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.53 E-value=1.5e-08 Score=76.47 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=44.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccc---cccccccccccccccccccCC
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK---LAGLNRCGKSCRLRWTNYLRP 63 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk---~lg~~Rs~kqCR~Rw~n~L~p 63 (348)
-++++||+|||+.|++.|++||. +|..|+. .+ .+|+...+++||++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHhc
Confidence 37899999999999999999996 9999994 44 589999999999997654
No 64
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.38 E-value=2.9e-07 Score=68.60 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhHhh-hCCCCCHHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSIL--------GNK-WSAIAT-HLPGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~--------Gnk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk 113 (348)
|.+||+|||+.|++.|.++ |++ |..+++ .++++|-.+||+||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 555 999999 8999999999999988764
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.37 E-value=2.9e-07 Score=71.64 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHL 112 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~L 112 (348)
...||.+|+.+|.+++..|+ ++|..||..++|||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46799999999999999998 47999999999999999999997663
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=5.5e-08 Score=75.33 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=44.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccCC
Q 037998 10 NGLKKGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (348)
Q Consensus 10 ~~lKKG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p 63 (348)
...+++.||.|||++|.+++.+|+. +.|..||+.+| |+.++|+.||..+.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 3456789999999999999999984 56999999885 9999999999876543
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.34 E-value=2.3e-07 Score=94.24 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998 68 GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL 112 (348)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L 112 (348)
..||+||-.++++++.+||.+|..||.++++||..|||++|.++.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999997543
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.16 E-value=3e-07 Score=68.57 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 037998 14 KGPWTPEEDQKLVEFIQKH--------GHGSWRALPK-LAGLNRCGKSCRLRWTNYLR 62 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~--------G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n~L~ 62 (348)
+-+||+|||+.|+++|.+| |..-|..+++ .+ ++++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 56 89999999999998875
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=1.4e-05 Score=60.02 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhh-CCCCCHHHHHHHHHHH
Q 037998 62 RPDIKRGKFSQDEEQTILHLHSILGNKWSAIATH-LPGRTDNEIKNFWNTH 111 (348)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~-LpgRT~~qcKnRW~~~ 111 (348)
.|.++...||+||-.+..+.+.+||.+|..|+++ |++||..+|..+|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 3667788999999999999999999999999995 8999999999988643
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.98 E-value=1.7e-06 Score=80.25 Aligned_cols=49 Identities=29% Similarity=0.448 Sum_probs=45.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~ 62 (348)
...++||.||++++++++.+|| ++|..||+.+| +|+..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4568999999999999999999 79999999995 9999999999998765
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.89 E-value=1.4e-05 Score=64.46 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 69 KFSQDEEQTILHLHSILGN---KWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
-||.|||+.|+...++-|. .|+.||+.|.+|+.+|+++||+.+++=
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5999999999999999986 699999999999999999999887753
No 72
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.88 E-value=2.2e-06 Score=66.70 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=43.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccCC
Q 037998 14 KGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p 63 (348)
...||.||+++|.+++..|+. ++|..||+.+| +|+..+|+.||..+++-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999975 57999999995 89999999999887543
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.78 E-value=4.9e-06 Score=64.70 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGN----KWSAIATHLPGRTDNEIKNFWN 109 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~ 109 (348)
.+.||.+|+++|.++++.|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999983 7999999999999999998873
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.69 E-value=0.0001 Score=59.73 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=51.8
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCC-----CCCHHHHHHHHHHHHHHHHHhcC
Q 037998 56 RWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLP-----GRTDNEIKNFWNTHLKKKLIQMG 120 (348)
Q Consensus 56 Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk~l~k~g 120 (348)
-|..+|. ...||.||...|++++++|+-+|..|+..+. .||-.++|.||+.+.++.++..+
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3444554 3689999999999999999999999999873 79999999999999988877543
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.84 E-value=6.1e-06 Score=63.25 Aligned_cols=44 Identities=16% Similarity=0.362 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998 69 KFSQDEEQTILHLHSILGN---KWSAIATHLPGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (348)
.||.|||..|+...++-|. .|..||+.| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999996 699999999 9999999999988764
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.49 E-value=0.00021 Score=68.96 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 037998 15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY--------------------------- 60 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~-------Rw~n~--------------------------- 60 (348)
+.||..+...++.++.+||-.+|..||..++ +++...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999885 565444322 11000
Q ss_pred ----------------cCCCCCCCCCCHHHHHHHHHHHHHhCC----chhhHhh------------hCCCCCHHHHHHHH
Q 037998 61 ----------------LRPDIKRGKFSQDEEQTILHLHSILGN----KWSAIAT------------HLPGRTDNEIKNFW 108 (348)
Q Consensus 61 ----------------L~p~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~------------~LpgRT~~qcKnRW 108 (348)
..+..+...||++||..|+-.+.+||- .|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 011224457999999999999999994 5999972 34679999999999
Q ss_pred HHHHHHH
Q 037998 109 NTHLKKK 115 (348)
Q Consensus 109 ~~~Lkk~ 115 (348)
+++++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.39 E-value=0.00021 Score=57.64 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH 111 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~ 111 (348)
...||+||.++..+....||.+|..|+..|++||..+|-.+|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 457999999999999999999999999999999999999988654
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.00029 Score=53.90 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhh-hCCCCCHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGNKWSAIAT-HLPGRTDNEIKNFWNT 110 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~~ 110 (348)
...||+||-.+..+.+.+||.+|..|++ .|++||..+|..+|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4579999999999999999999999999 5899999999999873
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.26 E-value=4.9e-05 Score=59.10 Aligned_cols=44 Identities=11% Similarity=0.333 Sum_probs=38.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHG---SWRALPKLAGLNRCGKSCRLRWT 58 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~---~W~~IAk~lg~~Rs~kqCR~Rw~ 58 (348)
.+.||.||+++|..++.+|+.+ .|..||+.+| +|+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999753 7999999994 899999999884
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.18 E-value=0.00038 Score=54.56 Aligned_cols=48 Identities=19% Similarity=0.447 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------chhhHhhhC----CCCCHHHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGN----------KWSAIATHL----PGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn----------kWs~IA~~L----pgRT~~qcKnRW~~~Lkk 114 (348)
...||.+|-..||++..++.. .|..||..| -.||+.||+.+|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999976321 399999987 379999999999776655
No 81
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.00016 Score=54.14 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=43.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 037998 8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN 59 (348)
Q Consensus 8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n 59 (348)
..|.++...||+||-++..+++.+|| .+|..|++ .+ +.|+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCcHHHHHHHHhc
Confidence 35778889999999999999999999 69999998 57 58999999877643
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.95 E-value=0.00022 Score=72.58 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=43.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L 61 (348)
....+||.||.+++++++.+|| .+|..|++.+| +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4568999999999999999999 69999999997 999999999987653
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.72 E-value=0.00039 Score=56.29 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=41.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG----LNRCGKSCRLRWTNYL 61 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg----~~Rs~kqCR~Rw~n~L 61 (348)
++.++||.||++.|++++++|+ ..|..|+.... .+|+.-.++.||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 5568999999999999999999 79999998883 3688888888886643
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.38 E-value=0.00026 Score=55.53 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=40.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 037998 13 KKGPWTPEEDQKLVEFIQKHGH---------GSWRALPKLA---GLNRCGKSCRLRWTNYL 61 (348)
Q Consensus 13 KKG~WT~EEDe~L~~lV~k~G~---------~~W~~IAk~l---g~~Rs~kqCR~Rw~n~L 61 (348)
+...||.+|...|+++...+.. .-|..||..+ |..|++.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5688999999999999976421 1599999764 67899999999998864
No 85
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.15 E-value=0.00086 Score=51.41 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccC
Q 037998 15 GPWTPEEDQKLVEFIQKHGH--GSWRALPKLAGLNRCGKSCRLRWTNYLR 62 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~--~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~ 62 (348)
-.||.|||..|+..+++.|. .-|..||+.+ +|+..|+..||+..++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999986 4799999888 5999999999987654
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.04 E-value=0.0016 Score=52.50 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWT 58 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~ 58 (348)
...||+||.+++.+....|| .+|..|++.+ ++|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l-~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFL-ERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTC-TTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc-CCCCHHHHHHHHh
Confidence 46799999999999999999 6999999988 6999999988664
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.01 E-value=0.0018 Score=49.41 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=39.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 037998 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN 59 (348)
Q Consensus 13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n 59 (348)
....||+||-++..+++.+|| .+|..|++ .+ ++|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFL-PWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCCHHHHHHHHHh
Confidence 456899999999999999999 59999998 57 59999999876643
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.97 E-value=0.001 Score=53.70 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccc
Q 037998 16 PWTPEEDQKLVEFIQKHGH--GSWRALPKLAGLNRCGKSCRLRWTNY 60 (348)
Q Consensus 16 ~WT~EEDe~L~~lV~k~G~--~~W~~IAk~lg~~Rs~kqCR~Rw~n~ 60 (348)
-||.|||..|+...++.|. ..|..||+.+| +|+..|+++||+..
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 5999999999999999985 47999999996 89999999998763
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.63 E-value=0.035 Score=54.87 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc----------------------------------------
Q 037998 15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCR---------------------------------------- 54 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR---------------------------------------- 54 (348)
+.||.-+=..++.++.+||-.+-..||..++.+++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999888888888885344433222
Q ss_pred --------cccccc-c--CCC-CCCCCCCHHHHHHHHHHHHHhC----CchhhHhhh------------CCCCCHHHHHH
Q 037998 55 --------LRWTNY-L--RPD-IKRGKFSQDEEQTILHLHSILG----NKWSAIATH------------LPGRTDNEIKN 106 (348)
Q Consensus 55 --------~Rw~n~-L--~p~-ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~------------LpgRT~~qcKn 106 (348)
.-|..+ + .+. .+...||++||..|+-++-+|| +.|..|-.. +..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 111111 0 010 1345699999999999999999 459999543 36799999999
Q ss_pred HHHHHHHHHHH
Q 037998 107 FWNTHLKKKLI 117 (348)
Q Consensus 107 RW~~~Lkk~l~ 117 (348)
|..++++-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999865433
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.10 E-value=0.017 Score=51.56 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=31.8
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037998 5 PCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPK 42 (348)
Q Consensus 5 pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk 42 (348)
|++..+.-....||.+||..|+-.|.+||.++|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 55555555566799999999999999999999999865
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.77 E-value=0.08 Score=39.96 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hhhHhhhC--CCCCHHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILGNK---WSAIATHL--PGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~L--pgRT~~qcKnRW~~~Lk 113 (348)
.+-.||+|..+..++++.++|.. ++.|.+.| +|.|..+|+.+.+.+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999954 78999887 78999999998876653
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.70 E-value=0.45 Score=45.81 Aligned_cols=47 Identities=13% Similarity=0.262 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLK 113 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lk 113 (348)
.+.||..|...++.+..+||. .|..||..|+|+|..+|+.+.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457999999999999999995 69999999999999999877755543
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.94 E-value=0.047 Score=44.09 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=38.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccc
Q 037998 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG----LNRCGKSCRLRWTNY 60 (348)
Q Consensus 12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg----~~Rs~kqCR~Rw~n~ 60 (348)
++...||.||...|++++++|. ..|..|+.... ..|+.-..++||...
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 5567899999999999999999 69999998763 246666666676553
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.27 E-value=0.31 Score=43.34 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CchhhHhhh--CCCCCHHHHHHHHHHHHHHH
Q 037998 66 KRGKFSQDEEQTILHLHSILG---NKWSAIATH--LPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G---nkWs~IA~~--LpgRT~~qcKnRW~~~Lkk~ 115 (348)
....||+.|-..|+.++.+|| .+|..|+.. |.+||..+++.++...+...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 446899999999999999999 579999964 78999999998887766543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.12 E-value=0.24 Score=46.93 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037998 15 GPWTPEEDQKLVEFIQKHGHGSWRALPK 42 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk 42 (348)
..|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999964
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=84.60 E-value=0.32 Score=36.68 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--Ccccccccccc-ccccccccccc
Q 037998 11 GLKKGPWTPEEDQKLVEFIQKHGHG--SWRALPKLAGL-NRCGKSCRLRW 57 (348)
Q Consensus 11 ~lKKG~WT~EEDe~L~~lV~k~G~~--~W~~IAk~lg~-~Rs~kqCR~Rw 57 (348)
...+-.||+|..++++++|+..|.. .++.|.+.++. +.+..+++-|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 4567899999999999999999942 15666666552 34555554443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=72.90 E-value=7.4 Score=36.69 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CchhhHhh--hCCCCCHHHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILG---NKWSAIAT--HLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G---nkWs~IA~--~LpgRT~~qcKnRW~~~Lkk 114 (348)
++.||+.|-..|+..+.+|| .+|..|+. .|+.|+...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999984 57899999998888776654
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=62.77 E-value=24 Score=29.17 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=49.9
Q ss_pred ccCCCCHHHH--HHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC---
Q 037998 13 KKGPWTPEED--QKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN--- 87 (348)
Q Consensus 13 KKG~WT~EED--e~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn--- 87 (348)
=+.+|.+.+. +.|.+++++.|. ....++..-| |.- +. -+|..+|.+.|+
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i~g--k~l--------DL---------------~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGI-TMDELPLIGG--CEL--------DL---------------ACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEETT--EEC--------CH---------------HHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcCCC--Eec--------cH---------------HHHHHHHHHcCcHHH
Confidence 3578988776 568888888884 5555554332 221 11 247788888884
Q ss_pred -----chhhHhhhC--CCC---CHHHHHHHHHHHHHHH
Q 037998 88 -----KWSAIATHL--PGR---TDNEIKNFWNTHLKKK 115 (348)
Q Consensus 88 -----kWs~IA~~L--pgR---T~~qcKnRW~~~Lkk~ 115 (348)
.|..||..| |.- ....+|.+|..+|-+.
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 599999998 221 2457788777766553
No 99
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=61.78 E-value=27 Score=27.47 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC------CCCCCCCCHHHHHHHHHHHHHhCCc
Q 037998 15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP------DIKRGKFSQDEEQTILHLHSILGNK 88 (348)
Q Consensus 15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p------~ikrg~WT~EED~~Ll~lv~~~Gnk 88 (348)
...|.++-..++.++. -| .+-.+||+.+|. +...++ ||...... .......+++++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lgi--s~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKISR--SRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTC--CHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 3578888888888773 46 478899999984 333332 33322211 1122358888888888873322223
Q ss_pred hhhHhhhCCC--CCHHHHHH
Q 037998 89 WSAIATHLPG--RTDNEIKN 106 (348)
Q Consensus 89 Ws~IA~~Lpg--RT~~qcKn 106 (348)
=..|+..| | -+...|..
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 46788777 4 45555553
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=57.20 E-value=16 Score=36.10 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCC-CCCHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGN-KWSAIATHLP-GRTDNEIKNFWNTH 111 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~Lp-gRT~~qcKnRW~~~ 111 (348)
.+.||.-|=..++.+..+||. .-..||..|. |+|..+|+.+....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 357999999999999999995 4999999997 99999999555333
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.72 E-value=2.5 Score=35.29 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRCG----KSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHS 83 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs~----kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~ 83 (348)
+|..+|.+.|- +.|+.|+..+|+..+. ...|..|..+|.+-- .++++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 57788888872 2699999999875433 356778888887632 378889888877654
No 102
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.61 E-value=21 Score=24.92 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 70 FSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
++ +.+..++.++-..|-.+..||..| |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 445566666667788899999999 88999999877665544
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.71 E-value=27 Score=25.09 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998 70 FSQDEEQTILHLHSI----LGNKWSAIATHLPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 70 WT~EED~~Ll~lv~~----~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (348)
.++. +..++.+.-- .|-.+..||..| |-+...|+.+....+++-
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444 4455555544 467799999999 999999998876666543
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.77 E-value=32 Score=27.19 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGRT----DNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgRT----~~qcKnRW~~~Lkk~ 115 (348)
.|..+|.+.|+ .|..|+..|.--. ...+|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777777774 5999999993322 467888888887653
No 105
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.85 E-value=14 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.|..+|.+.|+ .|..||..|.-.....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47788888874 599999998444478889888887755
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=43.81 E-value=30 Score=28.12 Aligned_cols=39 Identities=10% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGRT----DNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgRT----~~qcKnRW~~~Lkk~ 115 (348)
+|..+|.+.|+ +|..|+..|.--. ...+|..|..+|-+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888884 5999999983322 567888888888663
No 107
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.56 E-value=98 Score=25.24 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc------CCCCC----CCCCCHHHHHHHHHHHH
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL------RPDIK----RGKFSQDEEQTILHLHS 83 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L------~p~ik----rg~WT~EED~~Ll~lv~ 83 (348)
..+.|.|+-..++.++. .| ....+||+.+|. +...+ .||.+.. .+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789999888888884 56 478899999974 33333 3443322 22111 23578888888888887
Q ss_pred HhCC-chhhHhhhC
Q 037998 84 ILGN-KWSAIATHL 96 (348)
Q Consensus 84 ~~Gn-kWs~IA~~L 96 (348)
+... .-..|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 6532 223455444
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.17 E-value=21 Score=29.53 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHhCC--------chhhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 037998 78 ILHLHSILGN--------KWSAIATHLPGRTDNEIKNFWNTHLKKKLI 117 (348)
Q Consensus 78 Ll~lv~~~Gn--------kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~ 117 (348)
|..+|.+.|+ +|..|+..|.--....+|..|..+|-+.-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6777777774 499999998444489999999999977533
No 109
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.64 E-value=4 Score=33.38 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=28.4
Q ss_pred HHHHHHHHhCC-------CCcccccccccccccccccccccccccCC
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRCGKSCRLRWTNYLRP 63 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p 63 (348)
+|..+|.+.|- +.|..|+..+|+.. +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46677777762 26999999998655 66777777777764
No 110
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=41.55 E-value=42 Score=27.11 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=48.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 037998 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY------LRPDIK----RGKFSQDEEQTILHLHS 83 (348)
Q Consensus 14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~------L~p~ik----rg~WT~EED~~Ll~lv~ 83 (348)
....|.|+-..++.++. .| ....+||+.+|. +...+ .||... +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lgi--s~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLRV--SHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTC--CHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 45789999989888884 56 478899999984 33222 334322 222222 23478888888888887
Q ss_pred HhCC-chhhHhhhC
Q 037998 84 ILGN-KWSAIATHL 96 (348)
Q Consensus 84 ~~Gn-kWs~IA~~L 96 (348)
+.+. .-..|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 6532 223444443
No 111
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.10 E-value=37 Score=27.85 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCCC----HHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGRT----DNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgRT----~~qcKnRW~~~Lkk~ 115 (348)
+|..+|.+.|+ +|..|+..|.--+ ...+|..|..+|.+.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888774 5999999993322 468899999888764
No 112
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.07 E-value=27 Score=24.70 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHHHH----HhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 74 EEQTILHLHS----ILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 74 ED~~Ll~lv~----~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.+..++.+.- ..|-.+..||+.| |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444554444 2467799999999 99999999887666544
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.14 E-value=41 Score=27.50 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCC--C--HHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGR--T--DNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgR--T--~~qcKnRW~~~Lkk~ 115 (348)
+|..+|.+.|+ +|..|+..|.-. + ...+|..|..+|-+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888874 599999999322 1 368899898888763
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.39 E-value=44 Score=25.05 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHH---HHHHhcCC
Q 037998 74 EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLK---KKLIQMGI 121 (348)
Q Consensus 74 ED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk---k~l~k~g~ 121 (348)
.+..++.++-..|-.-..||+.| |-+...|+.+....++ +.+.+.++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l~~~~~ 90 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRLTLQELGV 90 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44555666556677899999999 8888888877765544 34444443
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.01 E-value=69 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 70 FSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
+|+.|- .++.++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455444 444454 5677799999999 88999999877555443
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.96 E-value=7 Score=31.26 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRC----GKSCRLRWTNYLRP 63 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs----~kqCR~Rw~n~L~p 63 (348)
+|..+|.+.|- +.|..|+..+|+... +..++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777752 269999999986442 35667778777765
No 117
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=34.63 E-value=31 Score=30.42 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=19.0
Q ss_pred CCccCCCCHHHHHHH--------HHHHHHhC
Q 037998 11 GLKKGPWTPEEDQKL--------VEFIQKHG 33 (348)
Q Consensus 11 ~lKKG~WT~EEDe~L--------~~lV~k~G 33 (348)
.-..|-||+|+|+.| .++++|||
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 345789999999987 56889998
No 118
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.29 E-value=19 Score=30.25 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998 73 DEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ 118 (348)
Q Consensus 73 EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (348)
+-|.+|+++.++.|. .|..||+.+ |=+...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 557888888888774 599999999 999999999997766666544
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.24 E-value=59 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------chhhHhhhCC--CC---CHHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLP--GR---TDNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~Lp--gR---T~~qcKnRW~~~Lkk~ 115 (348)
.|..+|.+.|+ .|..|+..|. .. ....+|..|..+|.+.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888874 5999999982 22 2578899999888774
No 120
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.62 E-value=67 Score=24.39 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 69 KFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
..|+.|-+.|. ++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655554 45 6777899999999 88999999877655544
No 121
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=32.58 E-value=13 Score=26.49 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccc
Q 037998 20 EEDQKLVEFIQKHGHGSWRALPKLAGLNRC 49 (348)
Q Consensus 20 EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs 49 (348)
-|.+.|.++++.++ ++....|+.+|..|.
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 47778888888988 799999999997654
No 122
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.19 E-value=84 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
....|+.|-+.|.- +. .|-.-..||..| |-+...|+.+....++|
T Consensus 27 ~~~Lt~rE~~Vl~l-~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQE-VE-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHH-HH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34678877665554 44 788899999999 89999999877665544
No 123
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=31.73 E-value=6.2 Score=32.30 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=26.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc---ccccccccccccCC
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRC---GKSCRLRWTNYLRP 63 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs---~kqCR~Rw~n~L~p 63 (348)
+|..+|.+.|- +.|..|+..+|+... +...|..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777762 269999999986543 33455566666543
No 124
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.85 E-value=68 Score=23.67 Aligned_cols=43 Identities=26% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 69 KFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
..|+.|-+.|. ++ ..|-.-.+||+.| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655544 44 5677899999999 89999999877555443
No 125
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=30.78 E-value=65 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHH
Q 037998 71 SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKN 106 (348)
Q Consensus 71 T~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (348)
++.-+..|..+....|..|..+|.+| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66667788888899999999999999 788877754
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.39 E-value=75 Score=22.10 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 68 GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
..+|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777655544 4 5677899999999 88999999877655543
No 127
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=30.04 E-value=28 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=26.4
Q ss_pred HHHHHHHHhCC--------chhhHhhhCCCC----CHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLPGR----TDNEIKNFWNTHLKK 114 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~LpgR----T~~qcKnRW~~~Lkk 114 (348)
.|..+|.+.|+ +|.+|+..|.-- ....+|..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 37777777763 599999998321 256778888777654
No 128
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=29.76 E-value=6.4 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=26.5
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRC----GKSCRLRWTNYLRP 63 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs----~kqCR~Rw~n~L~p 63 (348)
+|..+|.+.|- +.|..|+..+|+... +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777762 269999999986543 23456666666654
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.03 E-value=91 Score=20.99 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 75 EQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 75 D~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455666 35677789999999 88999999877665544
No 130
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.95 E-value=63 Score=27.19 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------chhhHhhhCC--CC---CHHHHHHHHHHHHHHH
Q 037998 77 TILHLHSILGN--------KWSAIATHLP--GR---TDNEIKNFWNTHLKKK 115 (348)
Q Consensus 77 ~Ll~lv~~~Gn--------kWs~IA~~Lp--gR---T~~qcKnRW~~~Lkk~ 115 (348)
+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47778888874 5999999982 22 2568899998888664
No 131
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.82 E-value=94 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=23.4
Q ss_pred hCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 85 LGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.|-....||..| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356699999999 89999999888766654
No 132
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=26.93 E-value=16 Score=30.93 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CCccccccccccccc----ccccccccccccCC
Q 037998 24 KLVEFIQKHGH-------GSWRALPKLAGLNRC----GKSCRLRWTNYLRP 63 (348)
Q Consensus 24 ~L~~lV~k~G~-------~~W~~IAk~lg~~Rs----~kqCR~Rw~n~L~p 63 (348)
+|..+|.+.|- +.|..|+..+|+..+ +..++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 35555655552 259999999986442 34567777777766
No 133
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.78 E-value=99 Score=23.42 Aligned_cols=35 Identities=11% Similarity=-0.021 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHH
Q 037998 72 QDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNF 107 (348)
Q Consensus 72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnR 107 (348)
+-|...|.+++.+++++.++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999999 7676665543
No 134
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.04 E-value=83 Score=22.15 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 037998 73 DEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDP 123 (348)
Q Consensus 73 EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp 123 (348)
-|.+.|.++...++++.++.|+.| |=+... |.+++++-++.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~t--------L~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSN--------LYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHH--------HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHH--------HHHHHHHhCCCC
Confidence 477788899999999999999998 545443 334556666543
No 135
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.77 E-value=26 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccc
Q 037998 20 EEDQKLVEFIQKHGHGSWRALPKLAGLNRCG 50 (348)
Q Consensus 20 EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~ 50 (348)
-|.+.|.+++++++ ++....|+.+|+.|..
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~t 80 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAAT 80 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHHH
Confidence 36777888888888 7899999999976653
No 136
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.62 E-value=1e+02 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH----hCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 74 EEQTILHLHSI----LGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 74 ED~~Ll~lv~~----~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.+..++.+.-- .|-.+..||..| |-+...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555443 456799999999 99999999877665544
No 137
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.56 E-value=72 Score=25.82 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998 73 DEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ 118 (348)
Q Consensus 73 EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (348)
+-|..|+.+.++.| -.++.||+.+ |-+...|..+.+.+.+..+.+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667788777776 4599999999 889999999997777666554
No 138
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=23.74 E-value=92 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=23.8
Q ss_pred hCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998 85 LGNKWSAIATHLPGRTDNEIKNFWNTHLKKK 115 (348)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~ 115 (348)
.|-....||..| |-+...|+.+....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 356689999999 889999998887666543
No 139
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.71 E-value=87 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 70 FSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.|+.|-+.| .++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 555555444 444 5677899999999 89999999877554443
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.79 E-value=63 Score=27.41 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 037998 73 DEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLI 117 (348)
Q Consensus 73 EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~ 117 (348)
+-|..|+.+.++.|. .++.||+.+ |-+...|+.|++.+.+..+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 556778888887774 599999999 88999999999666555544
No 141
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.58 E-value=1.5e+02 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 74 EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 74 ED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.+..++.++-..|-....||..| |-+...|+.+.+..+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455556666778899999999 88999998877655544
No 142
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.92 E-value=80 Score=25.45 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCchhhHhhhCCCCCHHHHHH
Q 037998 76 QTILHLHSILGNKWSAIATHLPGRTDNEIKN 106 (348)
Q Consensus 76 ~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (348)
..|..+.+..|..|..+|..| |=+..+|..
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 457777888999999999999 766766543
No 143
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.69 E-value=86 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998 73 DEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ 118 (348)
Q Consensus 73 EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k 118 (348)
+-|..|+.+..+.|. .++.||+.+ |-+...|..|.+.+.+..+.+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 346677888777764 599999999 889999999997776666554
No 144
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=21.47 E-value=94 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHH
Q 037998 67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKN 106 (348)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (348)
...=|++ .|..+....|..|+.+|..| |=+..+|..
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344444 46666788999999999999 777776654
No 145
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.52 E-value=49 Score=29.11 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=14.5
Q ss_pred CCCCCCCCCHHHHHHHH
Q 037998 63 PDIKRGKFSQDEEQTIL 79 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll 79 (348)
|.-.+|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999987
No 146
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=20.51 E-value=90 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHH
Q 037998 63 PDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKN 106 (348)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKn 106 (348)
+.+....=|++ .|..+....|..|+.+|..| |=+..+|..
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33444445555 46666788999999999999 777776654
No 147
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.19 E-value=1.3e+02 Score=23.61 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=21.9
Q ss_pred hCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 85 LGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 85 ~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
.|-....||+.| |-+...|+.+....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 355689999999 88888888877655443
No 148
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.01 E-value=1.5e+02 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=22.9
Q ss_pred HhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998 84 ILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114 (348)
Q Consensus 84 ~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk 114 (348)
..|-....||+.| |-+...|+.+....+++
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3456799999999 88999998877655443
Done!