BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037999
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 295 bits (754), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 178/463 (38%), Positives = 255/463 (55%), Gaps = 29/463 (6%)
Query: 1 MLTLAELFSHAGFRVTFVNTEQYHDRLLGNNDVTGFYKRFPNFRFTSIPDGLPP------ 54
+ LA+L GF +TFVNTE H RLL + F F +F F SIPDGL P
Sbjct: 25 LFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF-DGFTDFNFESIPDGLTPMEGDGD 83
Query: 55 ---DNPRFGIYIKDWFCSDKPVSKLAFLQLLMSPGLLP-TCIISDSIMSFTIDVAEELNI 110
D P ++ F KP +L +L S + P TC++SD MSFTI AEE +
Sbjct: 84 VSQDVPTLCQSVRKNFL--KPYCEL-LTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFEL 140
Query: 111 PIITFRPYSAHCSWSDFHFSKLAEEGELPVTNENF------DKPVKCIPGLENFFRNRDL 164
P + + SA + HF E G +P +E++ + V IPGL+NF R +D+
Sbjct: 141 PNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNF-RLKDI 199
Query: 165 PSICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKLGSRLTKIYTVGPLH 224
R P+D +L+ FI + + +++NTFNE+E +I+ L S + IY +GPL
Sbjct: 200 VDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLP 259
Query: 225 ALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSRSVLYVSFGSFIKLGREQIL 284
+LLK Q +S +SN L KED C+ WL+S+ SV+YV+FGS + EQ+L
Sbjct: 260 SLLKQTPQIHQLDSL--DSN---LWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLL 314
Query: 285 EFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELEQGTKERGCIVSWAPQEEVLAHQAI 344
EF G+ N K FLW+IR DL+ G G E +RG I SW PQ++VL H +I
Sbjct: 315 EFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSI 372
Query: 345 GGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENL 404
GGFLTH GWNST ES+ AGVPM+CWP DQ + R + W+IG+++ R + L
Sbjct: 373 GGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKL 432
Query: 405 VRDLM-DNKRDKIMESTVQIAKMARDAVKEGGSSYRNLDKLIK 446
+ +++ +K K+ + +++ K A + + GG SY NL+K+IK
Sbjct: 433 INEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIK 475
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 180/377 (47%), Gaps = 45/377 (11%)
Query: 86 GLLPTCIISDSIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAE--EGELPVTNE 143
G LPT ++ D + DVA E ++P F P +A+ H KL E E E
Sbjct: 108 GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTE 167
Query: 144 NFDKPVKCIPGLENFFRNRDLPSICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIE 203
P C+P +D +D D + + +T +++NTF E+E
Sbjct: 168 PLMLP-GCVP-----VAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
Query: 204 GPIISKL---GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLD 260
I L G +Y VGPL + K ++ E+ C+ WLD
Sbjct: 220 PNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ----------------TEESECLKWLD 263
Query: 261 SQPSRSVLYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRS-------DLIDGEPGVG 313
+QP SVLYVSFGS L EQ+ E G+ +S +RFLWVIRS D
Sbjct: 264 NQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTD 323
Query: 314 PV---PVELEQGTKERGCIVS-WAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICW 369
P+ P + TK+RG ++ WAPQ +VLAH + GGFLTH GWNSTLES+V+G+P+I W
Sbjct: 324 PLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAW 383
Query: 370 PQIGDQQVNSRCVSEIWKIGLDMKDTCD----RSTIENLVRDLMDNKRDK-IMESTVQIA 424
P +Q++N+ +SE + L + D R + +V+ LM+ + K + ++
Sbjct: 384 PLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELK 443
Query: 425 KMARDAVKEGGSSYRNL 441
+ A +K+ G+S + L
Sbjct: 444 EAACRVLKDDGTSTKAL 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 203/424 (47%), Gaps = 51/424 (12%)
Query: 41 PNFRFTSIPDGLPP-----DNPRFGIYIKDWFCSDKPVSKLAFLQLLMSPGLLPTCIISD 95
P + +P+ PP +P F YI + S P K A ++ ++S ++ ++ D
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEF--YILTFLESLIPHVK-ATIKTILSNKVV--GLVLD 121
Query: 96 SIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNENFDKPVKCIPGL 155
IDV E IP F +++ + S + E + + D + IPG+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLF--LTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 156 ENFFRNRDLPSIC--RDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKL--- 210
N + LP C +DGG + + T +++NTF+++E I L
Sbjct: 180 SNQVPSNVLPDACFNKDGG-----YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 211 GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSRSVLYV 270
++ IY VGPL L + N + + + WLD QP +SV+++
Sbjct: 235 DEKIPPIYAVGPLLDL-------------KGQPNPKLDQAQHDLILKWLDEQPDKSVVFL 281
Query: 271 SFGSF-IKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELEQGTKERGCI 329
FGS + G QI E G+ +SG RFLW + E V P + +G I
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSA-----EKKVFPEGFLEWMELEGKGMI 336
Query: 330 VSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEIWKIG 389
WAPQ EVLAH+AIGGF++H GWNS LES+ GVP++ WP +QQ+N+ + + W +G
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 390 LDMK-------DTCDRSTIENLVRDLMDNKRDKIMESTVQ-IAKMARDAVKEGGSSYRNL 441
L ++ D IE ++DLMD +D I+ VQ + +M+R+AV +GGSS ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 442 DKLI 445
KLI
Sbjct: 455 GKLI 458
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 130/424 (30%), Positives = 203/424 (47%), Gaps = 51/424 (12%)
Query: 41 PNFRFTSIPDGLPP-----DNPRFGIYIKDWFCSDKPVSKLAFLQLLMSPGLLPTCIISD 95
P + +P+ PP +P F YI + S P K A ++ ++S ++ ++ D
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEF--YILTFLESLIPHVK-ATIKTILSNKVV--GLVLD 121
Query: 96 SIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNENFDKPVKCIPGL 155
IDV E IP F +++ + S + E + + D + IPG+
Sbjct: 122 FFCVSMIDVGNEFGIPSYLF--LTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 156 ENFFRNRDLPSIC--RDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISKL--- 210
N + LP C +DGG + + T +++NTF+++E I L
Sbjct: 180 SNQVPSNVLPDACFNKDGG-----YIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 211 GSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSRSVLYV 270
++ IY VGPL L + N + + + WLD QP +SV+++
Sbjct: 235 DEKIPPIYAVGPLLDL-------------KGQPNPKLDQAQHDLILKWLDEQPDKSVVFL 281
Query: 271 SFGSF-IKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELEQGTKERGCI 329
FGS + G QI E G+ +SG RFLW + E V P + +G I
Sbjct: 282 CFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSA-----EKKVFPEGFLEWMELEGKGMI 336
Query: 330 VSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEIWKIG 389
WAPQ EVLAH+AIGGF++H GWNS LES+ GVP++ WP +QQ+N+ + + W +G
Sbjct: 337 CGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
Query: 390 LDMK-------DTCDRSTIENLVRDLMDNKRDKIMESTVQ-IAKMARDAVKEGGSSYRNL 441
L ++ D IE ++DLMD +D I+ VQ + +M+R+AV +GGSS ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 442 DKLI 445
KLI
Sbjct: 455 GKLI 458
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 198/421 (47%), Gaps = 50/421 (11%)
Query: 40 FPNFRFTSIPDGLPPD-----NPRFGIYIKDWFCSDKPVSKLAFLQLLMSPGLLPTCIIS 94
PN ++ ++ DGLP NPR I++ + + + K + + G TC+++
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFL--FIKAMQENFKHVIDEAVAETGKNITCLVT 123
Query: 95 DSIMSFTIDVAEELN---IPIITFRPYS--AHCSWSDFHFSKLAEEGELPVTNENFD-KP 148
D+ F D+AEE++ +P+ T P+S H ++D K + E D K
Sbjct: 124 DAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV-YTDLIREKTG-------SKEVHDVKS 175
Query: 149 VKCIPGLENFFRNRDLP-SICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPII 207
+ +PG + DLP + +D D P + R +A+ IN+F I I
Sbjct: 176 IDVLPGFPEL-KASDLPEGVIKD--IDVPFATMLHKMGLELPRANAVAINSFATIHPLIE 232
Query: 208 SKLGSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSRSV 267
++L S+ + VGP + R D + C+ WLD + SV
Sbjct: 233 NELNSKFKLLLNVGPFNLTTPQRKVSD-----------------EHGCLEWLDQHENSSV 275
Query: 268 LYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELEQGTKERG 327
+Y+SFGS + ++ + G F+W R D + +P + TK +G
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKE------KLPKGFLERTKTKG 329
Query: 328 CIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEIWK 387
IV+WAPQ E+L H ++G FLTHSGWNS LE +V GVPMI P GDQ +N+ + +
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLE 389
Query: 388 IGLDMKD-TCDRSTIENLVRDLMDNKRDKIM-ESTVQIAKMARDAVKEGGSSYRNLDKLI 445
IG+ + + + +I+ + M +++ IM + V++ + A AV++ G+S + LI
Sbjct: 390 IGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
Query: 446 K 446
+
Sbjct: 450 Q 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 168/358 (46%), Gaps = 26/358 (7%)
Query: 90 TCIISDSIMSFTIDVAEELNIPIITFRPYSAHCSWSDFHFSKLAEEGELPVTNENFDKPV 149
+C+++D+ + F D+A E+ + + F + + + ++ E+ + D+ +
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELL 173
Query: 150 KCIPGLENFFRNRDLPSICRDGGPDDPILQTFIRDTSATTRTSALVINTFNEIEGPIISK 209
IPG+ R RDL G + + R + +A+ IN+F E++ + +
Sbjct: 174 NFIPGMSKV-RFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTND 232
Query: 210 LGSRLTKIYTVGPLHALLKSRIQEDSAESSPPESNNCVLSKEDRSCMTWLDSQPSRSVLY 269
L S+L +GP + + + PP N C+ WL + SV+Y
Sbjct: 233 LKSKLKTYLNIGPFNLI-----------TPPPVVPNTT------GCLQWLKERKPTSVVY 275
Query: 270 VSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDGEPGVGPVPVELEQGTKERGCI 329
+SFG+ +++ + S F+W +R + +P + T+ G +
Sbjct: 276 ISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMV 329
Query: 330 VSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEIWKIG 389
V WAPQ EVLAH+A+G F+TH GWNS ES+ GVP+IC P GDQ++N R V ++ +IG
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 390 LDMKDTC-DRSTIENLVRDLMDNKRDKIMESTVQIAKMARD-AVKEGGSSYRNLDKLI 445
+ ++ +S + + ++ ++ K + ++ + D AV GSS N L+
Sbjct: 390 VRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Query: 252 DRSCM-TWLDSQPSRSVLYVSFGSFIKLGREQILEF------------WHGMVNSGKRFL 298
DRS TW R VL ++ GS L+F WH +++ G+
Sbjct: 241 DRSHQGTWEGPGDGRPVLLIALGSAFT----DHLDFYRTCLSAVDGLDWHVVLSVGR--- 293
Query: 299 WVIRSDLIDGEPGVGPVPVELEQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLE 358
+V +DL G VP +E + W PQ ++L + F+TH+G ST+E
Sbjct: 294 FVDPADL-------GEVPPNVE--------VHQWVPQLDILTKAS--AFITHAGMGSTME 336
Query: 359 SLVAGVPMICWPQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENL 404
+L VPM+ PQI +Q +N+ + E +GL D+ T E L
Sbjct: 337 ALSNAVPMVAVPQIAEQTMNAERIVE---LGLGRHIPRDQVTAEKL 379
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 329 IVSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVN 378
+ W PQ ++L H F+TH G N E++ G+P + P DQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 44/203 (21%)
Query: 258 WLDSQPSRSVLYVSFGS-FIK---LGREQILEF-----WHGMVNSGKRFLWVIRSDLIDG 308
W + V+ VS GS F K RE + F WH ++ G++ V ++L
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRK---VTPAEL--- 278
Query: 309 EPGVGPVPVELEQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMIC 368
G +P +E + W PQ +L + F+TH+G + E L PMI
Sbjct: 279 ----GELPDNVE--------VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIA 324
Query: 369 WPQIGDQQVNSRCVSEIWKIGLDMKDTCDRSTIENLVRD----LMDNKRDKIMESTVQIA 424
PQ DQ N+ + +G+ K + +T +L+R+ L+D+ E ++
Sbjct: 325 VPQAVDQFGNADMLQ---GLGVARKLATEEATA-DLLRETALALVDDP-----EVARRLR 375
Query: 425 KMARDAVKEGGSSYRNLDKLIKA 447
++ + +EGG+ R LI+A
Sbjct: 376 RIQAEMAQEGGT--RRAADLIEA 396
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 258 WLDSQPSRSVLYVSFGSFIKLGREQILEFWHGMVNSGKRFLWVIRSDLIDG--EPGV-GP 314
W +P VL VS G+ + EF+ + W + I G +P V GP
Sbjct: 224 WQPPRPDAPVLLVSLGNQFN----EHPEFFRACAQAFADTPWHV-VXAIGGFLDPAVLGP 278
Query: 315 VPVELEQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGD 374
+P +E W P VLAH LTH + LE+ AGVP++ P
Sbjct: 279 LPPNVEAH--------QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFAT 328
Query: 375 QQVNSRCVSEIWKIGL-------DMKDTCDRSTIENLVRD 407
+ S + ++GL ++ R +E L D
Sbjct: 329 EAAPS--AERVIELGLGSVLRPDQLEPASIREAVERLAAD 366
>pdb|1IKO|P Chain P, Crystal Structure Of The Murine Ephrin-B2 Ectodomain
Length = 178
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 9 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 68
Query: 405 VRDLMDNKR-DKIMESTVQIAKMA 427
L++ R D+ ++ T++ + +
Sbjct: 69 NTPLLNCARPDQDVKFTIKFQEFS 92
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 311 GVGPVPVELEQGTKERGCIVSWAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWP 370
G+G VP + + SW PQ +L H + + H G +TL +L AGVP + +P
Sbjct: 286 GLGEVPANVR--------LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
Query: 371 QIGD 374
GD
Sbjct: 336 WAGD 339
>pdb|2HLE|B Chain B, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 138
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMDNKR-DKIMESTVQIAKMA 427
L++ R D+ ++ T++ + +
Sbjct: 68 NTPLLNCARPDQDVKFTIKFQEFS 91
>pdb|2VSM|B Chain B, Nipah Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 140
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMD-NKRDKIMESTVQIAKMA 427
L++ K D+ ++ T++ + +
Sbjct: 68 NTPLLNCAKPDQDIKFTIKFQEFS 91
>pdb|2VSK|B Chain B, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|D Chain D, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 138
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMD-NKRDKIMESTVQIAKMA 427
L++ K D+ ++ T++ + +
Sbjct: 68 NTPLLNCAKPDQDIKFTIKFQEFS 91
>pdb|1KGY|E Chain E, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|F Chain F, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|G Chain G, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|H Chain H, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 138
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 8 WNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 67
Query: 405 VRDLMDNKR-DKIMESTVQIAKMA 427
L++ R D+ ++ T++ + +
Sbjct: 68 NTPLLNCARPDQDVKFTIKFQEFS 91
>pdb|3GXU|B Chain B, Crystal Structure Of Eph Receptor And Ephrin Complex
Length = 143
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 9 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 68
Query: 405 VRDLMD-NKRDKIMESTVQIAKMA 427
L++ K D+ ++ T++ + +
Sbjct: 69 NTPLLNCAKPDQDIKFTIKFQEFS 92
>pdb|2I85|A Chain A, Nmr Solution Structure Of Human Ephrinb2 Ectodomain
Length = 142
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIENL 404
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 11 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKE 70
Query: 405 VRDLMD-NKRDKIMESTVQIAKMA 427
L++ K D+ ++ T++ + +
Sbjct: 71 NTPLLNCAKPDQDIKFTIKFQEFS 94
>pdb|2WO2|B Chain B, Crystal Structure Of The Epha4-Ephrinb2 Complex
Length = 153
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 353 WNSTLESLVAGVPMICWPQIGDQ------QVNSRCVS--EIWKIGLDMKDTCDRSTIE 402
WNS+ + G ++ +PQIGD+ +V+S+ V E +K+ + KD DR TI+
Sbjct: 12 WNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIK 69
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 332 WAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEI 385
W P +VL + +TH G + E+L G P++ PQ D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 332 WAPQEEVLAHQAIGGFLTHSGWNSTLESLVAGVPMICWPQIGDQQVNSRCVSEI 385
W P +VL + +TH G + E+L G P++ PQ D Q +R V ++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 305 LIDGEPGVGPVPVELEQGTKERGCIVSWAPQE--EVLAHQAI 344
LID PG G P+ + Q K G +V PQE V+ +AI
Sbjct: 133 LIDLPPGTGDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAI 174
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 126 DFHFSKLAEEGELPVTNENFDKPVKCIPGLENFFRNRDLPSICRDGGPDDPILQTFIRDT 185
D F++ + GELP + N + + N F LP++C++ P + + + ++++
Sbjct: 346 DLSFNEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQELYLQNN 401
Query: 186 SATTRTSALVIN---------TFNEIEGPIISKLGSRLTKI 217
T + + N +FN + G I S LGS L+K+
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKL 441
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 126 DFHFSKLAEEGELPVTNENFDKPVKCIPGLENFFRNRDLPSICRDGGPDDPILQTFIRDT 185
D F++ + GELP + N + + N F LP++C++ P + + + ++++
Sbjct: 349 DLSFNEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--PKNTLQELYLQNN 404
Query: 186 SATTRTSALVIN---------TFNEIEGPIISKLGSRLTKI 217
T + + N +FN + G I S LGS L+K+
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKL 444
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 305 LIDGEPGVGPVPVELEQGTKERGCIVSWAPQE 336
LID PG G P+ + Q K G ++ PQE
Sbjct: 133 LIDLPPGTGDAPLTVXQDAKPNGAVIVSTPQE 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,758,733
Number of Sequences: 62578
Number of extensions: 596023
Number of successful extensions: 1141
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 29
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)