BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038004
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 22/194 (11%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETL---- 141
IL+ L+ VEPGQ LA++GPSGCGKST++ AL R GEI I+G + +TL
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTL--GGEIFIDGSEIKTLNPEH 1150
Query: 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGLQ 196
A V+QE TL ++ E + Y P S++ ++ E A + I E L
Sbjct: 1151 TRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAE--LP 1204
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+ +TR+G + +SGGQK+R++I ++ PK+L LDE TS LD+ S V++ ++
Sbjct: 1205 EGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDT-ESEKVVQEALDR 1262
Query: 257 AHEDGITVVASIHQ 270
A E G T + H+
Sbjct: 1263 ARE-GRTCIVIAHR 1275
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
IL+ + V GQ +A++G SGCGKST++ L L G+I I+G R L F
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKITIDGVDVRDINLEF 489
Query: 144 --GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
A V+QE L T+ E + + + M + K AE I+ L + +T
Sbjct: 490 LRKNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKT--LPNGYNT 546
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G + +SGGQK+R++I ++ PK+L LDE TS LD A S ++++ ++ A +
Sbjct: 547 LVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALD-AESEGIVQQALDKAAKGR 604
Query: 262 ITVVASIHQPSS 273
T++ + H+ S+
Sbjct: 605 TTIIIA-HRLST 615
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 16/184 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---------LAFGT 145
++ G+ ++IMGPSG GKST+L+ + G L TE GE+ I+ K +
Sbjct: 28 IKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+V Q+ L+ LT +E V + +MS E+R+RA ++ L++ R
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE----RFAN 140
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++RV+I + P ++ D+PT LDS +M+ + L EDG TVV
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 266 ASIH 269
H
Sbjct: 201 VVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET------- 140
L+ + ++ G+ ++IMGPSG GKST+L+ + G L TE GE+ I+ K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDEL 77
Query: 141 --LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
+ +V Q+ L+ LT +E V + +MS E+R+RA ++ L++
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE- 136
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
R +SGGQ++RV+I + P ++ D+PT LDS +M+ + L
Sbjct: 137 ---RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 259 EDGITVVASIH 269
EDG TVV H
Sbjct: 194 EDGKTVVVVTH 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 23/222 (10%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
KK R + IL+ ++ V+ G+ ++I+G SG GKSTLL L G L + TE G++ + G++
Sbjct: 11 KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTE--GKVFLEGKE 67
Query: 139 ---------ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
L +V Q L+ LT +E V L + E +ER E
Sbjct: 68 VDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP---MLKMGKPKKEAKERGEYL 124
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ E+GL D + + +SGG+++RV+I + P LLF DEPT LDSA + V
Sbjct: 125 LSELGLGDKLSRK-----PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 250 MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
M + + +E G ++V H+ ++ EL H + GK +
Sbjct: 180 MDIFLKI-NEGGTSIVMVTHE--RELAELTHRTLEMKDGKVV 218
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RK 138
HA L+ + ++ G++ AI+G +G GKSTL G L ++ G IL + RK
Sbjct: 22 HA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDNKPIDYSRK 77
Query: 139 ETLAFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
+ S + +D L + + + + ++LP+ E R+R + ++ G+
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGI 133
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+ D +S GQK+RV+I ++ PK+L LDEPT+GLD +MK +V
Sbjct: 134 EHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 256 LAHEDGITVVASIHQPSSDVFELF-HNLCLLAYGKTIYFG 294
+ E GIT++ + H D+ L+ N+ ++ G+ I G
Sbjct: 189 MQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
V+ G+ +A++GPSGCGK+T L LAG + +S ++L+N + V Q
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGMVFQN 83
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
L +TV E + + + + +S+ E +R R++ + + +D + +S
Sbjct: 84 YALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLS 135
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
GGQ++RV++ ++ +PK+L DEP S LD+ + I +L E GIT V H
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-Q 194
Query: 273 SDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS--NGFPCPSLRNPSDHYLR 322
++ + + + GK + +G ++++ S N F + NP ++LR
Sbjct: 195 AEAMTMASRIAVFNQGKLVQYG---TPDEVYDSPKNMFVASFIGNPPTNFLR 243
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---------LAFGT 145
++ G+ ++I GPSG GKST L+ + G L TE GE+ I+ K +
Sbjct: 28 IKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTE--GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+V Q+ L+ LT +E V + + S E+R+RA ++ L++ R
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE----RFAN 140
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++RV+I + P ++ DEPT LDS + + + L EDG TVV
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 266 ASIH 269
H
Sbjct: 201 VVTH 204
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKST-------LLDAL 118
L +K++ PS K+ IL+ L V+ GQ +A++G SGCGKST L D L
Sbjct: 388 LEFKNIHFSYPSRKEVQ----ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 119 AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
G +S + + I + +E + V+QE L T T+ E + Y + D +
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGV-----VSQEPVLFAT-TIAENIRYGREDVTMDEIE 497
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238
++ K A I M L DT +G + +SGGQK+R++I ++ PK+L LDE T
Sbjct: 498 KAVKEANAYDFI--MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS----SDVFELFHNLCLLAYG------ 288
S LD+ S V++ ++ A E T+V + H+ S +DV F ++ G
Sbjct: 555 SALDT-ESEAVVQAALDKAREGRTTIVIA-HRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 289 --KTIYF 293
K IYF
Sbjct: 613 REKGIYF 619
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 32/233 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLL-------DALAGRLSSNTEQTGEILINGRKE 139
+LQ L+ V+ GQ LA++G SGCGKST++ D +AG + + ++ ++ + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
L V+QE L ++ E + Y ++++ + + R+ K I L D
Sbjct: 1108 QLGI-----VSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+TR+G + +SGGQK+R++I ++ +P +L LDE TS LD+ S V++ ++ A
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEALDKA 1217
Query: 258 HEDGITVVASIHQPS----SDVFELFHNLCLLAYG--------KTIYFGPASM 298
E G T + H+ S +D+ + N + +G K IYF S+
Sbjct: 1218 RE-GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV 1269
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKST-------LLDAL 118
L +K++ PS K+ IL+ L V+ GQ +A++G SGCGKST L D L
Sbjct: 388 LEFKNIHFSYPSRKEVQ----ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 119 AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
G +S + + I + +E + V+QE L T T+ E + Y + D +
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGV-----VSQEPVLFAT-TIAENIRYGREDVTMDEIE 497
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238
++ K A I M L DT +G + +SGGQK+R++I ++ PK+L LDE T
Sbjct: 498 KAVKEANAYDFI--MKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS----SDVFELFHNLCLLAYG------ 288
S LD+ S V++ ++ A E T+V + H+ S +DV F ++ G
Sbjct: 555 SALDT-ESEAVVQAALDKAREGRTTIVIA-HRLSTVRNADVIAGFDGGVIVEQGNHDELM 612
Query: 289 --KTIYF 293
K IYF
Sbjct: 613 REKGIYF 619
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 32/233 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLL-------DALAGRLSSNTEQTGEILINGRKE 139
+LQ L+ V+ GQ LA++G SGCGKST++ D +AG + + ++ ++ + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
L V+QE L ++ E + Y ++++ + + R+ K I L D
Sbjct: 1108 QLGI-----VSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+TR+G + +SGGQK+R++I ++ +P +L LDE TS LD+ S V++ ++ A
Sbjct: 1160 KYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDT-ESEKVVQEALDKA 1217
Query: 258 HEDGITVVASIHQPS----SDVFELFHNLCLLAYG--------KTIYFGPASM 298
E G T + H+ S +D+ + N + +G K IYF S+
Sbjct: 1218 RE-GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV 1269
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+ Q+L + G ILA++G +GCGKSTLLD L G I G+ E + +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---------IQGKIEV--YQSI 68
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+V Q + +V++ V + + +S + A + + L T +
Sbjct: 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-----THLAK 123
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++ + I I + KL+ LDEPTS LD A V+ +++LA +TVV
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 266 ASIHQPSSDV 275
+ HQP+ V
Sbjct: 184 FTTHQPNQVV 193
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQED- 153
+E G+ I+GPSG GK+T + +AG + TGE+ + R +A V ED
Sbjct: 28 IENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDR--LVASNGKLIVPPEDR 82
Query: 154 ---------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
L LT E + + MS+ E R+R E + + + ++
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN---- 135
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
R +SGGQ++RV++ ++ P LL LDEP S LD+ + + G+T+
Sbjct: 136 -HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ H P +D+F + + +L GK + G
Sbjct: 195 LVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAG-------RLSSNTEQTGEILINGRKETLAFGTSA 147
++ G+ +A++GPSG GKSTLL +AG ++ + + E+ R L F
Sbjct: 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF---- 81
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
Q L +TV + + + +L R RE + +RE+ +D + +
Sbjct: 82 ---QNWALYPHMTVYKNIAFPLEL-------RKAPREEIDKKVREVAKMLHIDKLLNRYP 131
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
+ +SGGQ++RV+I ++ P++L LDEP S LD+ V + L E GIT V
Sbjct: 132 WQ-LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 268 IHQPSSDVFELFHNLCLLAYGKTIYFG 294
H ++ + + ++ G+ + G
Sbjct: 191 THD-QAEALAMADRIAVIREGEILQVG 216
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQED- 153
+E G+ I+GPSG GK+T + +AG + TGE+ + R +A V ED
Sbjct: 28 IENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDR--LVASNGKLIVPPEDR 82
Query: 154 ---------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
L LT E + + MS+ E R+R E + + + ++
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN---- 135
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
R +SG Q++RV++ ++ P LL LDEP S LD+ + + G+T+
Sbjct: 136 -HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ H P +D+F + + +L GK + G
Sbjct: 195 LVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 107/218 (49%), Gaps = 19/218 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS- 146
L L+ VE G+ I+GP+G GK+ L+ +AG + +G IL++G+ T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKH 72
Query: 147 --AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
A+V Q +L + V + + + + M + + +R T R++ ++ +D
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMR------MKKIKDPKRVLDTARDLKIEHLLDR--- 123
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
N +SGG+++RV++ ++T PK+L LDEP S LD + + + L ++ +TV
Sbjct: 124 --NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFG-PASMTEQ 301
+ H ++ + + ++ GK I G P + E+
Sbjct: 182 LHITHD-QTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 31/246 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L +++ ++PG+IL I+G SGCGK+TLL LAG +GEI ++G K + T+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG---FEQPDSGEISLSG-KTIFSKNTN 74
Query: 147 --------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR-SEKRERAEMTIREMGLQD 197
Y+ QE L LTV + Y L + R +++R+R E + G+ +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAMLELTGISE 130
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ G +SGGQ++R ++ + P+L+ LDEP S LD + + ++
Sbjct: 131 -----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 258 HEDGITVVASIHQPSSDVFELFHNLCLLAYGKT--------IYFGPASMTEQLFASNGFP 309
+G + V H + + + ++ G+ +Y PA + LF G
Sbjct: 186 RANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIV 244
Query: 310 CPSLRN 315
P+ N
Sbjct: 245 FPAALN 250
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 19/191 (9%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------ 141
L ++ +V GQI ++G SG GKSTL+ + L TE G +L++G++ T
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTLSESEL 77
Query: 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
A + Q L+++ TV V +L D+ + E + R + +GL D
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKH 134
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D+ +SGGQK+RV+I + + PK+L DE TS LD A + +++ + ++
Sbjct: 135 DSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 260 DGITVVASIHQ 270
G+T++ H+
Sbjct: 190 LGLTILLITHE 200
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN----GRKETLAF 143
+++L+ ++ G+ L ++GPSGCGK+T L +AG L T G+I I E F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTR--GQIYIEDNLVADPEKGVF 78
Query: 144 -----GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
A V Q L TV + + + +L+ + + E +R +GL +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTEL 135
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
++ + R +SGGQ++RV++ I+ RPK+ DEP S LD+ + L
Sbjct: 136 LNRK-----PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 259 EDGITVVASIH 269
+ G+T + H
Sbjct: 191 QLGVTTIYVTH 201
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 94/188 (50%), Gaps = 14/188 (7%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT--GEILINGRKETLAFGT 145
++E++ V+ G+ + ++GPSGCGK+T L +AG + Q G+ L+ ++ +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 146 S----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
A V Q L +TV + + + +L+ + R E +R +GL + ++
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+ R +SGGQ++RV++ I+ +P++ +DEP S LD+ + + L + G
Sbjct: 136 K-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 262 ITVVASIH 269
+T + H
Sbjct: 191 VTTIYVTH 198
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--KETL--A 142
IL+++ +E G+ +A +G SG GKSTL++ L R T +G+ILI+G K+ L +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYDVT--SGQILIDGHNIKDFLTGS 412
Query: 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
+ Q+D ++ + TV E + + + + K A I M L DT
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTE 470
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD----------------SAAS 246
+G V+ +SGGQK+R+SI L P +L LDE TS LD +
Sbjct: 471 VGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 529
Query: 247 YHVMKRIVNLAHEDGITVVASIH 269
V R+ + H D I V+ + H
Sbjct: 530 LIVAHRLSTITHADKIVVIENGH 552
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 19/191 (9%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------ 141
L ++ +V GQI ++G SG GKSTL+ + L TE G +L++G++ T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTLSESEL 100
Query: 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
A + Q L+++ TV V +L D+ + E + R + +GL D
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D+ +SGGQK+RV+I + + PK+L D+ TS LD A + +++ + ++
Sbjct: 158 DSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 260 DGITVVASIHQ 270
G+T++ H+
Sbjct: 213 LGLTILLITHE 223
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 31/226 (13%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142
++ A++ +++ ++ G+++AI+GP+G GKSTLL L G LS + E
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-----------HGECHL 70
Query: 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM--TIREMGLQDAMD 200
G + Q L T VM YS +L P S+S + RA + LQ M
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQ--YS-ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMA 127
Query: 201 T----RIGGWNVRGVSGGQKRRVSICIEILTR-------PKLLFLDEPTSGLDSAASYHV 249
+ + R +SGG+++RV + +L + P+ LFLDEPTS LD H
Sbjct: 128 QTDCLALAQRDYRVLSGGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHT 186
Query: 250 MKRIVNLAHEDGITVVASIHQPSSDVFELFHN-LCLLAYGKTIYFG 294
++ + L ++ + V +H ++ L+ + + LLA GK + G
Sbjct: 187 LRLLRQLTRQEPLAVCCVLH--DLNLAALYADRIMLLAQGKLVACG 230
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 19/191 (9%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------ 141
L ++ +V GQI ++G SG GKSTL+ + L TE G +L++G++ T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTE--GSVLVDGQELTTLSESEL 100
Query: 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
A + Q L+++ TV V +L D+ + E + R + +GL D
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D+ +SGGQK+RV+I + + PK+L D+ TS LD A + +++ + ++
Sbjct: 158 DSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 260 DGITVVASIHQ 270
G+T++ H+
Sbjct: 213 LGLTILLITHE 223
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--LAFG 144
+L+++ E G+I ++G +G GK+TLL LAG L++ GEI ++G L
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRK 81
Query: 145 TSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
YV Q + + TV E V +S ++ + SE R+R + + +GL + +
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGL-----SGL 133
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE-DGI 262
+ +SGGQK+R++I + + L LDEP S LD + + + + +L +E GI
Sbjct: 134 AAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGI 193
Query: 263 TVVASIHQPSSDVFELFH 280
+V + D+ + H
Sbjct: 194 ILVTHELEYLDDMDFILH 211
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
I Q+ + + G + A++GPSG GKST+L L L +G I ++G R+ +
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVW 446
Query: 144 GTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGLQ 196
S V+QE L + ++ E + Y A P S++ E + AE+ IR
Sbjct: 447 LRSKIGTVSQEPILFSC-SIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRN--FP 501
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+T +G V +SGGQK+R++I +L PK+L LDE TS LD+ Y V + + L
Sbjct: 502 QGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 560
Query: 257 AHEDGITVVASIHQPSS 273
DG TV+ H S+
Sbjct: 561 M--DGRTVLVIAHHLST 575
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
I Q+ + + G + A++GPSG GKST+L L L +G I ++G R+ +
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIRQLNPVW 415
Query: 144 GTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGLQ 196
S V+QE L + ++ E + Y A P S++ E + AE+ IR
Sbjct: 416 LRSKIGTVSQEPILFSC-SIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRN--FP 470
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+T +G V +SGGQK+R++I +L PK+L LDE TS LD+ Y V + + L
Sbjct: 471 QGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
Query: 257 AHEDGITVVASIHQPSS 273
DG TV+ H+ S+
Sbjct: 530 M--DGRTVLVIAHRLST 544
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
L+ KDL V V AIL+ L+ V PG++ AIMGP+G GKSTL LAGR
Sbjct: 20 MLSIKDLHVSV-------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--E 70
Query: 125 NTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184
+ E TG + K+ LA E M +E S Q L +++ + +
Sbjct: 71 DYEVTGGTVEFKGKDLLALSPEDRAG-EGIFMAFQYPVEIPGVSNQFFLQTALN-AVRSY 128
Query: 185 RAEMTIREMGLQDAMDTRIG-----------GWNVRGVSGGQKRRVSICIEILTRPKLLF 233
R + T+ QD M+ +I NV G SGG+K+R I + P+L
Sbjct: 129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPELCI 187
Query: 234 LDEPTSGLDSAA 245
LDE SGLD A
Sbjct: 188 LDESDSGLDIDA 199
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ KDL V V AIL+ L+ V PG++ AIMGP+G GKSTL LAGR +
Sbjct: 2 LSIKDLHVSV-------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--ED 52
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
E TG + K+ LA E M +E S Q L +++ + + R
Sbjct: 53 YEVTGGTVEFKGKDLLALSPEDRAG-EGIFMAFQYPVEIPGVSNQFFLQTALN-AVRSYR 110
Query: 186 AEMTIREMGLQDAMDTRIG-----------GWNVRGVSGGQKRRVSICIEILTRPKLLFL 234
+ T+ QD M+ +I NV G SGG+K+R I + P+L L
Sbjct: 111 GQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPELCIL 169
Query: 235 DEPTSGLDSAA 245
DE SGLD A
Sbjct: 170 DESDSGLDIDA 180
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAF-- 143
IL++++ +P I+A GPSG GKST+ +L R T GEI I+G+ + ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPT--AGEITIDGQPIDNISLEN 73
Query: 144 --GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS-----MSRSEKRERAEMTIREMGLQ 196
+V+Q+ +M T+ E + Y + D + + R E +
Sbjct: 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE------NMP 126
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D ++T +G V+ +SGGQ++R++I L PK+L LDE T+ LDS + V K + +L
Sbjct: 127 DQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293
V+A H L + IYF
Sbjct: 186 MKGRTTLVIA-------------HRLSTIVDADKIYF 209
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------- 136
+L+ + ++ G+++ ++GPSG GKST L L L + ++ GEI+I+G
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDE-GEIIIDGINLKAKDTNL 74
Query: 137 ---RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
R+E V Q L +TV+ + L R RE+AE E+
Sbjct: 75 NKVREEV------GMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMEL 122
Query: 194 ----GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
GL+D +SGGQ +RV+I + PK++ DEPTS LD V
Sbjct: 123 LDKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 177
Query: 250 MKRIVNLAHEDGITVVASIHQ 270
+ + LA+E G+T+V H+
Sbjct: 178 LSVMKQLANE-GMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------- 136
+L+ + ++ G+++ ++GPSG GKST L L L + ++ GEI+I+G
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDE-GEIIIDGINLKAKDTNL 95
Query: 137 ---RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
R+E V Q L +TV+ + L R RE+AE E+
Sbjct: 96 NKVREEV------GMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMEL 143
Query: 194 ----GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
GL+D +SGGQ +RV+I + PK++ DEPTS LD V
Sbjct: 144 LDKVGLKDKAHAY-----PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198
Query: 250 MKRIVNLAHEDGITVVASIHQ 270
+ + LA+E G+T+V H+
Sbjct: 199 LSVMKQLANE-GMTMVVVTHE 218
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RK 138
++K +L+++T +++PGQ +A++GP+G GK+T+++ L + G+IL++G RK
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL---MRFYDVDRGQILVDGIDIRK 421
Query: 139 -ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+ + +S + +DT++ + TV E + Y + + + K ++ I+ L +
Sbjct: 422 IKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKH--LPE 479
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
+T + N +S GQ++ ++I L PK+L LDE TS +D+
Sbjct: 480 GYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----ETLAF 143
LQ+++ V PGQ LA++GPSG GKST+L L +G I I+G+ +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLL---FRFYDISSGCIRIDGQDISQVTQASL 126
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
+ V +DT++ T+ + + Y D + + + I M + T++
Sbjct: 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPEGYRTQV 184
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
G ++ +SGG+K+RV+I IL P ++ LDE TS LD++ + + +
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243
Query: 264 VVASIHQPS----SDVFELFHNLCLLAYGK 289
VVA H+ S +D + + C++ G+
Sbjct: 244 VVA--HRLSTVVNADQILVIKDGCIVERGR 271
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Query: 72 SVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGE 131
+VVV +K K IL+ ++ +E G+I ++GP+G GK+T L ++ + ++ G
Sbjct: 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GI 71
Query: 132 ILINGRKETL----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE 187
+ + G+ +Y+ +E + +E + + A + S SE E E
Sbjct: 72 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVE 128
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
GL + + R+ + S G R++ I ++ P+L LDEPTSGLD +
Sbjct: 129 RATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 183
Query: 248 HVMKRIVNLAHEDGITVVASIH-----QPSSDVFELFHNLCLLAYG 288
V ++I+ A ++G+T++ S H + D L HN ++ G
Sbjct: 184 EV-RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 75
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 133
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + + G
Sbjct: 134 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG 190
Query: 262 ITVVASIHQPSS 273
TV+ H+ S+
Sbjct: 191 RTVIIIAHRLST 202
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 73
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 131
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + + G
Sbjct: 132 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG 188
Query: 262 ITVVASIHQPSS 273
TV+ H+ S+
Sbjct: 189 RTVIIIAHRLST 200
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 79
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 137
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + + G
Sbjct: 138 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG 194
Query: 262 ITVVASIHQPSS 273
TV+ H+ S+
Sbjct: 195 RTVIIIAHRLST 206
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQ 151
+ G+ + +GPSGCGKSTLL +AG T +G++ I ++ A V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L L+V E + + +L + +R + L +D + + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKAL 134
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGGQ++RV+I ++ P + LDEP S LD+A + I L G T++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 272 SSDVFELFHNLCLLAYGKTIYFG 294
+ L + +L G+ G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQ 151
+ G+ + +GPSGCGKSTLL +AG T +G++ I ++ A V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L L+V E + + +L + +R + L +D + + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKAL 134
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGGQ++RV+I ++ P + LDEP S LD+A + I L G T++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 272 SSDVFELFHNLCLLAYGKTIYFG 294
+ L + +L G+ G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 10/186 (5%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 73
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 131
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + +
Sbjct: 132 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT 190
Query: 262 ITVVAS 267
+ ++A+
Sbjct: 191 VIIIAA 196
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 92/186 (49%), Gaps = 10/186 (5%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 79
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 137
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + +
Sbjct: 138 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT 196
Query: 262 ITVVAS 267
+ ++A+
Sbjct: 197 VIIIAA 202
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 16/211 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQ 151
+ G+++ ++GPSG GK+T+L +AG L T+ G++ I G++ T V Q
Sbjct: 38 IREGEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKRNVGLVFQ 94
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L +TV + V + + + + + E R +R M L+ + +
Sbjct: 95 NYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHEL 146
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGGQ++RV++ + RP++L DEP + +D+ + + + E G+T V H
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD- 205
Query: 272 SSDVFELFHNLCLLAYGKTIYFG-PASMTEQ 301
+ E+ + +L G FG P + E+
Sbjct: 206 QEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G +G GKSTL L R + G++LI+G LA
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 75
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 133
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ + + G
Sbjct: 134 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG 190
Query: 262 ITVVASIHQPSS 273
TV+ H+ S+
Sbjct: 191 RTVIIIAHRLST 202
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETLAFGTS 146
L+ ++ + G+ L + G +G GKSTLL +AG + + G++L +G RK+ +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRN 79
Query: 147 ---AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTR 202
A+ ED V + V ++ + PD ++ E +GL D+ R
Sbjct: 80 IGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLVKKAMEF----VGLDFDSFKDR 134
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
+ + +SGG+KRRV+I I+ P +L LDEP GLD ++ RIV G
Sbjct: 135 VPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGK 189
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
TV+ H + V + +L GK ++ G
Sbjct: 190 TVILISHDIET-VINHVDRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETLAFGTS 146
L+ ++ + G+ L + G +G GKSTLL +AG + + G++L +G RK+ +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRN 81
Query: 147 ---AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTR 202
A+ ED V + V ++ + PD ++ E +GL D+ R
Sbjct: 82 IGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLVKKAMEF----VGLDFDSFKDR 136
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
+ + +SGG+KRRV+I I+ P +L LDEP GLD ++ RIV G
Sbjct: 137 VPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGK 191
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
TV+ H + V + +L GK ++ G
Sbjct: 192 TVILISHDIET-VINHVDRVVVLEKGKKVFDG 222
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142
IL + ++ G+++ I+G SG GKSTL L R + G++LI+G LA
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY--IPENGQVLIDGHDLALADPN 79
Query: 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V +D ++ ++++ + + + + + K A I E L++ +T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNT 137
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+G G+SGGQ++R++I ++ PK+L D+ TS LD + + +M+ + + G
Sbjct: 138 IVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC--KG 194
Query: 262 ITVVASIHQPSS 273
TV+ H+ S+
Sbjct: 195 RTVIIIAHRLST 206
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQ 151
+ G+ + +GPSGCGKSTLL +AG T +G++ I ++ A V Q
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L L+V E + + +L + +R + L +D + + +
Sbjct: 83 SYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKAL 134
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGGQ++RV+I ++ P + LD+P S LD+A + I L G T++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 272 SSDVFELFHNLCLLAYGKTIYFG 294
+ L + +L G+ G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 29/235 (12%)
Query: 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
+ ++D+S P+ +LQ LT + PG++ A++GP+G GKST+ AL L
Sbjct: 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQ 70
Query: 125 NTEQTGEILING----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
T G++L++G + + T ++ L+ + E + Y ++R+
Sbjct: 71 PT--GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRT 120
Query: 181 EKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233
E E G D DT +G + +SGGQ++ V++ ++ +P+LL
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLI 179
Query: 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288
LD+ TS LD+ V + + TV+ HQ S + E H++ L G
Sbjct: 180 LDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHHILFLKEG 232
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 25/200 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ +T +E G ++ GP+G GK+TLL ++ L GEI+ NG T G
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKI 80
Query: 147 AYVTQEDTLMTTLTV---MEAV--YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
++ +E + ++V ++AV Y ++ + M E E ++ +++G
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK-KKLG------- 132
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+S G RRV + +L ++ LD+P +D + + V+K I+ + E G
Sbjct: 133 --------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 262 ITVVASIHQPS-SDVFELFH 280
I +++S + S DV E H
Sbjct: 185 IVIISSREELSYCDVNENLH 204
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS---AYVTQ 151
++ G+ L ++GPSGCGK+T L +AG L TE G I R T + V Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTE--GRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+ +TV E + + +++ + E +R + +++ ++ +
Sbjct: 91 SYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----L 142
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGGQ++RV++ I+ P +L +DEP S LD+ + I L + +T + H
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS---AYVTQ 151
++ G+ L ++GPSGCGK+T L +AG L TE G I R T + V Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTE--GRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+ +TV E + + +++ + E +R + +++ ++ +
Sbjct: 92 SYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----L 143
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGGQ++RV++ I+ P +L +DEP S LD+ + I L + +T + H
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA 147
L +T + G ++A++G GCGKS+LL AL L+ + G + I G + A
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIKG--------SVA 69
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
YV Q+ + ++ E + + QL+ P RS + A + E+ L T IG
Sbjct: 70 YVPQQAWIQND-SLRENILFGCQLEEP--YYRSVIQACALLPDLEI-LPSGDRTEIGEKG 125
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
V +SGGQK+RVS+ + + + D+P S +D+ H+ + ++
Sbjct: 126 VN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKST 113
+S + KF GV + + D++ P K+ N H L+ + ++ G A++G +G GKST
Sbjct: 8 TSHEKKF--GVNIEFSDVNFSYP--KQTN--HRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 114 LLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY----VTQEDTLMTTLTVMEAVYYSA 169
+ A L + G+I I G+ S + +DT++ T+ + Y
Sbjct: 62 I----AKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK 117
Query: 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229
+ + ++ K + I L DT +G ++ +SGG+++R++I +L P
Sbjct: 118 LDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDP 174
Query: 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
K++ DE TS LDS Y K + +L + ++A
Sbjct: 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLAFGT 145
L L+G V G+IL ++GP+G GKSTLL AG S + + G+ L LA
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
AY++Q+ T V++ L D + R E+ + ++ A+D ++G
Sbjct: 75 RAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTEL-LNDVAGALALDDKLGR 122
Query: 206 WNVRGVSGGQKRRVSICIEIL-----TRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ +SGG+ +RV + +L P +LL LDEP + LD A + +I++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALS 180
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ G+ +V S H + H LL GK + G
Sbjct: 181 QQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 27/198 (13%)
Query: 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
+ ++D+S P+ +LQ LT + PG++ A++GP+G GKST+ AL L
Sbjct: 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTV-AALLQNLYQ 70
Query: 125 NTEQTGEILING----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
T G++L++G + + T ++ L+ + E + Y ++R+
Sbjct: 71 PT--GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRT 120
Query: 181 EKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233
E E G D DT +G + +SGGQ++ V++ ++ +P+LL
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLI 179
Query: 234 LDEPTSGLDSAASYHVMK 251
LD TS LD+ V +
Sbjct: 180 LDNATSALDAGNQLRVQR 197
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q L + +TV+E V A +Q+ +S+ + RERA + ++G+ D R G
Sbjct: 98 VFQHFNLWSHMTVLENVM-EAPIQVL-GLSKHDARERALKYLAKVGI----DERAQGKYP 151
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASI 268
+SGGQ++RVSI + P +L DEPTS LD V++ + LA E+G T+V
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVT 210
Query: 269 HQ 270
H+
Sbjct: 211 HE 212
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLAFGT 145
L L+G V G+IL ++GP+G GKSTLL AG S + + G+ L LA
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
AY++Q+ T V++ L D + R E+ + ++ A+D ++G
Sbjct: 75 RAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTEL-LNDVAGALALDDKLGR 122
Query: 206 WNVRGVSGGQKRRVSICIEIL-----TRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ +SGG+ +RV + +L P +LL LDEP + LD A + +I++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALC 180
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ G+ +V S H + H LL GK + G
Sbjct: 181 QQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRL---SSNTEQTGEILINGRKETLAFGTSAYVTQ 151
V+PG ++A++G +G GKSTL++ L RL + E+ + K G + V Q
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMN-LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI--GGWNVR 209
E L + T+ E + + + D + + K + I + L + D+R+ GG R
Sbjct: 425 ETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI--ISLPEGYDSRVERGG---R 478
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
SGGQK+R+SI ++ +PK+L LD+ TS +D ++
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLAFGT 145
L L+G V G+IL ++GP+G GKSTLL +AG S + + G+ L LA
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
AY++Q+ T V++ L D + R E+ + ++ A+D ++G
Sbjct: 75 RAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTEL-LNDVAGALALDDKLGR 122
Query: 206 WNVRGVSGGQKRRVSICIEIL-----TRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ +SGG+ +RV + +L P +LL LD+P + LD A + +I++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALS 180
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ G+ +V S H + H LL GK + G
Sbjct: 181 QQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 100 ILAIMGPSGCGKSTLLDALA------GR-LSSNTEQTGEILINGRKETLA---FGTSAYV 149
+ AI+G S GKST+++A+ GR LS G+ L+ R+E L + A V
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 150 TQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
Q + +L T+ V+E + + S SE E+A +R + L + + +
Sbjct: 96 PQAAQQSLNPTMKVIEHFKDTVEAH-GVRWSHSELIEKASEKLRMVRLNP--EAVLNSYP 152
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
++ +SGG K+RV I + +L P +L LDEPTS LD H+++ + L IT++
Sbjct: 153 LQ-LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFV 211
Query: 268 IH 269
H
Sbjct: 212 TH 213
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLAFGT 145
L L+G V G+IL ++GP+G GKSTLL +AG S + + G+ L LA
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL-H 74
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
AY++Q+ T V++ L D + R E+ + ++ A+D ++G
Sbjct: 75 RAYLSQQQ----TPPFATPVWHYLTLHQHD-------KTRTEL-LNDVAGALALDDKLGR 122
Query: 206 WNVRGVSGGQKRRVSICIEIL-----TRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ +SGG+ +RV + +L P +LL LD+P LD A + +I++
Sbjct: 123 -STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKILSALS 180
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ G+ +V S H + H LL GK + G
Sbjct: 181 QQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+T KDL+ G +AIL+ ++ + PGQ + ++G +G GKSTLL A L N
Sbjct: 20 MTVKDLTAKYTEGG-----NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N 72
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVY-YSAQLQLPDSMSRSEKRE 184
TE GEI I+G + +T E + + V+ +S + + + +
Sbjct: 73 TE--GEIQIDGV-------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSG------GQKRRVSICIEILTRPKLLFLDEPT 238
E+GL+ ++ G + V G G K+ + + +L++ K+L LDEP+
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVA 266
+ LD +Y +++R + A D ++
Sbjct: 184 AHLD-PVTYQIIRRTLKQAFADCTVILC 210
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 21/166 (12%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF- 143
L+ + + G+ +A++G SG GKST+ +L R E GEIL++G R+ TLA
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDE--GEILMDGHDLREYTLASL 415
Query: 144 -GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGLQD 197
A V+Q L TV + Y+ Q SR + E A M I +M +
Sbjct: 416 RNQVALVSQNVHLFND-TVANNIAYARTEQY----SREQIEEAARMAYAMDFINKM--DN 468
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
+DT IG V +SGGQ++R++I +L +L LDE TS LD+
Sbjct: 469 GLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSN----TEQTGEILINGRKETLAFGTSAYVT 150
V+ G ++ I+GP+G GKST + LAG+L N + ++ R L
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
E + ++ + + + ++ + + ++++ + E ++ + L++ ++ I +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI-----QH 158
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+SGG+ +RV+I +L F DEP+S LD + + I L+ E+G +V+ H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-EEGKSVLVVEHD 217
Query: 271 PSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKD 327
+ V + ++ + YG+ +G S + RN + +LR KD
Sbjct: 218 LA--VLDYLSDIIHVVYGEPGVYGIFSQPK-----------GTRNGINEFLRGYLKD 261
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
G ++ G+++ I+GP+G GK+T + LAG + TE E + T AY Q
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG-VEEPTEGKIEWDL----------TVAYKPQY 355
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
TV E + +L + ++E ++ +G+ D D V +S
Sbjct: 356 IKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDR-----EVNELS 403
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
GG+ +RV+I +L + LDEP++ LD V + I +L ++ T + H
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 65 FLTWKDLSVVVPSGKKENRKHA-ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
+ ++D+S P NR +LQ LT + PG++ A++GP+G GKST + AL L
Sbjct: 14 LVQFQDVSFAYP-----NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKST-VAALLQNLY 67
Query: 124 SNTEQTGEILINGR-----KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
T G++L++G+ + A V QE + Y Q + ++
Sbjct: 68 QPT--GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 125
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238
+ + A I GL DT + + +SGGQ++ V++ ++ +P +L LD+ T
Sbjct: 126 AAAVKSGAHSFIS--GLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDAT 182
Query: 239 SGLDSAASYHV 249
S LD+ + V
Sbjct: 183 SALDANSQLQV 193
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
+ ++D+S P+ +LQ LT + PG++ A++GP+G GKST + AL L
Sbjct: 16 LVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQ 70
Query: 125 NTEQTGEILING----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
T G++L++G + + T ++ L+ + E + Y ++R+
Sbjct: 71 PT--GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAY--------GLTRT 120
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVR-GVSG-----GQKRRVSICIEILTRPKLLFL 234
E E G D + G++ G +G GQ++ V++ ++ +P+LL L
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLIL 180
Query: 235 DEPTSGLDSAASYHVMK 251
D TS LD+ V +
Sbjct: 181 DNATSALDAGNQLRVQR 197
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 33/216 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET------LAFGTSAY 148
V GQI+ ++G +G GK+T L A+AG + + Q G+I+ NG+ T + A
Sbjct: 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRXGIAL 85
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI----- 203
V + + LTV E + A R+ E R++ ++ R+
Sbjct: 86 VPEGRRIFPELTVYENLXXGAY-----------NRKDKEGIKRDLEWIFSLFPRLKERLK 134
Query: 204 --GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
GG +SGG+++ ++I + +RPKLL DEP+ GL V + I + E
Sbjct: 135 QLGGT----LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG- 189
Query: 262 ITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
T + + Q + ++ H +L G+ + G AS
Sbjct: 190 -TTILLVEQNALGALKVAHYGYVLETGQIVLEGKAS 224
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK------ETLAFGTSAYVTQEDTLM 156
++GP+G GKS L+ +AG + + GE+ +NG E G +V Q+ L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIG---FVPQDYALF 82
Query: 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216
L+V + Y + ++ R E+ R ++G+ +D + +SGG++
Sbjct: 83 PHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGER 132
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276
+RV++ ++ +P+LL LDEP S +D +M+ + + E + ++ H D+
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH----DLI 188
Query: 277 E---LFHNLCLLAYGKTIYFGPASMTEQLFASNG 307
E L + ++ G+ + G + E A NG
Sbjct: 189 EAAMLADEVAVMLNGRIVEKG--KLKELFSAKNG 220
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 21/171 (12%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKE 139
R+ L+ + + G+ +A++G SG GKST+ +L R E G IL++G R+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTI-ASLITRFYDIDE--GHILMDGHDLREY 410
Query: 140 TLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IRE 192
TLA A V+Q L TV + Y+ + SR + E A M I +
Sbjct: 411 TLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFINK 465
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
M + +DT IG V +SGGQ++R++I +L +L LDE TS LD+
Sbjct: 466 M--DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
G + G+++ I+GP+G GK+T + LAG + TE E + T AY Q
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDL----------TVAYKPQY 425
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
TV E + +L + ++E ++ +G+ D D NV +S
Sbjct: 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDR-----NVEDLS 473
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
GG+ +RV+I +L + LDEP++ LD V + I +L ++ T + H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
V+ G ++ I+GP+G GK+T + LAG+L N + + N + AF + +
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR---AFRGNELQNYFER 170
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM--TIREMGLQDAMDTRIGGWNV---- 208
L + + Q D + ++ K + E+ + E+G + + + NV
Sbjct: 171 LKNG-----EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRE 225
Query: 209 -RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
+SGG+ +RV+I +L + F DEP+S LD V + I LA+E G V+
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 284
Query: 268 IHQPSSDVFELFHNLCLLAYGKTIYFG 294
H + V + ++ + YG+ +G
Sbjct: 285 EHDLA--VLDYLSDVIHVVYGEPGVYG 309
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------- 136
IL+ + V G++ A+MGP+G GKSTL LAG E+ GEIL++G
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-GEILLDGENILELSPDE 76
Query: 137 RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
R F Y + + +T+ + + Q +L + +E + + + L
Sbjct: 77 RARKGLFLAFQYPVE----VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE---LL 129
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
D ++ + + G SGG+K+R I ++ P LDE SGLD A V+ R VN
Sbjct: 130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA-LKVVARGVN 187
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
G + G+++ I+GP+G GK+T + LAG + TE E + T AY Q
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDL----------TVAYKPQY 411
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
TV E + +L + ++E ++ +G+ D D NV +S
Sbjct: 412 IKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDR-----NVEDLS 459
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
GG+ +RV+I +L + LDEP++ LD V + I +L ++ T + H
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 18/207 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
V+ G ++ I+GP+G GK+T + LAG+L N + + N + AF + +
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR---AFRGNELQNYFER 156
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM--TIREMGLQDAMDTRIGGWNV---- 208
L + + Q D + ++ K + E+ + E+G + + + NV
Sbjct: 157 LKNG-----EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRE 211
Query: 209 -RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
+SGG+ +RV+I +L + F DEP+S LD V + I LA+E G V+
Sbjct: 212 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVV 270
Query: 268 IHQPSSDVFELFHNLCLLAYGKTIYFG 294
H + V + ++ + YG+ +G
Sbjct: 271 EHDLA--VLDYLSDVIHVVYGEPGVYG 295
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE----QTGEILINGRKETLAFGT----- 145
V G + I+GP+G GKSTL++ + G L ++ + +I E +G
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 146 SAYVTQEDTLMTTLTVME---------AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ +E T++ L + E +++Y + + M E+A + + L
Sbjct: 90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFLKLS 144
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D + G +SGGQ + V I ++T PK++ +DEP +G+ ++ + ++ L
Sbjct: 145 HLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 257 AHEDGITVVASIHQ 270
+ GIT + H+
Sbjct: 200 KAK-GITFLIIEHR 212
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ-EDTLM 156
G+ + I+GP+G GK+TLL A++G L +G I ING + Y T +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVRKIRNYIRYSTNLPEAYE 85
Query: 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216
+TV + VY +L+ D R+ ++ + L + + R + +S GQ
Sbjct: 86 IGVTVNDIVYLYEELKGLD-------RDLFLEMLKALKLGEEILRR----KLYKLSAGQS 134
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
V + + ++P+++ LDEP +D AA HV+ R + ++GI V
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVD-AARRHVISRYIKEYGKEGILV 181
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTE----QTGEILINGRKETLAFGT-----SAY 148
G + I+GP+G GKSTL++ + G L ++ + +I E +G +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 92
Query: 149 VTQEDTLMTTLTVME---------AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
+E T++ L + E +++Y + + M E+A + + L
Sbjct: 93 PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFLKLSHLY 147
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D + G +SGGQ + V I ++T PK++ +DEP +G+ ++ + ++ L +
Sbjct: 148 DRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 260 DGITVVASIHQ 270
GIT + H+
Sbjct: 203 -GITFLIIEHR 212
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 11/191 (5%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--- 137
+ ++ L ++ + G+ +A++G SG GKST+ + ++ G I ++G
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVR 408
Query: 138 --KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
K T A V+Q L T+ + Y+A+ + R+ M E +
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIE-NM 466
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+DT IG N +SGGQ++RV+I +L +L LDE TS LD+ + + +
Sbjct: 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525
Query: 256 LAHEDGITVVA 266
L + V+A
Sbjct: 526 LQKNKTVLVIA 536
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 29/194 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE----QTGEILINGRKETLAFGT----- 145
V G + I+GP+G GKSTL++ + G L ++ + +I E +G
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 89
Query: 146 SAYVTQEDTLMTTLTVME---------AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ +E T++ L + E +++Y + + M E+A + + L
Sbjct: 90 TPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFLKLS 144
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D + G +SGGQ + V I ++T PK++ +D+P +G+ ++ + ++ L
Sbjct: 145 HLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
Query: 257 AHEDGITVVASIHQ 270
+ GIT + H+
Sbjct: 200 KAK-GITFLIIEHR 212
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 34/236 (14%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FGT 145
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR + F
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGRISFCSQFSW 109
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSA--QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
T ++ ++ ++ E Y S QL + +S+ E+ + + E G+
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFA--EKDNIVLGEGGIT------- 160
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAHEDG 261
+SGGQ+ R+S+ + L LD P LD + + V +A++
Sbjct: 161 -------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 262 ITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL---FASNGFPCPSL 313
I V + + H +D + H G + ++G S + L F+S C S
Sbjct: 214 ILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNLQPDFSSKLMGCDSF 263
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + +S E R R+ E I + +D +
Sbjct: 102 SFCSQNSWIMPG-TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 152 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL---FASNGFPCPSL 313
++ I V + + H +D + H G + ++G S + L F+S C S
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNLRPDFSSKLMGCDSF 262
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + +S E R R+ E I + +D +
Sbjct: 102 SFCSQNSWIMPG-TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 152 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL---FASNGFPCPSL 313
++ I V + + H +D + H G + ++G S + L F+S C S
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNLRPDFSSKLMGCDSF 262
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Query: 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ 151
G + G+I+ I+GP+G GK+T L G ++++ E + K+ L++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-----EGSVTPEKQILSYKPQRIFPN 342
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
D TV + + +++ D++S S E + + L +++ NV +
Sbjct: 343 YDG-----TVQQYLENASK----DALSTSS--WFFEEVTKRLNLHRLLES-----NVNDL 386
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE-DGITVVA---- 266
SGG+ +++ I + L LD+P+S LD Y V K I + E +T +
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446
Query: 267 SIHQPSSDVFELF 279
SIH +D +F
Sbjct: 447 SIHDYIADRIIVF 459
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 21/207 (10%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--FGTSAYVTQEDTLMT 157
IL ++G +G GK+T+L LAG + N + G+ E L G Y ++
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV--GKDEVLKRFRGKEIYNYFKELYSN 84
Query: 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEM--TIREMGLQDAMDTRIGG---WNVRG-- 210
L ++ ++Q + S+ K E+ I E G +D + + WN
Sbjct: 85 ELKIVH------KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+SGG +R+ + +L + D+P+S LD ++ K I L + VV
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV----D 194
Query: 271 PSSDVFELFHNLCLLAYGKTIYFGPAS 297
V + +L + YG++ +G S
Sbjct: 195 HDLIVLDYLTDLIHIIYGESSVYGRVS 221
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 39/226 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 71
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + + +S E R R+ E I + +D +
Sbjct: 72 SFCSQFSWIMPG-TIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 123 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
++ I V + + H +D + H G + ++G S + L
Sbjct: 180 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNL 219
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 39/226 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 83
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + + +S E R R+ E I + +D +
Sbjct: 84 SFCSQFSWIMPG-TIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 134
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 135 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
++ I V + + H +D + H G + ++G S + L
Sbjct: 192 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNL 231
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 42/185 (22%)
Query: 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---TLAFGTSAYVTQE-DTLMTT 158
I GP+GCGKSTL+ A+A NG+ + T + YV + D +
Sbjct: 466 ICGPNGCGKSTLMRAIA---------------NGQVDGFPTQEECRTVYVEHDIDGTHSD 510
Query: 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218
+V++ V+ S +E + + E G D M + +SGG K +
Sbjct: 511 TSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEMI----AMPISALSGGWKMK 556
Query: 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278
+++ +L +L LDEPT+ LD+ + +VN + GIT + H VF
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVN----VAWLVNYLNTCGITSITISH---DSVF-- 607
Query: 279 FHNLC 283
N+C
Sbjct: 608 LDNVC 612
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN-VRGVSGGQKRRVSICIEILT 227
A++ + ++++ + R I E +D I + +RG+SGGQK ++ +
Sbjct: 859 AEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ 918
Query: 228 RPKLLFLDEPTSGLD 242
RP L+ LDEPT+ LD
Sbjct: 919 RPHLIVLDEPTNYLD 933
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 101 LAIMGPSGCGKSTLLDALAGRL 122
+A++GP+G GKSTL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 71
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + +S E R R+ E I + +D +
Sbjct: 72 SFCSQFSWIMPG-TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 121
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 122 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
++ I V + + H +D + H G + ++G S + L
Sbjct: 179 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNL 218
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 42/240 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + + +S E R R+ E I + +D +
Sbjct: 102 SFCSQFSWIMPG-TIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 152
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +S GQ+ ++S+ + L LD P LD + + V +A
Sbjct: 153 VLGEGGIT---LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL---FASNGFPCPSL 313
++ I V + + H +D + H G + ++G S + L F+S C S
Sbjct: 210 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNLQPDFSSKLMGCDSF 263
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 51/248 (20%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSN------TEQTGEILINGRKETLAFGTSAYVT 150
PGQ+L ++G +G GKST L LAG+ N + EI+ R L Y T
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSEL----QNYFT 157
Query: 151 Q--EDTLMTTL------TVMEAVYYSAQLQLPDSMSRSEKR-ERAEMTIREMGLQDAMDT 201
+ ED + + + A+ Q R EK E + I+ + L++ +
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
++ +SGG+ +R +I + + + DEP+S LD +K+ +N A
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD-------VKQRLNAAQ--- 262
Query: 262 ITVVASIHQPSSDVFELFHNLCLL---------AYGKTIYFG----PASMTE--QLFASN 306
++ S+ P+ V + H+L +L YG +G PAS+ E +F
Sbjct: 263 --IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDG 320
Query: 307 GFPCPSLR 314
P +LR
Sbjct: 321 HIPAENLR 328
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ-TGEILINGRK 138
K+ + +L G +IL +MG +G GK+TL+ LAG L + Q ++ ++ +
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKP 419
Query: 139 ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
+ +A V Q + + + Q Q ++ + + D
Sbjct: 420 QKIAPKFPGTVRQ-----LFFKKIRGQFLNPQFQTD--------------VVKPLRIDDI 460
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
+D V+ +SGG+ +RV+I + + + +DEP++ LDS
Sbjct: 461 ID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 37/225 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ + +E G++LAI G +G GK++LL + G L ++ G I +GR
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------V 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM------D 200
++ +Q +M T+ E + + +S E R ++ ++ LQ + D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIF--------GVSYDEYRYKS--VVKACQLQQDITKFAEQD 150
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAH 258
+ G +SGGQ+ R+S+ + L LD P LD V + V +A+
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 259 EDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
+ I V + + H +D + H G + ++G S + L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQ------GSSYFYGTFSELQSL 249
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 37/225 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ + +E G++LAI G +G GK++LL + G L ++ G I +GR
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------V 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM------D 200
++ +Q +M T+ E + + +S E R ++ ++ LQ + D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIF--------GVSYDEYRYKS--VVKACQLQQDITKFAEQD 150
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAH 258
+ G +SGGQ+ R+S+ + L LD P LD V + V +A+
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 259 EDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
+ I V + + H +D + H G + ++G S + L
Sbjct: 211 KTRILVTSKMEHLRKADKILILHQ------GSSYFYGTFSELQSL 249
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 43/240 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L + G+I +GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSGR--------I 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + +S E R R+ E I + +D +
Sbjct: 102 SFCSQFSWIMPG-TIKENII---------GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +S GQ+ ++S+ + L LD P LD + + V +A
Sbjct: 152 VLGEGGIT---LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL---FASNGFPCPSL 313
++ I V + + H +D + H G + ++G S + L F+S C S
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHE------GSSYFYGTFSELQNLQPDFSSKLMGCDSF 262
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FGT 145
+L+ + +E G++LAI G +G GK++LL + G L ++ G I +GR + F
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVSFCSQFSW 109
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
T ++ +++ ++ E Y S K + + I + QD +T +G
Sbjct: 110 IMPGTIKENIISGVSYDEYRYKSVV-----------KACQLQQDITKFAEQD--NTVLGE 156
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAHEDGIT 263
V +SGGQ+ R+S+ + L LD P LD V + V +A++ I
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 264 VVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
V + + H +D + H G + ++G S + L
Sbjct: 216 VTSKMEHLRKADKILILHQ------GSSYFYGTFSELQSL 249
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---TLAFGTSAYVTQE-DTLMTT 158
I GP+GCGKSTL A+A NG+ + T + YV + D +
Sbjct: 466 ICGPNGCGKSTLXRAIA---------------NGQVDGFPTQEECRTVYVEHDIDGTHSD 510
Query: 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218
+V++ V+ S +E + + E G D + +SGG K +
Sbjct: 511 TSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEXIAX----PISALSGGWKXK 556
Query: 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278
+++ +L +L LDEPT+ LD+ + +VN + GIT + H VF
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVN----VAWLVNYLNTCGITSITISH---DSVF-- 607
Query: 279 FHNLC 283
N+C
Sbjct: 608 LDNVC 612
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+RG+SGGQK ++ + RP L+ LDEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 101 LAIMGPSGCGKSTLLDALAGRL 122
+A++GP+G GKSTL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---TLAFGTSAYVTQE-DTLMTT 158
I GP+GCGKSTL A+A NG+ + T + YV + D +
Sbjct: 460 ICGPNGCGKSTLXRAIA---------------NGQVDGFPTQEECRTVYVEHDIDGTHSD 504
Query: 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218
+V++ V+ S +E + + E G D + +SGG K +
Sbjct: 505 TSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEXIAX----PISALSGGWKXK 550
Query: 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278
+++ +L +L LDEPT+ LD+ + +VN + GIT + H VF
Sbjct: 551 LALARAVLRNADILLLDEPTNHLDTVN----VAWLVNYLNTCGITSITISH---DSVF-- 601
Query: 279 FHNLC 283
N+C
Sbjct: 602 LDNVC 606
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+RG+SGGQK ++ + RP L+ LDEPT+ LD
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 101 LAIMGPSGCGKSTLLDALAGRL 122
+A++GP+G GKSTL++ L G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 27/220 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FGT 145
+L+ + +E G++LAI G +G GK++LL + G L ++ G I +GR + F
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVSFCSQFSW 109
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
T ++ ++ ++ E Y S K + + I + QD +T +G
Sbjct: 110 IMPGTIKENIIRGVSYDEYRYKSVV-----------KACQLQQDITKFAEQD--NTVLGE 156
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAHEDGIT 263
V +SGGQ+ R+S+ + L LD P LD V + V +A++ I
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 264 VVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
V + + H +D + H G + ++G S + L
Sbjct: 216 VTSKMEHLRKADKILILHQ------GSSYFYGTFSELQSL 249
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 38/225 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ + +E G++LAI G +G GK++LL + G L ++ G I +GR
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------V 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM------D 200
++ +Q +M T+ E + +S E R ++ ++ LQ + D
Sbjct: 102 SFCSQFSWIMPG-TIKENII---------GVSYDEYRYKS--VVKACQLQQDITKFAEQD 149
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAH 258
+ G +SGGQ+ R+S+ + L LD P LD V + V +A+
Sbjct: 150 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 209
Query: 259 EDGITVVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302
+ I V + + H +D + H G + ++G S + L
Sbjct: 210 KTRILVTSKMEHLRKADKILILHQ------GSSYFYGTFSELQSL 248
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDAL-------AGRLSSNTEQTGEILINGR-- 137
IL++++ + G + G +G GK+TLL+ L +G ++ + G++ +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 138 KETLAFGTSAYVT--QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
++ + F + + + QE + + + A Q D E R A ++ +G
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD----EIRNEAHQLLKLVGX 151
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
IG +S G+K+RV I + +P++L LDEP +GLD A
Sbjct: 152 SAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIA 196
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK---LLFLDEPTSGL 241
RA T+RE+GL R+G +SGG+ +R+ + E+ + + LDEPT+GL
Sbjct: 709 RALDTLREVGLGY---LRLGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGL 764
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQ 270
A + +++V L + G TV+A H+
Sbjct: 765 HPADVERLQRQLVKLV-DAGNTVIAVEHK 792
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-----LA 142
+ EL Y+E G I + GPSG GKS++L L G T++ E GR T +
Sbjct: 156 IDELVDYLE-GFICILAGPSGVGKSSILSRLTGE-ELRTQEVSEKTERGRHTTTGVRLIP 213
Query: 143 FGTSAYV 149
FG ++V
Sbjct: 214 FGKGSFV 220
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-----LA 142
++EL Y++ G+I + G SG GKS+LL+A+ L + E L GR T L
Sbjct: 160 IEELKEYLK-GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK 218
Query: 143 FGTSAYVT 150
F YV
Sbjct: 219 FDFGGYVV 226
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 38 FSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY--- 94
F ALS S P S+L+ +TW+D+ G E+ K LQEL Y
Sbjct: 452 FRWALSQSNP------SALRETVVEVPQVTWEDI------GGLEDVKRE-LQELVQYPVE 498
Query: 95 ---------VEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ P + + GP GCGK+ L A+A +N
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 25/100 (25%)
Query: 38 FSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY--- 94
F ALS S P S+L+ +TW+D+ G E+ K LQEL Y
Sbjct: 452 FRWALSQSNP------SALRETVVEVPQVTWEDI------GGLEDVKRE-LQELVQYPVE 498
Query: 95 ---------VEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ P + + GP GCGK+ L A+A +N
Sbjct: 499 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 211 VSGGQKRRVSICIEILTRPK---LLFLDEPTSGL---DSAASYHVMKRIVNLAHEDGITV 264
+SGG+ +RV + E+ R L LDEPT+GL D A V+ R+V+ +G TV
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD----NGDTV 599
Query: 265 VASIH 269
+ H
Sbjct: 600 LVIEH 604
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 211 VSGGQKRRVSICIEILTRPK---LLFLDEPTSGL---DSAASYHVMKRIVNLAHEDGITV 264
+SGG+ +RV + E+ R L LDEPT+GL D A V+ R+V+ +G TV
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD----NGDTV 901
Query: 265 VASIH 269
+ H
Sbjct: 902 LVIEH 906
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 211 VSGGQKRRVSICIEILTRPK---LLFLDEPTSGL---DSAASYHVMKRIVNLAHEDGITV 264
+SGG+ +RV + E+ R L LDEPT+GL D A V+ R+V+ +G TV
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD----NGDTV 901
Query: 265 VASIH 269
+ H
Sbjct: 902 LVIEH 906
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGY------------VEPGQILAIMGPSGCGKST 113
+TW+D+ G E+ K LQEL Y + P + + GP GCGK+
Sbjct: 12 VTWEDI------GGLEDVKRE-LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTL 64
Query: 114 LLDALAGRLSSN 125
L A+A +N
Sbjct: 65 LAKAIANECQAN 76
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTL 159
+ A++GP+G GKS + DA+ L EQ+ L G+ E + F S + + TL
Sbjct: 26 VTAVVGPNGSGKSNITDAIRWVLG---EQSARSLRGGKMEDIIFAGSDSRKRLNLAEVTL 82
Query: 160 TV 161
T+
Sbjct: 83 TL 84
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G GK+
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G GK+
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G GK+
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G GK+
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G GK+
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163
+G +G GKSTL+D L NT+ GE + + + ++ Y QE + LT++
Sbjct: 48 VGETGLGKSTLMDTLF-----NTKFEGEPATHTQP-GVQLQSNTYDLQESNVRLKLTIVS 101
Query: 164 AVYYSAQLQLPDSM--------SRSEKRERAEMTIREMGLQDAMDTRI 203
V + Q+ DS ++ E + E+ IR + L D+RI
Sbjct: 102 TVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRV-LHTYHDSRI 148
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQEL------TGYVEPGQILAIMGPSGCGKSTLLDALA 119
+ W D++ + G KE K A++ + TG P + + + GP G GKS L A+A
Sbjct: 9 VKWSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 120 GRLSSNT 126
+++T
Sbjct: 67 TEANNST 73
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 57 KSKFDNGV-FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQIL---AIMGPSGCGKS 112
++ +D+GV FL K L + +EN K + L G++L + GP G G++
Sbjct: 9 RTVYDSGVQFLRPKSLDEFI---GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRT 65
Query: 113 TLLDALAGRLSSNTEQT-GEILIN 135
TL +A L +N T G +L+
Sbjct: 66 TLAHIIASELQTNIHVTSGPVLVK 89
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 66 LTWKDLSVVVPSGKKENRKHAIL------QELTGYVEPGQILAIMGPSGCGKSTLLDALA 119
+ W D++ + G KE K A++ TG P + + + GP G GKS L A+A
Sbjct: 131 VKWSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 188
Query: 120 GRLSSNT 126
+++T
Sbjct: 189 TEANNST 195
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 99 QILAIMGPSGCGKSTLLDAL 118
++ AI+GP+G GKS ++DA+
Sbjct: 25 RVTAIVGPNGSGKSNIIDAI 44
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSN 125
G IL + PSGCGK+T+ + L + +N
Sbjct: 27 GVILVLSSPSGCGKTTVANKLLEKQKNN 54
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELT--------GYVEPGQILAIMGPSGCGKSTLLDA 117
+TW D+ + +E AIL + G V P +L + GP GCGK+ L A
Sbjct: 7 VTWADIGAL--EDIREELTMAILAPVRNPDQFKALGLVTPAGVL-LAGPPGCGKTLLAKA 63
Query: 118 LA 119
+A
Sbjct: 64 VA 65
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 87 ILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
++Q L GYVE I L GP G GK+ ALA L + I +N E
Sbjct: 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL 133
++ I GP+G GKST LA +L ++ G+I+
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 97 PGQ-ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
PG ++A+ GPSG GKS++ LA +L ++ TG +
Sbjct: 2 PGSMVVAVDGPSGTGKSSVAKELARQLGASYLDTGAM 38
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145
GQ + +GP G GK T LA L TG+IL ++ +A GT
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDIL----RDHVARGT 47
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 87 ILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
++Q L GYVE I L GP G GK+ ALA L + I +N E
Sbjct: 25 VIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
P ++ + GP+G GKST L A+ L +NT+ + I E + V Q +
Sbjct: 122 PRGLVLVTGPTGSGKSTTLAAMLDYL-NNTKYHHILTIEDPIEFVHESKKCLVNQREVHR 180
Query: 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRE----RAEMTIREMG 194
TL EA+ SA + PD + E R+ R +T E G
Sbjct: 181 DTLGFSEAL-RSALREDPDIILVGEMRDLETIRLALTAAETG 221
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT 129
EP + L + GP G GK+TL +A L N T
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT 129
EP + L + GP G GK+TL +A L N T
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT 129
EP + L + GP G GK+TL +A L N T
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
++ I GPSG GK TL A+A L + +G I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 182 KRERAEMTIREMGLQDA-MDTRIGG-----WNV----RGVSGGQKRRVSICI-----EIL 226
KR +A + I G D D GG W + RG+SGG++ +SI + E+
Sbjct: 241 KRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAXSLAEVA 300
Query: 227 T-RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277
+ R F+DE S LD+ + + L + + V + + S+ F+
Sbjct: 301 SGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 182 KRERAEMTIREMGLQDA-MDTRIGG-----WNV----RGVSGGQKRRVSICI-----EIL 226
KR +A + I G D D GG W + RG+SGG++ +SI + E+
Sbjct: 241 KRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVA 300
Query: 227 T-RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277
+ R F+DE S LD+ + + L + + V + + S+ F+
Sbjct: 301 SGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With Cytidine-Di-
Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex With
2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex With
2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
++ I GPSG GK TL A+A L + +G I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From E.
Coli Complexed With Dcmp
Length = 227
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
++ I GPSG GK TL A+A L + +G I
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
++ + GPSG GK TL ALA L+ +G I
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGY 94
SS D GVF+T L P+G + R +L E+T Y
Sbjct: 561 SSFLPDEDQGVFMTMVQL----PAGATQERTQKVLNEVTHY 597
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,022,775
Number of Sequences: 62578
Number of extensions: 340520
Number of successful extensions: 1509
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 194
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)