Query 038004
Match_columns 330
No_of_seqs 358 out of 3142
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.5E-62 3.2E-67 431.7 24.9 227 65-323 2-234 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.1E-60 2.3E-65 439.2 25.1 233 65-324 1-241 (339)
3 COG1124 DppF ABC-type dipeptid 100.0 2.1E-60 4.6E-65 425.2 25.1 233 64-325 2-242 (252)
4 COG0444 DppD ABC-type dipeptid 100.0 4.6E-58 1E-62 426.0 26.5 239 65-324 1-253 (316)
5 COG1123 ATPase components of v 100.0 8.8E-58 1.9E-62 451.3 28.9 274 29-325 241-530 (539)
6 COG4172 ABC-type uncharacteriz 100.0 9.3E-58 2E-62 430.8 26.8 269 29-324 244-526 (534)
7 COG1125 OpuBA ABC-type proline 100.0 5.8E-58 1.3E-62 410.7 23.7 230 65-324 1-235 (309)
8 COG1116 TauB ABC-type nitrate/ 100.0 1E-56 2.3E-61 404.3 24.6 206 64-288 2-207 (248)
9 COG1127 Ttg2A ABC-type transpo 100.0 5.2E-56 1.1E-60 395.8 25.1 220 63-299 6-233 (263)
10 COG3842 PotA ABC-type spermidi 100.0 7.4E-56 1.6E-60 421.0 24.9 218 64-299 4-224 (352)
11 COG1136 SalX ABC-type antimicr 100.0 2E-55 4.4E-60 394.7 26.0 210 66-290 2-220 (226)
12 COG1120 FepC ABC-type cobalami 100.0 1.1E-55 2.3E-60 403.8 23.6 237 65-317 2-247 (258)
13 COG3839 MalK ABC-type sugar tr 100.0 5.9E-55 1.3E-59 412.8 27.0 216 65-299 3-221 (338)
14 COG1123 ATPase components of v 100.0 1.2E-54 2.7E-59 429.0 28.1 239 64-324 4-254 (539)
15 COG1118 CysA ABC-type sulfate/ 100.0 3.9E-55 8.5E-60 401.7 21.7 219 64-299 1-225 (345)
16 KOG0061 Transporter, ABC super 100.0 3.1E-54 6.8E-59 441.1 28.6 261 63-326 23-285 (613)
17 COG3638 ABC-type phosphate/pho 100.0 1.9E-54 4E-59 384.9 22.4 222 64-300 2-236 (258)
18 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-53 4.7E-58 407.7 31.4 220 65-299 1-228 (343)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.4E-54 1.4E-58 390.4 25.3 218 64-299 3-225 (254)
20 PRK15079 oligopeptide ABC tran 100.0 1.1E-52 2.4E-57 401.6 32.2 239 63-324 6-261 (331)
21 PRK09473 oppD oligopeptide tra 100.0 1.5E-52 3.3E-57 400.6 32.6 241 63-324 10-261 (330)
22 COG1117 PstB ABC-type phosphat 100.0 7.4E-54 1.6E-58 375.7 21.1 232 63-322 5-245 (253)
23 COG1131 CcmA ABC-type multidru 100.0 5.1E-53 1.1E-57 397.6 27.8 220 65-302 4-227 (293)
24 PRK11308 dppF dipeptide transp 100.0 3.9E-52 8.4E-57 397.4 32.5 237 64-324 4-254 (327)
25 PRK11650 ugpC glycerol-3-phosp 100.0 2.7E-52 5.9E-57 402.4 31.5 217 65-299 3-222 (356)
26 PRK11022 dppD dipeptide transp 100.0 3.5E-52 7.6E-57 397.6 31.9 239 65-324 3-253 (326)
27 PLN03211 ABC transporter G-25; 100.0 3.9E-52 8.5E-57 429.3 32.7 243 83-327 79-322 (659)
28 TIGR03265 PhnT2 putative 2-ami 100.0 5.8E-52 1.3E-56 399.7 31.7 216 65-299 4-222 (353)
29 PRK11432 fbpC ferric transport 100.0 6.4E-52 1.4E-56 399.0 31.5 217 64-299 5-224 (351)
30 COG2884 FtsE Predicted ATPase 100.0 7.8E-53 1.7E-57 363.1 21.0 212 65-295 1-220 (223)
31 PRK10851 sulfate/thiosulfate t 100.0 1.7E-51 3.7E-56 396.5 31.8 220 64-299 1-224 (353)
32 PRK15093 antimicrobial peptide 100.0 2.8E-51 6.1E-56 392.1 31.8 241 65-324 3-258 (330)
33 PRK09452 potA putrescine/sperm 100.0 2.6E-51 5.7E-56 397.6 31.9 218 63-299 12-232 (375)
34 COG4555 NatA ABC-type Na+ tran 100.0 9.8E-53 2.1E-57 365.5 19.3 216 65-299 1-220 (245)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 3E-51 6.5E-56 395.7 31.7 216 65-299 5-226 (362)
36 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-51 8.2E-56 372.9 29.1 214 66-297 1-222 (235)
37 PRK13537 nodulation ABC transp 100.0 2.7E-51 5.7E-56 388.5 29.1 216 64-299 6-225 (306)
38 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-51 2.7E-56 375.3 25.0 217 64-298 2-225 (235)
39 PRK11607 potG putrescine trans 100.0 1.1E-50 2.4E-55 393.7 32.8 218 63-299 17-237 (377)
40 COG4172 ABC-type uncharacteriz 100.0 1E-51 2.2E-56 389.9 24.3 241 63-324 4-257 (534)
41 PRK11000 maltose/maltodextrin 100.0 1.9E-50 4.1E-55 391.6 31.2 216 65-299 3-221 (369)
42 PRK11153 metN DL-methionine tr 100.0 2.2E-50 4.7E-55 387.8 31.3 220 65-299 1-228 (343)
43 TIGR01186 proV glycine betaine 100.0 2.1E-50 4.5E-55 389.4 29.7 205 83-299 4-217 (363)
44 PRK13536 nodulation factor exp 100.0 2.1E-50 4.6E-55 387.1 29.6 217 63-299 39-259 (340)
45 cd03259 ABC_Carb_Solutes_like 100.0 1.7E-50 3.7E-55 363.2 26.5 210 66-294 1-213 (213)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.3E-50 7.1E-55 363.3 28.0 216 66-296 1-218 (220)
47 COG4175 ProV ABC-type proline/ 100.0 2.8E-51 6.1E-56 377.1 20.9 236 64-324 3-264 (386)
48 cd03296 ABC_CysA_sulfate_impor 100.0 7E-50 1.5E-54 365.6 30.2 217 65-297 2-222 (239)
49 cd03265 ABC_DrrA DrrA is the A 100.0 2.9E-50 6.3E-55 363.6 27.2 213 66-297 1-217 (220)
50 COG4608 AppF ABC-type oligopep 100.0 7.3E-51 1.6E-55 370.7 22.6 205 64-324 3-209 (268)
51 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-50 4.5E-55 415.0 28.2 243 83-326 36-281 (617)
52 TIGR01288 nodI ATP-binding ABC 100.0 6.8E-50 1.5E-54 378.4 29.4 216 64-299 3-222 (303)
53 PRK13637 cbiO cobalt transport 100.0 1.4E-49 3.1E-54 373.4 31.2 221 65-299 2-232 (287)
54 TIGR00960 3a0501s02 Type II (G 100.0 4.5E-50 9.6E-55 361.3 25.7 208 65-290 1-216 (216)
55 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-50 2.9E-55 347.2 20.8 215 66-304 2-219 (231)
56 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-49 2.7E-54 362.3 27.7 218 65-297 1-226 (233)
57 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-49 2.7E-54 357.4 27.3 210 66-294 1-213 (213)
58 COG0411 LivG ABC-type branched 100.0 9.6E-51 2.1E-55 363.3 19.7 220 64-299 3-237 (250)
59 PRK10070 glycine betaine trans 100.0 3.3E-49 7.2E-54 385.2 31.8 223 65-299 4-252 (400)
60 PRK13634 cbiO cobalt transport 100.0 3.4E-49 7.3E-54 371.4 30.4 220 65-299 2-233 (290)
61 cd03219 ABC_Mj1267_LivG_branch 100.0 1.8E-49 3.9E-54 361.7 27.3 216 66-298 1-229 (236)
62 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-49 5.1E-54 368.7 28.4 212 67-297 26-246 (269)
63 TIGR03415 ABC_choXWV_ATP choli 100.0 4.1E-49 9E-54 382.2 30.7 221 66-298 1-251 (382)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-49 2.6E-54 358.7 25.1 209 66-290 1-218 (218)
65 cd03256 ABC_PhnC_transporter A 100.0 2.3E-49 4.9E-54 362.0 27.1 218 66-298 1-231 (241)
66 PRK13647 cbiO cobalt transport 100.0 6E-49 1.3E-53 366.9 30.3 215 65-298 4-224 (274)
67 PRK11831 putative ABC transpor 100.0 4.6E-49 1E-53 366.6 29.4 217 64-298 6-230 (269)
68 TIGR03522 GldA_ABC_ATP gliding 100.0 3.5E-49 7.5E-54 373.2 29.0 214 65-299 2-219 (301)
69 PRK13643 cbiO cobalt transport 100.0 6.2E-49 1.3E-53 369.3 30.5 231 65-311 1-246 (288)
70 PRK11264 putative amino-acid A 100.0 5.4E-49 1.2E-53 361.7 29.4 214 65-297 3-229 (250)
71 PRK13650 cbiO cobalt transport 100.0 5.5E-49 1.2E-53 368.0 29.5 218 65-299 4-227 (279)
72 PRK13651 cobalt transporter AT 100.0 5.9E-49 1.3E-53 372.2 29.7 220 65-299 2-252 (305)
73 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-49 3.6E-54 363.5 25.0 219 65-298 1-232 (243)
74 cd03266 ABC_NatA_sodium_export 100.0 3.4E-49 7.3E-54 355.9 26.6 214 65-294 1-218 (218)
75 cd03218 ABC_YhbG The ABC trans 100.0 4.3E-49 9.4E-54 358.4 27.2 213 66-298 1-219 (232)
76 PRK11629 lolD lipoprotein tran 100.0 9.4E-49 2E-53 356.9 29.4 216 64-295 4-228 (233)
77 cd03260 ABC_PstB_phosphate_tra 100.0 2.6E-49 5.6E-54 358.9 25.5 213 66-297 1-225 (227)
78 PRK13646 cbiO cobalt transport 100.0 6.3E-49 1.4E-53 368.9 29.0 220 65-299 2-233 (286)
79 TIGR01188 drrA daunorubicin re 100.0 3E-49 6.5E-54 373.8 26.7 204 83-299 4-211 (302)
80 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-48 2.4E-53 358.4 29.5 215 66-298 1-222 (242)
81 PRK11248 tauB taurine transpor 100.0 8.7E-49 1.9E-53 362.2 29.1 213 65-296 1-215 (255)
82 cd03263 ABC_subfamily_A The AB 100.0 6E-49 1.3E-53 354.7 26.5 213 66-297 1-217 (220)
83 cd03269 ABC_putative_ATPase Th 100.0 5.5E-49 1.2E-53 352.7 26.0 209 66-294 1-210 (210)
84 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-48 4.1E-53 356.2 29.8 214 65-297 1-221 (240)
85 TIGR03005 ectoine_ehuA ectoine 100.0 1.8E-48 4E-53 358.9 29.8 214 66-297 1-232 (252)
86 PRK13631 cbiO cobalt transport 100.0 2.5E-48 5.5E-53 370.1 31.6 221 63-299 19-263 (320)
87 PRK11247 ssuB aliphatic sulfon 100.0 7.6E-49 1.7E-53 363.0 27.1 209 63-296 10-218 (257)
88 PRK10261 glutathione transport 100.0 1.4E-48 3E-53 401.9 31.9 225 63-298 311-550 (623)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-48 3.7E-53 355.8 28.8 214 65-298 1-218 (236)
90 TIGR02769 nickel_nikE nickel i 100.0 2E-48 4.4E-53 361.5 29.6 223 65-298 2-237 (265)
91 TIGR00972 3a0107s01c2 phosphat 100.0 2.6E-48 5.5E-53 357.0 29.9 215 65-297 1-228 (247)
92 cd03224 ABC_TM1139_LivF_branch 100.0 8E-49 1.7E-53 354.1 26.1 210 66-297 1-217 (222)
93 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-48 2.7E-53 381.5 29.1 219 64-299 2-226 (402)
94 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-48 3.1E-53 352.4 27.5 211 65-291 1-220 (221)
95 PRK13636 cbiO cobalt transport 100.0 3.7E-48 8E-53 363.2 30.3 218 64-299 4-229 (283)
96 cd03268 ABC_BcrA_bacitracin_re 100.0 6.3E-49 1.4E-53 351.8 23.9 205 66-294 1-208 (208)
97 PRK14273 phosphate ABC transpo 100.0 4.1E-48 9E-53 357.0 29.9 231 63-324 5-248 (254)
98 TIGR02673 FtsE cell division A 100.0 1.4E-48 3.1E-53 350.8 25.9 206 65-289 1-214 (214)
99 PRK10619 histidine/lysine/argi 100.0 5.4E-48 1.2E-52 356.9 30.3 215 64-297 4-237 (257)
100 PRK11300 livG leucine/isoleuci 100.0 2.9E-48 6.3E-53 357.9 28.1 219 64-298 4-240 (255)
101 cd03292 ABC_FtsE_transporter F 100.0 1.8E-48 3.9E-53 349.9 25.8 206 66-290 1-214 (214)
102 PRK14268 phosphate ABC transpo 100.0 6.3E-48 1.4E-52 356.8 30.0 234 63-324 10-252 (258)
103 cd03264 ABC_drug_resistance_li 100.0 1.6E-48 3.4E-53 350.0 25.1 207 66-294 1-211 (211)
104 PRK09984 phosphonate/organopho 100.0 3.1E-48 6.7E-53 359.5 27.8 222 64-298 3-239 (262)
105 COG4181 Predicted ABC-type tra 100.0 2.5E-49 5.3E-54 336.4 18.4 213 64-292 5-226 (228)
106 PRK10908 cell division protein 100.0 3.5E-48 7.6E-53 350.5 27.2 208 66-292 2-217 (222)
107 TIGR00956 3a01205 Pleiotropic 100.0 3.5E-48 7.6E-53 426.8 32.5 257 64-325 758-1022(1394)
108 PRK13641 cbiO cobalt transport 100.0 5.7E-48 1.2E-52 362.6 29.0 219 65-299 2-232 (287)
109 PRK11124 artP arginine transpo 100.0 5E-48 1.1E-52 353.8 27.9 214 64-297 1-226 (242)
110 PRK14247 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 353.0 30.3 221 65-297 3-230 (250)
111 PRK10584 putative ABC transpor 100.0 7.4E-48 1.6E-52 349.5 28.2 214 64-293 5-227 (228)
112 PRK14267 phosphate ABC transpo 100.0 1.3E-47 2.9E-52 353.3 30.2 221 65-297 4-233 (253)
113 PRK13652 cbiO cobalt transport 100.0 7.2E-48 1.6E-52 360.1 28.8 217 65-299 3-225 (277)
114 PRK10895 lipopolysaccharide AB 100.0 4.7E-48 1E-52 353.8 27.0 215 65-298 3-223 (241)
115 PRK14242 phosphate transporter 100.0 1.4E-47 3E-52 353.2 30.2 221 63-297 4-233 (253)
116 PRK14250 phosphate ABC transpo 100.0 6.9E-48 1.5E-52 353.1 28.0 209 65-297 3-217 (241)
117 COG1137 YhbG ABC-type (unclass 100.0 6.1E-50 1.3E-54 347.7 13.6 217 65-299 4-226 (243)
118 PRK14256 phosphate ABC transpo 100.0 1.9E-47 4.2E-52 352.1 31.0 220 65-297 4-232 (252)
119 COG0410 LivF ABC-type branched 100.0 1.9E-48 4.1E-53 346.1 23.2 216 64-299 2-224 (237)
120 cd03257 ABC_NikE_OppD_transpor 100.0 6.4E-48 1.4E-52 349.4 27.2 216 65-294 1-228 (228)
121 PRK13548 hmuV hemin importer A 100.0 9.2E-48 2E-52 355.9 28.5 216 65-299 2-228 (258)
122 TIGR03411 urea_trans_UrtD urea 100.0 1E-47 2.2E-52 351.7 28.0 216 65-298 2-228 (242)
123 cd03226 ABC_cobalt_CbiO_domain 100.0 2.3E-48 5E-53 347.6 23.1 202 67-291 1-205 (205)
124 cd03262 ABC_HisP_GlnQ_permease 100.0 4.5E-48 9.8E-53 347.1 24.9 206 66-290 1-213 (213)
125 PRK13635 cbiO cobalt transport 100.0 1.2E-47 2.5E-52 359.2 28.5 218 64-299 4-227 (279)
126 PRK13638 cbiO cobalt transport 100.0 1.1E-47 2.3E-52 357.7 28.1 215 65-299 1-223 (271)
127 PRK10261 glutathione transport 100.0 6.5E-48 1.4E-52 396.9 29.2 222 63-298 10-255 (623)
128 cd03225 ABC_cobalt_CbiO_domain 100.0 4.9E-48 1.1E-52 346.6 24.7 205 67-289 1-211 (211)
129 cd03235 ABC_Metallic_Cations A 100.0 2.3E-48 5E-53 349.4 22.6 210 67-294 1-213 (213)
130 PRK15112 antimicrobial peptide 100.0 1.7E-47 3.6E-52 355.8 29.1 223 64-297 3-235 (267)
131 COG4152 ABC-type uncharacteriz 100.0 7.8E-49 1.7E-53 349.9 19.0 217 65-301 2-219 (300)
132 PRK13639 cbiO cobalt transport 100.0 2.3E-47 5.1E-52 356.3 29.7 216 65-299 1-224 (275)
133 PRK13644 cbiO cobalt transport 100.0 9.8E-48 2.1E-52 358.7 27.1 215 65-299 1-222 (274)
134 PRK10575 iron-hydroxamate tran 100.0 1.3E-47 2.8E-52 356.1 27.7 221 63-299 9-235 (265)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.6E-48 1.9E-52 345.2 25.6 208 66-294 1-211 (211)
136 PRK11614 livF leucine/isoleuci 100.0 1E-47 2.3E-52 350.7 26.3 214 64-299 4-224 (237)
137 PRK13640 cbiO cobalt transport 100.0 1.7E-47 3.7E-52 358.5 28.3 221 64-299 4-230 (282)
138 PRK14269 phosphate ABC transpo 100.0 3.5E-47 7.6E-52 349.3 29.9 220 65-297 2-226 (246)
139 TIGR03410 urea_trans_UrtE urea 100.0 9.3E-48 2E-52 349.3 25.6 212 66-299 1-219 (230)
140 PRK14245 phosphate ABC transpo 100.0 5E-47 1.1E-51 349.0 30.5 220 64-298 2-231 (250)
141 PRK10744 pstB phosphate transp 100.0 4.3E-47 9.4E-52 351.6 30.2 220 64-297 12-240 (260)
142 PLN03140 ABC transporter G fam 100.0 2.1E-47 4.6E-52 420.2 33.0 261 63-325 865-1140(1470)
143 PRK11701 phnK phosphonate C-P 100.0 4.9E-47 1.1E-51 350.7 30.0 216 64-297 5-237 (258)
144 PRK14274 phosphate ABC transpo 100.0 5.7E-47 1.2E-51 350.4 30.4 221 64-298 11-240 (259)
145 PRK11231 fecE iron-dicitrate t 100.0 1.7E-47 3.6E-52 353.3 26.6 218 65-299 2-225 (255)
146 PRK13649 cbiO cobalt transport 100.0 4.7E-47 1E-51 354.9 29.9 219 65-299 2-232 (280)
147 PRK11144 modC molybdate transp 100.0 2.5E-47 5.4E-52 367.8 28.9 206 66-299 2-216 (352)
148 TIGR01277 thiQ thiamine ABC tr 100.0 2.5E-47 5.5E-52 342.9 26.9 209 66-295 1-212 (213)
149 PRK10771 thiQ thiamine transpo 100.0 2.6E-47 5.6E-52 347.2 27.2 213 65-298 1-216 (232)
150 PRK10253 iron-enterobactin tra 100.0 2.7E-47 5.8E-52 354.0 27.7 221 63-299 5-231 (265)
151 TIGR01978 sufC FeS assembly AT 100.0 2.6E-47 5.5E-52 348.8 27.0 216 66-298 1-231 (243)
152 cd03234 ABCG_White The White s 100.0 2.3E-47 4.9E-52 346.2 26.2 221 65-294 3-226 (226)
153 PRK13632 cbiO cobalt transport 100.0 2.9E-47 6.2E-52 354.9 27.6 219 63-299 5-229 (271)
154 PRK14239 phosphate transporter 100.0 8.5E-47 1.8E-51 347.5 30.4 220 64-297 4-232 (252)
155 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-47 2.6E-52 422.6 29.2 243 84-326 73-325 (1394)
156 PRK13648 cbiO cobalt transport 100.0 7.2E-47 1.6E-51 351.8 30.0 219 63-299 5-229 (269)
157 TIGR02142 modC_ABC molybdenum 100.0 2.7E-47 5.8E-52 367.9 28.0 207 70-299 4-219 (354)
158 COG4525 TauB ABC-type taurine 100.0 1.3E-47 2.9E-52 332.0 23.1 221 65-302 3-225 (259)
159 PRK13633 cobalt transporter AT 100.0 3.3E-47 7.2E-52 356.2 27.7 222 64-299 3-231 (280)
160 PRK14235 phosphate transporter 100.0 1.2E-46 2.5E-51 350.1 30.9 222 63-297 17-247 (267)
161 cd03299 ABC_ModC_like Archeal 100.0 1.1E-46 2.4E-51 343.9 30.1 213 66-298 1-216 (235)
162 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-46 2.3E-51 343.3 29.5 213 66-297 1-216 (232)
163 PRK13642 cbiO cobalt transport 100.0 6.9E-47 1.5E-51 353.5 28.6 218 65-299 4-227 (277)
164 COG4598 HisP ABC-type histidin 100.0 2.5E-48 5.4E-53 332.7 17.2 219 64-304 5-241 (256)
165 PRK14240 phosphate transporter 100.0 1.6E-46 3.5E-51 345.4 30.5 219 65-297 3-230 (250)
166 PRK14241 phosphate transporter 100.0 1.3E-46 2.9E-51 347.8 29.9 221 65-298 4-239 (258)
167 PRK13645 cbiO cobalt transport 100.0 6.6E-47 1.4E-51 355.6 27.9 220 65-299 6-238 (289)
168 PRK14248 phosphate ABC transpo 100.0 1.7E-46 3.7E-51 349.0 30.4 221 63-297 19-248 (268)
169 PRK14237 phosphate transporter 100.0 2.6E-46 5.5E-51 347.9 31.5 222 63-298 18-248 (267)
170 PRK14270 phosphate ABC transpo 100.0 1.8E-46 3.8E-51 345.5 29.6 221 64-298 3-232 (251)
171 cd03267 ABC_NatA_like Similar 100.0 5.8E-47 1.3E-51 346.1 26.0 200 83-294 32-236 (236)
172 TIGR03740 galliderm_ABC gallid 100.0 5.9E-47 1.3E-51 342.7 25.7 208 66-297 1-209 (223)
173 TIGR00968 3a0106s01 sulfate AB 100.0 1.3E-46 2.7E-51 344.0 27.9 214 66-298 1-217 (237)
174 PRK14259 phosphate ABC transpo 100.0 1.2E-46 2.7E-51 350.4 28.3 219 63-297 11-249 (269)
175 TIGR03873 F420-0_ABC_ATP propo 100.0 8.6E-47 1.9E-51 348.7 27.0 217 66-299 2-224 (256)
176 PRK14251 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 344.3 30.1 215 65-297 4-231 (251)
177 PRK14272 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 344.3 29.9 222 64-298 3-233 (252)
178 PLN03140 ABC transporter G fam 100.0 1.6E-47 3.4E-52 421.3 25.7 243 84-326 177-452 (1470)
179 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-46 5.1E-51 345.0 29.4 216 64-297 2-234 (253)
180 PRK14261 phosphate ABC transpo 100.0 3.5E-46 7.6E-51 343.9 30.4 220 64-297 5-233 (253)
181 cd03297 ABC_ModC_molybdenum_tr 100.0 9.5E-47 2E-51 339.3 25.9 204 66-294 2-214 (214)
182 PRK14244 phosphate ABC transpo 100.0 2.7E-46 5.9E-51 344.3 29.4 219 66-297 6-233 (251)
183 PRK14262 phosphate ABC transpo 100.0 3.6E-46 7.8E-51 343.1 30.1 220 65-298 3-231 (250)
184 TIGR01184 ntrCD nitrate transp 100.0 6.9E-47 1.5E-51 344.3 24.8 199 88-296 1-199 (230)
185 PRK13549 xylose transporter AT 100.0 8.7E-47 1.9E-51 380.2 27.8 220 64-298 4-229 (506)
186 TIGR02982 heterocyst_DevA ABC 100.0 1.3E-46 2.9E-51 339.9 26.1 211 65-290 1-219 (220)
187 PRK10762 D-ribose transporter 100.0 9.2E-47 2E-51 379.6 27.8 218 64-298 3-227 (501)
188 PRK14253 phosphate ABC transpo 100.0 3.1E-46 6.8E-51 343.4 28.9 219 65-297 3-229 (249)
189 PRK10419 nikE nickel transport 100.0 3.4E-46 7.5E-51 347.2 29.4 223 65-298 3-238 (268)
190 PRK13547 hmuV hemin importer A 100.0 1.2E-46 2.5E-51 351.2 26.2 222 65-299 1-242 (272)
191 PRK14255 phosphate ABC transpo 100.0 6.9E-46 1.5E-50 341.6 30.9 220 64-297 4-232 (252)
192 cd03233 ABC_PDR_domain1 The pl 100.0 1.8E-46 3.8E-51 335.3 25.9 196 65-294 3-202 (202)
193 PRK14249 phosphate ABC transpo 100.0 5.3E-46 1.1E-50 342.4 29.7 220 64-297 3-231 (251)
194 PRK14258 phosphate ABC transpo 100.0 7.6E-46 1.6E-50 343.5 30.5 222 65-298 7-242 (261)
195 PRK14271 phosphate ABC transpo 100.0 7.9E-46 1.7E-50 346.3 30.7 222 63-298 19-248 (276)
196 PRK15134 microcin C ABC transp 100.0 1.9E-46 4.1E-51 379.6 28.5 238 63-324 273-525 (529)
197 PRK09700 D-allose transporter 100.0 1.4E-46 2.9E-51 379.1 27.3 218 64-298 4-231 (510)
198 PRK14260 phosphate ABC transpo 100.0 5.7E-46 1.2E-50 343.9 29.2 221 64-298 6-240 (259)
199 PRK14275 phosphate ABC transpo 100.0 7E-46 1.5E-50 348.3 30.1 218 63-298 37-267 (286)
200 PRK14238 phosphate transporter 100.0 7.8E-46 1.7E-50 345.4 29.8 221 63-297 22-251 (271)
201 PRK14243 phosphate transporter 100.0 5.8E-46 1.3E-50 344.9 28.7 219 63-297 8-244 (264)
202 PRK10418 nikD nickel transport 100.0 7.9E-46 1.7E-50 342.0 29.4 215 65-298 4-227 (254)
203 PRK14265 phosphate ABC transpo 100.0 1.2E-45 2.5E-50 344.7 30.0 220 63-298 18-255 (274)
204 PRK15439 autoinducer 2 ABC tra 100.0 3.7E-46 8E-51 375.9 28.6 212 64-299 10-227 (510)
205 PRK14257 phosphate ABC transpo 100.0 1.4E-45 3.1E-50 352.3 31.0 223 63-298 78-310 (329)
206 PRK14254 phosphate ABC transpo 100.0 3.4E-45 7.5E-50 343.4 31.7 219 63-297 37-265 (285)
207 COG4559 ABC-type hemin transpo 100.0 1.8E-46 3.9E-51 328.7 21.3 235 65-317 1-249 (259)
208 PRK14236 phosphate transporter 100.0 3.4E-45 7.3E-50 341.2 30.7 221 63-297 23-252 (272)
209 TIGR03608 L_ocin_972_ABC putat 100.0 4.9E-46 1.1E-50 332.3 23.7 197 68-285 1-206 (206)
210 PRK14266 phosphate ABC transpo 100.0 2.8E-45 6.1E-50 337.2 29.4 220 65-298 3-231 (250)
211 TIGR02633 xylG D-xylose ABC tr 100.0 6.7E-46 1.5E-50 373.1 27.5 220 65-298 1-227 (500)
212 TIGR02770 nickel_nikD nickel i 100.0 1.3E-45 2.9E-50 335.6 26.7 203 87-298 1-212 (230)
213 PRK15134 microcin C ABC transp 100.0 2E-45 4.4E-50 372.1 30.6 225 64-299 4-244 (529)
214 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-45 6.9E-50 337.1 29.1 218 63-297 5-237 (252)
215 PRK11288 araG L-arabinose tran 100.0 1.2E-45 2.5E-50 371.6 28.4 215 64-295 3-223 (501)
216 PRK10247 putative ABC transpor 100.0 7.9E-46 1.7E-50 336.2 24.2 210 63-295 5-221 (225)
217 COG1129 MglA ABC-type sugar tr 100.0 7.3E-46 1.6E-50 364.4 25.8 216 63-295 6-228 (500)
218 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-45 2.9E-50 372.6 28.1 221 63-298 277-514 (520)
219 PRK14263 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 337.7 30.0 219 63-297 6-241 (261)
220 PRK14246 phosphate ABC transpo 100.0 3.1E-45 6.7E-50 338.9 27.9 219 63-297 8-237 (257)
221 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-45 3.4E-50 372.2 27.7 216 66-300 1-257 (520)
222 PRK10982 galactose/methyl gala 100.0 1.3E-45 2.9E-50 370.3 26.5 214 68-298 1-220 (491)
223 COG4167 SapF ABC-type antimicr 100.0 3.2E-46 7E-51 320.6 18.7 238 64-324 3-249 (267)
224 cd03252 ABCC_Hemolysin The ABC 100.0 7.9E-46 1.7E-50 338.1 22.2 210 66-298 1-222 (237)
225 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.3E-45 9.4E-50 331.3 25.6 202 66-294 23-224 (224)
226 PRK14252 phosphate ABC transpo 100.0 1.8E-44 4E-49 334.9 29.8 221 63-297 14-245 (265)
227 PRK15056 manganese/iron transp 100.0 5.7E-45 1.2E-49 339.7 26.4 217 65-298 6-227 (272)
228 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.5E-45 3.2E-50 336.6 21.9 212 66-299 1-224 (238)
229 cd03245 ABCC_bacteriocin_expor 100.0 1.7E-45 3.8E-50 332.1 22.2 207 66-294 3-220 (220)
230 KOG0058 Peptide exporter, ABC 100.0 1.1E-45 2.4E-50 371.0 22.6 216 65-298 465-688 (716)
231 cd03251 ABCC_MsbA MsbA is an e 100.0 1.8E-45 3.9E-50 335.0 22.0 210 66-298 1-222 (234)
232 PRK13543 cytochrome c biogenes 100.0 7.7E-45 1.7E-49 327.3 25.6 202 63-287 9-212 (214)
233 TIGR02324 CP_lyasePhnL phospho 100.0 7.6E-45 1.6E-49 329.0 25.6 209 65-286 1-223 (224)
234 cd03213 ABCG_EPDR ABCG transpo 100.0 7.5E-45 1.6E-49 322.8 24.9 189 64-294 2-194 (194)
235 PRK14264 phosphate ABC transpo 100.0 2.9E-44 6.2E-49 340.3 29.9 224 63-298 43-286 (305)
236 PRK09580 sufC cysteine desulfu 100.0 2.3E-44 5E-49 330.5 27.7 219 65-299 1-233 (248)
237 cd03254 ABCC_Glucan_exporter_l 100.0 3.6E-45 7.7E-50 332.0 22.0 210 65-297 2-222 (229)
238 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-44 2.3E-49 321.3 24.3 189 64-294 2-192 (192)
239 PRK09544 znuC high-affinity zi 100.0 1.2E-44 2.6E-49 333.9 25.5 203 64-299 3-207 (251)
240 PRK13538 cytochrome c biogenes 100.0 9.9E-45 2.1E-49 324.1 24.2 198 65-285 1-202 (204)
241 COG4604 CeuD ABC-type enteroch 100.0 2.2E-46 4.7E-51 324.9 12.9 218 65-299 1-223 (252)
242 PRK13549 xylose transporter AT 100.0 6.2E-45 1.3E-49 366.7 25.4 224 63-299 257-492 (506)
243 PRK03695 vitamin B12-transport 100.0 8.8E-45 1.9E-49 334.1 24.1 198 87-299 11-220 (248)
244 COG4161 ArtP ABC-type arginine 100.0 2.4E-45 5.3E-50 309.6 17.8 214 65-297 2-226 (242)
245 PRK11174 cysteine/glutathione 100.0 6.9E-45 1.5E-49 372.3 24.1 209 65-298 349-569 (588)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-44 3.4E-49 315.0 22.6 169 66-290 1-173 (173)
247 COG2274 SunT ABC-type bacterio 100.0 7.5E-45 1.6E-49 374.7 23.8 212 65-299 471-694 (709)
248 cd03253 ABCC_ATM1_transporter 100.0 9.3E-45 2E-49 330.7 21.7 209 66-298 1-221 (236)
249 PRK13546 teichoic acids export 100.0 1.3E-43 2.7E-48 329.4 29.6 215 64-299 3-230 (264)
250 cd03229 ABC_Class3 This class 100.0 2.3E-44 4.9E-49 315.4 22.7 171 66-289 1-178 (178)
251 PRK09700 D-allose transporter 100.0 1.7E-44 3.8E-49 363.7 25.0 215 63-296 263-493 (510)
252 cd03231 ABC_CcmA_heme_exporter 100.0 2.4E-44 5.2E-49 321.1 22.7 194 66-285 1-198 (201)
253 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.6E-44 7.8E-49 334.7 24.1 210 66-299 3-223 (275)
254 cd03244 ABCC_MRP_domain2 Domai 100.0 3.4E-44 7.3E-49 323.9 22.7 207 66-295 3-220 (221)
255 COG3845 ABC-type uncharacteriz 100.0 3E-44 6.4E-49 347.5 23.8 215 64-295 3-223 (501)
256 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.2E-44 6.9E-49 373.6 25.8 208 65-298 451-670 (686)
257 PRK11176 lipid transporter ATP 100.0 1.6E-44 3.4E-49 369.2 23.0 213 65-299 341-565 (582)
258 PRK13539 cytochrome c biogenes 100.0 5E-44 1.1E-48 320.4 23.0 197 65-287 2-200 (207)
259 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-44 2.8E-49 327.9 19.3 211 63-290 9-226 (226)
260 COG4988 CydD ABC-type transpor 100.0 5.9E-44 1.3E-48 352.2 25.6 213 63-299 318-541 (559)
261 TIGR01257 rim_protein retinal- 100.0 9.5E-44 2.1E-48 395.2 29.5 223 63-303 1935-2161(2272)
262 TIGR02633 xylG D-xylose ABC tr 100.0 5.4E-44 1.2E-48 359.3 25.1 221 63-296 255-487 (500)
263 PRK10938 putative molybdenum t 100.0 4E-44 8.6E-49 359.5 24.0 207 65-299 3-222 (490)
264 PRK10790 putative multidrug tr 100.0 6.9E-44 1.5E-48 365.3 26.1 210 65-299 340-561 (592)
265 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-43 2.9E-48 316.2 24.2 181 66-297 1-190 (200)
266 TIGR01189 ccmA heme ABC export 100.0 7.7E-44 1.7E-48 316.8 22.4 193 66-284 1-197 (198)
267 KOG0055 Multidrug/pheromone ex 100.0 2.8E-44 6.1E-49 378.2 22.2 214 64-299 349-574 (1228)
268 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-43 3E-48 311.5 22.7 171 64-290 3-182 (182)
269 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.7E-44 1E-48 373.6 22.9 210 65-299 477-698 (710)
270 PRK13545 tagH teichoic acids e 100.0 6.2E-43 1.3E-47 347.0 29.3 212 63-299 19-230 (549)
271 cd03247 ABCC_cytochrome_bd The 100.0 1.3E-43 2.9E-48 310.4 21.6 174 66-294 1-178 (178)
272 PRK13540 cytochrome c biogenes 100.0 1.6E-43 3.5E-48 315.4 22.1 193 65-283 1-197 (200)
273 TIGR01257 rim_protein retinal- 100.0 4.1E-43 8.8E-48 390.2 30.2 221 64-303 927-1151(2272)
274 COG1132 MdlB ABC-type multidru 100.0 6.4E-44 1.4E-48 363.9 22.0 215 65-299 328-550 (567)
275 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.4E-43 7.4E-48 314.6 23.9 196 65-295 6-206 (207)
276 TIGR01166 cbiO cobalt transpor 100.0 1.6E-43 3.4E-48 312.7 21.3 176 84-271 4-187 (190)
277 PRK10762 D-ribose transporter 100.0 2.2E-43 4.8E-48 355.1 25.0 214 64-299 256-482 (501)
278 PRK11160 cysteine/glutathione 100.0 1.6E-43 3.5E-48 361.4 24.3 212 64-298 337-559 (574)
279 TIGR03375 type_I_sec_LssB type 100.0 1.4E-43 3E-48 369.2 24.1 213 65-300 463-687 (694)
280 cd03246 ABCC_Protease_Secretio 100.0 2.5E-43 5.4E-48 307.4 21.8 168 66-290 1-173 (173)
281 TIGR03771 anch_rpt_ABC anchore 100.0 1.9E-43 4.1E-48 320.3 21.7 196 93-299 1-199 (223)
282 TIGR00958 3a01208 Conjugate Tr 100.0 1E-43 2.2E-48 370.9 22.9 210 65-298 478-699 (711)
283 COG4148 ModC ABC-type molybdat 100.0 3E-44 6.5E-49 325.8 16.3 196 89-305 15-219 (352)
284 PRK11288 araG L-arabinose tran 100.0 2E-43 4.3E-48 355.4 23.8 214 64-298 256-482 (501)
285 TIGR01187 potA spermidine/putr 100.0 6.4E-43 1.4E-47 333.7 25.6 185 103-299 1-188 (325)
286 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-43 3.9E-48 369.2 23.2 210 65-298 473-694 (708)
287 cd03214 ABC_Iron-Siderophores_ 100.0 2E-43 4.4E-48 309.9 19.5 175 67-294 1-180 (180)
288 cd03250 ABCC_MRP_domain1 Domai 100.0 4.9E-43 1.1E-47 313.0 22.2 196 66-289 1-204 (204)
289 PRK13657 cyclic beta-1,2-gluca 100.0 3.7E-43 7.9E-48 359.7 24.3 211 65-299 334-556 (588)
290 cd03288 ABCC_SUR2 The SUR doma 100.0 8E-43 1.7E-47 322.6 24.2 211 64-298 18-240 (257)
291 KOG0065 Pleiotropic drug resis 100.0 4E-44 8.6E-49 377.1 16.8 255 65-325 787-1050(1391)
292 PRK15439 autoinducer 2 ABC tra 100.0 4.1E-43 8.9E-48 353.8 23.5 214 63-298 266-489 (510)
293 COG4987 CydC ABC-type transpor 100.0 9.8E-44 2.1E-48 346.4 18.0 212 65-299 336-559 (573)
294 PRK15064 ABC transporter ATP-b 100.0 1.5E-42 3.2E-47 351.3 26.8 209 65-298 1-239 (530)
295 TIGR02203 MsbA_lipidA lipid A 100.0 5.2E-43 1.1E-47 357.1 22.9 212 65-298 330-553 (571)
296 PRK10535 macrolide transporter 100.0 4E-42 8.7E-47 355.3 29.7 219 64-299 3-230 (648)
297 TIGR01842 type_I_sec_PrtD type 100.0 8E-43 1.7E-47 354.2 23.3 213 65-299 316-540 (544)
298 KOG0057 Mitochondrial Fe/S clu 100.0 7.8E-43 1.7E-47 340.4 20.0 210 65-299 351-572 (591)
299 cd03290 ABCC_SUR1_N The SUR do 100.0 4.2E-42 9.1E-47 309.9 23.2 200 67-289 2-218 (218)
300 PRK11819 putative ABC transpor 100.0 3.7E-42 8.1E-47 350.2 25.4 208 64-297 5-246 (556)
301 cd03223 ABCD_peroxisomal_ALDP 100.0 3.7E-42 7.9E-47 298.4 21.6 163 66-288 1-163 (166)
302 PRK10938 putative molybdenum t 100.0 2.6E-42 5.7E-47 346.3 23.1 217 63-295 258-486 (490)
303 TIGR02204 MsbA_rel ABC transpo 100.0 3.1E-42 6.7E-47 351.8 24.0 212 65-298 337-560 (576)
304 cd03228 ABCC_MRP_Like The MRP 100.0 2.9E-42 6.3E-47 300.1 20.3 166 66-289 1-171 (171)
305 cd03216 ABC_Carb_Monos_I This 100.0 8.1E-42 1.8E-46 295.4 22.8 156 66-292 1-162 (163)
306 TIGR01846 type_I_sec_HlyB type 100.0 2.5E-42 5.3E-47 359.9 23.1 211 65-298 455-677 (694)
307 COG4107 PhnK ABC-type phosphon 100.0 7.5E-43 1.6E-47 297.7 15.2 228 63-324 4-251 (258)
308 PTZ00265 multidrug resistance 100.0 1.8E-42 3.9E-47 382.4 22.7 217 65-298 1165-1449(1466)
309 COG0396 sufC Cysteine desulfur 100.0 2.3E-41 5E-46 300.1 25.1 231 64-310 2-242 (251)
310 PRK15064 ABC transporter ATP-b 100.0 8.1E-42 1.8E-46 345.9 25.4 206 64-306 318-527 (530)
311 PRK10789 putative multidrug tr 100.0 5E-42 1.1E-46 350.2 24.0 212 65-299 313-536 (569)
312 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.9E-42 1.9E-46 313.9 23.2 199 87-308 9-218 (246)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.1E-41 4.5E-46 317.2 26.0 202 62-299 36-245 (282)
314 TIGR01192 chvA glucan exporter 100.0 1E-41 2.2E-46 348.9 25.9 211 65-299 334-556 (585)
315 PRK10982 galactose/methyl gala 100.0 7E-42 1.5E-46 343.4 23.7 215 63-296 248-475 (491)
316 KOG0055 Multidrug/pheromone ex 100.0 4.1E-42 8.9E-47 361.9 22.2 213 65-299 987-1211(1228)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-41 4.1E-46 344.7 25.9 209 64-298 3-245 (552)
318 COG4619 ABC-type uncharacteriz 100.0 2.9E-43 6.3E-48 298.5 10.2 194 83-290 14-212 (223)
319 PRK15177 Vi polysaccharide exp 100.0 2.7E-41 5.8E-46 304.4 23.2 195 86-305 1-196 (213)
320 PRK13541 cytochrome c biogenes 100.0 2.3E-41 5.1E-46 300.3 22.2 190 66-282 2-192 (195)
321 PRK10522 multidrug transporter 100.0 3.9E-41 8.4E-46 342.1 24.3 206 65-295 322-532 (547)
322 COG4586 ABC-type uncharacteriz 100.0 7.6E-42 1.6E-46 309.4 16.5 225 65-301 3-246 (325)
323 TIGR02868 CydC thiol reductant 100.0 1.1E-41 2.4E-46 344.6 19.2 185 65-271 334-529 (529)
324 PRK13409 putative ATPase RIL; 100.0 9.7E-41 2.1E-45 340.8 25.6 200 63-296 338-537 (590)
325 PLN03232 ABC transporter C fam 100.0 5.8E-41 1.3E-45 372.5 25.1 211 65-299 1234-1456(1495)
326 COG1119 ModF ABC-type molybden 100.0 2.7E-41 5.8E-46 302.7 18.0 219 61-295 27-256 (257)
327 PRK11819 putative ABC transpor 100.0 1.5E-40 3.3E-45 338.4 26.0 204 63-297 322-529 (556)
328 PLN03130 ABC transporter C fam 100.0 7.6E-41 1.6E-45 372.5 25.5 211 65-299 1237-1459(1622)
329 TIGR02857 CydD thiol reductant 100.0 5.8E-41 1.3E-45 339.4 21.8 198 65-285 320-529 (529)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-40 4.4E-45 337.2 25.7 203 63-296 320-526 (552)
331 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-40 3.7E-45 337.9 24.3 209 65-294 337-552 (555)
332 PTZ00243 ABC transporter; Prov 100.0 2.3E-40 5E-45 368.0 25.5 211 65-299 1308-1531(1560)
333 COG4674 Uncharacterized ABC-ty 100.0 6.9E-41 1.5E-45 290.2 16.5 218 64-299 4-233 (249)
334 PTZ00265 multidrug resistance 100.0 2.5E-40 5.3E-45 365.5 24.4 213 65-288 382-655 (1466)
335 TIGR00957 MRP_assoc_pro multi 100.0 2.7E-40 5.9E-45 367.6 24.8 211 65-299 1284-1506(1522)
336 COG4618 ArpD ABC-type protease 100.0 2.2E-40 4.8E-45 320.7 19.9 219 64-302 333-561 (580)
337 PRK11147 ABC transporter ATPas 100.0 7.8E-40 1.7E-44 337.8 24.5 202 63-295 317-522 (635)
338 PRK10636 putative ABC transpor 100.0 1E-39 2.2E-44 336.8 25.3 202 63-299 310-515 (638)
339 COG4136 ABC-type uncharacteriz 100.0 1.4E-40 3E-45 277.6 15.1 194 65-275 2-198 (213)
340 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.3E-40 1.1E-44 303.6 19.7 198 70-294 5-220 (255)
341 COG1101 PhnK ABC-type uncharac 100.0 6.5E-40 1.4E-44 288.0 17.8 218 66-294 2-231 (263)
342 PRK10636 putative ABC transpor 100.0 2.6E-39 5.6E-44 333.8 24.7 205 65-296 1-231 (638)
343 TIGR01271 CFTR_protein cystic 100.0 2.5E-39 5.4E-44 359.1 26.2 211 65-300 1217-1439(1490)
344 COG1134 TagH ABC-type polysacc 100.0 8.4E-39 1.8E-43 286.8 24.6 220 64-304 2-239 (249)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.9E-39 6.2E-44 274.1 20.4 144 66-289 1-144 (144)
346 PLN03073 ABC transporter F fam 100.0 7.9E-39 1.7E-43 332.6 27.5 203 64-298 507-711 (718)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 9.6E-39 2.1E-43 279.7 20.5 154 69-297 4-159 (177)
348 PRK11147 ABC transporter ATPas 100.0 1.7E-38 3.8E-43 327.7 25.2 205 65-297 3-239 (635)
349 TIGR00954 3a01203 Peroxysomal 100.0 9.9E-39 2.1E-43 330.5 22.7 199 65-287 451-653 (659)
350 KOG0056 Heavy metal exporter H 100.0 3E-39 6.4E-44 310.9 14.6 215 65-299 537-759 (790)
351 cd03238 ABC_UvrA The excision 100.0 3.8E-38 8.1E-43 275.7 19.9 156 84-289 7-165 (176)
352 PLN03130 ABC transporter C fam 100.0 8.3E-38 1.8E-42 348.2 24.9 204 65-299 614-826 (1622)
353 PLN03232 ABC transporter C fam 100.0 1.2E-37 2.5E-42 346.2 25.0 205 65-299 614-826 (1495)
354 COG0488 Uup ATPase components 100.0 2E-37 4.4E-42 310.6 20.0 204 64-294 2-232 (530)
355 TIGR00957 MRP_assoc_pro multi 100.0 3.8E-37 8.2E-42 342.5 24.1 209 65-299 636-848 (1522)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.6E-37 2.1E-41 261.5 21.0 151 68-289 2-157 (157)
357 KOG0059 Lipid exporter ABCA1 a 100.0 2E-37 4.4E-42 329.3 20.2 221 64-303 563-789 (885)
358 PRK13409 putative ATPase RIL; 100.0 2.4E-37 5.3E-42 315.9 18.9 180 85-288 87-287 (590)
359 KOG0065 Pleiotropic drug resis 100.0 5.3E-37 1.1E-41 323.5 17.6 241 85-325 128-375 (1391)
360 TIGR01271 CFTR_protein cystic 100.0 4.3E-36 9.4E-41 333.3 24.3 192 85-299 439-634 (1490)
361 PLN03073 ABC transporter F fam 100.0 3E-36 6.5E-41 313.3 18.8 213 63-296 175-426 (718)
362 COG5265 ATM1 ABC-type transpor 100.0 1.3E-36 2.7E-41 289.1 12.9 214 65-298 262-483 (497)
363 COG4133 CcmA ABC-type transpor 100.0 5.6E-36 1.2E-40 258.4 15.2 186 65-272 2-191 (209)
364 cd03270 ABC_UvrA_I The excisio 100.0 5.4E-35 1.2E-39 265.6 21.5 189 84-294 7-226 (226)
365 COG4778 PhnL ABC-type phosphon 100.0 8.6E-36 1.9E-40 253.5 12.9 211 65-287 4-227 (235)
366 PTZ00243 ABC transporter; Prov 100.0 8.1E-35 1.7E-39 323.8 23.8 190 84-299 672-868 (1560)
367 COG4170 SapD ABC-type antimicr 100.0 3E-35 6.6E-40 257.9 12.1 246 65-329 3-266 (330)
368 KOG0054 Multidrug resistance-a 100.0 2.5E-34 5.4E-39 309.0 21.4 245 29-299 1104-1360(1381)
369 KOG0054 Multidrug resistance-a 100.0 3.7E-33 7.9E-38 300.0 22.9 208 63-300 516-730 (1381)
370 PF00005 ABC_tran: ABC transpo 100.0 7.6E-34 1.7E-38 237.2 12.7 132 88-239 1-137 (137)
371 COG0488 Uup ATPase components 100.0 1.1E-32 2.4E-37 276.5 22.0 199 63-295 319-519 (530)
372 cd03271 ABC_UvrA_II The excisi 100.0 2.2E-32 4.7E-37 253.0 19.9 195 85-296 8-261 (261)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 1.8E-32 3.9E-37 244.2 13.8 166 88-287 12-190 (197)
374 COG1129 MglA ABC-type sugar tr 100.0 1.7E-31 3.8E-36 262.9 22.1 213 63-296 261-485 (500)
375 COG4138 BtuD ABC-type cobalami 100.0 4.4E-32 9.4E-37 231.9 6.3 205 65-299 3-219 (248)
376 cd03273 ABC_SMC2_euk Eukaryoti 100.0 6.8E-31 1.5E-35 242.1 10.9 182 98-286 25-242 (251)
377 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.3E-30 4.9E-35 236.9 12.3 185 82-286 12-234 (243)
378 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1E-31 2.2E-36 241.9 2.4 178 83-287 15-204 (212)
379 cd03279 ABC_sbcCD SbcCD and ot 100.0 8.7E-30 1.9E-34 229.3 12.9 191 65-289 5-210 (213)
380 COG3845 ABC-type uncharacteriz 100.0 2.4E-28 5.1E-33 237.1 22.2 221 63-298 255-489 (501)
381 PRK00635 excinuclease ABC subu 100.0 2.5E-28 5.5E-33 268.7 23.4 214 65-299 600-904 (1809)
382 cd03240 ABC_Rad50 The catalyti 100.0 6.2E-29 1.3E-33 222.5 12.9 164 91-287 16-197 (204)
383 COG4178 ABC-type uncharacteriz 100.0 2.9E-28 6.3E-33 244.4 17.7 197 63-286 390-587 (604)
384 PRK00349 uvrA excinuclease ABC 100.0 1.4E-27 3E-32 252.9 22.5 123 159-298 792-924 (943)
385 COG4615 PvdE ABC-type sideroph 100.0 2.9E-29 6.4E-34 237.1 7.9 205 65-295 322-531 (546)
386 KOG0927 Predicted transporter 100.0 6.1E-28 1.3E-32 235.7 14.5 213 65-297 75-305 (614)
387 TIGR00630 uvra excinuclease AB 99.9 3.2E-26 7E-31 242.2 22.1 124 158-298 789-922 (924)
388 KOG0927 Predicted transporter 99.9 1.6E-27 3.5E-32 232.7 10.5 201 63-295 387-590 (614)
389 COG1245 Predicted ATPase, RNas 99.9 2.3E-26 4.9E-31 220.9 16.8 190 64-286 341-530 (591)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.6E-26 7.7E-31 203.8 15.3 170 87-289 11-192 (198)
391 KOG0062 ATPase component of AB 99.9 8.4E-27 1.8E-31 226.6 10.0 200 64-296 79-280 (582)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.1E-26 8.9E-31 209.9 9.6 177 99-287 23-233 (247)
393 KOG0060 Long-chain acyl-CoA tr 99.9 1E-24 2.3E-29 214.5 17.6 204 63-287 431-641 (659)
394 KOG0066 eIF2-interacting prote 99.9 6.1E-25 1.3E-29 210.1 13.0 212 62-307 583-798 (807)
395 KOG2355 Predicted ABC-type tra 99.9 8.6E-24 1.9E-28 185.2 16.6 202 65-293 13-229 (291)
396 KOG0062 ATPase component of AB 99.9 7.1E-24 1.5E-28 206.3 14.3 204 62-295 359-563 (582)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.8E-23 3.8E-28 188.5 14.6 82 207-289 123-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 1.1E-23 2.4E-28 202.5 9.4 170 95-287 97-288 (591)
399 cd03280 ABC_MutS2 MutS2 homolo 99.9 3.4E-23 7.3E-28 184.7 11.5 147 88-295 17-173 (200)
400 KOG0064 Peroxisomal long-chain 99.9 2.1E-22 4.6E-27 196.3 8.6 183 65-272 481-670 (728)
401 cd03239 ABC_SMC_head The struc 99.9 4.6E-21 1E-25 168.1 15.8 74 211-287 95-172 (178)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.9 7.6E-22 1.6E-26 179.0 8.5 153 85-295 17-175 (222)
403 COG2401 ABC-type ATPase fused 99.9 4.5E-21 9.8E-26 182.8 13.6 186 84-291 395-588 (593)
404 cd03283 ABC_MutS-like MutS-lik 99.9 2.9E-21 6.2E-26 172.4 10.7 148 85-286 14-164 (199)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 1.6E-20 3.6E-25 162.0 12.9 75 210-287 77-155 (162)
406 cd03241 ABC_RecN RecN ATPase i 99.8 1.7E-20 3.6E-25 175.4 13.1 76 210-289 170-249 (276)
407 PRK00635 excinuclease ABC subu 99.8 9.2E-20 2E-24 201.6 20.8 127 158-300 1660-1795(1809)
408 KOG0066 eIF2-interacting prote 99.8 7E-22 1.5E-26 189.2 3.4 211 63-293 262-490 (807)
409 COG0178 UvrA Excinuclease ATPa 99.8 2.7E-19 5.9E-24 182.1 18.9 128 158-301 783-919 (935)
410 PRK00349 uvrA excinuclease ABC 99.8 3.4E-19 7.4E-24 189.4 15.9 135 156-299 434-583 (943)
411 cd03243 ABC_MutS_homologs The 99.8 2.7E-20 5.8E-25 166.2 6.0 154 89-296 20-174 (202)
412 TIGR00630 uvra excinuclease AB 99.8 5.5E-19 1.2E-23 187.5 15.8 134 157-299 433-581 (924)
413 cd03242 ABC_RecF RecF is a rec 99.8 4.1E-18 8.9E-23 158.8 17.3 76 209-290 182-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.8 1.1E-18 2.4E-23 156.2 10.1 142 84-279 15-158 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 7.2E-18 1.6E-22 152.3 11.5 154 85-296 18-176 (216)
416 KOG0063 RNAse L inhibitor, ABC 99.7 8.2E-17 1.8E-21 154.3 13.6 179 85-287 349-532 (592)
417 TIGR02858 spore_III_AA stage I 99.7 5.9E-16 1.3E-20 144.1 11.3 134 99-295 112-263 (270)
418 smart00534 MUTSac ATPase domai 99.6 3.2E-16 7E-21 138.1 4.7 70 209-281 60-130 (185)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.6 1.2E-14 2.6E-19 131.0 14.2 129 93-278 22-160 (213)
420 PRK00064 recF recombination pr 99.6 5.6E-14 1.2E-18 136.3 18.8 77 209-290 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.9E-15 4.1E-20 136.2 6.7 88 184-286 121-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.6 4.4E-15 9.6E-20 156.0 7.9 128 91-271 314-445 (771)
423 KOG0063 RNAse L inhibitor, ABC 99.5 2.8E-14 6E-19 137.1 9.3 172 96-287 98-288 (592)
424 cd00820 PEPCK_HprK Phosphoenol 99.5 2.9E-14 6.3E-19 114.3 6.0 73 85-169 2-79 (107)
425 PRK07721 fliI flagellum-specif 99.5 3.5E-13 7.5E-18 133.2 13.5 172 84-296 145-338 (438)
426 PTZ00132 GTP-binding nuclear p 99.5 8.3E-14 1.8E-18 125.1 7.3 48 210-257 150-204 (215)
427 TIGR00634 recN DNA repair prot 99.5 1.6E-13 3.6E-18 140.3 9.9 77 209-289 439-519 (563)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.5 3.2E-13 7E-18 122.4 10.5 133 85-271 18-154 (222)
429 TIGR00618 sbcc exonuclease Sbc 99.4 3.5E-13 7.5E-18 146.9 11.4 81 206-288 946-1036(1042)
430 PHA02562 46 endonuclease subun 99.4 3.1E-13 6.7E-18 137.9 9.2 79 207-290 465-555 (562)
431 PRK10869 recombination and rep 99.4 6.9E-13 1.5E-17 135.2 10.6 75 210-288 430-508 (553)
432 PRK00409 recombination and DNA 99.4 4.9E-13 1.1E-17 140.9 8.4 80 209-292 389-469 (782)
433 cd03286 ABC_MSH6_euk MutS6 hom 99.4 2.1E-12 4.6E-17 116.8 10.6 143 85-279 17-160 (218)
434 cd01128 rho_factor Transcripti 99.4 1.8E-12 3.9E-17 119.5 10.1 180 93-292 11-213 (249)
435 PRK08533 flagellar accessory p 99.3 1.2E-11 2.6E-16 112.9 13.2 148 95-286 21-184 (230)
436 PF13304 AAA_21: AAA domain; P 99.3 2.8E-12 6.1E-17 114.4 8.9 63 208-271 234-299 (303)
437 cd01124 KaiC KaiC is a circadi 99.3 1.2E-11 2.7E-16 107.9 12.1 79 207-286 68-163 (187)
438 PRK03918 chromosome segregatio 99.3 3.5E-12 7.7E-17 136.7 10.4 78 207-287 785-868 (880)
439 PRK13695 putative NTPase; Prov 99.3 6.7E-13 1.5E-17 115.6 3.6 80 209-295 77-158 (174)
440 PRK10246 exonuclease subunit S 99.3 8.3E-12 1.8E-16 135.9 11.1 80 206-287 945-1032(1047)
441 PRK01156 chromosome segregatio 99.3 1.2E-11 2.6E-16 133.1 11.4 78 207-286 798-883 (895)
442 COG0178 UvrA Excinuclease ATPa 99.2 8.8E-11 1.9E-15 120.7 14.3 137 156-300 426-576 (935)
443 PRK13830 conjugal transfer pro 99.2 6.4E-10 1.4E-14 118.4 20.0 69 226-296 650-728 (818)
444 TIGR00606 rad50 rad50. This fa 99.2 3.1E-11 6.8E-16 134.3 9.5 71 208-279 1197-1277(1311)
445 PRK06793 fliI flagellum-specif 99.2 1.1E-10 2.3E-15 115.0 11.4 168 65-294 130-304 (432)
446 TIGR02168 SMC_prok_B chromosom 99.2 2.9E-11 6.2E-16 132.5 8.2 76 207-286 1086-1165(1179)
447 TIGR02788 VirB11 P-type DNA tr 99.2 1.1E-10 2.3E-15 111.1 10.4 141 91-299 137-279 (308)
448 cd01120 RecA-like_NTPases RecA 99.2 9.9E-11 2.2E-15 98.7 8.3 62 210-272 67-138 (165)
449 COG3910 Predicted ATPase [Gene 99.1 7.4E-10 1.6E-14 96.6 13.1 80 207-290 126-206 (233)
450 TIGR02169 SMC_prok_A chromosom 99.1 2E-10 4.3E-15 126.2 8.6 77 207-287 1071-1151(1164)
451 cd01125 repA Hexameric Replica 99.1 5.6E-10 1.2E-14 102.1 10.0 136 98-271 1-159 (239)
452 PRK02224 chromosome segregatio 99.1 4.1E-10 8.9E-15 121.0 9.7 77 208-287 779-868 (880)
453 PRK06067 flagellar accessory p 99.1 2.5E-09 5.4E-14 97.5 13.0 162 87-287 13-187 (234)
454 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.1E-10 4.4E-15 113.3 4.8 51 85-140 19-70 (504)
455 PRK06995 flhF flagellar biosyn 99.0 1.7E-09 3.7E-14 108.0 10.1 173 86-291 244-430 (484)
456 cd01131 PilT Pilus retraction 99.0 3.9E-09 8.4E-14 94.1 10.4 57 220-286 66-122 (198)
457 smart00382 AAA ATPases associa 98.9 6.6E-08 1.4E-12 78.3 15.0 119 97-269 1-124 (148)
458 PRK06315 type III secretion sy 98.9 5E-09 1.1E-13 103.6 8.5 109 84-196 151-277 (442)
459 PRK07196 fliI flagellum-specif 98.9 2.4E-09 5.2E-14 105.6 5.2 87 84-171 142-239 (434)
460 TIGR02655 circ_KaiC circadian 98.8 1.6E-09 3.5E-14 109.1 2.6 165 87-286 9-190 (484)
461 TIGR00611 recf recF protein. A 98.8 8.4E-09 1.8E-13 100.3 6.9 58 210-271 275-341 (365)
462 TIGR03881 KaiC_arch_4 KaiC dom 98.8 4.7E-09 1E-13 95.1 4.8 33 87-119 8-41 (229)
463 cd01130 VirB11-like_ATPase Typ 98.8 9.7E-09 2.1E-13 90.5 6.4 81 87-170 14-98 (186)
464 cd02023 UMPK Uridine monophosp 98.8 7.6E-09 1.6E-13 91.7 5.4 112 100-243 1-113 (198)
465 PRK13891 conjugal transfer pro 98.8 2E-07 4.4E-12 99.9 16.2 54 221-276 680-734 (852)
466 PRK06002 fliI flagellum-specif 98.7 3.5E-08 7.6E-13 97.6 8.6 81 64-154 138-230 (450)
467 COG0419 SbcC ATPase involved i 98.7 4.8E-08 1E-12 105.5 10.3 78 207-287 812-897 (908)
468 PRK05399 DNA mismatch repair p 98.7 2.6E-08 5.7E-13 106.5 8.0 138 86-281 596-738 (854)
469 TIGR01026 fliI_yscN ATPase Fli 98.7 6.8E-08 1.5E-12 95.9 9.6 171 84-296 150-343 (440)
470 PRK14079 recF recombination pr 98.7 4.7E-08 1E-12 94.5 7.9 75 210-293 263-346 (349)
471 TIGR02680 conserved hypothetic 98.6 4.9E-08 1.1E-12 108.9 7.7 61 207-271 1244-1316(1353)
472 PLN03210 Resistant to P. syrin 98.6 1.2E-07 2.6E-12 104.9 10.5 163 91-308 200-365 (1153)
473 TIGR01420 pilT_fam pilus retra 98.6 4.3E-07 9.2E-12 87.7 12.3 44 220-271 187-230 (343)
474 PRK09825 idnK D-gluconate kina 98.5 3.7E-08 8E-13 86.2 2.3 65 97-168 2-70 (176)
475 cd01122 GP4d_helicase GP4d_hel 98.5 5.5E-06 1.2E-10 76.8 16.6 174 85-287 17-228 (271)
476 PRK13898 type IV secretion sys 98.5 5.6E-06 1.2E-10 88.4 18.0 48 224-272 638-686 (800)
477 TIGR00416 sms DNA repair prote 98.4 4.3E-07 9.3E-12 90.8 7.8 63 227-289 169-247 (454)
478 PRK08149 ATP synthase SpaL; Va 98.4 4.5E-07 9.7E-12 89.5 7.2 69 84-153 138-215 (428)
479 TIGR02903 spore_lon_C ATP-depe 98.4 9.5E-07 2E-11 91.5 9.4 111 97-255 174-291 (615)
480 cd01876 YihA_EngB The YihA (En 98.4 1.2E-06 2.7E-11 73.5 7.5 64 184-256 100-169 (170)
481 TIGR00152 dephospho-CoA kinase 98.3 8.1E-07 1.7E-11 78.2 6.1 73 213-288 60-133 (188)
482 TIGR00767 rho transcription te 98.3 8.1E-07 1.8E-11 86.7 6.5 53 65-123 130-193 (415)
483 PF13555 AAA_29: P-loop contai 98.3 6.3E-07 1.4E-11 64.8 4.2 37 88-124 12-49 (62)
484 cd00009 AAA The AAA+ (ATPases 98.3 6.4E-06 1.4E-10 67.2 10.7 55 216-271 72-130 (151)
485 PRK00454 engB GTP-binding prot 98.3 1.6E-05 3.4E-10 69.6 13.3 65 185-258 126-194 (196)
486 PRK13873 conjugal transfer ATP 98.3 3.5E-05 7.7E-10 82.5 18.5 63 225-288 632-703 (811)
487 PF13558 SbcCD_C: Putative exo 98.3 1.8E-06 3.9E-11 67.3 5.8 48 208-255 30-90 (90)
488 PRK07594 type III secretion sy 98.3 1E-06 2.2E-11 87.1 5.1 63 65-137 129-191 (433)
489 cd01136 ATPase_flagellum-secre 98.2 1.5E-06 3.2E-11 83.1 6.0 50 84-137 56-105 (326)
490 cd01121 Sms Sms (bacterial rad 98.2 4.3E-06 9.4E-11 81.5 8.9 62 227-288 157-234 (372)
491 TIGR02546 III_secr_ATP type II 98.2 2.3E-06 4.9E-11 84.8 6.7 75 84-162 132-217 (422)
492 PRK07960 fliI flagellum-specif 98.2 1.8E-06 3.8E-11 85.6 5.8 69 85-154 163-239 (455)
493 PRK01889 GTPase RsgA; Reviewed 98.2 2.3E-06 4.9E-11 83.1 5.9 74 88-165 185-260 (356)
494 TIGR02322 phosphon_PhnN phosph 98.2 5.1E-06 1.1E-10 72.3 7.2 27 98-124 1-27 (179)
495 PRK09270 nucleoside triphospha 98.2 1.9E-06 4.2E-11 78.3 4.7 71 96-170 31-106 (229)
496 PRK09099 type III secretion sy 98.2 2.5E-06 5.4E-11 84.6 5.7 50 84-137 150-199 (441)
497 PLN02796 D-glycerate 3-kinase 98.2 5.3E-07 1.2E-11 86.4 0.9 54 86-139 80-141 (347)
498 PTZ00035 Rad51 protein; Provis 98.2 2.3E-06 5E-11 82.4 5.2 36 87-122 106-142 (337)
499 PRK09862 putative ATP-dependen 98.1 1.9E-06 4E-11 87.0 4.5 62 68-139 187-248 (506)
500 TIGR00235 udk uridine kinase. 98.1 1.2E-06 2.5E-11 78.5 2.7 29 96-124 4-32 (207)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-62 Score=431.72 Aligned_cols=227 Identities=32% Similarity=0.494 Sum_probs=203.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
+|+++||+++| +...+|+|||++|++||+++|+||||||||||||||.||..++ +|+|+++|+...
T Consensus 2 mi~i~~l~K~f-------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF-------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe-------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhh
Confidence 68999999999 4678999999999999999999999999999999999999874 799999997542
Q ss_pred --cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 141 --LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 141 --~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..++++|+|||+..|||++||.||+.++...- .++++++.++++.++|+.+||.+.++. ||.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 12467999999999999999999999875432 246889999999999999999988876 688999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|+++++|||||+|||....++++.++++++ .|+|+|++||++ .++.+++|||++|++|++++.|++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p-- 220 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPP-- 220 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCH--
Confidence 9999999999999999999999999999999999999985 599999999996 699999999999999999999985
Q ss_pred HHHHHHhCCCCCCCCCCChhHHHHh
Q 038004 299 TEQLFASNGFPCPSLRNPSDHYLRT 323 (330)
Q Consensus 299 ~~~~~~~~g~~~~~~~~p~~~~~~~ 323 (330)
.++|. +|+++-++.
T Consensus 221 -~~~f~----------~p~~~R~~~ 234 (240)
T COG1126 221 -EEFFD----------NPKSERTRQ 234 (240)
T ss_pred -HHHhc----------CCCCHHHHH
Confidence 56674 777765544
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=439.24 Aligned_cols=233 Identities=26% Similarity=0.415 Sum_probs=210.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
++++++|++.|... ..+...+|+||||+|++||++||||.||||||||+|||.+|..|+ +|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~--~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT--GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC--CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCCh
Confidence 47899999999642 123467999999999999999999999999999999999999884 7999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++|||+||++.|+...||++|++|++.+. ++++++.++|+.++|+.+||++..++ ||.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 2467999999999999999999999998775 36789999999999999999977765 6789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++||+|||||+|||.+...|+++|+++.++.|.||++|||.+ +.+.++||||+||++|++++.|+
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~- 225 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGT- 225 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEecc-
Confidence 9999999999999999999999999999999999999999999999999999996 69999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 297 SMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.++|. +|.+..++.+
T Consensus 226 --v~~vF~----------~Pk~~~t~~f 241 (339)
T COG1135 226 --VSEVFA----------NPKHAITQEF 241 (339)
T ss_pred --HHHhhc----------CcchHHHHHH
Confidence 667784 8888887766
No 3
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-60 Score=425.22 Aligned_cols=233 Identities=30% Similarity=0.482 Sum_probs=204.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+.+. ...++|++|||+|.+||++||+|+||||||||+++|+|+.+|+ +|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~---~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~ 75 (252)
T COG1124 2 TLLSVRNLSIVYGGGK---FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKK 75 (252)
T ss_pred ceEEEeceEEEecCCc---chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccc
Confidence 4799999999996432 2236999999999999999999999999999999999999984 7999999976532
Q ss_pred ----ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.+++||||| .++|.+||++.|..+...+ ++++ .++++.++|+.|||++.+-++ +|++|||||
T Consensus 76 ~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R----~P~eLSGGQ 146 (252)
T COG1124 76 RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDR----RPHELSGGQ 146 (252)
T ss_pred cchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhc----CchhcChhH
Confidence 246799999998 4999999999998887642 2333 334599999999998776554 578999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+||||||+.+|++||||||||+||+..|.+|+++|.+++++++.|+||||||+ ..+..+||||+||++|++++.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999995 78999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCCChhHHHHhhc
Q 038004 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 296 ~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~ 325 (330)
. .+++ ++|.|+|++.|-
T Consensus 226 ~---~~l~----------~~~~h~ytr~Ll 242 (252)
T COG1124 226 T---EELL----------SHPSHPYTRELL 242 (252)
T ss_pred h---hhhh----------cCCccHHHHHHH
Confidence 4 5556 369999999874
No 4
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-58 Score=426.00 Aligned_cols=239 Identities=28% Similarity=0.423 Sum_probs=208.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-C-CCCCccEEEECCEecc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS-S-NTEQTGEILINGRKET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-~-~~~~~G~I~~~g~~~~-- 140 (330)
+|+++||++.|.... +...+++||||+|++||++||||+|||||||+.++|+|+++ + ....+|+|.|+|+++.
T Consensus 1 lL~v~nL~v~f~~~~---g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDA---GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCC---ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 478999999996432 34679999999999999999999999999999999999997 4 2346799999998641
Q ss_pred -------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 141 -------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSM-SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
.+.+.|+||||+| .|+|.+||.+.+......+. .. .+++..+++.++|+.+||++... ..+.||++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 1235799999998 59999999999988876543 22 45677889999999999986522 23458999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||.||.||+.+|+|||+||||++||+..|.+|+++|++++++.|+++|+||||+ ..+.++||||+||++|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEE
Confidence 9999999999999999999999999999999999999999999999988999999999995 799999999999999999
Q ss_pred EEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 291 IYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 291 v~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
||.|+ +.++|. +|.|+||+.|
T Consensus 233 VE~g~---~~~i~~----------~P~HPYT~~L 253 (316)
T COG0444 233 VEEGP---VEEIFK----------NPKHPYTRGL 253 (316)
T ss_pred EEeCC---HHHHhc----------CCCChHHHHH
Confidence 99999 567884 9999999887
No 5
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.8e-58 Score=451.33 Aligned_cols=274 Identities=27% Similarity=0.370 Sum_probs=229.3
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccc---cCCCCceeEEEEeEEEEecCCcc---c-CCccceEEeeEEEEeCCcEE
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLK---SKFDNGVFLTWKDLSVVVPSGKK---E-NRKHAILQELTGYVEPGQIL 101 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~nl~~~~~~~~~---~-~~~~~iL~~vsl~i~~Gei~ 101 (330)
..-.+-.+|||+.|+++.|.......... ......++++++||++.|..+.. + .+...+++||||+|++||++
T Consensus 241 ~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~l 320 (539)
T COG1123 241 EILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETL 320 (539)
T ss_pred HHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEE
Confidence 44577889999999999886433111100 01114679999999999974321 1 23467999999999999999
Q ss_pred EEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhc
Q 038004 102 AIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 102 ~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~ 172 (330)
||||+||||||||+|+|+|+++|+ +|+|.++|.+.. ..++++++||||| +|+|++||+++|..+...+
T Consensus 321 glVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 321 GLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 999999999999999999999984 699999997621 1235799999998 4999999999999887765
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
.. ....+.++++.++++.+||+.. +.++||++||||||||++|||||+.+|++||||||||+||+..+.+|+++
T Consensus 398 ~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 398 GG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred cc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 43 2356677889999999999853 33347899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhc
Q 038004 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~ 325 (330)
|++++++.|.|+||||||+ +.+..+||||+||++|+||+.|+ ...+| ++|.|+|++.|-
T Consensus 472 l~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~---~~~v~----------~~p~h~Ytr~L~ 530 (539)
T COG1123 472 LKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGP---TEKVF----------ENPQHPYTRKLL 530 (539)
T ss_pred HHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCC---HHHHh----------cCCCChHHHHHH
Confidence 9999999999999999995 79999999999999999999998 56778 499999999884
No 6
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-58 Score=430.81 Aligned_cols=269 Identities=29% Similarity=0.405 Sum_probs=234.6
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccccCCCCceeEEEEeEEEEecCCccc----CCccceEEeeEEEEeCCcEEEEE
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKE----NRKHAILQELTGYVEPGQILAIM 104 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~----~~~~~iL~~vsl~i~~Gei~~Ii 104 (330)
+.=.+-.+|||+.|++|.|.....+.+ .+..++|+.++|.+.|+-+.+. .....++++|||++++||.+|||
T Consensus 244 ~lF~~PqHpYTr~Ll~aeP~g~~~p~~----~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 244 TLFAAPQHPYTRKLLAAEPSGDPPPLP----EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred HHhhCCCChHHHHHHhcCCCCCCCCCC----CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 344667799999999999876553322 2346789999999999754321 12357999999999999999999
Q ss_pred cCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCC
Q 038004 105 GPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 105 G~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~ 174 (330)
|+||||||||-.+|.+|+++ +|+|.|+|+++.. .+++++.|||||+ |.|+|||.+.+..++..+.+
T Consensus 320 GESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~ 395 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395 (534)
T ss_pred ecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC
Confidence 99999999999999999976 5999999997631 1356999999995 99999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~ 254 (330)
..+..++.+++.++|+.+||++.... +||+++|||||||++|||||+.+|++++||||||+||...+.+|+++|+
T Consensus 396 -~ls~~eR~~rv~~aL~EVGLDp~~r~----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 396 -KLSAAERDQRVIEALEEVGLDPATRN----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChhHhh----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 46889999999999999999876544 3789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 255 ~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++++++|.+.+|||||+ ..+..+||+|+||++|+||++|+ +.++|. ||+++||+.|
T Consensus 471 ~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~---~~~if~----------~P~~~YT~~L 526 (534)
T COG4172 471 DLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGP---TEAVFA----------NPQHEYTRAL 526 (534)
T ss_pred HHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCC---HHHHhc----------CCCcHHHHHH
Confidence 99999999999999995 79999999999999999999999 667884 9999999987
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-58 Score=410.69 Aligned_cols=230 Identities=24% Similarity=0.441 Sum_probs=204.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.| +++.+++|+||+|++||+++++|||||||||+||+|.+|+.| ++|+|+++|+++..
T Consensus 1 MI~~~nvsk~y-------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY-------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc-------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC---CCceEEECCeecccCCH
Confidence 47899999998 356799999999999999999999999999999999999998 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.+++||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||++. .+.++||++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 2467999999999999999999998877654 46788999999999999999752 122347899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+||||+.+|++|++||||++|||.++.++.+.+++++++.|+||||+|||+ .++.+++|||++|++|+++.++.|++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~- 222 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDE- 222 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHH-
Confidence 9999999999999999999999999999999999999999999999999996 68999999999999999999999754
Q ss_pred HHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 300 EQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 300 ~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++ .+|+..|.+.+
T Consensus 223 --il----------~~Pan~FV~~f 235 (309)
T COG1125 223 --IL----------ANPANDFVEDF 235 (309)
T ss_pred --HH----------hCccHHHHHHH
Confidence 33 36666666554
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-56 Score=404.27 Aligned_cols=206 Identities=35% Similarity=0.503 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..++++++++.|. ...+|+||||+|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|++.....
T Consensus 2 ~~l~i~~v~~~f~-------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFG-------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPG 71 (248)
T ss_pred ceEEEEeeEEEeC-------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCC
Confidence 3689999999993 368999999999999999999999999999999999999884 799999999876556
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++||||++.|+|.+||.||+.++..... .++++.++++.++|+.+||.++.++ ||++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999887542 4567777899999999999988876 68999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
||+.+|++|+|||||++||..++..+.+.|.++.++.++||++||||+ .++..++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999988899999999996 5888999999999994
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.2e-56 Score=395.76 Aligned_cols=220 Identities=32% Similarity=0.443 Sum_probs=199.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+.+++++|++.| +.+.|++||||+|++||+++|+||||||||||+|+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSF-------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeec-------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhcc
Confidence 5689999999998 5678999999999999999999999999999999999999984 7999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++++|++||...||..+||+||+.|+.+-+. .+++...++.+..-|+.+||....-.+ +|.+||||
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~----~PsELSGG 149 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADL----YPSELSGG 149 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhh----Cchhhcch
Confidence 23579999999999999999999999875442 467888899999999999998773333 57899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|++|++|||||+.+|+||++||||+||||.+...|-++++++.+..|.|+++||||+ ..++.+|||+++|.+|+|++.|
T Consensus 150 M~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999999999999988999999999996 5799999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 229 t~~el 233 (263)
T COG1127 229 TPEEL 233 (263)
T ss_pred CHHHH
Confidence 97654
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-56 Score=420.96 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=198.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++||++.| ++..+|+||||+|++||+++|+||||||||||||+|+|+..|+ +|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y-------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF-------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec-------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCC
Confidence 479999999998 3578999999999999999999999999999999999999884 7999999998743
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.+++|||+..|||+|||+||+.|+++++ ....+++.++++.++|+.++|.++.++ +|++|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 3467999999999999999999999998743 234556788999999999999987766 57899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++||||||.|+||...+.++...|++++++.|.|.|++|||. .+...++|||+||++|+|...|+++++
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999999999999999999999996 589999999999999999999997643
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-55 Score=394.70 Aligned_cols=210 Identities=32% Similarity=0.501 Sum_probs=184.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|..+. ....+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|.++|++...
T Consensus 2 i~~~~v~k~y~~~~---~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG---EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC---cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHH
Confidence 67999999996432 236799999999999999999999999999999999999988 47999999986531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
+++++|||||+..|.|.+||.||+.+++.+.. .......++++++++.+||.+..+++ +|.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~----~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC----CchhcCHHHH
Confidence 23569999999999999999999998876542 22335677889999999998776643 4689999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+.+|++||+||||.+||+.+...|+++|+++.++.|+|||++|||+ .+..+|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999988899999999995 58889999999999994
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-55 Score=403.76 Aligned_cols=237 Identities=32% Similarity=0.448 Sum_probs=203.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|. +|+|+++|+++..
T Consensus 2 ~L~~~~ls~~y~-------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGYG-------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEEC-------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCH
Confidence 589999999993 568999999999999999999999999999999999999984 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..++++||+|.+...+.+||+|.+.++..-+... ....++.++.++++|+.+|+.+..++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 2357999999998888999999999885432211 1124455668999999999999988864 6999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|.|||||+++|++|||||||++||...|.+++++++++++++|+|||+++||+ ..+.++||++++|++|++++.|.+++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcch
Confidence 99999999999999999999999999999999999999988899999999996 58999999999999999999999876
Q ss_pred H--HHHH-HhCCCCCCCCCCCh
Q 038004 299 T--EQLF-ASNGFPCPSLRNPS 317 (330)
Q Consensus 299 ~--~~~~-~~~g~~~~~~~~p~ 317 (330)
+ .+.+ +-||.++....+|.
T Consensus 226 vlT~e~l~~Vygv~~~~~~~~~ 247 (258)
T COG1120 226 VLTEENLREVYGVDADVIEDPD 247 (258)
T ss_pred hcCHHHHHHHhCCceEEEEcCC
Confidence 5 2333 44677765555443
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-55 Score=412.75 Aligned_cols=216 Identities=28% Similarity=0.467 Sum_probs=198.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ...+|++|||+|+.||+++|+||||||||||||+|+||..|+ +|+|.|+|++.+.
T Consensus 3 ~i~l~~v~K~yg-------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSFG-------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEcC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 589999999993 222999999999999999999999999999999999999884 7999999998753
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||+..|||+|||+||+.|+++++ ..++++.+++++++.+.++|.+.++++ |.+|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 2367999999999999999999999998765 356788999999999999999999874 67999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+++|++++||||+|+||...+..+...|++++++.|.|+|++|||. .++..++|||+||++|+|...|++.++
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 99999999999999999999999999999999999988899999999996 589999999999999999999997654
No 14
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-54 Score=428.97 Aligned_cols=239 Identities=31% Similarity=0.471 Sum_probs=212.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEecc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKET-- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~-- 140 (330)
++|+++||++.|.... +...+++||||+|.+||++||+|+|||||||++++|+|++++. ...+|+|.|+|+++.
T Consensus 4 ~lL~V~nL~v~~~~~~---~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDG---GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCC---cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 4899999999996431 3357999999999999999999999999999999999999875 345899999998641
Q ss_pred -------cccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 -------LAFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+.++|+||||+|. |+|-+||.+.+......+.. .+.++.++++.++|+.+||++.... ++||++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 12357999999984 88999999999888776642 3478889999999999999887655 4588999
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||.||+||+++|++||+||||++||+.+|.+|+++|++++++.|+++|+||||+ ..+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999995 6999999999999999999
Q ss_pred EEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 292 YFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 292 ~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|+ +.++|. +|+|+|++.|
T Consensus 235 E~G~---~~~i~~----------~p~hpYT~~L 254 (539)
T COG1123 235 ETGP---TEEILS----------NPQHPYTRGL 254 (539)
T ss_pred EecC---HHHHHh----------ccCCcccHHH
Confidence 9999 567784 9999999887
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-55 Score=401.71 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE---ecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~---~~~ 140 (330)
+.++++|+++.| +...+++|||++|+.||++||+||||||||||||+|+||..|+ +|.|.++|+ +.+
T Consensus 1 m~i~i~~~~~~~-------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~ 70 (345)
T COG1118 1 MSIRINNVKKRF-------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVS 70 (345)
T ss_pred Cceeehhhhhhc-------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchh
Confidence 357889999888 3567899999999999999999999999999999999999884 699999998 433
Q ss_pred c---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 141 L---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 141 ~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
. ..++||||||+..||++|||.+||+|+.+.+ ....++.+.+.++.++|+.+.|++..++ ||.+|||||||
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQ 144 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQ 144 (345)
T ss_pred ccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHH
Confidence 2 2357999999999999999999999998765 2234577889999999999999887665 68999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|+||||+++||...+..+...|+++.++.|.|.++||||+ +++.++||||++|++|+|...|+++
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ 223 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPD 223 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHH
Confidence 999999999999999999999999999999999999999987899999999996 6899999999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 224 ev 225 (345)
T COG1118 224 EV 225 (345)
T ss_pred HH
Confidence 54
No 16
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-54 Score=441.10 Aligned_cols=261 Identities=48% Similarity=0.802 Sum_probs=241.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
...+.|+|+++..+.+.+ ..+++|+|||+++++||++||+|||||||||||++|+|........+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred cceeEEEEEEEEecCCCC--ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 456899999999864321 3578999999999999999999999999999999999999764457899999996543
Q ss_pred cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 141 ~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++.+|||.|++.++|.+||+|+|.|.+.++++...+..+++++|+++++++||.++.|+.+++...+.+||||||||+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence 23466899999999999999999999999999887778899999999999999999999999998777899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
||..|+.+|.+|+|||||||||+.++.++++.|++++++ |+|||++.|+|...+++++|++++|.+|++++.|++.++.
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 999999999999999999999999999999999999977 9999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCChhHHHHhhcc
Q 038004 301 QLFASNGFPCPSLRNPSDHYLRTINK 326 (330)
Q Consensus 301 ~~~~~~g~~~~~~~~p~~~~~~~l~~ 326 (330)
++|...|++||...||+|+|.+.++.
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~ 285 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSV 285 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHcc
Confidence 99999999999999999999998874
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-54 Score=384.86 Aligned_cols=222 Identities=31% Similarity=0.481 Sum_probs=196.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|| +++++|+||||+|++||+++|||+||||||||||+|.|+..+ ++|+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 2 MMIEVKNLSKTYP------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLK 72 (258)
T ss_pred ceEEEeeeeeecC------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccc
Confidence 4799999999997 357899999999999999999999999999999999999887 47999999976532
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
.++++||+||++.|.++++|.+|+..+..-+.+ -++..++.+..+-++|+++|+.+.+..+. .+
T Consensus 73 ~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~ 147 (258)
T COG3638 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----ST 147 (258)
T ss_pred hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----cc
Confidence 135799999999999999999999876432211 12344566778899999999998887764 59
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+|||+|||||+.+|++||+|||+++|||.+..++++.|++++++.|.|+|+..|++ +.+.++|||++-|++|+|
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRI 226 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred EEEcChhhHH
Q 038004 291 IYFGPASMTE 300 (330)
Q Consensus 291 v~~g~~~~~~ 300 (330)
+++|++.++.
T Consensus 227 vfDg~~~el~ 236 (258)
T COG3638 227 VFDGPASELT 236 (258)
T ss_pred EEeCChhhhh
Confidence 9999987653
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-53 Score=407.66 Aligned_cols=220 Identities=25% Similarity=0.404 Sum_probs=193.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~~---~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGT---KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCC---cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 478999999995211 1346999999999999999999999999999999999999874 7999999987632
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++++|+||++.+++.+||.||+.++.... ..+..+.++++.++++.+||.+..++ ++.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 1357999999999999999999999876532 23456677889999999999877665 4679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||++||++ ..+.++||++++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999876799999999996 588899999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 226 ~~v 228 (343)
T TIGR02314 226 SEI 228 (343)
T ss_pred HHH
Confidence 543
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-54 Score=390.37 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
+.++++||++.|. +. ++|+||||+|++|++++|+||||||||||+|+|+|+++|. +|+|.++|++....
T Consensus 3 ~~i~v~nl~v~y~------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccc
Confidence 4799999999993 22 6999999999999999999999999999999999999884 79999999875433
Q ss_pred -cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 143 -FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 143 -~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+||||||... ....+||+|.+..+...+... ....+..++.++++|+++|+.+..++.++ +|||||+||
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 357999999753 334579999998874322110 11233447889999999999999998875 999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|.|||||+.+|++|||||||+|+|+.++..|+++|++++++ |+|||+||||+ ..+.++||+|+.|+ +++++.|++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhh
Confidence 99999999999999999999999999999999999999876 99999999996 58999999999997 67889999876
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 225 ~ 225 (254)
T COG1121 225 V 225 (254)
T ss_pred c
Confidence 5
No 20
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-52 Score=401.60 Aligned_cols=239 Identities=24% Similarity=0.396 Sum_probs=199.8
Q ss_pred ceeEEEEeEEEEecCCcc------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 63 GVFLTWKDLSVVVPSGKK------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
.++|+++||++.|..+.+ ..+...+|+||||+|++||++||+|+||||||||+++|+|++++ .+|+|+++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECC
Confidence 468999999999963211 00235799999999999999999999999999999999999987 479999999
Q ss_pred Eeccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCC
Q 038004 137 RKETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGG 205 (330)
Q Consensus 137 ~~~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~ 205 (330)
+++.. .++.++||||++ .++|.+||.+|+.++...+.. ..++.+.++++.++++.++|.+ ..++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~---- 157 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR---- 157 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC----
Confidence 87531 135699999998 589999999999887543311 2355667778899999999953 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|.|+|+||||+ ..+..+||+|++|
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999866799999999995 6888999999999
Q ss_pred eCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 286 AYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++|++++.|++ .+++. +|.|+|++.+
T Consensus 236 ~~G~ive~g~~---~~i~~----------~~~~py~~~l 261 (331)
T PRK15079 236 YLGHAVELGTY---DEVYH----------NPLHPYTKAL 261 (331)
T ss_pred ECCEEEEEcCH---HHHHc----------CCCCHHHHHH
Confidence 99999999985 34452 6667776643
No 21
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.5e-52 Score=400.56 Aligned_cols=241 Identities=27% Similarity=0.371 Sum_probs=202.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|..+. +...+|+||||+|++||++||+|+||||||||+++|+|++++...++|+|.|+|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD---GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CceEEEeCeEEEEecCC---CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 46899999999995321 23579999999999999999999999999999999999998742237999999987531
Q ss_pred --------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 --------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 --------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++||||++ .++|.+|+.+++.+....+. .....+..+++.++++.++|.+..+. .+.++++|
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~L 162 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEF 162 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccC
Confidence 124699999998 68999999999987654432 23455667789999999999753321 23478999
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++||+||||+|||+.++..|+++|++++++.|.|+|+||||+ ..+..+||++++|++|+++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999876799999999996 5788899999999999999
Q ss_pred EEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 292 YFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 292 ~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|++ .+++. +|.|+|++.|
T Consensus 242 e~g~~---~~i~~----------~p~~pyt~~l 261 (330)
T PRK09473 242 EYGNA---RDVFY----------QPSHPYSIGL 261 (330)
T ss_pred EECCH---HHHHh----------CCCCHHHHHH
Confidence 99995 45553 7788888765
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-54 Score=375.65 Aligned_cols=232 Identities=26% Similarity=0.433 Sum_probs=201.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~ 140 (330)
.+.++++||++.| +.+.+|+|||+.|++++++|||||||||||||||++..+... ....+|+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yY-------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYY-------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEE-------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc
Confidence 4579999999999 467899999999999999999999999999999999987653 2346799999999763
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++++|+|||.|..|| +|++||+.|+.+++.. ..++..+.|+..|+...|.+.-..++. ..+..|||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSG 152 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI---KDKELDEIVESSLKKAALWDEVKDRLH-KSALGLSG 152 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc---chHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCCh
Confidence 2 2467999999999999 8999999999987642 237788899999999999876555443 35678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||+||||||+.+|++||||||||+|||.+..+|-+++.+|++ ..||+++||++ ..+.+++|+..++..|++|++
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEE
Confidence 999999999999999999999999999999999999999999974 58999999996 689999999999999999999
Q ss_pred cChhhHHHHHHhCCCCCCCCCCChhHHHH
Q 038004 294 GPASMTEQLFASNGFPCPSLRNPSDHYLR 322 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~~~~~~p~~~~~~ 322 (330)
|+ +.++|. +|.+.-|+
T Consensus 230 g~---T~~iF~----------~P~~~~Te 245 (253)
T COG1117 230 GP---TDKIFT----------NPKHKRTE 245 (253)
T ss_pred cC---HHhhhc----------CccHHHHH
Confidence 99 567884 88876554
No 23
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-53 Score=397.63 Aligned_cols=220 Identities=36% Similarity=0.532 Sum_probs=194.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKYG------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEeC------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHH
Confidence 578999999993 146899999999999999999999999999999999999998 47999999987542
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++++||++|++.+++.+||+|+|.|.+.++.. +....+++++++++.++|.+..+++ +++||+|||||++
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ 146 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLS 146 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHH
Confidence 245799999999999999999999999887643 2245677899999999999855443 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
||+||+.+|++|||||||+||||..+..++++|++++++.|+|||++||.+ .++..+||+|++|++|++++.|++++..
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999976558999999996 6899999999999999999999876544
Q ss_pred HH
Q 038004 301 QL 302 (330)
Q Consensus 301 ~~ 302 (330)
..
T Consensus 226 ~~ 227 (293)
T COG1131 226 EK 227 (293)
T ss_pred Hh
Confidence 43
No 24
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-52 Score=397.37 Aligned_cols=237 Identities=27% Similarity=0.388 Sum_probs=199.8
Q ss_pred eeEEEEeEEEEecCCcc---cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc
Q 038004 64 VFLTWKDLSVVVPSGKK---ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~---~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~ 140 (330)
++|+++||++.|+...+ ..+...+|+||||+|++||++||+|+||||||||+++|+|++++ .+|+|.++|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcC
Confidence 57999999999963211 01135799999999999999999999999999999999999987 4799999998753
Q ss_pred c--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 038004 141 L--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~ 209 (330)
. .++.++||||++ .++|.+|+.+++.+....+. .....+.++++.++++.+||.+ .+++ +++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~ 153 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPH 153 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCc
Confidence 1 134699999998 58999999999987654431 2345566778999999999964 3333 578
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++||+||||++||+.++..|+++|++++++.|.|||+||||+ ..+..+||+|++|++|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGR 232 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999876799999999995 68888999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|+. .+++. +|.|+|++.|
T Consensus 233 ive~g~~---~~~~~----------~p~hpyt~~l 254 (327)
T PRK11308 233 CVEKGTK---EQIFN----------NPRHPYTQAL 254 (327)
T ss_pred EEEECCH---HHHhc----------CCCCHHHHHH
Confidence 9999994 44553 6777787765
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-52 Score=402.42 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=193.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+ +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCH
Confidence 589999999993 135699999999999999999999999999999999999987 47999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+..+++.++++.++|.+..++ ++++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999986532 23556667889999999999877766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999876799999999996 589999999999999999999997653
No 26
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-52 Score=397.59 Aligned_cols=239 Identities=24% Similarity=0.355 Sum_probs=198.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~~~-- 141 (330)
+|+++||++.|.... +...+|+||||+|++||++||+|+||||||||+++|+|++++.. +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 3 LLNVDKLSVHFGDES---APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred eEEEeCeEEEECCCC---ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 589999999995321 22569999999999999999999999999999999999987421 358999999987531
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..+.++||||++ .++|.+|+.+++.+....+. .....+.++++.++++.+||.+... ..+.++++||
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LS 155 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLS 155 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCC
Confidence 113699999998 48999999999877654321 2345566788999999999975321 1123678999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|+|+||||+ ..+..+||+|++|++|++++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999876799999999996 57889999999999999999
Q ss_pred EcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 293 FGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 293 ~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
.|++ .+++. +|.|+|++.|
T Consensus 235 ~g~~---~~~~~----------~p~hpyt~~l 253 (326)
T PRK11022 235 TGKA---HDIFR----------APRHPYTQAL 253 (326)
T ss_pred ECCH---HHHhh----------CCCChHHHHH
Confidence 9995 44553 7778887665
No 27
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.9e-52 Score=429.29 Aligned_cols=243 Identities=45% Similarity=0.718 Sum_probs=218.2
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv 161 (330)
+++.+|+||||++++||++||+||||||||||+++|+|+.++. ..+|+|.+||++... ..++++||+|++.+++.+||
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence 4567999999999999999999999999999999999998763 147999999987532 23569999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
+|++.+.+.++.+...+.++..++++++++.+||.+..++.+++..+++|||||||||+||++|+.+|++|||||||+||
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 99999987655433345556677899999999999999998888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHH
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYL 321 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~ 321 (330)
|+.++..+++.|+++++ .|+|||+++|++...+.++||++++|++|++++.|+++++.++|+..|++||...||+|+++
T Consensus 238 D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~l 316 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316 (659)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence 99999999999999985 59999999999865688999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 038004 322 RTINKD 327 (330)
Q Consensus 322 ~~l~~~ 327 (330)
+.++.+
T Consensus 317 dv~~~~ 322 (659)
T PLN03211 317 DLANGV 322 (659)
T ss_pred HHcCcc
Confidence 988643
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.8e-52 Score=399.73 Aligned_cols=216 Identities=28% Similarity=0.445 Sum_probs=193.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. .+.+|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRFG-------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEeC-------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 689999999993 356899999999999999999999999999999999999874 7999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||.||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999986542 24456677889999999999887776 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999877799999999996 588999999999999999999997543
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-52 Score=398.98 Aligned_cols=217 Identities=26% Similarity=0.469 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 5 NFVVLKNITKRFG-------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRS 74 (351)
T ss_pred cEEEEEeEEEEEC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCC
Confidence 4799999999993 356899999999999999999999999999999999999874 7999999987632
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++||||++.+||++||.||+.|+...+ ..++.+..++++++++.++|.+..++ ++.+|||||||||+
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVa 146 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVA 146 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 2357999999999999999999999987543 24556677899999999999877665 46799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||+|++|++|+++..|+++++
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999877799999999996 588999999999999999999997643
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.8e-53 Score=363.12 Aligned_cols=212 Identities=27% Similarity=0.408 Sum_probs=192.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+. ++.+|+||||+|++||++-|+||||||||||+|+|++..+| ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYPG------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcCC------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccc
Confidence 4789999999963 36799999999999999999999999999999999999988 47999999997632
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++||+||||..|.+..||+||++|+.... +.++.+.++++.++|+.+||.+..+. .|.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 2357999999999999999999999998764 46788999999999999999988765 3679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+||||++.+|++||+||||-+|||.....|++++.++. ..|+||++.||| ...+..+-.|++.+.+|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999997 569999999999 568888999999999999987653
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-51 Score=396.45 Aligned_cols=220 Identities=22% Similarity=0.372 Sum_probs=192.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++..
T Consensus 1 ~~L~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 70 (353)
T PRK10851 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70 (353)
T ss_pred CEEEEEEEEEEeC-------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 3589999999993 356999999999999999999999999999999999999874 7999999987632
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||.+||.||+.|+...... ...+..+..+++.++++.++|.+..++ ++.+|||||||||
T Consensus 71 ~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRv 145 (353)
T PRK10851 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRV 145 (353)
T ss_pred HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 235699999999999999999999987653210 123455667789999999999877665 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..+.+.|++++++.|+|+|++|||+ .++..+||+|++|++|++++.|+++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999876799999999996 689999999999999999999996543
No 32
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-51 Score=392.11 Aligned_cols=241 Identities=18% Similarity=0.273 Sum_probs=195.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~-- 141 (330)
+|+++||++.|+.+. +...+|+||||+|++||++||+|+||||||||+++|+|++++. .+++|+|.|+|+++..
T Consensus 3 ~L~v~~l~~~y~~~~---~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSD---GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred eEEEeeeEEEEeCCC---CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 689999999995321 2356999999999999999999999999999999999998742 2357999999987531
Q ss_pred -------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 142 -------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDS---MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
..+.++||||++. ++|.+||.+++.+......... ....+.++++.++|+.+||.+..+ +.+.+++
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~ 157 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPY 157 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCch
Confidence 1236999999985 7899999999976432211000 112344567899999999975321 1123678
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|.|||+||||+ ..+..+||+|++|++|+
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQ 236 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999866799999999995 68889999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|++.|+. .+++. +|.|+|++.|
T Consensus 237 ive~g~~---~~i~~----------~p~~~y~~~l 258 (330)
T PRK15093 237 TVETAPS---KELVT----------TPHHPYTQAL 258 (330)
T ss_pred EEEECCH---HHHHh----------CCCCHHHHHH
Confidence 9999985 44453 5667776644
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.6e-51 Score=397.62 Aligned_cols=218 Identities=25% Similarity=0.426 Sum_probs=193.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~ 81 (375)
T PRK09452 12 SPLVELRGISKSFD-------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHV 81 (375)
T ss_pred CceEEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCC
Confidence 45799999999993 356999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||.||+.|+...+ ..+..+..+++.++++.++|.+..++ +|.+|||||||||
T Consensus 82 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRV 153 (375)
T PRK09452 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRV 153 (375)
T ss_pred CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 2356999999999999999999999986532 23455667789999999999887776 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+.+.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999877799999999996 578999999999999999999997543
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-53 Score=365.50 Aligned_cols=216 Identities=29% Similarity=0.418 Sum_probs=196.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|++.+++++|++ ..++++||||+++.||++||+|||||||||+||+|++++.|+ +|.|+++|.+...
T Consensus 1 Ml~v~~l~K~y~~------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYGS------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPS 71 (245)
T ss_pred CeeeeehhhhccC------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChH
Confidence 4789999999952 345999999999999999999999999999999999999984 7999999976422
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.+++||.++....+|.+||++|||.|.+.++ ++...+.+.+++++.+.++|.++++++++ +||.||||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 2467999997778999999999999998875 46778889999999999999999999876 89999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+++|++++|||||||||..+...+.+.++++. +.|++|||+||.+ .++..+||+|+++++|++|+.|+.+..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 9999999999999999999999999999999999996 5599999999996 689999999999999999999997654
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3e-51 Score=395.68 Aligned_cols=216 Identities=29% Similarity=0.439 Sum_probs=192.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc--cEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT--GEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~--G~I~~~g~~~~~- 141 (330)
.|+++||++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++| ++ |+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAYG-------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA---AGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEEC-------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCCEEEEECCEECCCC
Confidence 489999999993 34699999999999999999999999999999999999987 47 999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+..+++.++++.++|.+..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 2357999999999999999999999987543 245566778899999999998877764 679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED-GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||++||+..+..+.+.|++++++. |.|+|++|||+ .++..+||+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999998665 89999999995 58899999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 226 ~ 226 (362)
T TIGR03258 226 L 226 (362)
T ss_pred H
Confidence 4
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-51 Score=372.94 Aligned_cols=214 Identities=32% Similarity=0.468 Sum_probs=185.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSFG-------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChh
Confidence 47899999983 346999999999999999999999999999999999999874 7999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||.||+.++..... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 13469999999999999999999988643221 123455567788999999998766553 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999755689999999996 5788999999999999999999854
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.7e-51 Score=388.46 Aligned_cols=216 Identities=25% Similarity=0.402 Sum_probs=191.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 6 ~~i~i~~l~k~~~-------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRYG-------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEEC-------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccch
Confidence 4799999999993 357999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++++||++|++.+++.+||+||+.|...++ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 2357999999999999999999998766543 2344555677889999999988777754 69999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+||+||+.+|++|||||||+|||+.++..++++|++++ +.|+|||++||++ .++..+||+|++|++|++++.|++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999997 4599999999996 689999999999999999999997654
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=375.32 Aligned_cols=217 Identities=29% Similarity=0.458 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
++++++|+++.|+. +..+|+++||+|++||.++|+|+||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 2 ~~i~~~~l~~~y~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~ 72 (235)
T COG1122 2 RMIEAENLSFRYPG------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEK 72 (235)
T ss_pred ceEEEEEEEEEcCC------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchh
Confidence 46899999999953 257999999999999999999999999999999999999984 699999998743
Q ss_pred ---cccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 141 ---LAFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 141 ---~~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..++++|||||+|. .+..-||.+.++|+.... ..+.++.++++.++++.+||.+.+++ .|++||||||
T Consensus 73 ~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred hHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 23467999999983 344559999999987643 35677889999999999999988665 4789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+||.+|+.+|++||||||||+||+..+..++++++++.++.|+|+|++|||+ ..+..+||++++|++|+++.+|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877689999999996 689999999999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
.+
T Consensus 224 ~~ 225 (235)
T COG1122 224 AE 225 (235)
T ss_pred HH
Confidence 43
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-50 Score=393.72 Aligned_cols=218 Identities=24% Similarity=0.422 Sum_probs=193.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|. +..+|+|+||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..
T Consensus 17 ~~~l~l~~v~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~ 86 (377)
T PRK11607 17 TPLLEIRNLTKSFD-------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHV 86 (377)
T ss_pred CceEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCC
Confidence 45799999999983 346999999999999999999999999999999999999874 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||.||+.|+.... ..+..+.++++.++++.++|.+..++ ++.+|||||||||
T Consensus 87 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRV 158 (377)
T PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRV 158 (377)
T ss_pred CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHH
Confidence 2357999999999999999999999986532 23456677889999999999877665 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999877799999999995 588999999999999999999997653
No 40
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1e-51 Score=389.93 Aligned_cols=241 Identities=26% Similarity=0.383 Sum_probs=213.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|.... +...++++|||.|++||.+||||+||||||-.++.|+||++.. ...+|+|.|+|+++-
T Consensus 4 ~~lL~v~nLsV~f~~~~---~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG---GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCC---cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 46899999999996432 4678999999999999999999999999999999999999762 234799999998742
Q ss_pred ---------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 ---------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.+..+|+++||+| +|+|-.|+...|....+++. +++.+..++++.++|+.+|+.+...+. +.||+
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPH 156 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR--GLSRAAARARALELLELVGIPEPEKRL--DAYPH 156 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHcCCCchhhhh--hhCCc
Confidence 1124799999999 49999999999988877654 577889999999999999998764332 35899
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||.||+||+++|++||.||||++||+..+.+|+++|++++++.|++++|||||+ ..+.+++|||+||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccE
Confidence 99999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|. +.++|. +|+|+||+.|
T Consensus 236 ivE~~~---t~~lF~----------~PqHpYTr~L 257 (534)
T COG4172 236 IVETGT---TETLFA----------APQHPYTRKL 257 (534)
T ss_pred EeecCc---HHHHhh----------CCCChHHHHH
Confidence 999999 677885 9999999887
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-50 Score=391.59 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=190.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAYG-------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999993 346999999999999999999999999999999999999874 7999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+++.+||.||+.|+.... .....+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 2356999999999999999999999876532 234455667899999999998776654 57999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999866689999999996 578899999999999999999997654
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-50 Score=387.80 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=190.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~~---~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGG---RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCC---CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCH
Confidence 478999999995211 1357999999999999999999999999999999999999874 7999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++||||++.+++.+||.||+.++.... ..+..+..+++.++++.+||.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADR-----YPAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 1356999999999999999999998876432 23445566788999999999877665 3579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999766689999999996 578899999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 226 ~~~ 228 (343)
T PRK11153 226 SEV 228 (343)
T ss_pred HHH
Confidence 543
No 43
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.1e-50 Score=389.39 Aligned_cols=205 Identities=21% Similarity=0.335 Sum_probs=183.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---------cCcEEEEeCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---------FGTSAYVTQED 153 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---------~~~i~~v~Q~~ 153 (330)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ++.++||||++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 456799999999999999999999999999999999999987 479999999876421 35799999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 154 TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 154 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
.+||.+||.||+.|+..+. .+...+..+++.++++.+||....++ +|.+|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999886543 24556677889999999999876665 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||++||+.++..+.+.|.+++++.|+|||++|||+ .++..+||+|++|++|+++..|++++.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999866799999999995 578999999999999999999987653
No 44
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-50 Score=387.05 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=191.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y~-------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~ 108 (340)
T PRK13536 39 TVAIDLAGVSKSYG-------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPAR 108 (340)
T ss_pred ceeEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcc
Confidence 35799999999993 356999999999999999999999999999999999999874 7999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+||.||+.+...++. ....+..+++.++++.++|.+..+++ +.+||||||||
T Consensus 109 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~LS~G~kqr 180 (340)
T PRK13536 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADAR-----VSDLSGGMKRR 180 (340)
T ss_pred hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCC-----hhhCCHHHHHH
Confidence 23569999999999999999999987654431 23445566788999999998877775 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++||+||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ .++.++||+|++|++|++++.|++++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999975 599999999996 68999999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 259 l 259 (340)
T PRK13536 259 L 259 (340)
T ss_pred H
Confidence 4
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-50 Score=363.20 Aligned_cols=210 Identities=33% Similarity=0.536 Sum_probs=182.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTYG-------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEeC-------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchh
Confidence 47899999983 24699999999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++.... ........+++.++++.++|.+..++. +.+||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 346999999999999999999998765432 123344556788999999998776654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999765689999999996 5788999999999999998765
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-50 Score=363.29 Aligned_cols=216 Identities=31% Similarity=0.483 Sum_probs=185.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
|+++||++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++.....+.
T Consensus 1 l~~~~l~~~~~~~~---~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG---GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC---cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCc
Confidence 47899999994211 115699999999999999999999999999999999999987 479999999876544467
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++|++.+++.+|+.||+.++...+ ........+++.++++.++|.+..++. +.+||||||||++|||||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al 146 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHH
Confidence 999999999999899999998865432 123344556788999999998766654 569999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe--CCeEEEEcCh
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA--YGKTIYFGPA 296 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~--~G~iv~~g~~ 296 (330)
+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|+ +|++++.++.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998756689999999996 57889999999999 7999988774
No 47
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=377.08 Aligned_cols=236 Identities=26% Similarity=0.409 Sum_probs=207.7
Q ss_pred eeEEEEeEEEEecCCcc-----------------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC
Q 038004 64 VFLTWKDLSVVVPSGKK-----------------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-----------------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~ 126 (330)
..++++||++-|..... ..+...-+.|+||+|+.|||+.|+|-||||||||+|+|.+|+.|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 36899999998843210 01234468999999999999999999999999999999999988
Q ss_pred CCccEEEECCEecc---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 038004 127 EQTGEILINGRKET---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197 (330)
Q Consensus 127 ~~~G~I~~~g~~~~---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 197 (330)
++|+|+++|+++. .+++++++|||+..|+|+.||.||+.|+..++ +.+++++++++.++|+.+||..
T Consensus 81 -t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 81 -TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 4799999998752 12457999999999999999999999998765 4678999999999999999998
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH
Q 038004 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 198 ~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~ 277 (330)
+.++ ||++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.+++++.++||+|||||+ ++..+
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 8776 67899999999999999999999999999999999999999999999999989999999999995 68999
Q ss_pred hccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 278 LFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 278 ~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|||.+|++|+|+..|++++ ++ .+|+..|.+.+
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~e---Il----------~~PAndYV~~F 264 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEE---IL----------LNPANDYVRDF 264 (386)
T ss_pred ccceEEEecCCeEEEeCCHHH---HH----------cCccHHHHHHH
Confidence 999999999999999999764 34 37888777665
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-50 Score=365.60 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=186.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRFG-------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEEC-------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 589999999994 24699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 234699999999999999999999876533210 0012334456788999999997766654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999765689999999996 5788999999999999999999854
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-50 Score=363.63 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=185.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 i~~~~~~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKYG-------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEEC-------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHH
Confidence 47899999983 346999999999999999999999999999999999999874 7999999986531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+||++|+.+....+ .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 1246999999999999999999998865432 123344566789999999998766654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||||+.+|++|||||||++||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChH
Confidence 99999999999999999999999999999999999865589999999996 5788999999999999999988754
No 50
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-51 Score=370.67 Aligned_cols=205 Identities=30% Similarity=0.491 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEecCCcc-cCC-ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKK-ENR-KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-~~~-~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+.+.+ +.. ...+++||||+|++||++||||+||||||||.|+|+||++| ++|+|+|+|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhh
Confidence 57999999999975432 112 25799999999999999999999999999999999999988 47999999987432
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.. ..+..+++.++|+.+||....-. +||++||||||||++|
T Consensus 80 ~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~----ryPhelSGGQrQRi~I 120 (268)
T COG4608 80 LS-----------------------------------KEERRERVLELLEKVGLPEEFLY----RYPHELSGGQRQRIGI 120 (268)
T ss_pred cc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhh----cCCcccCchhhhhHHH
Confidence 11 24456789999999998764433 3689999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
||||+.+|+++++|||+|+||...|.+|+++|++++++.|.|++|||||+ +.+..+|||++||+.|+||+.|+ ..+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~---~~~ 196 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGP---TEE 196 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecC---HHH
Confidence 99999999999999999999999999999999999999999999999995 68999999999999999999999 567
Q ss_pred HHHhCCCCCCCCCCChhHHHHhh
Q 038004 302 LFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 302 ~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+|. +|.|+||+.|
T Consensus 197 ~~~----------~p~HpYTk~L 209 (268)
T COG4608 197 VFS----------NPLHPYTKAL 209 (268)
T ss_pred Hhh----------CCCCHHHHHH
Confidence 784 9999999987
No 51
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-50 Score=415.04 Aligned_cols=243 Identities=41% Similarity=0.747 Sum_probs=219.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lT 160 (330)
+++.+|+|||+++++||+++|+||||||||||+++|+|+.++....+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999987643347999999987632 2356999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW-NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~-~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
|+|||.|++.++.+...+.++.+++++++++.+||.+..++.+++. ..++|||||||||+|||+|+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999987766555566777788999999999999999998853 256899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhH
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDH 319 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~ 319 (330)
|||+.++..+++.|+++++ .|+|||+++|++...+.++||++++|++|++++.|+++++.++|.+.|++||...||+++
T Consensus 196 gLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred chhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 9999999999999999985 599999999998667899999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 038004 320 YLRTINK 326 (330)
Q Consensus 320 ~~~~l~~ 326 (330)
+++.++.
T Consensus 275 ~~~~~~~ 281 (617)
T TIGR00955 275 YVQVLAV 281 (617)
T ss_pred HHHHhhc
Confidence 9988753
No 52
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=6.8e-50 Score=378.36 Aligned_cols=216 Identities=29% Similarity=0.408 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPVPSRA 72 (303)
T ss_pred cEEEEEeEEEEeC-------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECcccH
Confidence 4799999999993 35699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++|++|++.+++.+||.||+.+....+ ..+..+..+++.++++.++|.+..++. +.+||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv 144 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRL 144 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHH
Confidence 1356999999999999999999998654432 123444556788899999998777664 469999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999974 589999999996 588899999999999999999997654
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=373.44 Aligned_cols=221 Identities=28% Similarity=0.408 Sum_probs=187.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~--~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEGT--PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCCC--ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCc
Confidence 489999999995321 01246999999999999999999999999999999999999874 7999999987632
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ--DAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~~~~~~LSGG 214 (330)
....++||||++. .+..+||.||+.|+.... ...+.+..+++.++++.+||. +..++ ++.+||||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgG 148 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGG 148 (287)
T ss_pred cHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHH
Confidence 1356999999973 333579999998865432 245566777899999999996 44444 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ .++..+||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865699999999995 5788999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
++++.
T Consensus 228 ~~~~~ 232 (287)
T PRK13637 228 TPREV 232 (287)
T ss_pred CHHHH
Confidence 87654
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.5e-50 Score=361.27 Aligned_cols=208 Identities=26% Similarity=0.424 Sum_probs=179.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYPG-----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEecC-----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcCh
Confidence 3789999999942 124699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++.+||.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1246999999999999999999998875432 123344567789999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ ..+..+||++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999974 489999999996 578889999999999974
No 55
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-50 Score=347.19 Aligned_cols=215 Identities=31% Similarity=0.469 Sum_probs=188.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
+.+++|.+.|.+ .=-..+++|+.||++||+||||||||||+|+|+|+..| .+|+|+++|++.+. .
T Consensus 2 l~L~~V~~~y~~---------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH---------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc---------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcc
Confidence 567889988831 23457899999999999999999999999999999987 47999999998642 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+-++++||+..||.++||.+|+.++..-.+ .-..+.+++++.++.++||..+.++. |.+|||||||||+||
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc---ccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 2459999999999999999999988764322 22356778899999999999888764 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~ 302 (330)
|+|+++-+||+||||||+|||..+.+++.++.+++.+++.|++++||++ +++.+++|+++++.+|+|.+.|+. .++
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~---~~~ 217 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGST---QEL 217 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccH---HHH
Confidence 9999999999999999999999999999999999999999999999997 589999999999999999999994 455
Q ss_pred HH
Q 038004 303 FA 304 (330)
Q Consensus 303 ~~ 304 (330)
+.
T Consensus 218 ~~ 219 (231)
T COG3840 218 LS 219 (231)
T ss_pred hc
Confidence 53
No 56
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-49 Score=362.29 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=186.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+... +.+.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ~i~~~~l~~~~~~~~---~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 1 MIELKNVSKVFGDTG---GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSG 74 (233)
T ss_pred CeEEecceEEccCCC---CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence 378999999994210 1126999999999999999999999999999999999999874 6999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.++|.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (233)
T cd03258 75 KELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQK 146 (233)
T ss_pred HHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHH
Confidence 1346999999999999999999998765432 123344566788999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999765689999999995 578899999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 226 ~ 226 (233)
T cd03258 226 E 226 (233)
T ss_pred H
Confidence 4
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-49 Score=357.45 Aligned_cols=210 Identities=25% Similarity=0.442 Sum_probs=183.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRFG-------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEEC-------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 47899999983 346999999999999999999999999999999999999874 7999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 246999999999999999999998765432 133455567788999999998766654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999765689999999996 5788999999999999999876
No 58
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-51 Score=363.34 Aligned_cols=220 Identities=30% Similarity=0.452 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
+++++++|+++| ++..+++||||++++||++|||||||||||||+|+|+|+++|+ +|+|.++|++++..
T Consensus 3 ~lL~v~~l~k~F-------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~ 72 (250)
T COG0411 3 PLLEVRGLSKRF-------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLP 72 (250)
T ss_pred ceeeeccceeec-------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCC
Confidence 578999999998 5678999999999999999999999999999999999999984 69999999987421
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL--------PD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
+..++--||...+|+.|||.||+..+...+. +. .....+..+++.++|+.+||.+.+++..
T Consensus 73 p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A----- 147 (250)
T COG0411 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA----- 147 (250)
T ss_pred HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----
Confidence 2347788999999999999999988754221 11 1135677888999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+||+|||+|+.|||||+.+|++|+||||.+||.+....++.++|+++.++.|.||++|.||+ ..+..+||||+||+.|
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYG 226 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCC
Confidence 489999999999999999999999999999999999999999999999876789999999996 6899999999999999
Q ss_pred eEEEEcChhhH
Q 038004 289 KTIYFGPASMT 299 (330)
Q Consensus 289 ~iv~~g~~~~~ 299 (330)
+++++|+|+++
T Consensus 227 ~~IAeG~P~eV 237 (250)
T COG0411 227 EVIAEGTPEEV 237 (250)
T ss_pred cCcccCCHHHH
Confidence 99999998765
No 59
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-49 Score=385.20 Aligned_cols=223 Identities=24% Similarity=0.384 Sum_probs=191.0
Q ss_pred eEEEEeEEEEecCCc-----------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC
Q 038004 65 FLTWKDLSVVVPSGK-----------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE 127 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~-----------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~ 127 (330)
.|+++||++.|.... +.++...+|+|+||+|++||+++|+||||||||||+|+|+|+++|.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--
Confidence 689999999884321 0123345899999999999999999999999999999999999874
Q ss_pred CccEEEECCEecccc---------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 038004 128 QTGEILINGRKETLA---------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198 (330)
Q Consensus 128 ~~G~I~~~g~~~~~~---------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~ 198 (330)
+|+|+++|+++... .+.++||+|++.+++.+||.||+.++.... .....+..+++.++++.+||.+.
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 79999999875321 246999999999999999999999876543 23445556788999999999876
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.++ ++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|.+++++.|+|||++|||+ .++..+
T Consensus 158 ~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~ 231 (400)
T PRK10070 158 AHS-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRI 231 (400)
T ss_pred hhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHh
Confidence 665 46799999999999999999999999999999999999999999999999766689999999996 578899
Q ss_pred ccEEEEEeCCeEEEEcChhhH
Q 038004 279 FHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++++|++|++++.|++++.
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999986543
No 60
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-49 Score=371.44 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.... ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~--~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYKTP--FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCCCc--ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 4899999999953210 1246999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
..+.++||||++ .++ ..||.||+.|+.... .....+..+++.++++.++|. +..++ ++.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 124699999997 455 469999998875432 234555667889999999997 44454 467999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||||++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999766699999999996 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 9987653
No 61
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.8e-49 Score=361.72 Aligned_cols=216 Identities=32% Similarity=0.452 Sum_probs=184.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRFG-------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEEC-------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHH
Confidence 46899999983 346999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS-------MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
....++|++|++.+++.+||.||+.++........ ....+..+++.++++.++|.+..++. +.+||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 12459999999999999999999988654321100 01344556788999999998766654 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999975 689999999996 57889999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 224 ~~~~~~ 229 (236)
T cd03219 224 EGTPDE 229 (236)
T ss_pred ecCHHH
Confidence 998543
No 62
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-49 Score=368.66 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=182.5
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
.++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 26 ~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT-------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc-------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhh
Confidence 455666666 3567999999999999999999999999999999999999874 6999999986531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1246999999999999999999998865432 123344556788999999998776664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+.++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765689999999996 5788999999999999999999854
No 63
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.1e-49 Score=382.20 Aligned_cols=221 Identities=25% Similarity=0.383 Sum_probs=189.7
Q ss_pred EEEEeEEEEecCC-----------c------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCC
Q 038004 66 LTWKDLSVVVPSG-----------K------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128 (330)
Q Consensus 66 l~~~nl~~~~~~~-----------~------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~ 128 (330)
++++||.+-|... . +.++...+|+|+||+|++||+++|+|+||||||||+++|+|+++| +
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~ 77 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---S 77 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C
Confidence 4688888887422 0 124567799999999999999999999999999999999999987 4
Q ss_pred ccEEEECCEe----ccc---------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 038004 129 TGEILINGRK----ETL---------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 129 ~G~I~~~g~~----~~~---------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L 195 (330)
+|+|+++|++ +.. ..+.++||||++.++|.+||.||+.++.... ...+.+.++++.++++.+||
T Consensus 78 ~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL 154 (382)
T TIGR03415 78 RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGL 154 (382)
T ss_pred CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 7999999962 211 1246999999999999999999999886432 23456667789999999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|.+++++.|+|||++|||+ .++
T Consensus 155 ~~~~~~-----~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~ 228 (382)
T TIGR03415 155 AQWADK-----KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEA 228 (382)
T ss_pred chhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH
Confidence 877665 45799999999999999999999999999999999999999999999999866699999999995 578
Q ss_pred HHhccEEEEEeCCeEEEEcChhh
Q 038004 276 FELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 276 ~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
.++||++++|++|++++.|++++
T Consensus 229 ~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 229 LKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred HHhCCEEEEEECCEEEEecCHHH
Confidence 89999999999999999999654
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-49 Score=358.72 Aligned_cols=209 Identities=33% Similarity=0.494 Sum_probs=177.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+.+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGG---EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCC---cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchh
Confidence 47899999994210 115699999999999999999999999999999999999987 47999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||.||+.++...+ ........+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1246999999999999999999998875432 123334456788999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+. +||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999999754689999999996 4665 9999999999974
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-49 Score=361.97 Aligned_cols=218 Identities=31% Similarity=0.492 Sum_probs=183.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|.. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYPN------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecCC------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHh
Confidence 468999999841 14699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-----PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..+.++|++|++.+++.+||.||+.++..... ..........+++.++++.++|.+..++ ++.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 12469999999999999999999987532100 0011123345678889999999766655 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999765689999999996 57888999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 226 ~~~~~~ 231 (241)
T cd03256 226 DGPPAE 231 (241)
T ss_pred ecCHHH
Confidence 998654
No 66
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-49 Score=366.90 Aligned_cols=215 Identities=26% Similarity=0.347 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYKD------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeCC------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence 6899999999941 245999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++. .++.+||.||+.|+.... .....+.++++.++++.++|.+..++ ++.+||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHH
Confidence 1246999999973 445679999998865321 23445556778999999999876665 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+.++||++++|++|++++.|+++.
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999975 489999999995 57889999999999999999999754
No 67
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.6e-49 Score=366.64 Aligned_cols=217 Identities=27% Similarity=0.417 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 6 NLVDMRGVSFTRG-------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMS 75 (269)
T ss_pred ceEEEeCeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccC
Confidence 4799999999983 34699999999999999999999999999999999999987 47999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+|+.||+.++..... .........++.++++.++|.+..++. +.+|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 148 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGM 148 (269)
T ss_pred hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 12469999999999999999999987643211 123344556788899999998766654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999765689999999995 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 228 ~~~ 230 (269)
T PRK11831 228 AQA 230 (269)
T ss_pred HHH
Confidence 654
No 68
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.5e-49 Score=373.20 Aligned_cols=214 Identities=23% Similarity=0.390 Sum_probs=189.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|++++|. ++.+|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLYG-------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEEC-------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChH
Confidence 589999999993 356999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++.++|++|++.+++.+|+.||+.+...++ .....+..++++++++.+||.+..+++ +..||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 1356999999999999999999998876543 123455566789999999999877765 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ .++.++||++++|++|++++.|+.++.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999985 4 69999999996 589999999999999999999997654
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-49 Score=369.31 Aligned_cols=231 Identities=26% Similarity=0.365 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. ...+.+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~--~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPNS--PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCCC--cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 478999999995221 01235999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LS 212 (330)
.++.++||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.++|.+ ..++ .+++||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 134699999997 4555 59999999875432 2345666778999999999963 4444 467999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||+|++|++|++++
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 589999999996 57889999999999999999
Q ss_pred EcChhhHH---HHHHhCCCCCC
Q 038004 293 FGPASMTE---QLFASNGFPCP 311 (330)
Q Consensus 293 ~g~~~~~~---~~~~~~g~~~~ 311 (330)
.|++++.. +++...|+.+|
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~p 246 (288)
T PRK13643 225 CGTPSDVFQEVDFLKAHELGVP 246 (288)
T ss_pred ECCHHHHHcCHHHHHHcCCCCC
Confidence 99976542 23444555544
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.4e-49 Score=361.72 Aligned_cols=214 Identities=28% Similarity=0.396 Sum_probs=184.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKFH-------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcccccc
Confidence 589999999994 24699999999999999999999999999999999999987 47999999986531
Q ss_pred ----------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 ----------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
....++|++|++.+++.+|+.||+.++..... ........+++.++++.+||.+..++ ++.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 12469999999999999999999987543211 12334456678899999999876655 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|+++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAIFMDQGRIV 223 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999974 489999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+++
T Consensus 224 ~~~~~~ 229 (250)
T PRK11264 224 EQGPAK 229 (250)
T ss_pred EeCCHH
Confidence 999854
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-49 Score=368.04 Aligned_cols=218 Identities=26% Similarity=0.391 Sum_probs=187.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.. ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 4 ~l~~~~l~~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKED----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCCC----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcH
Confidence 68999999999521 1245999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.++|+||++. +++.+||.||+.|+.... .....+..+++.++++.+||.+..++. +.+||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 1246999999984 677789999998875432 245566677899999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+ ..||++++|++|++++.|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865699999999996 456 5899999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 227 ~ 227 (279)
T PRK13650 227 L 227 (279)
T ss_pred H
Confidence 3
No 72
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-49 Score=372.18 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=185.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.|+++||++.|+.+. .....+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|++..
T Consensus 2 ~i~~~~l~~~y~~~~--~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC--CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccc
Confidence 489999999995321 11246999999999999999999999999999999999999874 699999986431
Q ss_pred -------------------------cccCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 038004 141 -------------------------LAFGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194 (330)
Q Consensus 141 -------------------------~~~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 194 (330)
...+.++||||++ ..+...||+||+.|+.... .....+..+++.++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 1124699999986 2334579999998875432 2455667788999999999
Q ss_pred CC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH
Q 038004 195 LQ-DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273 (330)
Q Consensus 195 L~-~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~ 273 (330)
|. +..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..++++|++++ +.|.|||++|||+ .
T Consensus 154 L~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~ 226 (305)
T PRK13651 154 LDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDL-D 226 (305)
T ss_pred CChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCH-H
Confidence 96 45554 467999999999999999999999999999999999999999999999997 4599999999995 5
Q ss_pred HHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 274 DVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 274 ~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+..+||||++|++|++++.|+++++
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 78899999999999999999997654
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.7e-49 Score=363.50 Aligned_cols=219 Identities=32% Similarity=0.456 Sum_probs=184.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYP------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecC------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCH
Confidence 378999999983 134699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-----PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++.+||.||+.++..... .......+..+++.++++.++|.+..++. +.+|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 146 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQL 146 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccC
Confidence 13469999999999999999999976532100 00011234456788999999998766653 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..+.++|++++++.|.|||++||++ ..+.++||++++|++|+++
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788999999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 226 ~~~~~~~ 232 (243)
T TIGR02315 226 FDGAPSE 232 (243)
T ss_pred ecCCHHH
Confidence 9998654
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.4e-49 Score=355.85 Aligned_cols=214 Identities=29% Similarity=0.442 Sum_probs=183.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+... ....+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVK---KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCC---ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEcccCHH
Confidence 378999999995210 112699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++. +.+||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 146 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVA 146 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHH
Confidence 1356999999999999999999998765432 123445567889999999998777664 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999964 589999999996 5788999999999999998754
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.3e-49 Score=358.36 Aligned_cols=213 Identities=28% Similarity=0.470 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRYG-------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEeC-------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHh
Confidence 47899999984 346999999999999999999999999999999999999874 7999999986521
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
....++|++|++.+++.+|+.||+.+....+ .....+..+++.++++.+++.+..++. +.+||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1245999999999999999999998765332 123344556788999999998766654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 999999999999999999999999999999999999974 589999999996 57899999999999999999998543
No 76
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-49 Score=356.86 Aligned_cols=216 Identities=23% Similarity=0.373 Sum_probs=183.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|+.+. ..+.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~ 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS---VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLS 77 (233)
T ss_pred ceEEEEeEEEEcCCCC---cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCC
Confidence 4699999999995211 124699999999999999999999999999999999999987 479999999875321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|++|++.+++.+|+.||+.+...+. .....+..+++.++++.+||.+..++. +.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (233)
T PRK11629 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGG 149 (233)
T ss_pred HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHH
Confidence 146999999999999999999998865432 123345567789999999998766653 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ ..+.. +|++++|++|++++.+
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999755689999999996 45655 5799999999999988
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 7
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.6e-49 Score=358.90 Aligned_cols=213 Identities=29% Similarity=0.477 Sum_probs=181.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCCCCccEEEECCEecc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL-----SSNTEQTGEILINGRKET 140 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-----~~~~~~~G~I~~~g~~~~ 140 (330)
|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|++ +| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~ 70 (227)
T cd03260 1 IELRDLNVYYG-------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY 70 (227)
T ss_pred CEEEEEEEEcC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence 47899999983 346999999999999999999999999999999999998 65 4799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.++ .+||.||+.++..... .....+..+++.++++.+||.+..++.+. +.+|||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSg 144 (227)
T cd03260 71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSG 144 (227)
T ss_pred hcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCH
Confidence 1 124699999999888 7899999987654321 11223345678899999999876665420 469999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ . .|||++|||+ ..+..+||++++|++|++++.
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999974 3 8999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 222 g~~~ 225 (227)
T cd03260 222 GPTE 225 (227)
T ss_pred cCcc
Confidence 8854
No 78
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-49 Score=368.89 Aligned_cols=220 Identities=23% Similarity=0.373 Sum_probs=186.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.+.. ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP--YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCCCc--cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 5899999999952210 1246999999999999999999999999999999999999874 6999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
.++.++||||++ .+++ .||.||+.|+.... .....+..+++.++++.+||. +..++ ++.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 134699999997 4555 59999998875322 234556677889999999996 45554 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765689999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 9997653
No 79
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3e-49 Score=373.80 Aligned_cols=204 Identities=26% Similarity=0.414 Sum_probs=179.7
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~ 158 (330)
+++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++... .++.++|++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 3467999999999999999999999999999999999999874 7999999987532 13469999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPt 238 (330)
+||.||+.+...++ .....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999998866543 233455567789999999998777664 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 239 sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999974 489999999996 588999999999999999999997654
No 80
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=358.38 Aligned_cols=215 Identities=25% Similarity=0.426 Sum_probs=184.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+. .+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 1 IEFENVTKRYGG------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPV 71 (242)
T ss_pred CEEEEEEEEeCC------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChH
Confidence 468999999841 14699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD--AMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++.+++.+|+.||+.++..+. .....+..+++.++++.++|.+ ..++ ++.+||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qr 143 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQR 143 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHH
Confidence 1246999999999999999999998765432 1234455677899999999985 4444 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999765589999999996 57889999999999999999998543
No 81
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-49 Score=362.24 Aligned_cols=213 Identities=28% Similarity=0.445 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++......
T Consensus 1 ml~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 70 (255)
T PRK11248 1 MLQISHLYADYG-------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGA 70 (255)
T ss_pred CEEEEEEEEEeC-------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCC
Confidence 378999999983 246999999999999999999999999999999999999874 7999999987643334
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+||.||+.++.... .....+..+++.++++.++|.+..++ ++.+||||||||++||||
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHH
Confidence 6899999999999999999998765432 12344456678999999999876655 357999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe--CCeEEEEcCh
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA--YGKTIYFGPA 296 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~--~G~iv~~g~~ 296 (330)
|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999998655689999999996 57889999999998 5999998764
No 82
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6e-49 Score=354.67 Aligned_cols=213 Identities=31% Similarity=0.540 Sum_probs=183.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+.+ .+++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+...
T Consensus 1 l~~~~l~~~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKG-----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCCC-----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHH
Confidence 4789999998421 15699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.+|+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 1346999999999999999999998765432 123344556788999999998766654 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||||+.+|++|||||||++||+.++..+++.|+++++ +.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999863 58999999996 5788899999999999999999864
No 83
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-49 Score=352.68 Aligned_cols=209 Identities=30% Similarity=0.516 Sum_probs=181.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~ 144 (330)
++++|+++.|. ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++| .+|+|.++|++... ...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRFG-------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHc
Confidence 47899999983 34699999999999999999999999999999999999987 47999999986532 235
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+|+.||+.+....+ .....+..+++.++++.++|.+..++. +.+||||||||++||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 6999999999999999999998765432 123345567789999999998766654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999874 489999999996 5788899999999999998764
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-48 Score=356.23 Aligned_cols=214 Identities=27% Similarity=0.432 Sum_probs=184.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 70 (240)
T PRK09493 1 MIEFKNVSKHFG-------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKV 70 (240)
T ss_pred CEEEEeEEEEEC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCh
Confidence 378999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.++..... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (240)
T PRK09493 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQ 143 (240)
T ss_pred hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHH
Confidence 12469999999999999999999987542111 123445567788999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999999974 589999999996 5788899999999999999999854
No 85
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.8e-48 Score=358.93 Aligned_cols=214 Identities=29% Similarity=0.408 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRFG-------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEeC-------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccc
Confidence 47899999984 24699999999999999999999999999999999999987 47999999986521
Q ss_pred --------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 142 --------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 142 --------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
..+.++|++|++.+++.+|+.||+.++..... ........+.+.++++.+|+.+..++ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADH-----M 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhc-----C
Confidence 13469999999999999999999987532111 12344455678899999999876665 3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|+|++||++ ..+..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999999765689999999996 578899999999999
Q ss_pred CeEEEEcChh
Q 038004 288 GKTIYFGPAS 297 (330)
Q Consensus 288 G~iv~~g~~~ 297 (330)
|++++.|+.+
T Consensus 223 G~i~~~g~~~ 232 (252)
T TIGR03005 223 GRIVEQGKPD 232 (252)
T ss_pred CEEEEeCCHH
Confidence 9999999853
No 86
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-48 Score=370.07 Aligned_cols=221 Identities=27% Similarity=0.385 Sum_probs=186.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+.+. .....+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~--~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~ 93 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ--ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDK 93 (320)
T ss_pred CceEEEEeEEEEeCCCC--cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccc
Confidence 35799999999995321 01246999999999999999999999999999999999999874 7999999976421
Q ss_pred --------------------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cc
Q 038004 142 --------------------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DA 198 (330)
Q Consensus 142 --------------------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~ 198 (330)
.++.++||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.++|. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhH
Confidence 124699999997 4665 49999998865321 234556667889999999996 44
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ +|.|||++|||+ ..+..+
T Consensus 170 ~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~ 242 (320)
T PRK13631 170 LER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEV 242 (320)
T ss_pred hcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHh
Confidence 544 4579999999999999999999999999999999999999999999999974 589999999995 578899
Q ss_pred ccEEEEEeCCeEEEEcChhhH
Q 038004 279 FHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++++|++|++++.|++++.
T Consensus 243 adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 243 ADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999997653
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-49 Score=363.04 Aligned_cols=209 Identities=29% Similarity=0.408 Sum_probs=183.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 10 ~~~l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYG-------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPLAEA 79 (257)
T ss_pred CCcEEEEEEEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEHHHh
Confidence 35699999999993 34699999999999999999999999999999999999987 479999999875433
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+||.||+.++.. ....+++.++++.++|.+..++. +.+||||||||++||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK---------GQWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc---------chHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHH
Confidence 4679999999999998999999987421 01235688899999998766654 579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|++|++++.++.
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeccc
Confidence 9999999999999999999999999999999998766689999999996 578899999999999999998874
No 88
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=401.87 Aligned_cols=225 Identities=23% Similarity=0.342 Sum_probs=189.4
Q ss_pred ceeEEEEeEEEEecCCcc----cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 63 GVFLTWKDLSVVVPSGKK----ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~----~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|+++||++.|+...+ ..+.+.+|+||||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEE
Confidence 358999999999952100 00124699999999999999999999999999999999999987 47999999986
Q ss_pred ccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038004 139 ETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWN 207 (330)
Q Consensus 139 ~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~ 207 (330)
+.. .++.++||||++ .+++.+||.+++.++...+. .....+..+++.++|+.+||. ...++ +
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~ 460 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----Y 460 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----C
Confidence 531 134699999997 58999999999988654321 112345567889999999996 44444 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+++|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||+||||+ ..+..+||+|++|++
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~ 539 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYL 539 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 6799999999999999999999999999999999999999999999999866799999999995 688999999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 99999998543
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.7e-48 Score=355.81 Aligned_cols=214 Identities=33% Similarity=0.523 Sum_probs=183.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ ++.+|+||||+|.+||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~~~~~ 70 (236)
T TIGR03864 1 ALEVAGLSFAYG-------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRAPR 70 (236)
T ss_pred CEEEEeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcccCCh
Confidence 378999999984 34699999999999999999999999999999999999987 47999999986532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+....+ .....+..+.+.++++.+||.+..++. +.+|||||+||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVE 142 (236)
T ss_pred hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHH
Confidence 1246999999999888999999998765432 123344556788999999998766654 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ ..+. .||++++|++|++++.|++++
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999755689999999996 4665 599999999999999998543
No 90
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2e-48 Score=361.51 Aligned_cols=223 Identities=23% Similarity=0.345 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCc--ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGK--KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+... ...+.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccc
Confidence 589999999995210 001135799999999999999999999999999999999999987 47999999987531
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++ .+++.+||.||+.+...... .+......+++.++++.++|. ...++ ++.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK-----LPRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhC
Confidence 124699999997 46778999999977643211 123344556789999999996 44554 35699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788899999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 231 ~~g~~~~ 237 (265)
T TIGR02769 231 EECDVAQ 237 (265)
T ss_pred EECCHHH
Confidence 9999543
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.6e-48 Score=356.96 Aligned_cols=215 Identities=25% Similarity=0.411 Sum_probs=182.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
+++++||++.|. +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYG-------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEEC-------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccc
Confidence 378999999983 246999999999999999999999999999999999999863 0116999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ----DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++ +|+.||+.+....+. .....+..+++.++++.+||. +..++ ++.+|
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 145 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGL 145 (247)
T ss_pred ccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccC
Confidence 1246999999999888 999999988654321 123445567788999999997 44444 46799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||++ ..+..+||++++|++|+++
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTAFFYDGELV 222 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999974 48999999996 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+++
T Consensus 223 ~~~~~~ 228 (247)
T TIGR00972 223 EYGPTE 228 (247)
T ss_pred EeCCHH
Confidence 999854
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8e-49 Score=354.13 Aligned_cols=210 Identities=28% Similarity=0.451 Sum_probs=180.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGYG-------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeecC-------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHH
Confidence 47899999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-GLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... ..+...++.++++.+ ++.+..++. +.+||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 12459999999999999999999988654321 123345677788888 576655553 56999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHH
Confidence 9999999999999999999999999999999999999975 589999999995 5788999999999999999998854
No 93
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=381.46 Aligned_cols=219 Identities=28% Similarity=0.414 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++...
T Consensus 2 ~~L~~~nls~~y~-------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~ 71 (402)
T PRK09536 2 PMIDVSDLSVEFG-------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALS 71 (402)
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCC
Confidence 3689999999993 35799999999999999999999999999999999999987 47999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..++++||+|++.+++.+||.||+.++...+... ........++++++++.++|.+..++. +.+|||||||
T Consensus 72 ~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQ 146 (402)
T PRK09536 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQ 146 (402)
T ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 1356999999999989999999998764321100 111234567889999999998777664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+++|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+.++|||+++|++|++++.|+++
T Consensus 147 Rv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 147 RVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999985 589999999996 6889999999999999999999987
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 225 ev 226 (402)
T PRK09536 225 DV 226 (402)
T ss_pred HH
Confidence 53
No 94
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-48 Score=352.42 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=178.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||++.|+.+. +.+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++....
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGK---LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSS 74 (221)
T ss_pred CEEEEeeeEEccCCC---cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCH
Confidence 378999999995211 124699999999999999999999999999999999999987 479999999875310
Q ss_pred -------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 143 -------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 143 -------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.+.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||.+..++. +.+|||||
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 146 (221)
T TIGR02211 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGE 146 (221)
T ss_pred hHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 146999999999999999999998765332 123344456788999999998766653 56999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+. .||++++|++|+++
T Consensus 147 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999999765689999999996 4564 58999999999975
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-48 Score=363.19 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+. ++.+|+||||+|++||++||+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 4 YILKVEELNYNYSD------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSR 74 (283)
T ss_pred ceEEEEeEEEEeCC------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCc
Confidence 47999999999941 24699999999999999999999999999999999999987 47999999987521
Q ss_pred -----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++. .+...|+.||+.++.... ..+..+..+++.++++.+||.+..++. +.+|||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred chHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 1246999999973 334579999998765322 234455567789999999998766654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865689999999996 57888999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
+++.
T Consensus 226 ~~~~ 229 (283)
T PRK13636 226 PKEV 229 (283)
T ss_pred HHHH
Confidence 7654
No 96
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=6.3e-49 Score=351.83 Aligned_cols=205 Identities=30% Similarity=0.496 Sum_probs=178.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTYG-------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEEC-------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHH
Confidence 47899999983 34699999999999999999999999999999999999987 47999999986531 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+||.||+.++...+. . ..+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 3469999999999999999999987654321 1 235678899999998776664 469999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++|||+ ..+..+||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999975 689999999996 5788899999999999998765
No 97
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=356.97 Aligned_cols=231 Identities=22% Similarity=0.359 Sum_probs=190.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
..+|+++||++.|. ++.+|+||||+|++||+++|+|+||||||||+++|+|+++|.. +.+|+|+++|+++.
T Consensus 5 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYT-------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeC-------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 34799999999983 2469999999999999999999999999999999999998631 24799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCC
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~ 209 (330)
. ..+.++|++|++.+++ +||+||+.++..... ........+++.++++.+++.+ ..++ .+.
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 1 1346999999998875 899999988654321 1223445667888999999842 3333 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNM-QQAGRISDRTAFFLNGC 226 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999995 4 68999999996 57889999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|+++ +++ .+|.+.|++.+
T Consensus 227 i~~~g~~~---~~~----------~~~~~~~~~~~ 248 (254)
T PRK14273 227 IEEESSTD---ELF----------FNPKNTKTEEY 248 (254)
T ss_pred EEEeCCHH---HHH----------hCCCChHHHHh
Confidence 99999853 444 26777776543
No 98
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-48 Score=350.77 Aligned_cols=206 Identities=30% Similarity=0.460 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 1 MIEFHNVSKAYP------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRG 71 (214)
T ss_pred CEEEEeeeEEeC------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCH
Confidence 378999999984 124699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.+..... ........+++.++++.++|.+..++. +.+||||||
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 143 (214)
T TIGR02673 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQ 143 (214)
T ss_pred HHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1246999999999999999999998875432 123344556788999999998765553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999864 589999999996 57889999999999885
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.4e-48 Score=356.92 Aligned_cols=215 Identities=29% Similarity=0.393 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 4 NKLNVIDLHKRYG-------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVR 73 (257)
T ss_pred ccEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEccccc
Confidence 3689999999994 34699999999999999999999999999999999999987 46999999986521
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccC
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIG 204 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~ 204 (330)
..+.++|++|++.+++.+|++||+.++..... .....+.++++.++++.+||.+.. ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 148 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK--- 148 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC---
Confidence 12469999999999999999999987542111 123455567788999999997654 43
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 205 ~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ ..+..+||++++
T Consensus 149 --~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~~~~~d~i~~ 224 (257)
T PRK10619 149 --YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIF 224 (257)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEE
Confidence 3579999999999999999999999999999999999999999999999974 599999999996 578889999999
Q ss_pred EeCCeEEEEcChh
Q 038004 285 LAYGKTIYFGPAS 297 (330)
Q Consensus 285 l~~G~iv~~g~~~ 297 (330)
|++|++++.|+.+
T Consensus 225 l~~G~i~~~~~~~ 237 (257)
T PRK10619 225 LHQGKIEEEGAPE 237 (257)
T ss_pred EECCEEEEeCCHH
Confidence 9999999999854
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-48 Score=357.87 Aligned_cols=219 Identities=24% Similarity=0.368 Sum_probs=185.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+++++||++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~ 73 (255)
T PRK11300 4 PLLSVSGLMMRFG-------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLP 73 (255)
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCC
Confidence 3699999999983 35699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC--------CC----CCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL--------PD----SMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~--------~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
....++|++|++.+++.+||.||+.++..... .. .....+..+++.++++.+||.+..++.
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 150 (255)
T PRK11300 74 GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--- 150 (255)
T ss_pred HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC---
Confidence 12348999999999999999999987642110 00 001123345678899999998766654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|
T Consensus 151 --~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l 227 (255)
T PRK11300 151 --AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVV 227 (255)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5699999999999999999999999999999999999999999999999765589999999995 5788999999999
Q ss_pred eCCeEEEEcChhh
Q 038004 286 AYGKTIYFGPASM 298 (330)
Q Consensus 286 ~~G~iv~~g~~~~ 298 (330)
++|++++.|++++
T Consensus 228 ~~g~i~~~~~~~~ 240 (255)
T PRK11300 228 NQGTPLANGTPEE 240 (255)
T ss_pred ECCeEEecCCHHH
Confidence 9999999998654
No 101
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-48 Score=349.92 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=177.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYPN------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeCC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHH
Confidence 468999999841 24699999999999999999999999999999999999987 47999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++|++|++.+++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 1246999999999999999999998875432 123445566788999999998766653 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ ..+..+||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999964 489999999996 578889999999999974
No 102
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-48 Score=356.78 Aligned_cols=234 Identities=23% Similarity=0.374 Sum_probs=190.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. .+.+|+|+||+|++||++||+|+||||||||+++|+|++++. .+++|+|.++|+++.
T Consensus 10 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYG-------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 45799999999983 346999999999999999999999999999999999998752 124799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ +|+.||+.+..... ........+++.++++.+++....... .+..+.+|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCH
Confidence 1 1246999999998888 89999998865432 123344456788899999984321111 1124579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4 79999999995 578899999999999999999
Q ss_pred cChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 294 GPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|+++ +++. +|.+.|++.+
T Consensus 235 ~~~~---~~~~----------~~~~~~~~~~ 252 (258)
T PRK14268 235 GQTR---QIFH----------NPREKSTEDY 252 (258)
T ss_pred CCHH---HHhc----------CCCCHHHHHH
Confidence 9854 4453 6666666543
No 103
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-48 Score=349.96 Aligned_cols=207 Identities=29% Similarity=0.459 Sum_probs=178.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. ++.+|+|+||+|++| +++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~~~~~~~-------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRYG-------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEEC-------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHH
Confidence 47899999983 246999999999999 99999999999999999999999874 7999999976532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+||.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 1356999999999999999999998765432 123344456788999999998766653 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||+ ..+..+||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999973 58999999996 5788899999999999998765
No 104
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.1e-48 Score=359.51 Aligned_cols=222 Identities=28% Similarity=0.472 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|+...+|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFN-------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeC-------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 4789999999983 3569999999999999999999999999999999999998753346999999986531
Q ss_pred --------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 142 --------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 142 --------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
....++|+||++.+++.+|+.||+.+......+ ......+.++++.++++.+||.+..++. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 123589999999999999999999875421100 0011234456789999999998766654 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+..+||++++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999999765689999999996 5788999999999999
Q ss_pred eEEEEcChhh
Q 038004 289 KTIYFGPASM 298 (330)
Q Consensus 289 ~iv~~g~~~~ 298 (330)
++++.|++++
T Consensus 230 ~i~~~g~~~~ 239 (262)
T PRK09984 230 HVFYDGSSQQ 239 (262)
T ss_pred EEEEeCCHHH
Confidence 9999998654
No 105
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-49 Score=336.41 Aligned_cols=213 Identities=31% Similarity=0.441 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
.+|++++++++...+. +...||++|+|.|++||.+|||||||||||||+-+++|+..|+ +|+|.+.|+++.
T Consensus 5 ~ii~~~~l~ktvg~~~---~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ld 78 (228)
T COG4181 5 NIIEVHHLSKTVGQGE---GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLD 78 (228)
T ss_pred ceeehhhhhhhhcCCC---cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcC
Confidence 3789999999986443 4578999999999999999999999999999999999999874 799999998752
Q ss_pred ------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 ------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.+++|||||...|.|+||..||+..++.+.. -+....+..+.++|+.+||.+.+.. ||.+||||
T Consensus 79 Ed~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGG 150 (228)
T COG4181 79 EDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGG 150 (228)
T ss_pred HHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCccccccc-----CccccCch
Confidence 123679999999999999999999998887653 1344556778999999999887766 67899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|+|||+|||||+..|++||.||||-+||..+..+|.++|..+.+++|.|++++|||+ .+..-|+|.+-|.+|++++
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999999999999999999995 5778899999999999975
No 106
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.5e-48 Score=350.49 Aligned_cols=208 Identities=25% Similarity=0.361 Sum_probs=179.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYLG------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEecC------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChh
Confidence 789999999841 24699999999999999999999999999999999999987 47999999986531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++ .+.+|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHH
Confidence 1246999999999888999999998865432 12344555678899999999876655 35799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|++|||||+.+|++|||||||++||+.++..++++|+++++ .|.|+|++||++ ..+..+||++++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999999999974 489999999996 57889999999999999853
No 107
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.5e-48 Score=426.81 Aligned_cols=257 Identities=39% Similarity=0.635 Sum_probs=222.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-c
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-A 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~ 142 (330)
..++++||++.|+.+. +.+.+|+|||+++++||++||+||||||||||+++|+|+.++..+++|+|.+||++... .
T Consensus 758 ~~l~~~nl~~~~~~~~---~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK---EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred ceEEEEeeEEEecCCC---CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 4689999999985321 34679999999999999999999999999999999999987433357999999998642 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.++||+|++.+++.+||+|+|.|++.++.+...+..+..++++++++.++|.+.+++.++.. ..+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHH
Confidence 4569999999989999999999999887665444456667788999999999999998887632 237999999999999
Q ss_pred HHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC-eEEEEcCh----
Q 038004 223 IEILTRPK-LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG-KTIYFGPA---- 296 (330)
Q Consensus 223 raL~~~P~-llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G-~iv~~g~~---- 296 (330)
+||+.+|+ +|||||||+|||+.++..+++.|+++++ .|+|||+++||+...+.+.||++++|++| ++++.|++
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~ 992 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccccc
Confidence 99999997 9999999999999999999999999974 59999999999875567889999999997 99999997
Q ss_pred hhHHHHHHhCCC-CCCCCCCChhHHHHhhc
Q 038004 297 SMTEQLFASNGF-PCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 297 ~~~~~~~~~~g~-~~~~~~~p~~~~~~~l~ 325 (330)
+++.++|+..|+ +||...||+|++++.++
T Consensus 993 ~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~ 1022 (1394)
T TIGR00956 993 HTIINYFEKHGAPKCPEDANPAEWMLEVIG 1022 (1394)
T ss_pred chHHHHHHhcCCCCCCCCCCHHHHHHHHhh
Confidence 456889999996 99999999999998775
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-48 Score=362.61 Aligned_cols=219 Identities=27% Similarity=0.396 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|..+. ...+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPGT--PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCCC--CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 588999999994210 01246999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
....++|++|++ .++ .+||.||+.++.... .....+..+++.++++.+||. +..++. +.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCC
Confidence 124699999997 344 579999998765432 234455667889999999996 455554 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999964 599999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 226 ~g~~~~~ 232 (287)
T PRK13641 226 HASPKEI 232 (287)
T ss_pred eCCHHHH
Confidence 9987643
No 109
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-48 Score=353.83 Aligned_cols=214 Identities=27% Similarity=0.371 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
+.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 1 MSIQLNGINCFYG-------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSK 70 (242)
T ss_pred CEEEEEeeEEEEC-------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccc
Confidence 3589999999994 34699999999999999999999999999999999999987 4799999998642
Q ss_pred --------cccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 --------LAFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 --------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
...+.++|++|++.+++.+|+.||+.+.. ... .....+..+++.++++.+||.+..++. +.+|
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 142 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHL 142 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 01246999999999999999999997532 221 123344556789999999998766654 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++||++ ..+..+||++++|++|+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYMENGHIV 220 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999964 589999999996 5788899999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 221 ~~~~~~ 226 (242)
T PRK11124 221 EQGDAS 226 (242)
T ss_pred EeCCHH
Confidence 999854
No 110
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=352.96 Aligned_cols=221 Identities=25% Similarity=0.381 Sum_probs=183.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSFG-------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred eEEEEeeEEEEC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 589999999983 346999999999999999999999999999999999998742 1257999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.++...... .....+..+++.++++.++|.+..... .+..+.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~q 153 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQ 153 (250)
T ss_pred CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHH
Confidence 134699999999888999999999876532211 112344556788999999986422111 12346799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..+.++|++++ + |.|+|++||++ ..+..+||++++|++|++++.|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHH
Confidence 9999999999999999999999999999999999999985 4 79999999996 5788999999999999999999854
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.4e-48 Score=349.55 Aligned_cols=214 Identities=28% Similarity=0.387 Sum_probs=181.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|..+. ....+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 5 ~~l~~~~l~~~~~~~~---~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE---HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCCC---cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCC
Confidence 4799999999995211 1135999999999999999999999999999999999999874 79999999875321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 246999999999999999999998765332 123345567889999999998766653 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+ ..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999765689999999996 456 45999999999999754
No 112
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=353.28 Aligned_cols=221 Identities=27% Similarity=0.404 Sum_probs=183.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~-- 140 (330)
+|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ .+.+|+|+++|+++.
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 4 AIETVNLRVYYG-------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred eEEEEeEEEEeC-------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 689999999983 246999999999999999999999999999999999998763 124799999998753
Q ss_pred c-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 141 L-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 141 ~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
. ....++|++|++.+++.+||.||+.++...+.. ........+++.++++.++|....... .+.++.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~ 154 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQ 154 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHH
Confidence 1 124699999999999999999999876532210 112344556788899999985321111 123467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999986 3 68999999996 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
++
T Consensus 232 ~~ 233 (253)
T PRK14267 232 TR 233 (253)
T ss_pred HH
Confidence 54
No 113
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-48 Score=360.14 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=186.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYSG------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeCC------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCH
Confidence 5899999999941 23599999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++. .+...||.||+.++.... ........+++.++++.++|.+..++. +.+||||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 145 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKR 145 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHH
Confidence 1246999999974 334579999998765321 234455567789999999998766664 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+.++||++++|++|++++.|++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999999999999765689999999996 57889999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 225 ~ 225 (277)
T PRK13652 225 I 225 (277)
T ss_pred H
Confidence 4
No 114
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=353.82 Aligned_cols=215 Identities=25% Similarity=0.469 Sum_probs=185.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAYK-------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEeC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 589999999984 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++.+++.+|+.||+.+...... .....+...++.++++.++|.+..++. +++||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHH
Confidence 12469999999999999999999987643221 123344566788999999998765553 56999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..+.++|++++ +.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 999999999999999999999999999999999999987 4589999999996 57889999999999999999998654
No 115
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=353.18 Aligned_cols=221 Identities=27% Similarity=0.384 Sum_probs=182.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +..+.+|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 4 PPKMEARGLSFFYG-------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CcEEEEeeeEEEEC-------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 46799999999993 2469999999999999999999999999999999999864 21125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++ .||.||+.++..... ........+++.++++.++|.+..... .+..+.+|||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 152 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDR-LHESALGLSG 152 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHH-hhCCcccCCH
Confidence 1 1346999999998888 499999988754321 112334456788899999986432111 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999995 4 78999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 230 g~~~ 233 (253)
T PRK14242 230 GPTE 233 (253)
T ss_pred CCHH
Confidence 9854
No 116
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-48 Score=353.10 Aligned_cols=209 Identities=29% Similarity=0.419 Sum_probs=179.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSSF-------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCh
Confidence 589999999983 346999999999999999999999999999999999999874 7999999987531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.++|++|++.+++ .|+.||+.+..... . ....++.++++.++|. +..++ ++.+||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 1346999999998887 59999997653221 1 1235678899999996 34444 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999755689999999996 5788999999999999999999854
No 117
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.1e-50 Score=347.66 Aligned_cols=217 Identities=24% Similarity=0.469 Sum_probs=192.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|.++||.++| ++++++++|||+|++||++||+|||||||||.+.+++|+.+|+ +|+|.++|.+++.
T Consensus 4 ~L~a~~l~K~y-------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY-------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh-------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCCh
Confidence 68899999998 3567999999999999999999999999999999999999985 6999999998752
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.+..+||++|+++.|..+||.|||...+.++.. .....+.+.+++++|+.|+|.+..+.+- ..||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHH
Confidence 123599999999999999999999887766532 2233456667889999999999888753 5899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+.|||||+.+|++++|||||+|+||.....|.++++.|+ +.|..|+++-|+. .+...+|||.+++++|++++.|++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHH
Confidence 999999999999999999999999999999999999997 5699999999996 47889999999999999999999865
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 226 i 226 (243)
T COG1137 226 I 226 (243)
T ss_pred H
Confidence 4
No 118
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=352.09 Aligned_cols=220 Identities=24% Similarity=0.385 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|+++|+++..
T Consensus 4 ~l~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 4 KVKLEQLNVHFG-------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred EEEEEEEEEEeC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 589999999994 2469999999999999999999999999999999999986 322247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+++........ +..+.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~ 153 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQ 153 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHH
Confidence 13469999999999999999999987643221 1223444567889999999864221111 12467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-E-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-h-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999996 3 58999999996 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
++
T Consensus 231 ~~ 232 (252)
T PRK14256 231 TK 232 (252)
T ss_pred HH
Confidence 53
No 119
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=346.12 Aligned_cols=216 Identities=27% Similarity=0.410 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||+..| +..++|++|||++++||+++|+|+||+|||||||+|+|+.++. +|+|.++|++++..
T Consensus 2 ~mL~v~~l~~~Y-------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p 71 (237)
T COG0410 2 PMLEVENLSAGY-------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71 (237)
T ss_pred CceeEEeEeecc-------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCC
Confidence 479999999998 4578999999999999999999999999999999999999874 69999999987532
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHH
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqr 216 (330)
+..++||||...+||.|||+|||..+...... +......++++.+.|= |.+..+++- ..||||||
T Consensus 72 ~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQ 142 (237)
T COG0410 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQ 142 (237)
T ss_pred HHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHH
Confidence 34599999999999999999999987643211 1111222666666663 445555543 58999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|.++|||||+.+|++|+|||||.||-|....+|.+.+++++++.|.||+++.++. ..+.+++||.+||.+|+|++.|+.
T Consensus 143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999877789999999995 688999999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 222 ~eL 224 (237)
T COG0410 222 AEL 224 (237)
T ss_pred HHH
Confidence 543
No 120
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.4e-48 Score=349.40 Aligned_cols=216 Identities=28% Similarity=0.440 Sum_probs=177.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|.... ....+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (228)
T cd03257 1 LLEVKNLSVSFPTGG---GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSR 74 (228)
T ss_pred CeEEEeeeEeccCCC---cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccch
Confidence 378999999994210 1136999999999999999999999999999999999999874 7999999987532
Q ss_pred -----ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 -----AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER-AEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 -----~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++ .+++.+||++|+.+....... .......+. +.++++.++|. ...++ .+.+||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (228)
T cd03257 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELS 147 (228)
T ss_pred hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcC
Confidence 124699999998 467789999999876543211 111222222 35889999995 44554 356999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999999765589999999996 57888999999999999987
Q ss_pred Ec
Q 038004 293 FG 294 (330)
Q Consensus 293 ~g 294 (330)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 64
No 121
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-48 Score=355.86 Aligned_cols=216 Identities=31% Similarity=0.482 Sum_probs=184.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRLG-------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCH
Confidence 589999999983 34699999999999999999999999999999999999987 47999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+||.||+.++.... ........+++.++++.++|.+..++. +.+|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 1246999999998888899999998754321 112233456788999999998766654 569999999999
Q ss_pred HHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 220 SICIEIL------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 220 ~IAraL~------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
+|||||+ .+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEee
Confidence 9999999 599999999999999999999999999999745689999999996 578889999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|++++.
T Consensus 223 ~~~~~~ 228 (258)
T PRK13548 223 GTPAEV 228 (258)
T ss_pred CCHHHH
Confidence 986543
No 122
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-47 Score=351.69 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=184.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSFD-------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCH
Confidence 589999999984 246999999999999999999999999999999999999874 6999999986531
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP--D---SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
....++|++|++.+++.+||.||+.++...... . .....+..+++.++++.+|+.+..++. +.+|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 123599999999999999999999876431100 0 011234556789999999998766654 569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||+|||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-c-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEee
Confidence 99999999999999999999999999999999999999999996 3 68999999995 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 224 ~~~~~ 228 (242)
T TIGR03411 224 GSLDQ 228 (242)
T ss_pred CCHHH
Confidence 98543
No 123
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-48 Score=347.57 Aligned_cols=202 Identities=30% Similarity=0.424 Sum_probs=171.7
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccC
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFG 144 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~ 144 (330)
+++||++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|++... ..+
T Consensus 1 ~~~~l~~~~~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 71 (205)
T cd03226 1 RIENISFSYKK------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRK 71 (205)
T ss_pred CcccEEEEeCC------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhc
Confidence 46899999841 14699999999999999999999999999999999999987 47999999987531 234
Q ss_pred cEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.++|++|++. .++.+|+.||+.++.... . ...+++.++++.++|.+..++. +.+||||||||++|||
T Consensus 72 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lar 139 (205)
T cd03226 72 SIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAA 139 (205)
T ss_pred ceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHH
Confidence 6999999974 344579999998764321 1 1125688999999998776654 5799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|+++
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999974 489999999996 5788899999999999874
No 124
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.5e-48 Score=347.12 Aligned_cols=206 Identities=31% Similarity=0.444 Sum_probs=177.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ .+.+|+++||++++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSFG-------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEEC-------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchh
Confidence 47899999984 24699999999999999999999999999999999999987 47999999987521
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+++.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 12469999999999999999999987642111 123445566788999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999975 589999999996 578899999999999974
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=359.17 Aligned_cols=218 Identities=26% Similarity=0.380 Sum_probs=187.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+. ..+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~ 75 (279)
T PRK13635 4 EIIRVEHISFRYPD-----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEET 75 (279)
T ss_pred ceEEEEEEEEEeCC-----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCc
Confidence 46999999999942 1245999999999999999999999999999999999999874 7999999987632
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++. +++.+||.||+.++.... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~q 147 (279)
T PRK13635 76 VWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQ 147 (279)
T ss_pred HHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHH
Confidence 1346999999984 667789999998765432 234455667889999999998776664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++. .+. .||++++|++|++++.|+.+
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998656899999999964 565 59999999999999999876
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 226 ~~ 227 (279)
T PRK13635 226 EI 227 (279)
T ss_pred HH
Confidence 53
No 126
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-47 Score=357.75 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRYQ-------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEcC-------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccC
Confidence 478999999983 246999999999999999999999999999999999999874 7999999987521
Q ss_pred ----ccCcEEEEeCCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTL-MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+ +...|+.+|+.+..... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 12469999999753 34568999998764332 223445556788999999998766553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999974 489999999996 578899999999999999999987
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 221 ~~~ 223 (271)
T PRK13638 221 GEV 223 (271)
T ss_pred HHH
Confidence 654
No 127
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-48 Score=396.92 Aligned_cols=222 Identities=25% Similarity=0.316 Sum_probs=188.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
.++|+++||++.|.... +...+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~---~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~ 83 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRR 83 (623)
T ss_pred CceEEEeceEEEecCCC---CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccc
Confidence 45899999999995321 2357999999999999999999999999999999999999874 699999886320
Q ss_pred ----------------c-ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---c
Q 038004 141 ----------------L-AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD---A 198 (330)
Q Consensus 141 ----------------~-~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~ 198 (330)
. ..+.++||+|++ .+++.+||.||+.++...+. .....+.++++.++++.+||.+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~ 161 (623)
T PRK10261 84 SRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTI 161 (623)
T ss_pred cccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhH
Confidence 0 123699999998 68899999999998765421 2345566778999999999964 2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
+++ ++++|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++.|+|||+||||+ ..+..+
T Consensus 162 ~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~ 235 (623)
T PRK10261 162 LSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEI 235 (623)
T ss_pred HhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHh
Confidence 333 57899999999999999999999999999999999999999999999999866699999999995 688899
Q ss_pred ccEEEEEeCCeEEEEcChhh
Q 038004 279 FHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||++|++|++++.|++++
T Consensus 236 adri~vl~~G~i~~~g~~~~ 255 (623)
T PRK10261 236 ADRVLVMYQGEAVETGSVEQ 255 (623)
T ss_pred CCEEEEeeCCeecccCCHHH
Confidence 99999999999999998643
No 128
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.9e-48 Score=346.63 Aligned_cols=205 Identities=32% Similarity=0.480 Sum_probs=173.4
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
+++||++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 ~~~~l~~~~~~-----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYPD-----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecCC-----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHH
Confidence 36899999841 1146999999999999999999999999999999999999874 7999999986532
Q ss_pred ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 ~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++. .++.+|+.||+.++.... ........+++.++++.++|.+..++. +.+|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 1246999999985 366789999998764322 123344556788999999998666654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++++ |.|||++|||+ ..+..+||++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999754 89999999996 57888999999999885
No 129
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.3e-48 Score=349.38 Aligned_cols=210 Identities=28% Similarity=0.469 Sum_probs=174.1
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcE
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i 146 (330)
+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....++.+
T Consensus 1 ~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 1 EVEDLTVSYG-------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRI 70 (213)
T ss_pred CcccceeEEC-------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhhe
Confidence 3689999983 246999999999999999999999999999999999999874 799999998653334569
Q ss_pred EEEeCCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 147 AYVTQEDTLM--TTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 147 ~~v~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
+|++|++.++ +.+||.||+.++...... .........+++.++++.++|.+..++. +.+||||||||++|||
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~ 145 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLAR 145 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHH
Confidence 9999998763 347999999875432110 0011233456788999999997666553 5699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ ..+..+||++++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999975 589999999995 5788999999999876 55554
No 130
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.7e-47 Score=355.83 Aligned_cols=223 Identities=21% Similarity=0.354 Sum_probs=185.7
Q ss_pred eeEEEEeEEEEecCCcc--cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKK--ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~--~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|..... +.+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCC
Confidence 46999999999942110 01234699999999999999999999999999999999999987 47999999987532
Q ss_pred -----ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038004 142 -----AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++. +++.+|+.+++.+...... ........+++.++++.++|. ...++ ++.+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 152 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAP 152 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCH
Confidence 1246999999975 6788899999987654321 123344556788999999995 44444 3569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||++||+.++..+.+.|.+++++.|.|||++||++ ..+..+||++++|++|++++.
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999765689999999996 578889999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 232 ~~~~ 235 (267)
T PRK15112 232 GSTA 235 (267)
T ss_pred CCHH
Confidence 8854
No 131
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.8e-49 Score=349.90 Aligned_cols=217 Identities=26% Similarity=0.461 Sum_probs=200.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-cc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~ 143 (330)
.|++++|+++| +++.+++|+||.+++|+++|++|+|||||||.+|+|+|++.| ++|+|.++|.++.. ..
T Consensus 2 ~L~ie~vtK~F-------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF-------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc-------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhh
Confidence 58999999998 567899999999999999999999999999999999999988 47999999998753 34
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.+|||+|.+-.|||.+||.|.|.|.+.++ +++.++.++++..+|+++++.....+++ .+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHH
Confidence 67999999999999999999999998875 5788999999999999999988877764 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
+++++|+++|||||||||||.+.+.+-+.+.+++ +.|.||||+||.+ ..+.++||++++|+.|+.|.+|+.+.+..
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999999999999999999997 5699999999996 58999999999999999999999776554
No 132
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-47 Score=356.31 Aligned_cols=216 Identities=30% Similarity=0.458 Sum_probs=184.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ +.+.+|+||||+|++||+++|+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 1 ILETRDLKYSYP------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKK 71 (275)
T ss_pred CEEEEEEEEEeC------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccc
Confidence 378999999994 1245999999999999999999999999999999999999874 6999999987531
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++. .+..+||.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||+
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 72 SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred hHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 1246999999973 333479999998764321 233455567789999999998766654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999975 489999999995 578889999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 222 ~~~ 224 (275)
T PRK13639 222 KEV 224 (275)
T ss_pred HHH
Confidence 654
No 133
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-48 Score=358.75 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=183.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ +.+.+|+||||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCcccc
Confidence 378999999994 124599999999999999999999999999999999999987 47999999987531
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++. .++.+|+.||+.+..... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 1246999999985 356689999998765332 234555567789999999998776653 5799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ ..+ ..||++++|++|++++.|+++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999974 599999999996 466 569999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 221 ~~ 222 (274)
T PRK13644 221 NV 222 (274)
T ss_pred HH
Confidence 53
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=356.08 Aligned_cols=221 Identities=28% Similarity=0.364 Sum_probs=186.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 9 ~~~l~i~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~ 78 (265)
T PRK10575 9 DTTFALRNVSFRVP-------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESW 78 (265)
T ss_pred CceEEEeeEEEEEC-------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhC
Confidence 35799999999984 24699999999999999999999999999999999999987 47999999987521
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.++...... .........+++.++++.++|.+..++. +.+||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 153 (265)
T PRK10575 79 SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGER 153 (265)
T ss_pred CHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHH
Confidence 124699999998888899999999875321100 0011223456788999999997665553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999755589999999996 578899999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 233 ~~~ 235 (265)
T PRK10575 233 AEL 235 (265)
T ss_pred HHh
Confidence 543
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-48 Score=345.21 Aligned_cols=208 Identities=30% Similarity=0.445 Sum_probs=177.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++|+++.|. ++. .|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++.. .
T Consensus 1 i~~~~l~~~~~-------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG-------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC-------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHh
Confidence 46899999983 122 299999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++..... .. ....++++.++++.++|.+..++. +.+||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 3469999999999999999999987543111 11 123456788999999998766654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999765689999999995 5788999999999999998754
No 136
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=350.70 Aligned_cols=214 Identities=23% Similarity=0.396 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++||++.|+ .+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 4 VMLSFDKVSAHYG-------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQ 73 (237)
T ss_pred cEEEEEeEEEeeC-------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCC
Confidence 3699999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-GLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||.+|+.++.... ......+.+.++++.+ ++.+..++ ++.+||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~ 143 (237)
T PRK11614 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQ 143 (237)
T ss_pred HHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHH
Confidence 1246999999999999999999998754211 1223345567778877 47655444 3579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|++++.|++
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCH
Confidence 999999999999999999999999999999999999999874 489999999996 578999999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 222 ~~~ 224 (237)
T PRK11614 222 DAL 224 (237)
T ss_pred HHH
Confidence 543
No 137
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=358.51 Aligned_cols=221 Identities=25% Similarity=0.385 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+|+++||++.|+.. .+.+|+||||+|++||++||+||||||||||+++|+|+++|....+|+|.++|++...
T Consensus 4 ~~l~i~~l~~~~~~~-----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCC-----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 369999999999421 2459999999999999999999999999999999999998742123999999987632
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++. +++.+||.||+.|..... ..+..+..+++.++++.++|.+..++ ++.+|||||+|
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~q 150 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQ 150 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHH
Confidence 1246999999984 667789999998764322 23455666789999999999876665 46799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765689999999996 456 579999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 229 ~~ 230 (282)
T PRK13640 229 EI 230 (282)
T ss_pred HH
Confidence 54
No 138
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=349.33 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=181.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++..+.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFYG-------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred ceeeeeeEEEEC-------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 578999999994 2469999999999999999999999999999999999985322357999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++|++|++.+++ .|++||+.++...+.. ........+++.++++.++|.+...... +.++.+|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 151 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRL 151 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHH
Confidence 1346999999998887 6999999876533211 0122344567889999999964321111 224579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + |.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999985 4 89999999995 5788999999999999999999854
No 139
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.3e-48 Score=349.34 Aligned_cols=212 Identities=27% Similarity=0.392 Sum_probs=179.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYYG-------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEeC-------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 47899999984 346999999999999999999999999999999999999874 7999999987531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.+|+.++..... .. ..+.+.++++.++ +.+..++ ++.+||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 12469999999999999999999987654321 11 1234567777776 4554454 456999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999755589999999996 57888999999999999999998654
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 3
No 140
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-47 Score=348.99 Aligned_cols=220 Identities=24% Similarity=0.359 Sum_probs=181.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC---CCCCCCccEEEECCEecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL---SSNTEQTGEILINGRKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~---~~~~~~~G~I~~~g~~~~ 140 (330)
++|+++|+++.|+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+. ++. +++|+|.++|+++.
T Consensus 2 ~~l~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYG-------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEEC-------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecc
Confidence 5789999999983 346999999999999999999999999999999999973 331 24799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ .|+.||+.++...+. ........+.+.++++.++|.+...... +..+.+|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 149 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSG 149 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCH
Confidence 2 1246999999998887 599999987654321 1122334567889999999865321111 224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999985 4 78999999996 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 227 ~~~~~ 231 (250)
T PRK14245 227 DDTKK 231 (250)
T ss_pred CCHHH
Confidence 98543
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-47 Score=351.57 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
..++++|+++.|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+++|+|.++|+++..
T Consensus 12 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 12 SKIQVRNLNFYYG-------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred ceEEEEEEEEEeC-------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 4699999999994 2469999999999999999999999999999999999986 222357999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+...... +.++.+||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 160 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGG 160 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHH
Confidence 1346999999998887 799999987653221 1334455567889999999853211111 1245799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999995 4 68999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+.+
T Consensus 238 ~~~ 240 (260)
T PRK10744 238 NTD 240 (260)
T ss_pred CHH
Confidence 854
No 142
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.1e-47 Score=420.20 Aligned_cols=261 Identities=35% Similarity=0.559 Sum_probs=223.3
Q ss_pred ceeEEEEeEEEEecCCcc------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 63 GVFLTWKDLSVVVPSGKK------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
+..+.|+||++.++.+.. .++.+.+|+|||+++++|++++|+|||||||||||++|+|+.++. ..+|+|.++|
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 346999999999853211 123457999999999999999999999999999999999997542 3579999999
Q ss_pred Eeccc--ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 137 RKETL--AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 137 ~~~~~--~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+... ..+.++||+|++.+++.+||+|+|.|++.++.+...+.++..++++++++.++|.+..++.++...+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 86532 2346899999999999999999999987665443345566667899999999999999988875556799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~ 293 (330)
|||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++||+...+.++||++++|++ |++++.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 99999999999999999999999999999999999999999985 5999999999986567899999999996 899999
Q ss_pred cCh----hhHHHHHHhC-CCC-CCCCCCChhHHHHhhc
Q 038004 294 GPA----SMTEQLFASN-GFP-CPSLRNPSDHYLRTIN 325 (330)
Q Consensus 294 g~~----~~~~~~~~~~-g~~-~~~~~~p~~~~~~~l~ 325 (330)
|++ +++.++|+.. |.+ ||...||++++++...
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~ 1140 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSS 1140 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhc
Confidence 996 4678999996 664 9999999999988765
No 143
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-47 Score=350.73 Aligned_cols=216 Identities=25% Similarity=0.358 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-----
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----- 138 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~----- 138 (330)
++|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 74 (258)
T PRK11701 5 PLLSVRGLTKLYG-------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRD 74 (258)
T ss_pred ceEEEeeeEEEcC-------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccc
Confidence 3699999999984 246999999999999999999999999999999999999874 6999999986
Q ss_pred ccc---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 139 ETL---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 139 ~~~---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
+.. ..+.++|++|++. +++.+|+.+|+.+...... .....+..+++.++++.+++.+ ..++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 147 (258)
T PRK11701 75 LYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD----- 147 (258)
T ss_pred cccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----
Confidence 421 1235999999974 6788899999976542211 1122344567889999999964 4454
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|+
T Consensus 148 ~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~ 226 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMK 226 (258)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 35799999999999999999999999999999999999999999999998765689999999995 57888999999999
Q ss_pred CCeEEEEcChh
Q 038004 287 YGKTIYFGPAS 297 (330)
Q Consensus 287 ~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 227 ~g~i~~~~~~~ 237 (258)
T PRK11701 227 QGRVVESGLTD 237 (258)
T ss_pred CCEEEEeCCHH
Confidence 99999999854
No 144
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-47 Score=350.45 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 11 EVYQINGMNLWYG-------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred ceEEEeeEEEEEC-------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 4799999999984 3469999999999999999999999999999999999986 321247999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++. |++||+.+...... .....+..+++.++++.+++.+..... .+..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHH
Confidence 12469999999988885 99999987643321 112344556788899999986422111 12246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|+|++||++ ..+..+||++++|++|++++.|
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999986 4 68999999996 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 237 ~~~~ 240 (259)
T PRK14274 237 DTNK 240 (259)
T ss_pred CHHH
Confidence 9543
No 145
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=353.26 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=184.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGYG-------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEEC-------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 589999999983 34699999999999999999999999999999999999987 47999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... ..........+++.++++.++|.+..++. +.+|||||+||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 12459999999998888999999987531100 00111233456788999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ ..+.++||++++|++|++++.|+.++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9999999999999999999999999999999999999874 489999999996 57899999999999999999998654
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 225 ~ 225 (255)
T PRK11231 225 V 225 (255)
T ss_pred h
Confidence 3
No 146
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-47 Score=354.92 Aligned_cols=219 Identities=27% Similarity=0.357 Sum_probs=183.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... ...+.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAGT--PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCCC--ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccc
Confidence 489999999995211 0114699999999999999999999999999999999999987 47999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++ .+++ .||.||+.+..... .....+..+++.++++.++|.. ..++ .+.+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 124699999997 4555 69999998765322 1234455667889999999974 4444 356999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+..+..+++.|+++++ .|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999974 489999999996 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 226 ~g~~~~~ 232 (280)
T PRK13649 226 SGKPKDI 232 (280)
T ss_pred eCCHHHH
Confidence 9987654
No 147
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=367.76 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=179.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|++ ||++.|. ++. + |+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 l~~-~l~k~~~-------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQLG-------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEeC-------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 677 8999983 222 3 899999999999999999999999999999999874 7999999987521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|+||++.+|+.+||+||+.|+.. ....+++.++++.++|.+..++. +.+||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 13569999999999999999999987642 11245688999999998776654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999866689999999996 578999999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 214 ~~i 216 (352)
T PRK11144 214 EEV 216 (352)
T ss_pred HHH
Confidence 543
No 148
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.5e-47 Score=342.94 Aligned_cols=209 Identities=28% Similarity=0.395 Sum_probs=179.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++||++.|. .++.|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .
T Consensus 1 ~~~~~l~~~~~---------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE---------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC---------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChh
Confidence 47899999983 1467999999999999999999999999999999999874 7999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+...... ......++++.++++.++|.+..++ .+.+||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHH
Confidence 3569999999999999999999987543211 1122335678889999999776655 3579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+.+|++|||||||++||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999765689999999995 57888999999999999998875
No 149
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-47 Score=347.16 Aligned_cols=213 Identities=28% Similarity=0.452 Sum_probs=181.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .. ..||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 1 MLKLTDITWLYH-------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPP 68 (232)
T ss_pred CeEEEEEEEEEC-------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCCh
Confidence 378999999994 12 23899999999999999999999999999999999874 6999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
....++|++|++.+++.+|+.||+.++..... .. .....+++.++++.+||.+..++. +.+||||||||++|
T Consensus 69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 140 (232)
T PRK10771 69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVAL 140 (232)
T ss_pred hhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHH
Confidence 12469999999999999999999976532111 11 223456789999999998766664 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999765689999999996 57889999999999999999998543
No 150
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=353.97 Aligned_cols=221 Identities=26% Similarity=0.379 Sum_probs=186.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~ 74 (265)
T PRK10253 5 VARLRGEQLTLGYG-------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHY 74 (265)
T ss_pred ccEEEEEEEEEEEC-------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhC
Confidence 34799999999994 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
....++|++|++.+++.+|+.||+.+....... .........+++.++++.++|.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~ 149 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQR 149 (265)
T ss_pred CHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHH
Confidence 124699999999999989999999765211100 000112344578899999999776665 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999755589999999996 578999999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 229 ~~~ 231 (265)
T PRK10253 229 KEI 231 (265)
T ss_pred HHH
Confidence 654
No 151
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.6e-47 Score=348.83 Aligned_cols=216 Identities=27% Similarity=0.331 Sum_probs=180.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~-- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 1 LKIKDLHVSVE-------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELE 70 (243)
T ss_pred CeEeeEEEEEC-------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCC
Confidence 47899999994 346999999999999999999999999999999999995 44 57999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-C---CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC-CC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-D---SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR-GV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~---~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~-~L 211 (330)
....++|++|++.+++.+|+.|++.+....... . .....+..+++.++++.++|.+ ..++. +. +|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~L 145 (243)
T TIGR01978 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGF 145 (243)
T ss_pred HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCc
Confidence 123489999999999999999999876432110 0 0122334567889999999974 44443 34 59
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~i 290 (330)
|||||||++|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||+ ..+..+ ||++++|++|++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999974 589999999996 577787 899999999999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|+++.
T Consensus 224 ~~~g~~~~ 231 (243)
T TIGR01978 224 VKSGDVEL 231 (243)
T ss_pred EEecCHHH
Confidence 99998653
No 152
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.3e-47 Score=346.25 Aligned_cols=221 Identities=40% Similarity=0.675 Sum_probs=181.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
.+.++||++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|++++..+.+|+|.++|++... .
T Consensus 3 ~~~~~~~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWN---KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecCc---cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 468999999995211 13679999999999999999999999999999999999997211247999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
++.++|++|++.+++.+||.||+.++................++.+ +++.+++.+..++. +.+|||||+||++|
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 154 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSI 154 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHH
Confidence 3569999999999999999999988754332111122223334555 89999997666553 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++||++...+..+||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999874 48999999999634788999999999999998865
No 153
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-47 Score=354.95 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=186.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++++++|+++.|+. +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 5 ~~~l~~~nl~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~ 76 (271)
T PRK13632 5 SVMIKVENVSFSYPN-----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKE 76 (271)
T ss_pred ceEEEEEeEEEEcCC-----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcC
Confidence 457999999999942 1346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++. .++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 148 (271)
T PRK13632 77 NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQK 148 (271)
T ss_pred CHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHH
Confidence 1346999999984 677789999998765322 133445566789999999998776664 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++||++. .+. .||++++|++|++++.|+.
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999997554699999999964 564 7999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 227 ~~~ 229 (271)
T PRK13632 227 KEI 229 (271)
T ss_pred HHH
Confidence 543
No 154
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-47 Score=347.53 Aligned_cols=220 Identities=26% Similarity=0.361 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYN-------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEEC-------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 3689999999994 2469999999999999999999999999999999999854 421247999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++ +|+.||+.++..... ........+++.++++.+++.+..... .+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 1346999999998887 799999987653321 112233456778899999885321111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999986 3 58999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+.+
T Consensus 230 ~~~ 232 (252)
T PRK14239 230 DTK 232 (252)
T ss_pred CHH
Confidence 854
No 155
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-47 Score=422.57 Aligned_cols=243 Identities=32% Similarity=0.505 Sum_probs=214.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc----ccCcEEEEeCCCCCCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL----AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~ 158 (330)
.+.+|+|||+++++||+++|+||||||||||||+|+|+.... .+.+|+|.++|++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999997421 1358999999987531 23459999999999999
Q ss_pred CCHHHHHHHHHhhcCCC----CCCHHHHHHH-HHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 159 LTVMEAVYYSAQLQLPD----SMSRSEKRER-AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
+||+|+|.|++.++.+. ..++++..++ ++++++.+||.+..++++++..+++|||||||||+||++|+.+|++|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999987665321 1234443333 567899999999999999988899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCC
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSL 313 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~ 313 (330)
|||||+|||+.++..+++.|++++++.|.|||+++||+...+.++||++++|++|++++.|+++++.++|++.|+.||..
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999866699999999997678999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhcc
Q 038004 314 RNPSDHYLRTINK 326 (330)
Q Consensus 314 ~~p~~~~~~~l~~ 326 (330)
.||+|++++..++
T Consensus 313 ~n~aDfl~~~~~~ 325 (1394)
T TIGR00956 313 QTTADFLTSLTSP 325 (1394)
T ss_pred CChHHHHHhccCh
Confidence 9999999887764
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-47 Score=351.84 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=185.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~ 76 (269)
T PRK13648 5 NSIIVFKNVSFQYQS-----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDD 76 (269)
T ss_pred CceEEEEEEEEEcCC-----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcC
Confidence 357999999999942 123589999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++. +++..|+.+|+.+..... ........+++.++++.+++.+..++. +.+||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 148 (269)
T PRK13648 77 NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQK 148 (269)
T ss_pred CHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 1346999999985 677789999998765422 123445556788999999998766653 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+.. ||++++|++|++++.|++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~ 226 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTP 226 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999755589999999996 46664 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 227 ~~~ 229 (269)
T PRK13648 227 TEI 229 (269)
T ss_pred HHH
Confidence 654
No 157
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.7e-47 Score=367.90 Aligned_cols=207 Identities=29% Similarity=0.439 Sum_probs=179.2
Q ss_pred eEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------
Q 038004 70 DLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-------- 141 (330)
Q Consensus 70 nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-------- 141 (330)
||++.|. ++. + |+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~~-------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRLG-------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEEC-------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccc
Confidence 7888883 233 4 999999999999999999999999999999999874 7999999987521
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+|+.+||.||+.|+.... ...+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 1346999999999999999999998865321 1234456789999999998776654 5799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++|||+ .++..+||++++|++|++++.|+++++
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999999999999866689999999996 578899999999999999999986543
No 158
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=332.04 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=197.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.+.+.+++.+|... ...+|+|||++|.+||.++++||||||||||+|+++|+..|. .|+|.+||++++....
T Consensus 3 ~l~~~~~sl~y~g~-----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga 74 (259)
T COG4525 3 MLNVSHLSLSYEGK-----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA 74 (259)
T ss_pred eeehhheEEecCCc-----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc
Confidence 46788999999532 256999999999999999999999999999999999999884 6999999998876656
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.-|.|||++.|+|.+++.+|+.|+..++ ++.+.++++++.+.+..+||.+..++ ++.+|||||||||.||||
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHHH
Confidence 6799999999999999999999999875 46788999999999999999987765 467999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHHHH
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTEQL 302 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~~~ 302 (330)
|+.+|++|+||||+++||.-++.++.++|.++.++.|+.+++||||++ +..-++++++||.. |+|++.-+++-...+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999999999999999999889999999999974 67788999999985 899988877633333
No 159
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-47 Score=356.17 Aligned_cols=222 Identities=24% Similarity=0.384 Sum_probs=186.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+.... .+.+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~-~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE-STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCCC-CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccc
Confidence 47999999999953210 0134699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|+||++. .+...||.+++.|+.... .....+..+++.++++.+||.+..++. +.+||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred cHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 1356999999974 223469999998875422 234455667889999999998776664 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++. .+.. ||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999997656999999999964 6655 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 229 ~~~ 231 (280)
T PRK13633 229 KEI 231 (280)
T ss_pred HHH
Confidence 654
No 160
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=350.12 Aligned_cols=222 Identities=26% Similarity=0.381 Sum_probs=182.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. .+.+|+|+++|+++.
T Consensus 17 ~~~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYG-------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEEC-------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 45799999999993 346999999999999999999999999999999999998741 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. |+.||+.++...+.. ........+++.++++.++|.+...... +..+.+|||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 166 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSG 166 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCH
Confidence 1 12469999999988875 999999886543211 0123344567889999999964221111 124679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+..+..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 3 68999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 244 g~~~ 247 (267)
T PRK14235 244 GDTE 247 (267)
T ss_pred CCHH
Confidence 9854
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=343.92 Aligned_cols=213 Identities=28% Similarity=0.474 Sum_probs=184.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++|+++.|. . ++|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~-------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDWK-------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEeC-------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChh
Confidence 46899999983 2 379999999999999999999999999999999999987 46999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.++|.+..++. +++|||||+||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 357999999999999999999998765332 123445566788999999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|+++||||||+|||+.++..+++.|++++++.|.|+|++||++ ..+.++||++++|++|++++.|+.++
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999765589999999996 57889999999999999999998543
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=343.28 Aligned_cols=213 Identities=28% Similarity=0.468 Sum_probs=185.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~-------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFYG-------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChh
Confidence 46899999983 346999999999999999999999999999999999999874 6999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.+|+.+....+ ........+++.++++.+||.+..++. +.+|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 356999999999998999999998765432 123344566788999999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999765589999999995 5788999999999999999999853
No 163
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-47 Score=353.51 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.. ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEKE----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCCC----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCH
Confidence 68999999999521 124599999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++. +++..||.||+.++.... .....+..+++.++++.+||.+..++ ++.+||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHH
Confidence 1346999999984 677789999998764321 12344555678999999999876665 357999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+. .||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999865699999999996 4565 699999999999999999754
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 227 ~ 227 (277)
T PRK13642 227 L 227 (277)
T ss_pred H
Confidence 3
No 164
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=332.72 Aligned_cols=219 Identities=30% Similarity=0.422 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.|+++||.+.| +...+|++||++.++|+++.|||.|||||||+|+||.-|..|+ .|.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~-------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~ 74 (256)
T COG4598 5 NALEVEDLHKRY-------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKR 74 (256)
T ss_pred cceehhHHHhhc-------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeee
Confidence 468999999998 5678999999999999999999999999999999999998874 6999999986421
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
.+.+.++|||+..|+.+|||.||+..+.. +. .+.++.+..++++.+|..+||.+..+.
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~---- 148 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADA---- 148 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhc----
Confidence 01247999999999999999999977542 22 146788899999999999999877663
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||..|||||+||++|||||+.+|+++++|||||+|||...-++++.++++++ .|+|++++||.+ .+.++.+.+|++|
T Consensus 149 -YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM-~FAR~Vss~v~fL 225 (256)
T COG4598 149 -YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEM-GFARDVSSHVIFL 225 (256)
T ss_pred -CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeeh-hHHHhhhhheEEe
Confidence 6789999999999999999999999999999999999999999999999985 599999999996 6899999999999
Q ss_pred eCCeEEEEcChhhHHHHHH
Q 038004 286 AYGKTIYFGPASMTEQLFA 304 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~ 304 (330)
++|.|-++|+|+ ++|.
T Consensus 226 h~G~iEE~G~P~---qvf~ 241 (256)
T COG4598 226 HQGKIEEEGPPE---QVFG 241 (256)
T ss_pred ecceecccCChH---HHhc
Confidence 999999999974 5674
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=345.43 Aligned_cols=219 Identities=25% Similarity=0.403 Sum_probs=180.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~~- 141 (330)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ..+++|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 3 KISVKDLDLFYG-------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred eEEEEEEEEEEC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 488999999994 24699999999999999999999999999999999998753 11247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.++|++|++.+++ +|+.||+.+...... ........+++.++++.+++.+..... .+.++.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~ 151 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDR-LKKSALGLSGGQ 151 (250)
T ss_pred ccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHH-HhcCCCCCCHHH
Confidence 1346999999998887 899999988653321 112344566788889999875322111 122467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 4 78999999995 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
.+
T Consensus 229 ~~ 230 (250)
T PRK14240 229 TV 230 (250)
T ss_pred HH
Confidence 54
No 166
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=347.80 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=182.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYG-------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEEC-------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc
Confidence 689999999994 246999999999999999999999999999999999998642 1247999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+||.||+.++...+. ........+++.++++.++|.+..... .+.++.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~ 153 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDR-LDKPGGGLSGGQ 153 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHH
Confidence 12469999999999999999999987654321 113345566788999999985321111 122467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCe
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGK 289 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~ 289 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|+ +|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 999999999999999999999999999999999999999995 3 58999999996 57889999999997 799
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 231 i~~~~~~~~ 239 (258)
T PRK14241 231 LVEIDDTEK 239 (258)
T ss_pred EEecCCHHH
Confidence 999998543
No 167
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-47 Score=355.59 Aligned_cols=220 Identities=20% Similarity=0.274 Sum_probs=182.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... .....+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 6 ~l~i~nl~~~~~~~~--~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT--PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC--ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccccc
Confidence 489999999994210 0013599999999999999999999999999999999999987 47999999986421
Q ss_pred -------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
.++.++|++|++. +++ .|+.||+.++.... .....+..+++.++++.++|. +..++ ++.+|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 1246999999973 444 59999998765321 123444556788899999995 45554 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++||++ ..+..+||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 231 ~~g~~~~~ 238 (289)
T PRK13645 231 SIGSPFEI 238 (289)
T ss_pred EeCCHHHH
Confidence 99987654
No 168
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=349.00 Aligned_cols=221 Identities=22% Similarity=0.334 Sum_probs=179.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.++++++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|+++.
T Consensus 19 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 19 EHILEVKDLSIYYG-------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CceEEEEEEEEEeC-------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 35799999999984 3469999999999999999999999999999999999864 21135799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.+...... ........+.+.++++.+++...... ..+..+.+|||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSg 167 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKD-RLHSSALSLSG 167 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcccCCH
Confidence 1 13469999999988885 99999987643221 11223344567888999988532111 11224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999996 3 68999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 245 ~~~~ 248 (268)
T PRK14248 245 DQTE 248 (268)
T ss_pred CCHH
Confidence 9854
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=347.85 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
..+|+++||++.|. .+.+|+||||+|++||++||+|+||||||||+++|+|+++|. .+++|+|.++|+++.
T Consensus 18 ~~~l~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 18 EIALSTKDLHVYYG-------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CeEEEEeeEEEEEC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 45799999999983 356999999999999999999999999999999999998642 135799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ .||.||+.++.... ..........++.++++.++|.+..... .+.++.+|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~ 166 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDD-LHKSALTLSG 166 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhh-hcCCcccCCH
Confidence 1 1346999999998887 59999998865321 1123344556788899999986432111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4 68999999996 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 244 g~~~~ 248 (267)
T PRK14237 244 DKTRN 248 (267)
T ss_pred CCHHH
Confidence 99543
No 170
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=345.52 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|. .+.+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYG-------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEEC-------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 5789999999983 346999999999999999999999999999999999998641 1247999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.++|.+.... ..+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G 151 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGG 151 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHH
Confidence 1346999999999887 899999987654321 11234455678889999988532111 112246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999864 58999999996 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 229 ~~~~ 232 (251)
T PRK14270 229 KTEK 232 (251)
T ss_pred CHHH
Confidence 8543
No 171
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.8e-47 Score=346.07 Aligned_cols=200 Identities=30% Similarity=0.468 Sum_probs=172.4
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----ccCcEEEEe-CCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----AFGTSAYVT-QEDTLMT 157 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~-Q~~~l~~ 157 (330)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++... ....++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4567999999999999999999999999999999999999874 7999999986421 234699998 5567888
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
.+|+.|++.+...+. .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++||||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998765432 123445556788899999998777664 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+|||+..+..+.++|++++++.+.|||++||++ ..+..+||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999766689999999996 5788999999999999998764
No 172
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.9e-47 Score=342.69 Aligned_cols=208 Identities=29% Similarity=0.436 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~ 144 (330)
|+++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+.... ..
T Consensus 1 l~l~~v~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFG-------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccccc
Confidence 47899999983 34699999999999999999999999999999999999987 479999999865321 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+|+.||+.+...... .. ..++.++++.++|.+..++. +.+|||||+||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 69999999999999999999987654321 11 24578899999998776654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++.
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999974 589999999996 5788999999999999999999864
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.3e-46 Score=343.96 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=185.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++|+++.|+ .+.+|+|+||++.+||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... .
T Consensus 1 i~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRFG-------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEEC-------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChh
Confidence 47899999984 34699999999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+..... ........+.+.++++.+++.+..++. +.+|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 346999999999999999999998765432 123344456788999999998766654 469999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|+++||||||+|||+.++..+++.|++++++.|.|||++||++ ..+.++||++++|++|++++.|+.++
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999998755589999999996 57889999999999999999998543
No 174
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=350.41 Aligned_cols=219 Identities=20% Similarity=0.358 Sum_probs=179.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+++|+|.++|+++.
T Consensus 11 ~~~l~i~nl~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 11 NIIISLQNVTISYG-------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CceEEEEeEEEEEC-------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45799999999993 346999999999999999999999999999999999998631 125799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. ||.||+.+..... ... ....+++.++++.+++...... ..+.++.+|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKD-KLNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhh-hhCCCcccCCH
Confidence 1 12469999999988884 9999998765432 112 2334567788999887432111 11234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY------ 287 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~------ 287 (330)
|||||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999985 4 68999999996 588999999999996
Q ss_pred -----CeEEEEcChh
Q 038004 288 -----GKTIYFGPAS 297 (330)
Q Consensus 288 -----G~iv~~g~~~ 297 (330)
|++++.|+++
T Consensus 235 ~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 235 SGGKVGYLVEFNETK 249 (269)
T ss_pred cccccceEEEeCCHH
Confidence 6789999854
No 175
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8.6e-47 Score=348.69 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSAG-------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHH
Confidence 68999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.++|.+..++. +.+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 124699999999888889999999875311000 0011223445788999999997666654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999999999999999974 589999999996 578899999999999999999987653
No 176
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=344.26 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=179.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 4 IISAKDVHLSYG-------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred eEEEEeeEEEEC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 689999999993 2469999999999999999999999999999999999986 211247999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++ .||.||+.++..... ........+++.++++.+++.. ..++ .+.+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 148 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAF 148 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhC
Confidence 1346999999998886 799999987653221 1122334466788999999852 2233 45799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||++||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|+++
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCH-HHHHhhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 3 68999999996 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 226 ~~~~~~ 231 (251)
T PRK14251 226 EAGPTE 231 (251)
T ss_pred EeCCHH
Confidence 999854
No 177
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=344.26 Aligned_cols=222 Identities=26% Similarity=0.398 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~ 141 (330)
.+++++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 3 LLLSAQDVNIYYG-------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEEeeeEEEEC-------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 3689999999983 3469999999999999999999999999999999999987631 137999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+.+.++++.+++....... .+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 12469999999999999999999987653221 112334456677778888764322111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999986 4 69999999996 5788899999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 230 ~~~~ 233 (252)
T PRK14272 230 PTDQ 233 (252)
T ss_pred CHHH
Confidence 8543
No 178
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-47 Score=421.26 Aligned_cols=243 Identities=36% Similarity=0.601 Sum_probs=213.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCCH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv 161 (330)
++.+|+|||+.|++||+++|+||||||||||||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4679999999999999999999999999999999999997743347999999987632 24569999999999999999
Q ss_pred HHHHHHHHhhcCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 162 MEAVYYSAQLQLPD-------SMSRSEK------------------------RERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 162 ~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
+|+|.|++.++... ..+..+. ...++.+++.+||.++.++.+++..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999987654211 0111111 1235779999999999999999888999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++..|.|+|+++|++..++.++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998767999999999976789999999999999999
Q ss_pred EEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhcc
Q 038004 291 IYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINK 326 (330)
Q Consensus 291 v~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~~ 326 (330)
+++|+.+++.++|++.|+.||...||+|+++...++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~ 452 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSK 452 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCc
Confidence 999999999999999999999999999999887653
No 179
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-46 Score=344.95 Aligned_cols=216 Identities=26% Similarity=0.344 Sum_probs=179.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-----
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----- 138 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~----- 138 (330)
++|+++||++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 71 (253)
T TIGR02323 2 PLLQVSGLSKSYG-------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELE 71 (253)
T ss_pred ceEEEeeeEEEeC-------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccc
Confidence 3689999999994 245899999999999999999999999999999999999874 7999999875
Q ss_pred ccc---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 139 ETL---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 139 ~~~---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
+.. ..+.++|++|++. +++.+|+.+|+.+...... ........+++.++++.+++.+ ..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~----- 144 (253)
T TIGR02323 72 LYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDD----- 144 (253)
T ss_pred cccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhc-----
Confidence 321 1235899999974 5567799999976432111 0111234567889999999963 4554
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
.+.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|+
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~ 223 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQ 223 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 35799999999999999999999999999999999999999999999998755689999999995 57888999999999
Q ss_pred CCeEEEEcChh
Q 038004 287 YGKTIYFGPAS 297 (330)
Q Consensus 287 ~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 224 ~G~i~~~~~~~ 234 (253)
T TIGR02323 224 QGRVVESGLTD 234 (253)
T ss_pred CCEEEEECCHH
Confidence 99999999854
No 180
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=343.95 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+++|+|.++|+++..
T Consensus 5 ~~i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 5 IILSTKNLNLWYG-------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred ceEEEeeeEEEEC-------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 4799999999983 346999999999999999999999999999999999997531 1247999999987532
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+..... .+..+.+||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHH
Confidence 13469999999988885 99999988754321 112234456788889999885422111 12246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcC
Confidence 99999999999999999999999999999999999999999863 58999999995 5788899999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+++
T Consensus 231 ~~~ 233 (253)
T PRK14261 231 KTT 233 (253)
T ss_pred CHH
Confidence 954
No 181
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-47 Score=339.31 Aligned_cols=204 Identities=26% Similarity=0.419 Sum_probs=174.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
+++ ||++.|. ++.+ ||||+|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~~~-~l~~~~~-------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 67 (214)
T cd03297 2 LCV-DIEKRLP-------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKK 67 (214)
T ss_pred cee-eeeEecC-------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccch
Confidence 344 8999983 3334 99999999 999999999999999999999999874 7999999986421
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.+|+.+..... .....++++.++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 137 (214)
T cd03297 68 INLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEK 137 (214)
T ss_pred hhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHH
Confidence 1246999999999999999999998764321 2234456788999999998766653 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 138 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999765689999999995 5788999999999999998765
No 182
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=344.28 Aligned_cols=219 Identities=23% Similarity=0.378 Sum_probs=179.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~-- 141 (330)
-+++||++.|. .+.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 78 (251)
T PRK14244 6 ASVKNLNLWYG-------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78 (251)
T ss_pred EEeeeEEEEEC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc
Confidence 47899999983 3469999999999999999999999999999999999986 221257999999986521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++. |+.||+.+....+. .........+.+.++++.++|.+.....+ +..+.+||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~ 155 (251)
T PRK14244 79 TNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQ 155 (251)
T ss_pred cchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHH
Confidence 13469999999988886 99999987643321 11122344566888999999965321111 124579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + |.|||++||++ ..+.++||++++|++|++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 4 79999999996 578899999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 233 ~ 233 (251)
T PRK14244 233 Q 233 (251)
T ss_pred H
Confidence 3
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=343.14 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++ ..+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 3 IIEIENFSAYYG-------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred eEEEEeeEEEeC-------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 689999999983 34699999999999999999999999999999999999873 11247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ +|++||+.+...... .......++.+.++++.+++.+.... ..+..+.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq 151 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQ 151 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHH
Confidence 1346999999999887 899999987653321 11233445667889999998643211 1123567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999986 4 68999999996 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14262 229 TRE 231 (250)
T ss_pred HHH
Confidence 643
No 184
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.9e-47 Score=344.31 Aligned_cols=199 Identities=31% Similarity=0.498 Sum_probs=171.8
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYY 167 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~ 167 (330)
|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999987 4799999998764322235899999999999999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~ 247 (330)
+...... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+|||+..+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445566788999999998766654 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 248 HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
.+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCc
Confidence 999999999766689999999996 578899999999999999998874
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-47 Score=380.19 Aligned_cols=220 Identities=25% Similarity=0.380 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +++|+|.++|+++..
T Consensus 4 ~~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 4 YLLEMKNITKTFG-------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASN 75 (506)
T ss_pred ceEEEeeeEEEeC-------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCC
Confidence 4799999999983 346999999999999999999999999999999999999751 247999999987632
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||+||+.++...+........+..+++.++++.++|.+..++. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 1246999999999999999999998865322111123344556789999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||++||+..+..++++|.++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccc
Confidence 99999999999999999999999999999999999999974 589999999996 5788999999999999999999875
Q ss_pred h
Q 038004 298 M 298 (330)
Q Consensus 298 ~ 298 (330)
+
T Consensus 229 ~ 229 (506)
T PRK13549 229 G 229 (506)
T ss_pred c
Confidence 4
No 186
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.3e-46 Score=339.88 Aligned_cols=211 Identities=31% Similarity=0.500 Sum_probs=180.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+.+. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~---~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 74 (220)
T TIGR02982 1 VISIRNLNHYYGHGS---LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASE 74 (220)
T ss_pred CEEEEEEEEEccCCC---cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCH
Confidence 378999999985211 125799999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~ 147 (220)
T TIGR02982 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQK 147 (220)
T ss_pred hHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHH
Confidence 12469999999999998999999988654321 123455567789999999997766654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++.++.+.|||++||++ . +..+||++++|++|++
T Consensus 148 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 148 QRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999765689999999996 4 4589999999999986
No 187
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.2e-47 Score=379.57 Aligned_cols=218 Identities=23% Similarity=0.363 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+|+||+|.+||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 3 ~~i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~ 72 (501)
T PRK10762 3 ALLQLKGIDKAFP-------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNG 72 (501)
T ss_pred ceEEEeeeEEEeC-------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 3699999999993 346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||+||+.++..... .......+.++++.++++.+||.+..++. +.+||||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 147 (501)
T PRK10762 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQ 147 (501)
T ss_pred HHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHH
Confidence 12469999999999999999999988643211 01123344556788999999998776654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999999974 589999999996 578899999999999999999987
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 226 ~~ 227 (501)
T PRK10762 226 AD 227 (501)
T ss_pred Cc
Confidence 54
No 188
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=343.35 Aligned_cols=219 Identities=24% Similarity=0.339 Sum_probs=180.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~- 141 (330)
.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++.. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 3 KFNIENLDLFYG-------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred eEEEeccEEEEC-------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 589999999984 3469999999999999999999999999999999999987520 247999999986521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++ .||.||+.++..... ........+++.++++.+++.+..... .+..+.+||||||
T Consensus 76 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~ 151 (249)
T PRK14253 76 IDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDR-LKSHAFGLSGGQQ 151 (249)
T ss_pred cchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHH-hhcCcccCCHHHH
Confidence 1246999999999887 799999987643221 112334456778889999885432111 1224679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999963 58999999995 578999999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 229 ~ 229 (249)
T PRK14253 229 Q 229 (249)
T ss_pred H
Confidence 4
No 189
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.4e-46 Score=347.22 Aligned_cols=223 Identities=26% Similarity=0.361 Sum_probs=184.9
Q ss_pred eEEEEeEEEEecCCc--ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGK--KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+.+. +....+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccc
Confidence 589999999995210 000135699999999999999999999999999999999999987 47999999986521
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++ .+++..|+.+++.+...... .....+...++.++++.+|+. ...++ .+.+|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccC
Confidence 134699999997 46778999999876543111 123445556789999999996 44454 35699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|+|++||++ ..+..+||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999765689999999995 5788899999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 232 ~~g~~~~ 238 (268)
T PRK10419 232 ETQPVGD 238 (268)
T ss_pred eeCChhh
Confidence 9998654
No 190
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=351.19 Aligned_cols=222 Identities=28% Similarity=0.387 Sum_probs=183.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-----CCccEEEECCEec
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-----EQTGEILINGRKE 139 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-----~~~G~I~~~g~~~ 139 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARR-------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEEC-------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 378999999983 3469999999999999999999999999999999999998730 0169999999875
Q ss_pred cc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 140 TL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 140 ~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
.. ..+.++|++|++.+++.+|+.||+.++...... ......+..+++.++++.++|.+..++ ++.+|||
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSg 148 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSG 148 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCH
Confidence 32 123589999998766678999999875321100 011113345678899999999876655 3579999
Q ss_pred HHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 214 GQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 214 GqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
||||||+|||||+ .+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~ 227 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEE
Confidence 9999999999999 599999999999999999999999999999765589999999996 578889999999
Q ss_pred EeCCeEEEEcChhhH
Q 038004 285 LAYGKTIYFGPASMT 299 (330)
Q Consensus 285 l~~G~iv~~g~~~~~ 299 (330)
|++|++++.|+++++
T Consensus 228 l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 228 LADGAIVAHGAPADV 242 (272)
T ss_pred EECCeEEEecCHHHH
Confidence 999999999987654
No 191
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-46 Score=341.63 Aligned_cols=220 Identities=24% Similarity=0.360 Sum_probs=179.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ .+.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |..+++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 4 KIITSSDVHLFYG-------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred ceEEEEeEEEEEC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 4789999999994 2469999999999999999999999999999999999875 321247999999986521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.+|+.+...... ........+++.++++.+++....... .+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 1346999999998888 699999987654321 112223345677788888874221111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999964 48999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
++.
T Consensus 230 ~~~ 232 (252)
T PRK14255 230 DTK 232 (252)
T ss_pred CHH
Confidence 853
No 192
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=335.30 Aligned_cols=196 Identities=35% Similarity=0.607 Sum_probs=165.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.+.|+||++.|+.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|++++..+++|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~---~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKGR---SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccCC---CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchh
Confidence 589999999997542 35679999999999999999999999999999999999998322357999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.+..... .++ ++.+||||||||++
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~ 128 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVS 128 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHH
Confidence 2356999999999999999999997653210 122 35689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+.+|++|||||||+|||+.++..++++|++++++.+.|+|+++|+....+.++||++++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999976556777766655345788999999999999998764
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=342.37 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=181.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~ 141 (330)
+.++++||++.|. .+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|.. +.+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~~-------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYH-------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEEC-------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 4689999999983 2469999999999999999999999999999999999998731 136999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++. |+.||+.+....+. ........+.+.++++.++|.+.... ..+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 151 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGG 151 (251)
T ss_pred cccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHH
Confidence 13569999999998875 99999987654321 11122344567788888887543221 122356799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+..+..+.++|+++. + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeC
Confidence 9999999999999999999999999999999999999999984 3 79999999995 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+++
T Consensus 229 ~~~ 231 (251)
T PRK14249 229 RTG 231 (251)
T ss_pred CHH
Confidence 854
No 194
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-46 Score=343.52 Aligned_cols=222 Identities=25% Similarity=0.348 Sum_probs=183.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~- 141 (330)
.|+++||++.|. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++++. ..+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 7 AIKVNNLSFYYD-------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred eEEEeeEEEEeC-------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 689999999983 2369999999999999999999999999999999999998631 136999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.+++.+..... .+..+.+|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq 155 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSGGQ 155 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHH
Confidence 1345999999998888 899999987643221 112334456788899999985432211 123567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-----CeE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-----GKT 290 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-----G~i 290 (330)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+.++||++++|++ |++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceE
Confidence 99999999999999999999999999999999999999998755689999999996 588999999999999 999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|++++
T Consensus 235 ~~~~~~~~ 242 (261)
T PRK14258 235 VEFGLTKK 242 (261)
T ss_pred EEeCCHHH
Confidence 99999654
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-46 Score=346.26 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. .+.+|+|.++|.++.
T Consensus 19 ~~~l~i~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFA-------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEEC-------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 46899999999994 356999999999999999999999999999999999998751 124799999998753
Q ss_pred c------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 L------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ~------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
. ....++|++|++.+++ +|+++|+.++..... ..+..+...++.++++.++|.....+.+ +..+.+||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 1 1346999999999888 799999987643221 1234445566788899999975332211 1246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999863 48999999995 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 245 ~~~~ 248 (276)
T PRK14271 245 PTEQ 248 (276)
T ss_pred CHHH
Confidence 8543
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.9e-46 Score=379.65 Aligned_cols=238 Identities=25% Similarity=0.428 Sum_probs=194.0
Q ss_pred ceeEEEEeEEEEecCCcc----cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 63 GVFLTWKDLSVVVPSGKK----ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~----~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|+++||++.|+.+.. ..+.+.+|+||||+|++||++||+||||||||||+|+|+|+++ . +|+|+++|++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEE
Confidence 357999999999942100 0013569999999999999999999999999999999999984 2 6999999986
Q ss_pred ccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038004 139 ETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWN 207 (330)
Q Consensus 139 ~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~ 207 (330)
+.. .+..++||+|++ .+++.+||.||+.++...+.. .....+.++++.++++.++|. ...++ +
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 422 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----Y 422 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----C
Confidence 531 124599999997 488889999999886532211 123344557788999999997 34554 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQ 501 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEEC
Confidence 5799999999999999999999999999999999999999999999999865689999999996 578899999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 288 GKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 288 G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|++++.|++ .+++ .+|.+.|++.+
T Consensus 502 G~i~~~~~~---~~~~----------~~~~~~~~~~~ 525 (529)
T PRK15134 502 GEVVEQGDC---ERVF----------AAPQQEYTRQL 525 (529)
T ss_pred CEEEEEcCH---HHHh----------cCCCChHHHHH
Confidence 999999984 4445 25667777654
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=379.09 Aligned_cols=218 Identities=25% Similarity=0.359 Sum_probs=186.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~ 73 (510)
T PRK09700 4 PYISMAGIGKSFG-------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLD 73 (510)
T ss_pred ceEEEeeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCC
Confidence 4799999999983 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCC---CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDS---MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
....++||+|++.+++.+||.||+.++..... ... ....+..+++.++++.+||.+..++. +.+|||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 148 (510)
T PRK09700 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSI 148 (510)
T ss_pred HHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCH
Confidence 12469999999999999999999987532110 001 12334557789999999998766654 569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.
T Consensus 149 G~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 149 SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999999999999999999975 489999999995 588899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 227 g~~~~ 231 (510)
T PRK09700 227 GMVSD 231 (510)
T ss_pred cchhh
Confidence 98764
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-46 Score=343.90 Aligned_cols=221 Identities=23% Similarity=0.348 Sum_probs=182.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC--CccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE--QTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~--~~G~I~~~g~~~~~ 141 (330)
..|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++..+ ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 6 PAIKVKDLSFYYN-------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred ceEEEEEEEEEEC-------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 3689999999983 34699999999999999999999999999999999999875322 37999999986521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
....++|++|++.+++ +|+.||+.++..... ........+++.++++.+++.+.... ..+.++.+||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHH
Confidence 1246999999999887 899999987654321 12333445678889999998532111 112356799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-----CCe
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-----YGK 289 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-----~G~ 289 (330)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|+ +|+
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 9999999999999999999999999999999999999999986 3 58999999996 58899999999998 599
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 232 i~~~~~~~~ 240 (259)
T PRK14260 232 MVEFGVTTQ 240 (259)
T ss_pred EEEeCCHHH
Confidence 999999643
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-46 Score=348.30 Aligned_cols=218 Identities=24% Similarity=0.381 Sum_probs=180.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|+++.
T Consensus 37 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 37 KPHVVAKNFSIYYG-------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred ceEEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 45799999999983 2459999999999999999999999999999999999864 21125799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCC
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~ 209 (330)
. .++.++|++|++.+++. ||.||+.++..... .......++++.++++.+++.. ..++ ++.
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 181 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NAL 181 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chh
Confidence 1 13469999999988875 99999988654321 1122334567788899998742 3333 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ . +.|||++||++ ..+..+||++++|++|+
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~ 258 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNM-QQASRVSDYTMFFYEGV 258 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999986 3 58999999996 57889999999999999
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 259 i~~~g~~~~ 267 (286)
T PRK14275 259 LVEHAPTAQ 267 (286)
T ss_pred EEEeCCHHH
Confidence 999998543
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-46 Score=345.36 Aligned_cols=221 Identities=22% Similarity=0.352 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|.++|+++.
T Consensus 22 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 22 KVVFDTQNLNLWYG-------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred ceEEEEeeeEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 45799999999984 2468999999999999999999999999999999999986 21125799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.++..... .......++.+.++++.+++....... .+.++.+|||
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSg 170 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSG 170 (271)
T ss_pred cccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCH
Confidence 1 13469999999988874 99999988653221 112223345567778877653221111 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 4 68999999995 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 248 g~~~ 251 (271)
T PRK14238 248 DDTD 251 (271)
T ss_pred CCHH
Confidence 9853
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-46 Score=344.90 Aligned_cols=219 Identities=21% Similarity=0.350 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++ ..+++|+|+++|+++.
T Consensus 8 ~~~l~i~~v~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 8 ETVLRTENLNVYYG-------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred ceEEEEeeeEEEEC-------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence 45899999999983 34699999999999999999999999999999999999753 1124799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.++.... ... ....+++.++++.+++.+..... .+..+.+|||
T Consensus 81 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 154 (264)
T PRK14243 81 APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSG 154 (264)
T ss_pred ccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCH
Confidence 1 13469999999988874 9999998765322 111 23345677788888875322111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
|||||++|||||+.+|++|||||||+|||+..+..++++|.++++ +.|||++||++ ..+..+||++++|+
T Consensus 155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999999963 58999999995 58999999999998
Q ss_pred --CCeEEEEcChh
Q 038004 287 --YGKTIYFGPAS 297 (330)
Q Consensus 287 --~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 232 ~~~g~i~~~~~~~ 244 (264)
T PRK14243 232 GRYGYLVEFDRTE 244 (264)
T ss_pred ccCceEEEeCCHH
Confidence 89999999853
No 202
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.9e-46 Score=342.00 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=179.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~~~-- 141 (330)
.|+++||++.|. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|.. +++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQAA--------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEec--------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc
Confidence 589999999981 358999999999999999999999999999999999997621 147999999987532
Q ss_pred -ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCCCCCCCHHH
Q 038004 142 -AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA---MDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~~~~~~LSGGq 215 (330)
..+.++||+|++. +.+.+|+.+++.+...... ... ..+++.++++.++|.+. .++ .+.+|||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq 145 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGM 145 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHH
Confidence 1246999999984 5567899999876543221 111 23678899999999762 343 457999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999765689999999996 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 225 ~~~ 227 (254)
T PRK10418 225 VET 227 (254)
T ss_pred HHH
Confidence 543
No 203
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=344.73 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=179.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|+++.
T Consensus 18 ~~~l~~~nl~~~~~-------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CceEEEeeEEEEeC-------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 45899999999983 346999999999999999999999999999999999998631 124799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.+|+.++..... .. ....+.+.++++.+++....... .+.++.+|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 13469999999988875 99999987643221 11 12334567788888874322111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999996 4 68999999996 58889999999998
Q ss_pred --CCeEEEEcChhh
Q 038004 287 --YGKTIYFGPASM 298 (330)
Q Consensus 287 --~G~iv~~g~~~~ 298 (330)
+|++++.|++++
T Consensus 242 ~~~G~~~~~g~~~~ 255 (274)
T PRK14265 242 KRRGKLVEFSPTEQ 255 (274)
T ss_pred ccCceEEEeCCHHH
Confidence 899999999643
No 204
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.7e-46 Score=375.95 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=185.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQYS-------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEeC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 4799999999993 346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++.+++.+||.||+.++... ....++++.++++.++|.+..++. +.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 123599999999999999999999875321 123456788999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChH
Confidence 99999999999999999999999999999999999999975 589999999995 5788999999999999999999876
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 226 ~~ 227 (510)
T PRK15439 226 DL 227 (510)
T ss_pred Hc
Confidence 43
No 205
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=352.30 Aligned_cols=223 Identities=23% Similarity=0.352 Sum_probs=183.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...++++|+++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|+.++. .+.+|+|.++|+++.
T Consensus 78 ~~~i~~~nls~~y~~-----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CceEEEEeeEEEecC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 347999999999952 1346999999999999999999999999999999999998631 124799999999863
Q ss_pred -------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 141 -------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS-RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..++.++||||++.+++ .|++||+.|+.... ... .....+.+.++++.++|.+..+..+. .++.+||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 12356999999999885 69999998865322 122 22234457888999988644333332 3567999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++ ..+.++||+|++|++|++++
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999863 69999999996 57888999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 305 ~g~~~~ 310 (329)
T PRK14257 305 AGETKT 310 (329)
T ss_pred eCCHHH
Confidence 999543
No 206
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-45 Score=343.44 Aligned_cols=219 Identities=25% Similarity=0.370 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|+++.
T Consensus 37 ~~~l~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 37 ETVIEARDLNVFYG-------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CceEEEEEEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 45799999999983 3469999999999999999999999999999999999986311 25799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. ||.||+.+...... ... ...+++.++++.++|....... .+.++.+|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCH
Confidence 1 13469999999988885 99999987654321 222 3456788999999985321111 1124679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE-EEeCCeEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC-LLAYGKTIY 292 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~-vl~~G~iv~ 292 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||+++ +|++|++++
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 999999999999999999999999999999999999999999974 47999999995 57889999975 579999999
Q ss_pred EcChh
Q 038004 293 FGPAS 297 (330)
Q Consensus 293 ~g~~~ 297 (330)
.|+++
T Consensus 261 ~g~~~ 265 (285)
T PRK14254 261 FDDTD 265 (285)
T ss_pred eCCHH
Confidence 99854
No 207
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=328.69 Aligned_cols=235 Identities=30% Similarity=0.401 Sum_probs=195.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||+++. .++.+|++|||++++||++||+||||||||||||.|+|.+.|+ +|++.++|.+....
T Consensus 1 mi~a~nls~~~-------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL-------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe-------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCH
Confidence 47899999997 3567999999999999999999999999999999999999874 69999999876321
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++-+.++|+..+-+.+||.|.+.++..-+.. .....+..+.++++|+..++..+..+.+ .+|||||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRV 144 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRV 144 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHH
Confidence 24568899999887778999999988643211 2233456677899999999998887765 49999999999
Q ss_pred HHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 220 SICIEILT------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 220 ~IAraL~~------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
.+||+|+. ++++|+||||||+||...|..++++.++++++ |..|++|-||+ .....+||||++|++|++++.
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDL-NLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccc-hHHHHhhheeeeeeCCeEeec
Confidence 99999975 45699999999999999999999999999965 79999999996 588999999999999999999
Q ss_pred cChhhHH---HHHHhCCCCCCCCCCCh
Q 038004 294 GPASMTE---QLFASNGFPCPSLRNPS 317 (330)
Q Consensus 294 g~~~~~~---~~~~~~g~~~~~~~~p~ 317 (330)
|+++++. .+-.-||...-....|.
T Consensus 223 g~p~~vlt~Etl~~vyg~~~~V~~~P~ 249 (259)
T COG4559 223 GSPQDVLTDETLERVYGADIRVGRHPA 249 (259)
T ss_pred CCHHHhcCHHHHHHHhCCceeeeeccC
Confidence 9998752 23344676654444443
No 208
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-45 Score=341.19 Aligned_cols=221 Identities=27% Similarity=0.376 Sum_probs=182.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...++++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|.++.
T Consensus 23 ~~~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 23 QTALEVRNLNLFYG-------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CcEEEEEEEEEEEC-------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 45799999999993 246999999999999999999999999999999999998741 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. |+.||+.+...... ........+++.++++.+++.+..... .+..+.+|||
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 171 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSG 171 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCH
Confidence 1 13469999999988886 99999987654321 112233456688899999986421111 1224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999996 4 68999999995 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 249 g~~~ 252 (272)
T PRK14236 249 GDTD 252 (272)
T ss_pred CCHH
Confidence 9854
No 209
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.9e-46 Score=332.28 Aligned_cols=197 Identities=28% Similarity=0.464 Sum_probs=168.6
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---c---
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---L--- 141 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~--- 141 (330)
++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. .
T Consensus 1 i~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKFG-------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEEC-------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhH
Confidence 468999883 34699999999999999999999999999999999999987 4799999998732 1
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 1246999999999999999999998865432 123445567789999999998776664 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++||++ .. ..+||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 9999999999999999999999999999999999999974 489999999996 34 4689999875
No 210
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=337.21 Aligned_cols=220 Identities=23% Similarity=0.356 Sum_probs=181.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +..+.+|+|.++|+++..
T Consensus 3 ~l~~~~v~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 3 RIEVENLNTYFD-------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred EEEEEeEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 588999999983 3469999999999999999999999999999999999864 211257999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++. |+.||+.++..... .......++++.++++.++|.+...... +..+.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq 151 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHH
Confidence 13469999999988885 99999987643221 1223445677889999999854322111 23567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCC
Confidence 999999999999999999999999999999999999999985 4 78999999996 58899999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14266 229 TDQ 231 (250)
T ss_pred HHH
Confidence 543
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.7e-46 Score=373.15 Aligned_cols=220 Identities=27% Similarity=0.396 Sum_probs=185.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|. +.+|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 1 LLEMKGIVKTFG-------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNI 72 (500)
T ss_pred CEEEEeEEEEeC-------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCH
Confidence 378999999983 346999999999999999999999999999999999998752 247999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++||+|++.+++.+||.||+.++....... .....+..+++.++++.++|.+..+++ ++.+|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR----PVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccC----chhhCCHHHHH
Confidence 1246999999999999999999998764321100 122344556788999999997654322 35699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+.++|++++ +.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcc
Confidence 9999999999999999999999999999999999999997 4599999999995 5888999999999999999998765
Q ss_pred h
Q 038004 298 M 298 (330)
Q Consensus 298 ~ 298 (330)
+
T Consensus 227 ~ 227 (500)
T TIGR02633 227 T 227 (500)
T ss_pred c
Confidence 3
No 212
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-45 Score=335.61 Aligned_cols=203 Identities=25% Similarity=0.338 Sum_probs=170.7
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc---ccCcEEEEeCCCC--CCCCCC
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL---AFGTSAYVTQEDT--LMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~--l~~~lT 160 (330)
+|+||||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|+++.. ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999999861 0136999999987532 1246999999984 667789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD---AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
+.+++.+...... .......+++.++++.++|.+ ..++ .+.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 122344567899999999973 3444 3569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999765689999999996 57889999999999999999998543
No 213
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-45 Score=372.12 Aligned_cols=225 Identities=25% Similarity=0.369 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|+.+. ..+.+|+||||+|.+||++||+||||||||||+|+|+|+++|. .+++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ---TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCC---CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 4799999999995211 1257999999999999999999999999999999999999752 1247999999987521
Q ss_pred ---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCC
Q 038004 142 ---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA---MDTRIGGWN 207 (330)
Q Consensus 142 ---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~~~ 207 (330)
..+.++||+|++. +++.+|+.+++.+...... .....+..+++.++++.+||.+. .++ +
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 1146999999975 6778899999876543211 23445566789999999999753 343 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++.|.|||+||||+ ..+..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEEC
Confidence 6799999999999999999999999999999999999999999999999765689999999996 578899999999999
Q ss_pred CeEEEEcChhhH
Q 038004 288 GKTIYFGPASMT 299 (330)
Q Consensus 288 G~iv~~g~~~~~ 299 (330)
|++++.|+++++
T Consensus 233 G~i~~~g~~~~~ 244 (529)
T PRK15134 233 GRCVEQNRAATL 244 (529)
T ss_pred CEEEEeCCHHHH
Confidence 999999986543
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-45 Score=337.05 Aligned_cols=218 Identities=26% Similarity=0.297 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ ++.+|+||||+|++||++||+|+||||||||+++|+|+. +| ++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~ 74 (252)
T CHL00131 5 KPILEIKNLHASVN-------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESIL 74 (252)
T ss_pred CceEEEEeEEEEeC-------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcc
Confidence 45799999999984 246999999999999999999999999999999999983 44 5799999998753
Q ss_pred c----ccC--cEEEEeCCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 038004 141 L----AFG--TSAYVTQEDTLMTTLTVMEAVYYSAQLQLP----DSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~----~~~--~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~ 209 (330)
. ... .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.++|.+ ..++. +.
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 149 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VN 149 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cc
Confidence 2 111 378999999999999999999765432110 00112234467788999999973 44543 34
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeC
Q 038004 210 -GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAY 287 (330)
Q Consensus 210 -~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~ 287 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+ ||++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~-~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQ-RLLDYIKPDYVHVMQN 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHhhhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999974 589999999996 466666 899999999
Q ss_pred CeEEEEcChh
Q 038004 288 GKTIYFGPAS 297 (330)
Q Consensus 288 G~iv~~g~~~ 297 (330)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999876
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=371.60 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~ 72 (501)
T PRK11288 3 PYLSFDGIGKTFP-------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFAS 72 (501)
T ss_pred ceEEEeeeEEEEC-------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCC
Confidence 4799999999993 34699999999999999999999999999999999999987 47999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||.+|+.++............+..+++.++++.++|.+..++ ++.+|||||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~q 147 (501)
T PRK11288 73 TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQ 147 (501)
T ss_pred HHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHH
Confidence 135699999999999999999999875421111112334556778999999999765554 45799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||+|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|+++..++
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999999999974 589999999996 57889999999999999987765
No 216
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7.9e-46 Score=336.18 Aligned_cols=210 Identities=26% Similarity=0.379 Sum_probs=174.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. ++.+++||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 5 ~~~i~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~ 74 (225)
T PRK10247 5 SPLLQLQNVGYLAG-------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTL 74 (225)
T ss_pred CceEEEeccEEeeC-------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcC
Confidence 35799999999983 34699999999999999999999999999999999999877 47999999986532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqr 216 (330)
....++|++|++.+++. |+.||+.+...+.. . ....+++.++++.++|.+ ..++ ++.+|||||+
T Consensus 75 ~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~ 143 (225)
T PRK10247 75 KPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTK-----NIAELSGGEK 143 (225)
T ss_pred CHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHH
Confidence 12469999999988874 99999987643321 1 112356788999999963 4444 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-CCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-YGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-~G~iv~~g~ 295 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||++||++ ..+. .||++++|+ ++..+.+|.
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999999999999999766689999999996 4664 699999994 555555554
No 217
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=364.40 Aligned_cols=216 Identities=28% Similarity=0.421 Sum_probs=192.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|++++| +..++|+||||++++||++||+|+||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 6 ~~ll~~~~i~K~F-------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~ 75 (500)
T COG1129 6 PPLLELRGISKSF-------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFS 75 (500)
T ss_pred cceeeeecceEEc-------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCC
Confidence 4589999999999 4578999999999999999999999999999999999999884 7999999997532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
....|+.|+|+..|+|+|||.||+.++..... ...++....++++.++|+.+++....+++ +.+||+||
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~Lsiaq 150 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQ 150 (500)
T ss_pred CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHH
Confidence 12359999999999999999999987754332 22357788899999999999996445554 46999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||.|+|||||..++++||||||||+|+......+++++++++ ++|.+||+|||.+ .+++++||||.||++|+.+...+
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999999999999997 5699999999995 68999999999999999999888
No 218
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-45 Score=372.65 Aligned_cols=221 Identities=24% Similarity=0.365 Sum_probs=184.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC-CEe---
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN-GRK--- 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~-g~~--- 138 (330)
.++|+++||++.|+... .+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~--~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD--RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVD 351 (520)
T ss_pred CceEEEeccEEEeccCC--CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCcccc
Confidence 35799999999995210 0234699999999999999999999999999999999999987 47999996 532
Q ss_pred cc--------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccccCC
Q 038004 139 ET--------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-----AMDTRIGG 205 (330)
Q Consensus 139 ~~--------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----~~~~~~~~ 205 (330)
.. ...++++|++|++.+++.+||.||+.+...+. ......++++.++++.++|.+ ..++
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 423 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK---- 423 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC----
Confidence 11 11245999999999999999999998754321 223334567889999999975 2343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|
T Consensus 424 -~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l 501 (520)
T TIGR03269 424 -YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALM 501 (520)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEE
Confidence 46799999999999999999999999999999999999999999999999766689999999996 5888999999999
Q ss_pred eCCeEEEEcChhh
Q 038004 286 AYGKTIYFGPASM 298 (330)
Q Consensus 286 ~~G~iv~~g~~~~ 298 (330)
++|++++.|++++
T Consensus 502 ~~G~i~~~g~~~~ 514 (520)
T TIGR03269 502 RDGKIVKIGDPEE 514 (520)
T ss_pred ECCEEEEECCHHH
Confidence 9999999998654
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=337.74 Aligned_cols=219 Identities=22% Similarity=0.356 Sum_probs=182.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
.+.+.++++++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|.. +.+|+|+++|+++.
T Consensus 6 ~~~~~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CceEEEEeEEEEeC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 45789999999983 3569999999999999999999999999999999999997521 24799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.++ .+|+.||+.++..... . .....+++.++++.++|.+...... +.++.+|||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~ 152 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSG 152 (261)
T ss_pred ccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCH
Confidence 1 124599999999887 5899999988754321 1 2234567889999999865432221 235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
||+||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|+|++||++ ..+..+||++++|+
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999995 4 68999999996 57889999999996
Q ss_pred -CCeEEEEcChh
Q 038004 287 -YGKTIYFGPAS 297 (330)
Q Consensus 287 -~G~iv~~g~~~ 297 (330)
+|++++.|+.+
T Consensus 230 ~~G~i~~~g~~~ 241 (261)
T PRK14263 230 RTGYLVEMGPTA 241 (261)
T ss_pred CCceEEEeCCHH
Confidence 89999999854
No 220
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=338.88 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=180.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC------
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------ 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g------ 136 (330)
.++++++|+++.|. ++.+|+||||+|.+||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g 77 (257)
T PRK14246 8 EDVFNISRLYLYIN-------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFG 77 (257)
T ss_pred hhheeeeeEEEecC-------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECC
Confidence 46799999999983 456999999999999999999999999999999999999874 46555555
Q ss_pred Eeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 137 RKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 137 ~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+... .+..++|++|++.+++.+|+.+|+.++..... .....+..+++.++++.+++.+..... .+..+..|
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~L 154 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQL 154 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcccC
Confidence 43311 13469999999999999999999988753221 122345556788999999996421111 11246799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++ + +.|||++||++ ..+..+||++++|++|+++
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNP-QQVARVADYVAFLYNGELV 231 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 3 68999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 232 ~~g~~~ 237 (257)
T PRK14246 232 EWGSSN 237 (257)
T ss_pred EECCHH
Confidence 999854
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-45 Score=372.18 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=182.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECC-------
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILING------- 136 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g------- 136 (330)
|+++||++.|. ++.+|+|+||+|.+||+++|+||||||||||+|+|+|++ +| ++|+|.++|
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~ 70 (520)
T TIGR03269 1 IEVKNLTKKFD-------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCG 70 (520)
T ss_pred CEEEEEEEEEC-------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEecccccccc
Confidence 47899999983 346999999999999999999999999999999999997 45 479999972
Q ss_pred ----------------Eec--------c-------cccCcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH
Q 038004 137 ----------------RKE--------T-------LAFGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184 (330)
Q Consensus 137 ----------------~~~--------~-------~~~~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~ 184 (330)
.++ . ..++.++|+||+ +.+++.+||.||+.++.... .....+..+
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 147 (520)
T TIGR03269 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVG 147 (520)
T ss_pred ccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 111 0 012458999998 57888899999998865432 133455567
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE
Q 038004 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264 (330)
Q Consensus 185 ~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 264 (330)
++.++++.+||.+..++. +.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.||
T Consensus 148 ~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 148 RAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 899999999998766653 579999999999999999999999999999999999999999999999976668999
Q ss_pred EEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 265 i~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
|+||||+ ..+..+||++++|++|++++.|++++..
T Consensus 223 iivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 9999996 5788999999999999999999876543
No 222
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=370.25 Aligned_cols=214 Identities=24% Similarity=0.338 Sum_probs=181.9
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc------
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------ 141 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~------ 141 (330)
++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSFP-------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEeC-------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHH
Confidence 368898883 356999999999999999999999999999999999999874 7999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
....++|++|++.+++.+||.||+.++............+..+++.++++.+++....++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 1246999999999999999999998753211000112344456789999999998766654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ .++..+||++++|++|++++.|++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999999999974 589999999996 57889999999999999999998654
No 223
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-46 Score=320.55 Aligned_cols=238 Identities=21% Similarity=0.362 Sum_probs=207.7
Q ss_pred eeEEEEeEEEEecCCcc--cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-
Q 038004 64 VFLTWKDLSVVVPSGKK--ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~--~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~- 140 (330)
++|+++||+++|....+ ++....+++.|||++++|+.+||||.||||||||.|+|+|.++| ++|+|++||+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~ 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHF 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccc
Confidence 46899999999864322 23456799999999999999999999999999999999999988 5799999998752
Q ss_pred ----cccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 ----LAFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ----~~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|-++||||. ++|++.+.+.|.+++++. ..+.+..+.+++.+-|..+||-+.... .+|+.||-|
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan----~~~~~la~~ 153 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHAN----YYPHMLAPG 153 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccc----cchhhcCch
Confidence 23467999999984 899999999998877653 346788888999999999998544322 267899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||||+||||+.+|+++|.||..++||...+.+++++..+++++.|.+.|+++.++ ..+.+++|.|+||+.|++|+.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999999999999999999999999999999995 7999999999999999999999
Q ss_pred ChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 295 PASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 295 ~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++ .++| .+|.++.+++|
T Consensus 233 ~t---~~v~----------a~P~~~~TkRl 249 (267)
T COG4167 233 ST---ADVL----------ASPLHELTKRL 249 (267)
T ss_pred Ch---hhhh----------cCCccHHHHHH
Confidence 94 5667 48999988877
No 224
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.9e-46 Score=338.14 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=167.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|.. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYKP-----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecCC-----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHH
Confidence 478999999842 1246999999999999999999999999999999999999874 7999999986531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR-----ERAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ ++....++ ++.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCH
Confidence 1346999999998775 699999976431 01111111 1122334443 33333333 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||++||+..+..+.+.|++++ + |.|||++||++ ..+ ..||++++|++|++++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQ 217 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999986 4 89999999996 456 46999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 218 ~~~~~ 222 (237)
T cd03252 218 GSHDE 222 (237)
T ss_pred cCHHH
Confidence 98543
No 225
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.3e-45 Score=331.29 Aligned_cols=202 Identities=29% Similarity=0.392 Sum_probs=169.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
+.++|+++.| +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|+++|++...
T Consensus 23 l~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV-------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc-------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh----
Confidence 5667777666 456799999999999999999999999999999999999987 47999999986421
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
..+...+++.+||.||+.++.... .....+.++++.++++.++|.+..++. +.+||||||||++|||||
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral 157 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHH
Confidence 112234567799999998765432 123344556788899999998777664 469999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ ..+..+||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999754 89999999995 5788899999999999998765
No 226
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=334.85 Aligned_cols=221 Identities=26% Similarity=0.358 Sum_probs=179.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
...|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|.. +.+|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred CceEEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 34699999999994 2469999999999999999999999999999999999987521 25799999987542
Q ss_pred ---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 ---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
...+.++|++|++.+++. |+.||+.++..... .......++++.++++.+++.+..... .+..+.+|
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 162 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDR-LGDLAFNL 162 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHH-HhCCcccC
Confidence 113469999999998886 99999987653221 111223346678888888875321111 12245799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++ . +.|||++||++ ..+..+||++++|++|+++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNM-QQAARVSDYTAYMYMGELI 239 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999986 3 68999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 240 ~~g~~~ 245 (265)
T PRK14252 240 EFGATD 245 (265)
T ss_pred EeCCHH
Confidence 999854
No 227
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=339.66 Aligned_cols=217 Identities=25% Similarity=0.373 Sum_probs=177.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.|+++||++.|+. ++.+|+|+||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++...
T Consensus 6 ~l~~~~l~~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWRN------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEecC------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhc
Confidence 5899999999941 24699999999999999999999999999999999999987 479999999875321
Q ss_pred cCcEEEEeCCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQEDTLM--TTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
...++|++|++.+. ...++.+++.++...... .........+++.++++.+||.+..++. +.+||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 23599999998652 234788888653210000 0011223445678899999998776654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999974 489999999996 5788999999877 899999998764
No 228
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.5e-45 Score=336.55 Aligned_cols=212 Identities=29% Similarity=0.410 Sum_probs=167.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPSR----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCCC----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHH
Confidence 4789999998521 1246999999999999999999999999999999999999874 7999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE-----RAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .||.||+.+.... ........ .+.++++.+ ++....+ ..+.+|||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~ 142 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSG 142 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCH
Confidence 1246999999998876 5999999765321 11111111 112222222 2322222 24679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ .|.|||++||++ ..+. .||++++|++|++++.
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 489999999996 4665 8999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+.++.
T Consensus 219 ~~~~~~ 224 (238)
T cd03249 219 GTHDEL 224 (238)
T ss_pred CCHHHH
Confidence 985443
No 229
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.7e-45 Score=332.10 Aligned_cols=207 Identities=29% Similarity=0.467 Sum_probs=170.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|.. ..+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 3 l~~~~l~~~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 3 IEFRNVSFSYPN-----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPA 74 (220)
T ss_pred EEEEEEEEEcCC-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHH
Confidence 789999999842 1246999999999999999999999999999999999999874 6999999986521
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG------GWNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~------~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.||+.+.... .. .+.+.++++.+++.+..++... ...+.+||||
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 1246999999998887 6999999764211 11 2345678888888766554320 1134699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ ..+ .+||++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999864 38999999996 455 799999999999998754
No 230
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-45 Score=370.95 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=183.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+|.||++ .+.++|+|+||+|+|||++|||||||+||||++++|..++.| ++|+|.+||.++..
T Consensus 465 ~IeF~~VsFaYP~R----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P---tsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP---TSGRILLDGVPISDINH 537 (716)
T ss_pred eEEEEEeeeecCCC----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCeehhhcCH
Confidence 69999999999864 467899999999999999999999999999999999999988 47999999998742
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHH-cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--IRE-MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~--l~~-~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++||+|-|+|.||.. ||+|||.|+.. ..+.++.+..++.+ -+. .++++.+++.+|++ ..+||||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk-G~qLSGGQK 610 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK-GSQLSGGQK 610 (716)
T ss_pred HHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCc-cccccchHH
Confidence 24679999999999987 99999999864 12333333222221 111 36788899999874 458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+||||||+++|.||||||.||+||.++...+.+.|.++.+ ++|||+|.|.+ +- .+.+|+|+|+++|++++.|..
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL-ST-V~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL-ST-VRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh-hH-hhhccEEEEEcCCeEEecccH
Confidence 999999999999999999999999999999999999999864 69999999996 34 467999999999999999985
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 687 ~e 688 (716)
T KOG0058|consen 687 DE 688 (716)
T ss_pred HH
Confidence 43
No 231
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-45 Score=334.97 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=169.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 i~~~~l~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYPGD-----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeCCC-----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHH
Confidence 4789999999421 13689999999999999999999999999999999999987 47999999986531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE-----RAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .|++||+.+.... .......+ .+.++++.+ ++....+. ++.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCH
Confidence 1346999999998886 6999999765321 11111111 234445555 45444433 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||++ ..+.. ||++++|++|++++.
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeee
Confidence 99999999999999999999999999999999999999999985 4 79999999996 46655 999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 218 ~~~~~ 222 (234)
T cd03251 218 GTHEE 222 (234)
T ss_pred CCHHH
Confidence 98543
No 232
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.7e-45 Score=327.28 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=174.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|. ++.+++++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~ 78 (214)
T PRK13543 9 PPLLAAHALAFSRN-------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRG 78 (214)
T ss_pred cceEEEeeEEEecC-------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccch
Confidence 35799999999983 346999999999999999999999999999999999999874 6999999987542
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+...... . ...+.+.++++.++|.+..++. +.+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (214)
T PRK13543 79 DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLA 147 (214)
T ss_pred hhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHH
Confidence 22459999999999999999999987654321 1 1234577899999998776654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||+.+|++|||||||++||+..+..+.+.|+++++ .|.|+|++|||+ .++.++||++++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999874 589999999995 689999999999874
No 233
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=7.6e-45 Score=328.97 Aligned_cols=209 Identities=25% Similarity=0.367 Sum_probs=170.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC--CE--ecc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN--GR--KET 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~--g~--~~~ 140 (330)
+|+++||++.|+........+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++ |. +..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchh
Confidence 3789999999952110001246999999999999999999999999999999999999874 6999998 42 321
Q ss_pred c---------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 038004 141 L---------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIGGWNVRG 210 (330)
Q Consensus 141 ~---------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~~~~~~ 210 (330)
. ....++|++|++.+++.+|+.|++.+..... ........+++.++++.++|.+.. +. ++.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 0 1245999999999999999999998754322 123344556788999999997643 33 3579
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||||||||++|||||+.+|++|||||||++||+..+..+.+.|+++++ .|.|||++||++ ..+..+||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999999999999999999999999964 589999999994 57888999998763
No 234
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.5e-45 Score=322.81 Aligned_cols=189 Identities=51% Similarity=0.839 Sum_probs=162.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~ 141 (330)
+.++++||++.|+...+ ...+.+|+|+||+|++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~-~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTVKSSPS-KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEEecCCC-cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCch
Confidence 35899999999952100 01256999999999999999999999999999999999998 76 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+|+.||+.+...+ .+|||||+||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv 120 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRV 120 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHH
Confidence 235699999999999999999999754210 05999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
+|||||+.+|++|||||||++||+.++..++++|+++++ .|.|+|++||++...+..+||++++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999874 48999999999644678899999999999998754
No 235
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=340.28 Aligned_cols=224 Identities=24% Similarity=0.357 Sum_probs=180.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+++||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|.++.
T Consensus 43 ~~~l~i~nl~~~~~-------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 43 DAKLSVEDLDVYYG-------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CceEEEEEEEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34799999999984 346999999999999999999999999999999999998631 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccc
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP---------DSMS-RSEKRERAEMTIREMGLQDAMDTRI 203 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~~~L~~~~~~~~ 203 (330)
. .++.++|++|++.+++. ||+||+.++...... .... .....+++.++++.++|.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 1 12469999999988874 999999886532100 0011 2233567888999999854332211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE-
Q 038004 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL- 282 (330)
Q Consensus 204 ~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v- 282 (330)
+.++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|+++++ +.|||++||++ ..+..+||++
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~ 270 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTA 270 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEE
Confidence 235679999999999999999999999999999999999999999999999974 48999999996 5788999997
Q ss_pred EEEeCCeEEEEcChhh
Q 038004 283 CLLAYGKTIYFGPASM 298 (330)
Q Consensus 283 ~vl~~G~iv~~g~~~~ 298 (330)
++|++|++++.|++++
T Consensus 271 ~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 271 VFLTGGELVEYDDTDK 286 (305)
T ss_pred EEecCCEEEEeCCHHH
Confidence 5789999999998543
No 236
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.3e-44 Score=330.46 Aligned_cols=219 Identities=26% Similarity=0.315 Sum_probs=175.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~- 141 (330)
+++++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+. +| ++|+|.++|++...
T Consensus 1 ~i~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~ 70 (248)
T PRK09580 1 MLSIKDLHVSVE-------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLEL 70 (248)
T ss_pred CeEEEEEEEEeC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccC
Confidence 378999999984 246999999999999999999999999999999999995 34 47999999976521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHh-hcCCC---CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ-LQLPD---SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~-~~~~~---~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~L 211 (330)
....++|++|++.+++.+|+.+++.+... +.... .........+++++++.+++.+ ..++.+ ..+|
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~L 146 (248)
T PRK09580 71 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGF 146 (248)
T ss_pred CHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCC
Confidence 11359999999988888887776644321 11000 0112233566788999999964 333321 1379
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~i 290 (330)
||||||||+|||||+.+|++|||||||++||+.++..+.++|++++ +.|.|||++|||+ ..+... ||++++|++|++
T Consensus 147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999987 4589999999996 467666 899999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+.+.+
T Consensus 225 ~~~g~~~~~ 233 (248)
T PRK09580 225 VKSGDFTLV 233 (248)
T ss_pred EEeCCHHHH
Confidence 999987644
No 237
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-45 Score=332.01 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=168.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYDE------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecCC------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCH
Confidence 3789999999841 235999999999999999999999999999999999999874 6999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSG 213 (330)
....++|++|++.+++. |+.||+.+.... .. ...+.++++.+++.+..+.. ..+..+.+|||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 142 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQ 142 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCH
Confidence 13469999999988875 999999764311 11 12334444544443322211 01124579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ + |.|||++||++ ..+. .||++++|++|++++.
T Consensus 143 G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRL-STIK-NADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHh-hCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999985 4 89999999996 4564 5999999999999998
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 219 ~~~~ 222 (229)
T cd03254 219 GTHD 222 (229)
T ss_pred CCHH
Confidence 8843
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=321.26 Aligned_cols=189 Identities=49% Similarity=0.806 Sum_probs=161.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LA 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~ 142 (330)
..|+++|+++.|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+..+ .+.+|+|.++|++.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~---~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG---GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC---CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHh
Confidence 3689999999995311 125699999999999999999999999999999999998641 125799999998753 22
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|++||+.++... + +|||||+||++||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la 120 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIG 120 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHH
Confidence 35699999999999999999999764210 0 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~g 294 (330)
|||+.+|++|||||||++||+.++..+++.|+++++ .|.|+|++||++...+..+||++++|++ |++++.|
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999874 5899999999964246789999999999 9999865
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=333.94 Aligned_cols=203 Identities=28% Similarity=0.421 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|. ++.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~~------ 66 (251)
T PRK09544 3 SLVSLENVSVSFG-------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGK------ 66 (251)
T ss_pred cEEEEeceEEEEC-------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCc------
Confidence 3689999999994 34699999999999999999999999999999999999987 4799999873
Q ss_pred CcEEEEeCCCCCCCCC--CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTL--TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..++|++|++.+++.+ |+.+++.+.. .. ..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----KKEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc------cc----cHHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 3599999998877653 6777664311 11 124577899999998776654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++ ++++.|++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999999755589999999996 578899999999964 79999987543
No 240
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.9e-45 Score=324.15 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=169.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACERD-------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEEC-------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchH
Confidence 378999999983 346999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+....+. . ...++++++++.+||.+..++. +.+||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 13469999999999999999999987654321 1 2345688999999998766553 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++||++ ..+..+.+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999999874 589999999996 5777766788776
No 241
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=324.87 Aligned_cols=218 Identities=28% Similarity=0.387 Sum_probs=195.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+++++||+++| +.+.+|+++|++|++|.+++|+|||||||||||.+++.|++.+ +|+|+++|.++...
T Consensus 1 MI~i~nv~K~y-------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY-------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh-------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCCh
Confidence 46899999998 4678999999999999999999999999999999999999874 79999999986432
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++++.+-|+..+..++||+|-+.|+.. ....+....+.+..++++++.++|++..++. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 2457889999999999999999999853 2333445677888999999999999888774 469999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.||+.|+++.+.++||||.++||.....++++.|++++++.|+||+++-||+ .++..++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999999999999999997 589999999999999999999998875
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=366.74 Aligned_cols=224 Identities=21% Similarity=0.356 Sum_probs=184.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+.+ +++.+|+||||+|++||++||+|+||||||||+|+|+|+++|. .+|+|.++|+++..
T Consensus 257 ~~~l~~~~l~~~~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 257 EVILEVRNLTAWDPVN----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGKPVKIR 330 (506)
T ss_pred CceEEEecCccccccc----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCEECCCC
Confidence 3479999999988421 1346899999999999999999999999999999999998741 36999999987531
Q ss_pred -----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 -----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPD--SMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 -----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
....++|++|++ .+++.+||.||+.++....... .....+.++++.++++.++|. +..++. +.+
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 405 (506)
T PRK13549 331 NPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IAR 405 (506)
T ss_pred CHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----ccc
Confidence 124599999996 4788899999998753211100 012334556789999999996 455553 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||+ ..+.++||++++|++|++
T Consensus 406 LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 599999999996 588999999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
+..|+++++
T Consensus 484 ~~~~~~~~~ 492 (506)
T PRK13549 484 KGDLINHNL 492 (506)
T ss_pred EEEeccccC
Confidence 999886543
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.8e-45 Score=334.07 Aligned_cols=198 Identities=29% Similarity=0.419 Sum_probs=170.1
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv 161 (330)
+|+||||+|++||+++|+|+||||||||+++|+|++++ +|+|.++|+++.. ..+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999853 6999999987532 12358999999988888999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEE
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT-------RPKLLFL 234 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~-------~P~llll 234 (330)
.+|+.+.... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 122334456788999999998766553 56999999999999999997 7799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999974 589999999995 578899999999999999999986543
No 244
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=309.61 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=189.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.++++|+++.| +..++|-||+|+.+.||.+.++||||+|||||+|.|.=+.-| .+|+..+.|....
T Consensus 2 sirv~~in~~y-------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY-------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc-------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 47899999998 456799999999999999999999999999999999888766 4799999886431
Q ss_pred -------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 -------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
..++.+|+|||...|+|++||.|||..+.. +. .++++.+...++.++|+.+.|.+++|+ +|-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 113469999999999999999999976542 22 246788899999999999999988886 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||+|||+|||||+.+|++|++||||++|||....++.+++++++ +.|.|-+++||.. ....+.+.+|+.|.+|+||+.
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev-~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeeh-hHHHhhhhheEeeecCeeEee
Confidence 99999999999999999999999999999999999999999998 5699999999996 588899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 223 g~a~ 226 (242)
T COG4161 223 GDAS 226 (242)
T ss_pred cchh
Confidence 9853
No 245
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.9e-45 Score=372.31 Aligned_cols=209 Identities=27% Similarity=0.386 Sum_probs=174.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. .++++|+|+||+|++||.+||+|+||||||||+++|+|++ |. +|+|.+||.++..
T Consensus 349 ~i~~~~vsf~~~------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCH
Confidence 599999998763 2356999999999999999999999999999999999999 63 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++|||.++.. ..+. +++.++++..++ ++.+++.+++. ...||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LS 487 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLS 487 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCC
Confidence 24579999999999987 99999987531 1222 344555555544 44557777653 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...|.+.|.++. .++|+|+|||++ . ....||+|++|++|++++
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl-~-~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL-E-DLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh-H-HHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999999999999885 379999999996 3 456799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 564 ~G~~~e 569 (588)
T PRK11174 564 QGDYAE 569 (588)
T ss_pred cCCHHH
Confidence 999654
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-44 Score=314.96 Aligned_cols=169 Identities=33% Similarity=0.537 Sum_probs=152.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ ...+|+++||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYG-------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHh
Confidence 46899999984 236999999999999999999999999999999999999874 7999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.||+. |||||+||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 2356999999999999899999873 89999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+.+|++|||||||++||+.++..++++|++++++ |.|+|++||++ ..+..+||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999755 89999999995 578889999999999864
No 247
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.5e-45 Score=374.74 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=178.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|.. ....+|+|+|++|++||.+||+|+||||||||+|+|+|++.|. +|+|++||.++..
T Consensus 471 ~I~~~nvsf~y~~-----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 471 EIEFENVSFRYGP-----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDL 542 (709)
T ss_pred eEEEEEEEEEeCC-----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCH
Confidence 5999999999952 2246999999999999999999999999999999999999884 7999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-------GLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++||+.++... .+. +.+.+++... .++..+++.+++ ....||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~-----~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LS 611 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSG-SIRENIALGNPE-----ATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLS 611 (709)
T ss_pred HHHHhheeEEcccchhhcC-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhccccccccccc-CCCCCC
Confidence 34689999999999987 999999875421 121 2233333332 355667777765 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+.+.|.+.|.++. .|+|+|+|+|++ ...+.||||+||++|++++
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVE 687 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceec
Confidence 999999999999999999999999999999999999999999986 379999999996 3668899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|+.++.
T Consensus 688 ~gs~~el 694 (709)
T COG2274 688 QGSHEEL 694 (709)
T ss_pred cCCHHHH
Confidence 9996544
No 248
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-45 Score=330.72 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=166.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYDP------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeCC------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHH
Confidence 478999999841 24589999999999999999999999999999999999987 47999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .|+.||+.++... ..... +.+.++.+++.+.. ++.+ +..+.+|||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~ 140 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSG 140 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCH
Confidence 1245999999998886 6999999775321 11111 22333333332211 1111 123579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|.+++ + |.|||++||++ ..+. .||++++|++|++++.
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999986 4 89999999996 4665 5999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 217 ~~~~~ 221 (236)
T cd03253 217 GTHEE 221 (236)
T ss_pred CCHHH
Confidence 88543
No 249
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-43 Score=329.40 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=181.5
Q ss_pred eeEEEEeEEEEecCCcc-------------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 64 VFLTWKDLSVVVPSGKK-------------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-------------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
+.++++||+++|..... ....+.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 45899999999854210 113457999999999999999999999999999999999999874 69
Q ss_pred EEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 131 EILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 131 ~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
+|.++|. +++++|++.+++.+|+.+|+.+..... .....+..+.+..+++.++|.+..++. +.+
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 9999985 456778877888899999998754332 123445556677889999998766654 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+||++|||||+.+|++|||||||+|||+..+..+++.|.+++ +.|.|||++||++ ..+..+||++++|++|++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHHHcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999996 4689999999995 578899999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+.++.
T Consensus 222 ~~~g~~~~~ 230 (264)
T PRK13546 222 KDYGELDDV 230 (264)
T ss_pred EEeCCHHHH
Confidence 999997654
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-44 Score=315.37 Aligned_cols=171 Identities=36% Similarity=0.522 Sum_probs=152.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. .+.+++|+||+|++||+++|+||||||||||+++|+|++++ ++|+|.++|++...
T Consensus 1 i~~~~l~~~~~-------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRYG-------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEEC-------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchh
Confidence 46899999984 24699999999999999999999999999999999999987 47999999986532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 125699999999998889999987431 89999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|+|++||++ ..+..+||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999765489999999995 57888999999999884
No 251
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=363.75 Aligned_cols=215 Identities=20% Similarity=0.376 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.| + .+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 263 ~~~l~~~~l~~~~-------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~ 330 (510)
T PRK09700 263 ETVFEVRNVTSRD-------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPR 330 (510)
T ss_pred CcEEEEeCccccC-------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCC
Confidence 3579999999764 1 3899999999999999999999999999999999999874 6999999987532
Q ss_pred -----ccCcEEEEeCC---CCCCCCCCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccCCC
Q 038004 142 -----AFGTSAYVTQE---DTLMTTLTVMEAVYYSAQLQ---LPD--S-MSRSEKRERAEMTIREMGLQ-DAMDTRIGGW 206 (330)
Q Consensus 142 -----~~~~i~~v~Q~---~~l~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~ 206 (330)
..+.++||+|+ ..+++.+||.||+.++...+ ... . .......+++.++++.++|. +..++
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 405 (510)
T PRK09700 331 SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ----- 405 (510)
T ss_pred CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-----
Confidence 12469999998 45889999999998753211 000 0 12233345688999999996 55555
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|+
T Consensus 406 ~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d~i~~l~ 483 (510)
T PRK09700 406 NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCDRIAVFC 483 (510)
T ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999999974 599999999996 58899999999999
Q ss_pred CCeEEEEcCh
Q 038004 287 YGKTIYFGPA 296 (330)
Q Consensus 287 ~G~iv~~g~~ 296 (330)
+|++++.++.
T Consensus 484 ~G~i~~~~~~ 493 (510)
T PRK09700 484 EGRLTQILTN 493 (510)
T ss_pred CCEEEEEecC
Confidence 9999988764
No 252
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.4e-44 Score=321.06 Aligned_cols=194 Identities=29% Similarity=0.373 Sum_probs=167.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|. ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCERD-------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEeC-------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHH
Confidence 47899999983 346899999999999999999999999999999999999874 6999999987531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|++||+.+.... . ..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 234699999999999999999999774311 1 235678899999998766553 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|++||++. .+...|++++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999864 5899999999964 677899999887
No 253
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.6e-44 Score=334.72 Aligned_cols=210 Identities=24% Similarity=0.314 Sum_probs=173.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+.+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~-----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTEG-----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCCC-----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 7899999999532 2458999999999999999999999999999999999986 2 5999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG------WNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~------~~~~~LSGG 214 (330)
.++.++|++|++.+|+. |+++|+.... ... .+++.++++.+||.+..+..... .....||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 13569999999999985 9999995321 111 23567788899997665553210 012349999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||++ ..+. .||||++|++|++++.|
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g 218 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYD 218 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecC
Confidence 9999999999999999999999999999999999999999874 389999999996 4565 59999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 219 ~~~~l 223 (275)
T cd03289 219 SIQKL 223 (275)
T ss_pred CHHHH
Confidence 98654
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-44 Score=323.92 Aligned_cols=207 Identities=22% Similarity=0.339 Sum_probs=169.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 l~~~~l~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 3 IEFKNVSLRYRPN-----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLH 74 (221)
T ss_pred EEEEEEEEecCCC-----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHH
Confidence 7899999999521 24699999999999999999999999999999999999887 47999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.||+.+... .. .+++.++++.+++.+..++. ..+.++.+||||
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 2356999999998776 599999854211 11 23456667777775543310 011256799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||++ ..+. .||++++|++|++++.|
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999999999999985 3 68999999996 4565 49999999999999887
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 220 ~ 220 (221)
T cd03244 220 S 220 (221)
T ss_pred C
Confidence 5
No 255
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3e-44 Score=347.48 Aligned_cols=215 Identities=26% Similarity=0.366 Sum_probs=191.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++++++.|+ +..++++|||+|++||++||+|+||||||||+++|.|++.|+ +|+|+++|++...
T Consensus 3 ~~l~~~~itK~f~-------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~s 72 (501)
T COG3845 3 PALEMRGITKRFP-------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKS 72 (501)
T ss_pred ceEEEeccEEEcC-------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCC
Confidence 4689999999994 578999999999999999999999999999999999999984 7999999997532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.+..||+|+|++.|+|++||.||+..+..............+++++++.+++||+-..+.++ .+||-||||
T Consensus 73 P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQ 147 (501)
T COG3845 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQ 147 (501)
T ss_pred HHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhH
Confidence 12459999999999999999999988764322223567788899999999999987777654 599999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||.|-+||.++|++|||||||+-|-|....++++.|+++++ .|+|||+|||.+ .++.++|||+.||..|+++..-+
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999984 599999999995 68999999999999999986655
No 256
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.2e-44 Score=373.59 Aligned_cols=208 Identities=27% Similarity=0.403 Sum_probs=175.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. ..+.+|+|+||+|++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.++..
T Consensus 451 ~I~~~nvsf~Y~~-----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCC-----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCH
Confidence 5999999999952 1356999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++.. .+ .+++.++++..++.+ .+++.+++ ....||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LS 590 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLS 590 (686)
T ss_pred HHHHhccEEEccCCccCcc-cHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCC
Confidence 24679999999999987 99999987521 11 244666777776654 34555554 246899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|+++ ++|+|+|||++ .. ...||+|++|++|++++
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~-~~-i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL-ST-IRNADRIYVLDAGRVVQ 664 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh-HH-HHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998775 47999999996 34 46699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 665 ~G~~~~ 670 (686)
T TIGR03797 665 QGTYDE 670 (686)
T ss_pred ECCHHH
Confidence 999654
No 257
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=369.20 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=178.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPG-----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCC-----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCH
Confidence 5999999999953 1356999999999999999999999999999999999999884 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ...+ .+++.++++.+++ ++.+++.+++. ..+||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LS 482 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFND-TIANNIAYART----EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLS 482 (582)
T ss_pred HHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCC
Confidence 23679999999999986 99999976521 1112 2345666666654 44467777653 46899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||++ ...+.||+|++|++|++++
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVE 558 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999885 379999999996 3557799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 559 ~g~~~~l 565 (582)
T PRK11176 559 RGTHAEL 565 (582)
T ss_pred eCCHHHH
Confidence 9996543
No 258
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-44 Score=320.40 Aligned_cols=197 Identities=26% Similarity=0.342 Sum_probs=166.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+++++||++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.++ .+|+|+++|.+... .
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVRG-------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEEC-------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 689999999983 34699999999999999999999999999999999999887 47999999986431 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
...++|++|++.+++.+|+.||+.+...... . ..+++.++++.+||.+..++ ++++||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHH
Confidence 3468999998888888999999987543321 1 12357889999999765544 3569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ ..+.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999999874 489999999996 45554 88877743
No 259
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-44 Score=327.91 Aligned_cols=211 Identities=26% Similarity=0.434 Sum_probs=168.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
..+++++|+++.|+.+ .+..+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~ 81 (226)
T cd03248 9 KGIVKFQNVTFAYPTR----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQY 81 (226)
T ss_pred CceEEEEEEEEEeCCC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHc
Confidence 4579999999999531 124699999999999999999999999999999999999987 47999999976421
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM--GLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ .|+.||+.++.................+.++++.+ |+....++ ++.+|||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~ 155 (226)
T cd03248 82 EHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQ 155 (226)
T ss_pred CHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHH
Confidence 1246999999998876 59999997653211000000011112356778888 77665554 357999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+|||||+.+|++|||||||++||+..+..+.++|++++ + +.|+|++||++ ..+. .||++++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999986 3 58999999996 4665 5999999999874
No 260
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-44 Score=352.20 Aligned_cols=213 Identities=29% Similarity=0.433 Sum_probs=180.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
...++++||++.|+++ +++++|+||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.+...
T Consensus 318 ~~ei~~~~l~~~y~~g------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYPDG------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecCCC------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCcccccc
Confidence 3456677999999743 3799999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA------MDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~~~~~~~~~~~L 211 (330)
.+++++||+|+|.+|+. |++||+.++.. .. .++.+.+++++.+|.+. +|+.+++ ....|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCC
Confidence 34789999999999998 99999987532 11 23456777777777544 4555554 45679
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+|||++||||+.+++++|+||||++||.++.+.|++.|.++++ ++|+|++||++ ....-+|+|++|++|+++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGRLV 533 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCcee
Confidence 99999999999999999999999999999999999999999999974 59999999996 355679999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|..++.
T Consensus 534 ~~g~~~~L 541 (559)
T COG4988 534 EQGTHEEL 541 (559)
T ss_pred ccCCHHHH
Confidence 99997654
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.5e-44 Score=395.24 Aligned_cols=223 Identities=27% Similarity=0.420 Sum_probs=195.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
..+|+++||++.|.. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~-----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257 1935 TDILRLNELTKVYSG-----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTN 2006 (2272)
T ss_pred CceEEEEEEEEEECC-----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcch
Confidence 347999999999941 1257999999999999999999999999999999999999874 7999999987631
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.+||++|++.+++.+||+|++.+.+.++ +.+.++.+++++++++.++|.+..+++ +++||||||||
T Consensus 2007 ~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqR 2078 (2272)
T TIGR01257 2007 ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRK 2078 (2272)
T ss_pred HHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHH
Confidence 2356999999999999999999998876553 234455567788999999998877765 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+||+||+.+|++|||||||+|||+..++.++++|++++++ |+|||++||++ +++..+|||+++|.+|++++.|++++
T Consensus 2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999754 89999999996 58999999999999999999999877
Q ss_pred HHHHH
Q 038004 299 TEQLF 303 (330)
Q Consensus 299 ~~~~~ 303 (330)
....+
T Consensus 2157 Lk~~~ 2161 (2272)
T TIGR01257 2157 LKSKF 2161 (2272)
T ss_pred HHHHh
Confidence 65554
No 262
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.4e-44 Score=359.34 Aligned_cols=221 Identities=22% Similarity=0.347 Sum_probs=182.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|..+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. .+|+|.++|++...
T Consensus 255 ~~~l~~~~l~~~~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 255 DVILEARNLTCWDVIN----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIR 328 (500)
T ss_pred CceEEEeCCccccccc----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCC
Confidence 3479999999987311 1246899999999999999999999999999999999999751 36999999987531
Q ss_pred -----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 038004 142 -----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP--DSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRG 210 (330)
Q Consensus 142 -----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~ 210 (330)
..++++|++|++ .+++.+||.+|+.++...... ........++++.++++.++|.. ..++ ++.+
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 403 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-----PIGR 403 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-----cccc
Confidence 134699999996 588999999999875321110 01223344567889999999964 3454 3579
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ .++..+||++++|++|++
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 489999999996 588999999999999999
Q ss_pred EEEcCh
Q 038004 291 IYFGPA 296 (330)
Q Consensus 291 v~~g~~ 296 (330)
++.++.
T Consensus 482 ~~~~~~ 487 (500)
T TIGR02633 482 KGDFVN 487 (500)
T ss_pred EEEEcc
Confidence 987764
No 263
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4e-44 Score=359.47 Aligned_cols=207 Identities=24% Similarity=0.310 Sum_probs=175.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRLS-------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL---LSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEcC-------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCceEEECCcccccCCH
Confidence 589999999993 24599999999999999999999999999999999999987 46999999875421
Q ss_pred --ccCcEEEEeCCCCC--C-C-----CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTL--M-T-----TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l--~-~-----~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+ + + .+|+.+++.+. ....+++.++++.++|.+..++. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 12358999998642 1 1 46788776431 12346788999999998766654 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|+++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 489999999996 5788999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 215 ~~~~~~~~ 222 (490)
T PRK10938 215 ETGEREEI 222 (490)
T ss_pred EeCCHHHH
Confidence 99987643
No 264
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.9e-44 Score=365.27 Aligned_cols=210 Identities=23% Similarity=0.338 Sum_probs=178.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+. ++.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 340 ~i~~~~v~f~y~~------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 340 RIDIDNVSFAYRD------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSH 410 (592)
T ss_pred eEEEEEEEEEeCC------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCH
Confidence 5899999999952 246999999999999999999999999999999999999884 6999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |+++||.++.. .+ .+++.++++.+|+.+ .+++.++. ....||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LS 478 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLS 478 (592)
T ss_pred HHHHhheEEEccCCccccc-hHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCC
Confidence 24679999999999997 99999987531 11 244677777777543 44565554 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...|.+.|+++.+ ++|+|++||++. ....||+|++|++|++++
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998853 699999999963 456799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 555 ~G~~~~L 561 (592)
T PRK10790 555 QGTHQQL 561 (592)
T ss_pred EcCHHHH
Confidence 9997653
No 265
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-43 Score=316.15 Aligned_cols=181 Identities=31% Similarity=0.365 Sum_probs=156.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~-- 141 (330)
|+++||++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+. +| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 1 LEIKDLHVSVG-------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLP 70 (200)
T ss_pred CeEEEEEEEeC-------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCC
Confidence 47899999984 246999999999999999999999999999999999995 44 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++.+++.+++.+++ +. .+.+|||||+|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~l-----------------------------------~~----~~~~LS~G~~q 111 (200)
T cd03217 71 PEERARLGIFLAFQYPPEIPGVKNADFL-----------------------------------RY----VNEGFSGGEKK 111 (200)
T ss_pred HHHHhhCcEEEeecChhhccCccHHHHH-----------------------------------hh----ccccCCHHHHH
Confidence 123499999999988888887765 00 12379999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH-hccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE-LFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~-~~d~v~vl~~G~iv~~g~~ 296 (330)
|++|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||++||++ ..+.. +||++++|++|++++.|+.
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999999999999999999999974 589999999996 46766 7999999999999999964
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 190 ~ 190 (200)
T cd03217 190 E 190 (200)
T ss_pred H
Confidence 4
No 266
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.7e-44 Score=316.85 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=163.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSRG-------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHH
Confidence 47899999983 35699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.||+.+...... .+ .+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~------~~-~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG------GA-QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC------Cc-HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 12468999999988888999999987653321 11 34678899999998776654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|+|++||++. .-.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccc---cccceEEee
Confidence 9999999999999999999999999999999999864 5899999999963 345777764
No 267
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-44 Score=378.23 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=181.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
-.++++||+++||.+ .+..||+|+||.|++|+.+||||+|||||||++++|.+++.|+ +|+|++||.++.
T Consensus 349 g~ief~nV~FsYPsR----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLN 421 (1228)
T ss_pred cceEEEEEEecCCCC----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcc
Confidence 369999999999853 3578999999999999999999999999999999999999884 799999998763
Q ss_pred --cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccCCCCCCCC
Q 038004 141 --LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE-------MGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 --~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~~~~~~~~~L 211 (330)
..+.+||.|+|+|.||. .|++||+.|+.. ..+.++ +.++.+. ..|++.+++.++++.+ +|
T Consensus 422 ~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~-----dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qL 490 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFA-TTIRENIRYGKP-----DATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGV-QL 490 (1228)
T ss_pred hHHHHhhcCeeeechhhhc-ccHHHHHhcCCC-----cccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCC-CC
Confidence 22467999999998876 499999988642 112222 3333322 3467778888887665 69
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||+||||||+++|+|||||||||+||+.+...+.+.|.+.. .|+|.|+|+|++ +.++. +|+|++|++|+||
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRL-StIrn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999875 388999999996 56766 9999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|.+++.
T Consensus 567 E~G~h~EL 574 (1228)
T KOG0055|consen 567 EQGTHDEL 574 (1228)
T ss_pred EecCHHHH
Confidence 99998764
No 268
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-43 Score=311.47 Aligned_cols=171 Identities=29% Similarity=0.446 Sum_probs=152.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++|+++.| +|+++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 68 (182)
T cd03215 3 PVLEVRGLSVKG-----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRS 68 (182)
T ss_pred cEEEEeccEEEe-----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccC
Confidence 368999999875 799999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++ .+++.+|+.||+.+... ||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G 108 (182)
T cd03215 69 PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGG 108 (182)
T ss_pred HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHH
Confidence 134699999985 57888999999865310 8999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++||++ ..+..+||++++|++|++
T Consensus 109 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 109 NQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999974 489999999995 588999999999999974
No 269
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.7e-44 Score=373.58 Aligned_cols=210 Identities=23% Similarity=0.374 Sum_probs=174.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.. .+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 477 ~I~~~~vsf~y~~~-----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 477 YVELRNITFGYSPL-----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred eEEEEEEEEecCCC-----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 59999999999631 356999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++.. ..+ .+++.++++..++.+ .+++.+++ ....||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LS 617 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIP----DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLS 617 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCC
Confidence 24679999999999976 99999976421 122 234556666666543 45566654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...|++.|++ .++|+|+|||++ .. ...||+|++|++|++++
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl-~~-i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL-ST-IRDCDEIIVLERGKVVQ 691 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH-HH-HHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999875 379999999996 34 45699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 692 ~G~~~~L 698 (710)
T TIGR03796 692 RGTHEEL 698 (710)
T ss_pred ecCHHHH
Confidence 9996543
No 270
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-43 Score=347.00 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=178.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.|..+ ..+.+|+||||+|++|+++||+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~--- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA--- 88 (549)
T ss_pred cceeEEEEEEEecCCC----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee---
Confidence 3478999999888422 1246999999999999999999999999999999999999874 79999999752
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.+.+.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++||
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFA 155 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHH
Confidence 2233455677889999998754322 133455556788899999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||+.+|++|||||||+|||+..+..+++.|++++ +.|.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999986 4589999999996 578899999999999999999987654
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.3e-43 Score=310.36 Aligned_cols=174 Identities=28% Similarity=0.458 Sum_probs=152.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+| .+|+|.++|++...
T Consensus 1 i~~~~~~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPEQ-----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCCC-----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHH
Confidence 4789999998421 13599999999999999999999999999999999999987 47999999986531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++ .|++||+ +.+||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 1346999999998876 6998876 14899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||++||+.++..+++.|+++. + +.|||++||++ ..+. .||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHL-TGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCH-HHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 4 79999999996 4564 79999999999998764
No 272
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-43 Score=315.41 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=163.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 1 MLDVIELDFDYH-------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLC 70 (200)
T ss_pred CEEEEEEEEEeC-------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHH
Confidence 378999999983 34699999999999999999999999999999999999987 47999999986532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++++|++|++.+++.+||.+|+.+..... .. ...+.++++.+++.+..++. +.+|||||+||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~ 137 (200)
T PRK13540 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVA 137 (200)
T ss_pred HHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHH
Confidence 1356999999999989999999998764211 11 24678899999997665543 4689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++. . ...||...
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~-~~~~d~~~ 197 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL-P-LNKADYEE 197 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch-h-ccccchhh
Confidence 99999999999999999999999999999999999864 5899999999953 3 35577544
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.1e-43 Score=390.22 Aligned_cols=221 Identities=25% Similarity=0.394 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|.. +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~~-----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEecC-----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchH
Confidence 47999999999942 2357999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.+||++|++.+++.+||+|++.+...++ +....+.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 2356999999999999999999999876553 233455567899999999998877764 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|++++ + |+|||++||++ .++..+||||++|++|++++.|+++.+
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999994 4 89999999996 588899999999999999999997766
Q ss_pred HHHH
Q 038004 300 EQLF 303 (330)
Q Consensus 300 ~~~~ 303 (330)
.+.|
T Consensus 1148 k~~~ 1151 (2272)
T TIGR01257 1148 KNCF 1151 (2272)
T ss_pred HHhc
Confidence 5443
No 274
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.4e-44 Score=363.89 Aligned_cols=215 Identities=29% Similarity=0.432 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++++|+|+||++++||.+||+||||||||||+++|+|++.| .+|+|.+||.++..
T Consensus 328 ~I~f~~vsf~y~~------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 328 SIEFENVSFSYPG------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISL 398 (567)
T ss_pred eEEEEEEEEEcCC------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCH
Confidence 4999999999952 46799999999999999999999999999999999999987 47999999988642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HHH--cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-IRE--MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l~~--~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++++||+|++.+|. -||++||.++..- .+.++..+.++.+ +.. ..+++.+++.+++ ....||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQr 471 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQR 471 (567)
T ss_pred HHHHHhccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHH
Confidence 2467999999999998 4999999887421 2333333333222 111 1345567888874 3468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+++|++||||||||+||+.+...|.+.+.++. +++|+|+|+|.+ ..+.. ||+|+||++|++++.|+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999876 367999999996 45655 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 548 ~eL 550 (567)
T COG1132 548 EEL 550 (567)
T ss_pred HHH
Confidence 553
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-43 Score=314.63 Aligned_cols=196 Identities=23% Similarity=0.342 Sum_probs=162.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYAPD-----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeCCC-----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCH
Confidence 58999999999521 23699999999999999999999999999999999999987 47999999987521
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++. |++||+.+.. .... +.+.+.++ + ++ ++.+|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHH
Confidence 13569999999988874 9999996421 1111 12333333 2 22 4579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||||+.+|++|||||||+|||+..+..++++|+++. + |.|+|++||++ ..+.. ||++++|++|++++.|+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999984 4 89999999996 45654 99999999999998876
No 276
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.6e-43 Score=312.73 Aligned_cols=176 Identities=31% Similarity=0.475 Sum_probs=149.5
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-------ccCcEEEEeCCCC-C
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-------AFGTSAYVTQEDT-L 155 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-------~~~~i~~v~Q~~~-l 155 (330)
++.+|++|||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 456999999999999999999999999999999999999874 7999999987531 1246999999973 2
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllD 235 (330)
+..+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++||||
T Consensus 81 ~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33479999998864322 123445556788999999998766654 5699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|||+|||+..+..+.++|+++++ .|.|||++||++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 99999999999999999999974 589999999996
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=355.08 Aligned_cols=214 Identities=22% Similarity=0.391 Sum_probs=179.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++||++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 256 ~~l~~~~l~~------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~ 320 (501)
T PRK10762 256 VRLKVDNLSG------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRS 320 (501)
T ss_pred cEEEEeCccc------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 4789999973 2699999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP---DSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
.+..++||+|++ .+++.+||.||+.++...... ......+.++++.++++.++|. +..++. +.+
T Consensus 321 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 395 (501)
T PRK10762 321 PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGL 395 (501)
T ss_pred HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhh
Confidence 124699999996 578899999999875321100 0022334456788999999995 455553 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++|||+ ..+..+||++++|++|++
T Consensus 396 LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRILVMHEGRI 473 (501)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 499999999996 588999999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|++++.
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 999886543
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-43 Score=361.44 Aligned_cols=212 Identities=29% Similarity=0.504 Sum_probs=179.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++||++.|+.+ .+.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 337 ~~i~~~~v~f~y~~~-----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYS 408 (574)
T ss_pred CeEEEEEEEEECCCC-----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCC
Confidence 359999999999531 246999999999999999999999999999999999999874 7999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++||+.++.. . ...+.+.++++.+++.+. +++.+++ ....||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LS 477 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLS 477 (574)
T ss_pred HHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c----cCHHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCC
Confidence 23579999999999886 99999977531 1 123457778888888654 4455554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||++. .+ ..||+|++|++|++++
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEE
Confidence 999999999999999999999999999999999999999999985 3799999999963 44 5699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 554 ~g~~~~ 559 (574)
T PRK11160 554 QGTHQE 559 (574)
T ss_pred eCCHHH
Confidence 999654
No 279
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.4e-43 Score=369.24 Aligned_cols=213 Identities=27% Similarity=0.463 Sum_probs=178.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. ..+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 463 ~I~~~~vsf~Y~~-----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDP 534 (694)
T ss_pred eEEEEEEEEEeCC-----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 5999999999952 1346999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ .+++.++++..++. ..+++.+++ ....||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LS 603 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLS 603 (694)
T ss_pred HHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCC----HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCC
Confidence 24679999999999986 99999976521 122 23455566665543 445666654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...|.+.|.++.+ ++|+|+|||++ . ..+.||+|++|++|++++
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl-~-~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT-S-LLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999863 79999999996 3 457899999999999999
Q ss_pred EcChhhHH
Q 038004 293 FGPASMTE 300 (330)
Q Consensus 293 ~g~~~~~~ 300 (330)
.|+.++..
T Consensus 680 ~G~~~eLl 687 (694)
T TIGR03375 680 DGPKDQVL 687 (694)
T ss_pred eCCHHHHH
Confidence 99976543
No 280
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.5e-43 Score=307.41 Aligned_cols=168 Identities=30% Similarity=0.535 Sum_probs=148.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+++++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPGA-----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcCCC-----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHH
Confidence 4789999998521 245999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++. |++||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 13569999999988874 998876 8999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++||++ ..+ ..||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999974 589999999996 455 58999999999874
No 281
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.9e-43 Score=320.27 Aligned_cols=196 Identities=26% Similarity=0.432 Sum_probs=162.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCC--CCCCHHHHHHHHHh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM--TTLTVMEAVYYSAQ 170 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~ 170 (330)
|+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++.....+.++|++|++.++ ..+|+.+|+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 578999999999999999999999999999874 6999999987533345699999998763 34799999987532
Q ss_pred hcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 171 LQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 171 ~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
.... .........+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223445688999999998766654 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 250 MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 250 ~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+.|+++++ .|.|+|++||++ ..+..+||+++++ +|++++.|+.++.
T Consensus 153 ~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999974 589999999996 5788999999999 8999999986543
No 282
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-43 Score=370.90 Aligned_cols=210 Identities=28% Similarity=0.435 Sum_probs=173.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .++.+|+|+||+|++||.++|+||||||||||+++|+|+++| .+|+|.+||+++..
T Consensus 478 ~I~~~nVsf~Y~~~----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVLLDGVPLVQYDH 550 (711)
T ss_pred eEEEEEEEEECCCC----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCH
Confidence 59999999999632 135799999999999999999999999999999999999987 47999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++|||.++.. ..+ ++++.++++..++.+ .+++.+++ ...+||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LS 619 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLS 619 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCC
Confidence 23579999999999986 99999987532 112 244666777776643 34555554 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+ .. . ..++|+|+|||++ . ....||+|++|++|++++
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl-~-~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRL-S-TVERADQILVLKKGSVVE 693 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccH-H-HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988887 22 2 3479999999996 3 456799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 694 ~Gt~~e 699 (711)
T TIGR00958 694 MGTHKQ 699 (711)
T ss_pred eeCHHH
Confidence 999654
No 283
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-44 Score=325.82 Aligned_cols=196 Identities=29% Similarity=0.445 Sum_probs=174.3
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---------ccccCcEEEEeCCCCCCCCC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---------TLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---------~~~~~~i~~v~Q~~~l~~~l 159 (330)
=+++|.++.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||+-+ ...++++||||||..|||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 4688988886799999999999999999999999985 79999999742 12246799999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
||+.||.|+.... .....+++.+.+|+.+.+++ +|..|||||||||+|+|||+..|++|+||||.+
T Consensus 92 tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 92 TVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred EEecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 9999999986421 34567889999999998876 578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~ 305 (330)
+||.....+++-.|++++++....|+++||-+ +++.+++|+|++|.+|++.++|+. .++|..
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~---e~v~~~ 219 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPL---EEVWGS 219 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcH---HHHhcC
Confidence 99999999999999999998899999999995 689999999999999999999994 455543
No 284
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=355.41 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=178.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++| .+|+|+++|+++..
T Consensus 256 ~~l~~~~~~~~-----------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~ 321 (501)
T PRK11288 256 VRLRLDGLKGP-----------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRS 321 (501)
T ss_pred cEEEEeccccC-----------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCC
Confidence 46899999721 389999999999999999999999999999999999987 46999999987531
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQL-PDS--MSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
.+..++|++|++ .+++.+|+.||+.++..... ... ......++.+.++++.++|. +..++. +.+
T Consensus 322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 396 (501)
T PRK11288 322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMN 396 (501)
T ss_pred HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----ccc
Confidence 124699999996 48889999999976532110 000 12233346788999999994 555554 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||+ .++..+||++++|++|++
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVVMREGRI 474 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999974 589999999995 689999999999999999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|.+++
T Consensus 475 ~~~~~~~~ 482 (501)
T PRK11288 475 AGELAREQ 482 (501)
T ss_pred EEEEcccc
Confidence 99998654
No 285
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.4e-43 Score=333.74 Aligned_cols=185 Identities=29% Similarity=0.502 Sum_probs=162.0
Q ss_pred EEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 038004 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179 (330)
Q Consensus 103 IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 179 (330)
|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..+.++|+||++.+++.+||.||+.|+.... ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999874 7999999987632 2356999999999999999999999876432 1234
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 180 ~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
.+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 45567789999999998776654 5799999999999999999999999999999999999999999999999866
Q ss_pred CCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 260 ~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 799999999996 578899999999999999999997654
No 286
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-43 Score=369.15 Aligned_cols=210 Identities=27% Similarity=0.367 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++.+|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|++||.++..
T Consensus 473 ~I~~~~vsf~y~~------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p---~~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 473 DIVINDVSYSYGY------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGFSLKDIDR 543 (708)
T ss_pred cEEEEEEEEEcCC------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CCcEEEECCEEHHHcCH
Confidence 5899999999952 24699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++... ..+. +++.++++..++. ..+++.+++ ....||
T Consensus 544 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LS 613 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSIS 613 (708)
T ss_pred HHHHHheEEEecCceehhH-HHHHHHhccCCC----CCCH----HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCC
Confidence 24579999999999987 999999875211 1222 3355556655543 345666654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|+++ .++|+|+|||++ . ....||+|++|++|++++
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~-~-~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL-S-VAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch-H-HHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999875 278999999996 3 457799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 689 ~G~~~~ 694 (708)
T TIGR01193 689 QGSHDE 694 (708)
T ss_pred ECCHHH
Confidence 999654
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2e-43 Score=309.86 Aligned_cols=175 Identities=35% Similarity=0.548 Sum_probs=148.9
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---- 142 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---- 142 (330)
+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 1 ~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYG-------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEEC-------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHH
Confidence 4789999984 246999999999999999999999999999999999999874 79999999865310
Q ss_pred -cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 -~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
...++|++| +++.++|.+..++ .+.+|||||+||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 122444444 6677777665554 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||++||+.++..+.+.|++++++.+.|+|++||++ ..+.++||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999754489999999996 5788999999999999998654
No 288
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.9e-43 Score=312.96 Aligned_cols=196 Identities=30% Similarity=0.485 Sum_probs=153.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++||++.|..+. ...+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~--~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGE--QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEecCCCC--ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 47899999984210 00136999999999999999999999999999999999999874 79999998 4
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~LSGGqrQR 218 (330)
++|++|++.+++ .|+.||+.+.... .. +...++++.+++.+..+ +.. ...+.+||||||||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qr 135 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF------DE----ERYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQR 135 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc------CH----HHHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHH
Confidence 899999999875 6999999774321 11 12233344444322211 111 12457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++|||||+.+|+++||||||++||+..+..+++. ++++.+ .|.|||++||++ ..+.. ||++++|++|+
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999984 566653 489999999996 46666 99999999985
No 289
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.7e-43 Score=359.72 Aligned_cols=211 Identities=26% Similarity=0.391 Sum_probs=175.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ...+|+|+||++++||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++..
T Consensus 334 ~I~~~~vsf~y~~------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 334 AVEFDDVSFSYDN------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTR 404 (588)
T ss_pred eEEEEEEEEEeCC------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCH
Confidence 5999999999952 235899999999999999999999999999999999999884 7999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ ++++.++++.+++. ..+++.++. ....||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LS 473 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLS 473 (588)
T ss_pred HHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCC
Confidence 23679999999999976 99999977521 122 23355556665543 344555554 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||++ . ..+.||+|++|++|++++
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~-~-~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL-S-TVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH-H-HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998875 379999999996 3 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 550 ~g~~~~l 556 (588)
T PRK13657 550 SGSFDEL 556 (588)
T ss_pred eCCHHHH
Confidence 9996543
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8e-43 Score=322.58 Aligned_cols=211 Identities=19% Similarity=0.266 Sum_probs=166.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++|+++.|+. ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYEN-----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeCC-----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCC
Confidence 36999999999952 124699999999999999999999999999999999999987 47999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~L 211 (330)
..+.++|++|++.+++. |+.+|+.... .... ..+.++++.+++.+..+ +.+ +.++.+|
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~-~~~~~~L 157 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVV-TEGGENF 157 (257)
T ss_pred HHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEe-ccCCCcC
Confidence 13569999999988874 9999884321 0111 12233333333322111 111 1245799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+||++|||||+.+|++|||||||+|||+..+..++++|+++. + +.|||++||++. .+.. ||++++|++|+++
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~-~dri~~l~~G~i~ 233 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVS-TILD-ADLVLVLSRGILV 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChH-HHHh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999874 3 799999999964 5654 9999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 234 ~~g~~~~ 240 (257)
T cd03288 234 ECDTPEN 240 (257)
T ss_pred EeCCHHH
Confidence 9998654
No 291
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-44 Score=377.10 Aligned_cols=255 Identities=41% Similarity=0.640 Sum_probs=228.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LA- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~- 142 (330)
+..|+|+.+..+... +++++|+||+.-++||-++||||+|||||||||++|+|+... ...+|+|+++|.+.. ..
T Consensus 787 V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF 862 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETF 862 (1391)
T ss_pred eEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhh
Confidence 677888888775332 467899999999999999999999999999999999999754 236899999999875 33
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.+|||.|++.+.+.+||+|.|.|.+.++.+...+.+++.+.|+++++.++|+++.+..+|... .+||..||+|+.||
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEE
Confidence 35689999999999999999999999999998888888888999999999999999999998755 88999999999999
Q ss_pred HHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEEcChhh--
Q 038004 223 IEILTRP-KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYFGPASM-- 298 (330)
Q Consensus 223 raL~~~P-~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~g~~~~-- 298 (330)
..|+.+| .||+|||||||||..++..|++.++++++ .|.||+++.|+|+..+++.+|++++|+. |+.|+.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 9999999 89999999999999999999999999995 7999999999999999999999999976 79999999743
Q ss_pred --HHHHHHhCC-CCCCCCCCChhHHHHhhc
Q 038004 299 --TEQLFASNG-FPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 299 --~~~~~~~~g-~~~~~~~~p~~~~~~~l~ 325 (330)
+.++|++.| .+|+...||+++.++...
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~~mLevi~ 1050 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAEWMLEVIG 1050 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHHHHHhhcc
Confidence 467999876 899999999999887653
No 292
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.1e-43 Score=353.83 Aligned_cols=214 Identities=20% Similarity=0.300 Sum_probs=177.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++|+++ .+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 266 ~~~l~~~~l~~------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~ 330 (510)
T PRK15439 266 APVLTVEDLTG------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINAL 330 (510)
T ss_pred CceEEEeCCCC------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCC
Confidence 34799999972 1599999999999999999999999999999999999874 69999999875321
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
+..++|++|++ .+++.+|+.+++.................+++++++++.++|. +..+++ +.+||
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLS 405 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCC
Confidence 24699999985 4888899999986431110000011223345688999999996 555654 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ .++.++||++++|++|++++
T Consensus 406 gG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred cHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 589999999996 68999999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|.+++
T Consensus 484 ~~~~~~ 489 (510)
T PRK15439 484 ALTGAA 489 (510)
T ss_pred EEcccc
Confidence 987654
No 293
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-44 Score=346.43 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=180.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++||+++|+.. ..++|+|+||++++||.+||+|+||||||||+.+|+|.+.|+ +|+|.++|.++...
T Consensus 336 ~l~~~~vsF~y~~~-----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQ-----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCCC-----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCCh
Confidence 79999999999742 357999999999999999999999999999999999999874 79999999875322
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCC
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVS 212 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LS 212 (330)
++.++++.|.+.+|.. |+++||.++.. +...+.+.++++++||++.. ++.+++ ..+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~---------~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP---------DASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC---------CCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCC
Confidence 3468999999999987 99999987532 11235577889999887544 334443 457899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||+|+++.+++||||||.|||+.+..+++++|.+.+ +|+|+|+|||++. -.+.||+|+||++|++++
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie 552 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIE 552 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeee
Confidence 999999999999999999999999999999999999999999876 3899999999963 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|..++.
T Consensus 553 ~G~~~~L 559 (573)
T COG4987 553 EGTHAEL 559 (573)
T ss_pred cCCHHhh
Confidence 9997543
No 294
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=351.27 Aligned_cols=209 Identities=22% Similarity=0.377 Sum_probs=173.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. .
T Consensus 1 ml~i~~ls~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~ 64 (530)
T PRK15064 1 MLSTANITMQFG-------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------E 64 (530)
T ss_pred CEEEEEEEEEeC-------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 378999999983 356999999999999999999999999999999999999874 699999873 3
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh-hc-----------CCCC-----------------CCHHHHHHHHHHHHHHcCC
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ-LQ-----------LPDS-----------------MSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~-~~-----------~~~~-----------------~~~~~~~~~v~~~l~~~~L 195 (330)
.++|++|++.+++.+||.|++.++.. .. .+.. +...+.+.++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 58999999999999999999986531 00 0000 0001234578899999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..... .+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|.|||+||||+ ..+
T Consensus 145 ~~~~~~~----~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~ 215 (530)
T PRK15064 145 PEEQHYG----LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFL 215 (530)
T ss_pred ChhHhcC----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHH
Confidence 7644322 3569999999999999999999999999999999999999999998853 479999999995 578
Q ss_pred HHhccEEEEEeCCeE-EEEcChhh
Q 038004 276 FELFHNLCLLAYGKT-IYFGPASM 298 (330)
Q Consensus 276 ~~~~d~v~vl~~G~i-v~~g~~~~ 298 (330)
..+||++++|++|++ ++.|+.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHH
Confidence 899999999999999 47887653
No 295
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.2e-43 Score=357.05 Aligned_cols=212 Identities=25% Similarity=0.397 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.. .+.+|+|+||++++||.++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 330 ~i~~~~v~f~y~~~-----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTL 401 (571)
T ss_pred eEEEEEEEEEcCCC-----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCH
Confidence 59999999999532 246899999999999999999999999999999999999884 6999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ...+ .+++.++++.+++. +.+++.+++. ...||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LS 471 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLS 471 (571)
T ss_pred HHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCC
Confidence 23569999999999876 99999976521 0112 34566677777664 3455666543 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||..+...+++.|.++. .++|+|+|||++ .....||+|++|++|++++
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999999885 379999999996 3568899999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 548 ~g~~~~ 553 (571)
T TIGR02203 548 RGTHNE 553 (571)
T ss_pred eCCHHH
Confidence 999654
No 296
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4e-42 Score=355.32 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++|+++.|+.+. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~---~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~ 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGE---EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLD 76 (648)
T ss_pred cEEEEeeEEEEeCCCC---CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCC
Confidence 3799999999995321 2356999999999999999999999999999999999999874 7999999987532
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..++. +.+||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~G 148 (648)
T PRK10535 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGG 148 (648)
T ss_pred HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHH
Confidence 1346999999999999999999998765322 223455667889999999998776654 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|+|++||++ ..+ ..||++++|++|++++.|
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 589999999996 445 579999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+.++.
T Consensus 226 ~~~~~ 230 (648)
T PRK10535 226 PAQEK 230 (648)
T ss_pred Ccccc
Confidence 97543
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-43 Score=354.23 Aligned_cols=213 Identities=30% Similarity=0.472 Sum_probs=173.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+.+ ++.+|+|+||++++||.++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 316 ~i~~~~v~~~y~~~-----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 316 HLSVENVTIVPPGG-----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVRLDGADLKQWDR 387 (544)
T ss_pred eEEEEEEEEEcCCC-----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEehhhCCH
Confidence 59999999999531 34689999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++||+.+... ..+.+ ++.++++..++ ++.+++.++. ....||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~-~g~~LS 456 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPE----KIIEAAKLAGVHELILRLPDGYDTVIGP-GGATLS 456 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHH----HHHHHHHHhChHHHHHhCccccccccCC-CcCCCC
Confidence 23579999999999986 99999974321 12222 23333343332 2233444443 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. ..|+|+|++||++ . ....||++++|++|++++
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~-~-~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRP-S-LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999885 3489999999996 3 456899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 534 ~g~~~~l 540 (544)
T TIGR01842 534 FGERDEV 540 (544)
T ss_pred eCCHHHH
Confidence 9996543
No 298
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-43 Score=340.43 Aligned_cols=210 Identities=29% Similarity=0.438 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. .++++|++|||+|++||-+||+|+|||||||++|+|.++... +|+|++||+++..
T Consensus 351 ~I~F~dV~f~y~------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYG------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSL 420 (591)
T ss_pred cEEEEeeEEEeC------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhCh
Confidence 499999999995 234699999999999999999999999999999999999873 6999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.++.|||||||..||.. ||.+||.|+.. ..+ .+++.++.+..++.+ .+.+.+|++ ...||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LS 489 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLS 489 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccc
Confidence 24569999999999987 99999988742 122 244666666666644 445556653 45899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+||||++.+|+|++||||||+||..+...+++.+.+. ..++|+|+|-|++ .....||+|++|++|++.+
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e 565 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKE 565 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEE
Confidence 99999999999999999999999999999999999999999995 3489999999995 4667899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 566 ~gth~el 572 (591)
T KOG0057|consen 566 YGTHSEL 572 (591)
T ss_pred eccHHHH
Confidence 9996543
No 299
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.2e-42 Score=309.94 Aligned_cols=200 Identities=26% Similarity=0.350 Sum_probs=158.1
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
.+.|+.+.|+. ...+++|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWGS------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCcccccccccc
Confidence 46788888842 34699999999999999999999999999999999999977 47999999975421
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~L 211 (330)
.+..++|++|++.++ ..|+.||+.+... ... +...++++.++|.+..+.. ..+.++.+|
T Consensus 73 ~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 141 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL 141 (218)
T ss_pred cchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcC
Confidence 124599999999887 5799999976431 111 2234556666664332210 012346799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK--RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||||||||+|||||+.+|++|||||||++||+.++..+++ +++.+. +.|.|+|++||++ ..+ ..||++++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 9999999999999999999999999999999999999998 666664 5689999999996 455 5799999999874
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-42 Score=350.18 Aligned_cols=208 Identities=29% Similarity=0.374 Sum_probs=172.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|. +++.+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------
Confidence 5799999999993 135799999999999999999999999999999999999987 4699999752
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhh-c------------CCCCCC--------------------HHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQL-Q------------LPDSMS--------------------RSEKRERAEMTI 190 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l 190 (330)
..++||+|++.+++.+||.||+.++... . ...... ..+..+++.+++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3599999999999999999999875320 0 000000 001245678899
Q ss_pred HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 191 ~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
+.+||.. .++ .+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++. .|||+||||
T Consensus 150 ~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviiisHd 219 (556)
T PRK11819 150 DALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAVTHD 219 (556)
T ss_pred HhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEEeCC
Confidence 9999953 444 356999999999999999999999999999999999999999999998762 499999999
Q ss_pred chHHHHHhccEEEEEeCCeEE-EEcChh
Q 038004 271 PSSDVFELFHNLCLLAYGKTI-YFGPAS 297 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~~G~iv-~~g~~~ 297 (330)
+ ..+..+||+|++|++|+++ +.|+.+
T Consensus 220 ~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 220 R-YFLDNVAGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred H-HHHHhhcCeEEEEeCCEEEEecCCHH
Confidence 5 6889999999999999986 677754
No 301
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.7e-42 Score=298.39 Aligned_cols=163 Identities=32% Similarity=0.487 Sum_probs=143.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++|+++.|+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|. +.
T Consensus 1 i~~~~~~~~~~~------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~ 65 (166)
T cd03223 1 IELENLSLATPD------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------ED 65 (166)
T ss_pred CEEEEEEEEcCC------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ce
Confidence 468999999842 246999999999999999999999999999999999999874 799999874 46
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++|++.++ .+|+.||+.+. .+.+||||||||++|||||
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral 106 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHH
Confidence 99999998765 57999998542 1258999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
+.+|++|||||||++||+..+..+.+.|+++ +.|+|++||++ .. ..+||++++|+++
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~~-~~~~d~i~~l~~~ 163 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-SL-WKFHDRVLDLDGE 163 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-hH-HhhCCEEEEEcCC
Confidence 9999999999999999999999999999875 58999999996 34 4699999999875
No 302
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-42 Score=346.29 Aligned_cols=217 Identities=23% Similarity=0.322 Sum_probs=173.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.++. .+|+|+++|++...
T Consensus 258 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 258 EPRIVLNNGVVSYN-------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSG 328 (490)
T ss_pred CceEEEeceEEEEC-------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCC
Confidence 45799999999993 346999999999999999999999999999999999987531 36999999975421
Q ss_pred -----ccCcEEEEeCCCCCCC--CCCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMT--TLTVMEAVYYSAQL--QLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~L 211 (330)
.+..++|++|++.+++ ..++.+++.++... ...... ....+++++++++.++|.+ ..++ ++.+|
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 402 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADA-----PFHSL 402 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccC-----chhhC
Confidence 1246999999876543 35777766543210 000011 1233567889999999986 5555 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH-hccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE-LFHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~-~~d~v~vl~~G~i 290 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++|||+ .++.. +||++++|++|++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDI 481 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCce
Confidence 999999999999999999999999999999999999999999999865345799999996 56776 6999999999999
Q ss_pred EEEcC
Q 038004 291 IYFGP 295 (330)
Q Consensus 291 v~~g~ 295 (330)
++.-.
T Consensus 482 ~~~~~ 486 (490)
T PRK10938 482 YRYVQ 486 (490)
T ss_pred EEeec
Confidence 87643
No 303
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.1e-42 Score=351.81 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .++.+|+|+||++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 337 ~i~~~~v~f~y~~~----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDP 409 (576)
T ss_pred eEEEEEEEEECCCC----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 58999999999632 1256999999999999999999999999999999999999874 6999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++.+|+. |++|||.++.. ..+ .+++.++++.+++.+ ..++.+++ ....||
T Consensus 410 ~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LS 478 (576)
T TIGR02204 410 AELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLS 478 (576)
T ss_pred HHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCC
Confidence 13569999999999876 99999976421 112 244666777776643 23444443 346799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++||||++.+|++||||||||+||+.+...+++.|+++. + ++|+|++||++ .....||++++|++|++++
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~-~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-K-GRTTLIIAHRL--ATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-C-CCEEEEEecch--HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999985 3 79999999996 3457799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 555 ~g~~~~ 560 (576)
T TIGR02204 555 QGTHAE 560 (576)
T ss_pred eecHHH
Confidence 999654
No 304
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=300.12 Aligned_cols=166 Identities=34% Similarity=0.557 Sum_probs=145.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~~~-----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPGR-----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCCC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHH
Confidence 4789999998421 136899999999999999999999999999999999999874 6999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 1246999999998776 5888776 8999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||+.+|++|||||||+|||+..+..+.++|+++. + +.|+|++||++ ..+.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999985 4 69999999996 46766 99999999884
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.1e-42 Score=295.39 Aligned_cols=156 Identities=29% Similarity=0.476 Sum_probs=139.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++++++++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFG-------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHH
Confidence 47899999994 246999999999999999999999999999999999999874 6999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++| |||||+||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 1234666666 899999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|+|++||++ ..+..+||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999974 489999999995 57889999999999999875
No 306
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-42 Score=359.86 Aligned_cols=211 Identities=24% Similarity=0.421 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ..+.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|+ +|+|++||.++..
T Consensus 455 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAP-----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 5999999999953 2346999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ .+.+.++++..++. ..+++.+++ ....||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LS 595 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLS 595 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCC
Confidence 23579999999999886 99999976421 122 23344555555543 345565554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+++.|+++. .++|+|++||++ ..+ ..||++++|++|++++
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDRIIVLEKGQIAE 671 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999985 379999999996 444 5699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 672 ~g~~~~ 677 (694)
T TIGR01846 672 SGRHEE 677 (694)
T ss_pred eCCHHH
Confidence 999654
No 307
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-43 Score=297.75 Aligned_cols=228 Identities=25% Similarity=0.371 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe---c
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK---E 139 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~---~ 139 (330)
.|+|+++++++.|. ...-.+||||.+.|||++||+|+||||||||++||++.+.|+ .|+|.+.-.. .
T Consensus 4 ~PLL~V~~lsk~Yg-------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~ 73 (258)
T COG4107 4 KPLLSVSGLSKLYG-------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPR 73 (258)
T ss_pred CcceeehhhhhhhC-------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCch
Confidence 46899999999983 344689999999999999999999999999999999999884 6999986532 1
Q ss_pred c-----c------ccCcEEEEeCCCC--CCCCCCHHHHH----HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 038004 140 T-----L------AFGTSAYVTQEDT--LMTTLTVMEAV----YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202 (330)
Q Consensus 140 ~-----~------~~~~i~~v~Q~~~--l~~~lTv~e~l----~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~ 202 (330)
. . .+-..|||.|+|. |-...+...|+ .-....+ -...++.+.++|+++.++...-.
T Consensus 74 dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH------YG~iR~~a~~WL~~VEI~~~RiD- 146 (258)
T COG4107 74 DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH------YGNIRAEAQDWLEEVEIDLDRID- 146 (258)
T ss_pred hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh------hhhHHHHHHHHHHhcccCccccc-
Confidence 1 0 0123799999985 33333333443 2111111 12456778889999998754322
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 203 ~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
..|+.+||||+||+.|||-|+..|+++++||||-|||...++.++++++.+.++.|.+++++|||+ ..+.-++||.
T Consensus 147 ---D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rl 222 (258)
T COG4107 147 ---DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRL 222 (258)
T ss_pred ---CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcc
Confidence 247899999999999999999999999999999999999999999999999999999999999995 7888899999
Q ss_pred EEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 283 CLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 283 ~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++|++|++++.|-+ .+++ .+|.|+|++.|
T Consensus 223 mvmk~g~vve~GLT---DrvL----------DDP~hPYTQLL 251 (258)
T COG4107 223 MVMKQGQVVESGLT---DRVL----------DDPHHPYTQLL 251 (258)
T ss_pred eeecCCCEeccccc---cccc----------cCCCCchHHHH
Confidence 99999999999974 3445 59999999876
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-42 Score=382.38 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=179.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-------------------
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN------------------- 125 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~------------------- 125 (330)
.++++||+|.|+.+ .+.++|+|+||+|++|+.+||+||||||||||+++|+|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCC----CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 59999999999742 2346999999999999999999999999999999999999872
Q ss_pred --------------------------------CCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 126 --------------------------------TEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 126 --------------------------------~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.+.+|+|++||.++.. .++.++||+|+|.||.. |++|||.++
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcC
Confidence 0147999999998632 24679999999999975 999999886
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.. ..+. +.+.++++..+ |++.+++.++. +...||||||||++|||||+++|+|||||||||+|
T Consensus 1320 ~~-----~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1320 KE-----DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred CC-----CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 32 1222 33555555544 55667888875 45689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC----CeEE-EEcChhh
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY----GKTI-YFGPASM 298 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~----G~iv-~~g~~~~ 298 (330)
|+.+.+.|.+.|.++....++|+|+|+|++ .. .+.||+|++|++ |+++ +.|+.++
T Consensus 1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRl-st-i~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRI-AS-IKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEechH-HH-HHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 999999999999988533489999999996 34 467999999999 9955 8999654
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-41 Score=300.11 Aligned_cols=231 Identities=28% Similarity=0.371 Sum_probs=195.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++... +++.||++||++|++||+++|+||||||||||.++|+|.-.. ..++|+|.|+|+++..
T Consensus 2 ~~L~I~dLhv~v~------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVEVE------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEEec------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCC
Confidence 3799999999983 125899999999999999999999999999999999998654 4578999999998632
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGq 215 (330)
.+..+...||.|.=+|..|+.+.|..+....... .. ..+...++++.++.+++.+ ++++.+. ..+||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGE 149 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGE 149 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcch
Confidence 2345788899999999999999998876543211 11 2456778899999999987 4555443 4899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc--cEEEEEeCCeEEEE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF--HNLCLLAYGKTIYF 293 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~--d~v~vl~~G~iv~~ 293 (330)
|+|..|+..++.+|++.|||||-||||...-+.|.+.+..++ +.|.++|+|||.. .+..+. |++.||.+|+|+..
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999997 5599999999983 566666 99999999999999
Q ss_pred cChhhHHHHHHhCCCCC
Q 038004 294 GPASMTEQLFASNGFPC 310 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~ 310 (330)
|.+ ++.+.++..||.|
T Consensus 227 G~~-el~~~le~~gy~~ 242 (251)
T COG0396 227 GDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCH-HHHHHHHHhchHH
Confidence 998 5777777778765
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-42 Score=345.89 Aligned_cols=206 Identities=22% Similarity=0.340 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGFD-------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEeeC-------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 4799999999983 346999999999999999999999999999999999999874 699999874
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHH
Q 038004 144 GTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 144 ~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++. +++.+|+.+++.+.. .. ...++++.++++.+++. +..++ ++.+|||||||||+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~ 448 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRML 448 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHHH
Confidence 35999999974 566799999986421 00 11235678899999995 45554 45799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~~ 299 (330)
|||||+.+|++|||||||++||+.++..+++.|+++ +.|||++|||+ ..+..+||++++|++|+++ +.|+.
T Consensus 449 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~--- 520 (530)
T PRK15064 449 FGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTY--- 520 (530)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCH---
Confidence 999999999999999999999999999999998875 34999999995 5888999999999999998 77874
Q ss_pred HHHHHhC
Q 038004 300 EQLFASN 306 (330)
Q Consensus 300 ~~~~~~~ 306 (330)
.+++...
T Consensus 521 ~~~~~~~ 527 (530)
T PRK15064 521 EEYLRSQ 527 (530)
T ss_pred HHHHHHh
Confidence 3445433
No 311
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-42 Score=350.16 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+. +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 313 ~I~~~~v~~~y~~-----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQL 384 (569)
T ss_pred cEEEEEEEEECCC-----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCH
Confidence 5899999999952 2346899999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++.+|+. |++||+.++.. ..+. +.+.++++.+++ ++.+++.++. ....||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LS 453 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLS 453 (569)
T ss_pred HHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCC
Confidence 23569999999999986 99999976521 1222 234455555554 3344555554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+++.|+++. .++|+|++||++ .. ...||++++|++|++++
T Consensus 454 gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~-~~-~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL-SA-LTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch-hH-HHcCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999875 389999999996 34 46799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 530 ~g~~~~l 536 (569)
T PRK10789 530 RGNHDQL 536 (569)
T ss_pred ecCHHHH
Confidence 9996543
No 312
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.9e-42 Score=313.95 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=161.1
Q ss_pred eEEeeEEEEe-----CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCH
Q 038004 87 ILQELTGYVE-----PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 87 iL~~vsl~i~-----~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv 161 (330)
.+.+++|++. +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|++.+++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5666666665 79999999999999999999999999874 699999985 48999999887778899
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.|++.+...... . ....+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976432110 1 123467889999998766654 5699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE--EEcChhhH----HHHHHhCCC
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI--YFGPASMT----EQLFASNGF 308 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv--~~g~~~~~----~~~~~~~g~ 308 (330)
|+..+..+.++|++++++.|+|||++|||+ ..+..+||++++|+++..+ ..+++..+ ..++...+.
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDI 218 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCC
Confidence 999999999999999866689999999995 5788899999999765433 33444332 345555554
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-41 Score=317.17 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=162.0
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
..+.|+++|+++.. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 36 ~~~~l~i~nls~~~---------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLVG---------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEec---------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-----
Confidence 34579999999851 35899999999999999999999999999999999999874 69999987
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCCHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT-------RIGGWNVRGVSGG 214 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-------~~~~~~~~~LSGG 214 (330)
.++|++|++.+++. ||.||+.+.... .. .++.++++.+++.+..+. .+ +..+.+||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgG 163 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGG 163 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHH
Confidence 38999999988875 999999764311 11 122334444554332211 11 1235699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||++|||||+.+|++|||||||+|||+..+..+++.+ ..+. + +.|||++||++ ..+ ..||++++|++|++++.
T Consensus 164 q~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 164 QRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKM-EHL-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998865 5554 3 78999999996 455 58999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 240 g~~~~~ 245 (282)
T cd03291 240 GTFSEL 245 (282)
T ss_pred CCHHHH
Confidence 997554
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-41 Score=348.86 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=172.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. .+.+|+|+||+|++||.++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 334 ~i~~~~v~~~y~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 334 AVEFRHITFEFAN------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTR 404 (585)
T ss_pred eEEEEEEEEECCC------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCH
Confidence 5999999999952 23589999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+++. |++||+.++.. ..+.++ +.++++..++ +...++.++. ....||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LS 473 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLS 473 (585)
T ss_pred HHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CCCCCC
Confidence 23579999999998874 99999977531 122222 3333443333 2333444443 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|++||++ ..+ ..||+|++|++|++++
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIE 549 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 389999999996 455 5699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 550 ~g~~~~l 556 (585)
T TIGR01192 550 KGSFQEL 556 (585)
T ss_pred ECCHHHH
Confidence 9996543
No 315
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-42 Score=343.35 Aligned_cols=215 Identities=21% Similarity=0.340 Sum_probs=176.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.+ +.+|++|||+|++||++||+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 248 ~~~i~~~~l~~~~---------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 315 (491)
T PRK10982 248 EVILEVRNLTSLR---------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNH 315 (491)
T ss_pred CcEEEEeCccccc---------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCC
Confidence 3579999999863 24899999999999999999999999999999999999874 79999999875321
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHH-hhcCC-CC-CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSA-QLQLP-DS-MSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVR 209 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~ 209 (330)
...++|++|++ .+++.+|+.+|+.+.. ..... .. ......++.+.++++.+++. +..++ ++.
T Consensus 316 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 390 (491)
T PRK10982 316 NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIG 390 (491)
T ss_pred CHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccc
Confidence 23489999985 4788888887743221 11100 01 12234456788899999995 34444 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||++|||+ .++..+||++++|++|+
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRILVMSNGL 468 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999974 599999999996 58889999999999999
Q ss_pred EEEEcCh
Q 038004 290 TIYFGPA 296 (330)
Q Consensus 290 iv~~g~~ 296 (330)
++..++.
T Consensus 469 i~~~~~~ 475 (491)
T PRK10982 469 VAGIVDT 475 (491)
T ss_pred EEEEEcc
Confidence 9987764
No 316
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-42 Score=361.90 Aligned_cols=213 Identities=29% Similarity=0.427 Sum_probs=183.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+|.||++ .+.+||+|+||++++|+.+||||||||||||++.+|-.++.|. +|.|.+||.++..
T Consensus 987 ~I~~~~V~F~YPsR----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred EEEEeeeEeeCCCC----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCH
Confidence 49999999999853 4688999999999999999999999999999999999999874 7999999988642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE-------MGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~~~~~~~~~LS 212 (330)
.+++++.|.|+|.||.. |++|||.|+.. ..+..+ +.++++. .+|++.+|+.+|++ ..+||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGer-G~QLS 1128 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGER-GVQLS 1128 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcc-cCcCC
Confidence 24689999999999987 99999999821 123333 3333332 36889999999975 45999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||+|||||+++||+||||||.||+||.++.+.+.+.|.+.. .|+|.|+|.|.+. -.+.||.|+|+++|+|+|
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999985 3899999999963 356799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 1205 ~GtH~~L 1211 (1228)
T KOG0055|consen 1205 QGTHDEL 1211 (1228)
T ss_pred cccHHHH
Confidence 9996543
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-41 Score=344.72 Aligned_cols=209 Identities=29% Similarity=0.369 Sum_probs=170.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+++++||++.|. +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~i~~~nls~~~~------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVP------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------ 67 (552)
T ss_pred EEEEEeeEEEecC------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------
Confidence 4799999999993 1346999999999999999999999999999999999999874 699999752
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcC------------CCCCCHH---------------------HHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQL------------PDSMSRS---------------------EKRERAEMTI 190 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~---------------------~~~~~v~~~l 190 (330)
..++||+|++.+++.+||.||+.++..... ....... ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 369999999999999999999987532100 0000000 0124566778
Q ss_pred HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 191 ~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
+.+++.. .++ .+.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd 217 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHD 217 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCC
Confidence 8888853 333 45799999999999999999999999999999999999999999998775 2499999999
Q ss_pred chHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 271 PSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
+ ..+..+||++++|++|+++ +.|+.++
T Consensus 218 ~-~~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 218 R-YFLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred H-HHHHhhcCeEEEEECCEEEEecCCHHH
Confidence 5 6888999999999999976 6677653
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-43 Score=298.45 Aligned_cols=194 Identities=28% Similarity=0.445 Sum_probs=171.3
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMT 157 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~ 157 (330)
++..+|+++||++.+||..+|.||||||||||+|+++-|++| ++|+++|.|++.+. .+.+|+|+.|.|.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 356799999999999999999999999999999999999988 47999999998642 2357999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
. ||++|+.|+..++... ..+..+.++|++++|.+..-.+ .+.+||||||||++|+|-|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 8 9999999988765321 2456788899999998764332 3569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||+||+.+...|-++|.++.+++..+++-||||. +...+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 9999999999999999999878899999999995 577899999999999876
No 319
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.7e-41 Score=304.35 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=159.5
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-ECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-INGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|. ++|... .+.+.+.+++.+|+.||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999874 79997 777532 13356778899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.+....+. ....+. ...+.+.++|....++. +.+||||||||++|||||+.+|+++||||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988665331 222222 22344567777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 038004 245 ASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~ 305 (330)
.+..+++.|.+..+ +.++|++||++ ..+..+||++++|++|++++.++.++...++..
T Consensus 139 ~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866543 46899999996 578889999999999999999998877666543
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-41 Score=300.31 Aligned_cols=190 Identities=25% Similarity=0.333 Sum_probs=157.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~ 144 (330)
|+++|+++.|. ++.+++ +||+|++||+++|+|+||||||||+++|+|+.+| .+|+|.++|.++... ..
T Consensus 2 l~~~~l~~~~~-------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE-------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEEC-------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCcccChhhhh
Confidence 78999999983 234554 9999999999999999999999999999999987 479999999875321 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+||.||+.+..... . ..+++.++++.+++.+..++. +.+||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 5899999988888899999998754321 0 134577889999998766654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
|+.+|++|||||||+|||+.++..+.++|++.. +.|.|+|++||++. .+ ..+|-+
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999999999998765 46899999999963 33 346654
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.9e-41 Score=342.12 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=169.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ...+|+|+||+|++||.++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 322 ~i~~~~v~f~y~~------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQD------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeCC------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCH
Confidence 5999999999952 235899999999999999999999999999999999999874 7999999997642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.+++++||+|++.+|+. |+++| + . ....+.+.++++.+++....+..-+......||||||||+
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c-----C-----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 23579999999998875 77776 1 0 1223457788899988765432110001258999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||||+.+|++|||||||++||+.+...+.+.|.+..++.++|+|++||++ .....||++++|++|++++...
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999998876544589999999996 3567899999999999998744
No 322
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-42 Score=309.38 Aligned_cols=225 Identities=25% Similarity=0.395 Sum_probs=186.4
Q ss_pred eEEEEeEEEEecCCc--------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 65 FLTWKDLSVVVPSGK--------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
++.++||++.|+..- +++....+++||||+|++|+++|++|+|||||||++|+|+|++.|. +|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CC
Confidence 466777877764210 1122346899999999999999999999999999999999999984 79
Q ss_pred EEEECCEecccc----cCcEEEEe-CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 131 EILINGRKETLA----FGTSAYVT-QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 131 ~I~~~g~~~~~~----~~~i~~v~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
.|.++|...-.. .+++++|+ |.-.+...+-+.+.+.....++ ..+.++-+++.+.+.+.++|+...+.+
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~--- 153 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP--- 153 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh---
Confidence 999999753211 13467765 5556666666777776554443 356778889999999999999888775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++.||-|||.|+.||.+|+++|++|+|||||-|||+..+..|.+.|++..++++.||+++||++ +.+..+||||++|
T Consensus 154 --vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I 230 (325)
T COG4586 154 --VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLI 230 (325)
T ss_pred --hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEe
Confidence 5799999999999999999999999999999999999999999999999988999999999996 6899999999999
Q ss_pred eCCeEEEEcChhhHHH
Q 038004 286 AYGKTIYFGPASMTEQ 301 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~ 301 (330)
+.|++++.|+.++..+
T Consensus 231 ~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 231 DQGQLVFDGTLAQLQE 246 (325)
T ss_pred eCCcEeecccHHHHHH
Confidence 9999999999765544
No 323
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-41 Score=344.60 Aligned_cols=185 Identities=30% Similarity=0.479 Sum_probs=155.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++.+|+|+||+|++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++..
T Consensus 334 ~I~~~~vsf~Y~~------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 334 TLELRDLSFGYPG------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQD 404 (529)
T ss_pred eEEEEEEEEecCC------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHH
Confidence 5999999999952 235999999999999999999999999999999999999884 7999999987642
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LSG 213 (330)
.+++++||+|++.+|+. |++|||.++.. ..+ ++++.++++..++. +.+++.+++ ....|||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSG 473 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DAT----DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSG 473 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhccCC-----CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCH
Confidence 23579999999999987 99999987531 112 24466667766654 455777765 3457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|||||++|||||+++|++||||||||+||+.+...|.+.|.++. .++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999874 479999999983
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=9.7e-41 Score=340.83 Aligned_cols=200 Identities=26% Similarity=0.327 Sum_probs=172.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. +. .|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE------- 399 (590)
T ss_pred ceEEEEcceEEEEC-------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe-------
Confidence 46799999999983 22 499999999999999999999999999999999999874 6999986
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++|++|++.+++.+||.|++.+.... ... ...+.++++.++|.+..++ ++.+|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHH
Confidence 1489999999888899999999875321 111 2346789999999876665 4579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ .++..+||++++|+ |++...|..
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999999999999866689999999995 58889999999996 477766653
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-41 Score=372.48 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=176.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~-----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECC-----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCH
Confidence 5999999999942 2246999999999999999999999999999999999999874 7999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |++|||.++. ..+ .+.+.++++..++.+ .+++.+++ ....||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1373 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFS 1373 (1495)
T ss_pred HHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCC
Confidence 24679999999999987 9999996431 112 234666777766643 44555554 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++ ..+ ..||+|++|++|++++
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl-~ti-~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL-NTI-IDCDKILVLSSGQVLE 1449 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 379999999996 345 4599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1450 ~Gt~~eL 1456 (1495)
T PLN03232 1450 YDSPQEL 1456 (1495)
T ss_pred ECCHHHH
Confidence 9998654
No 326
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-41 Score=302.71 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=183.8
Q ss_pred CCceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc
Q 038004 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140 (330)
Q Consensus 61 ~~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~ 140 (330)
.+.++|+++||++.| +++.||+|||++|++||-++|+||||||||||+++++|..+|. +|.+.+.|+...
T Consensus 27 ~~~~li~l~~v~v~r-------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G 96 (257)
T COG1119 27 INEPLIELKNVSVRR-------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFG 96 (257)
T ss_pred CCcceEEecceEEEE-------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeecc
Confidence 345789999999998 4678999999999999999999999999999999999999874 699999998642
Q ss_pred ------cccCcEEEEeCC--CCCCCCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 141 ------LAFGTSAYVTQE--DTLMTTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 141 ------~~~~~i~~v~Q~--~~l~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
..+++||||.-. ..+.+..+|+|.+.-+.. .........++...++..+++.+|+.+..++.+ ..
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~ 171 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GS 171 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hh
Confidence 124679998643 345567788888754331 222111234566788999999999999888865 48
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE-DGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||-||||||.|||||+.+|++|||||||+|||...+..+++.|.+++.. .+.++|+|||+. +++-..+++++.+++|+
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~ 250 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGE 250 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999743 278999999995 68999999999999999
Q ss_pred EEEEcC
Q 038004 290 TIYFGP 295 (330)
Q Consensus 290 iv~~g~ 295 (330)
+++.|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 998874
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-40 Score=338.40 Aligned_cols=204 Identities=22% Similarity=0.333 Sum_probs=169.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~----- 386 (556)
T PRK11819 322 DKVIEAENLSKSFG-------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET----- 386 (556)
T ss_pred CeEEEEEeEEEEEC-------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-----
Confidence 35799999999983 346999999999999999999999999999999999999874 699999542
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++ .+++.+||.|++.++..... .... ...+..+++.++|.. ..++ .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 2599999996 68889999999987643211 1111 123557899999964 3454 35699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEE-EEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTI-YFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv-~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..++++|.++. | |||++|||+ ..+..+||++++|++ |++. +.|+.+
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999998862 4 899999995 588999999999986 7876 466643
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.6e-41 Score=372.48 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=177.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +..++|+||||+|++||.+||+|+||||||||+++|+|++.|. +|+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~-----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred cEEEEEEEEEeCC-----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 5999999999952 1246999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. |++|||.++. ..+ ++.+.++++..++. ..+++.+++ ....||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLS 1376 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFS 1376 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCC
Confidence 24679999999999987 9999996432 112 23466666666553 345666654 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||..+...|.+.|++.. .++|+|+|+|++. .+ ..||+|+||++|+|++
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVE 1452 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875 3799999999964 45 4599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1453 ~Gt~~eL 1459 (1622)
T PLN03130 1453 FDTPENL 1459 (1622)
T ss_pred eCCHHHH
Confidence 9998764
No 329
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.8e-41 Score=339.37 Aligned_cols=198 Identities=32% Similarity=0.464 Sum_probs=165.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .+++|+|+||+|++||.++|+||||||||||+|+|+|+++|. +|+|.++|.++..
T Consensus 320 ~i~~~~v~f~y~~~-----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCCC-----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCH
Confidence 59999999999632 246899999999999999999999999999999999999884 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++||+.++.. ..+ ++.+.++++.+++.+ .+++.+++ ....||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LS 460 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLS 460 (529)
T ss_pred HHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCC
Confidence 23579999999999975 99999977531 112 234666777776644 34555554 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|.++. .++|+|++||++ .. .+.||+|++|
T Consensus 461 gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~-~~~~d~i~~l 529 (529)
T TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL-AL-AERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HH-HHhCCEEEeC
Confidence 999999999999999999999999999999999999999999875 479999999996 34 4679999885
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-40 Score=337.20 Aligned_cols=203 Identities=22% Similarity=0.346 Sum_probs=169.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 320 ~~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~----- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFG-------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET----- 384 (552)
T ss_pred CeEEEEeeEEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc-----
Confidence 35799999999983 346999999999999999999999999999999999999874 699999542
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++ .+++.+||.|++.++..... .... ..++.++++.++|.. ..++ ++.+|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999997 48888999999987643211 1111 223567899999964 3444 35699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEE-EEcCh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTI-YFGPA 296 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv-~~g~~ 296 (330)
|||||+.+|++|||||||+|||+.++..+.++|+++. + |||++|||+ ..+..+||++++|++ |+++ +.|+.
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999872 4 899999995 588899999999987 5876 45654
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-40 Score=337.93 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=168.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 337 ~i~~~~v~f~y~~~~~--~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 337 SIELKDVHMNPKAPEG--SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSR 411 (555)
T ss_pred eEEEEEEEEEeCCCCC--CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 5999999999963210 1235999999999999999999999999999999999999874 7999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-CCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG-WNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-~~~~~LSGGqrQR 218 (330)
.++.++||+|++.+|.. |+++|+. +...++++.++++.+++.+..+....+ .....||||||||
T Consensus 412 ~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qR 478 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKR 478 (555)
T ss_pred HHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHH
Confidence 23569999999998876 7777731 112345677889999987654432111 1135799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV-NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
++|||||+.+|++|||||||++||+.+...+.+.+. .+. ..|+|+|++||++ . ....||+|++|++|++++.-
T Consensus 479 lalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~-~-~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 479 LALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDD-Q-YFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccH-H-HHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999988664 443 4589999999996 3 45789999999999998653
No 332
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-40 Score=367.97 Aligned_cols=211 Identities=20% Similarity=0.313 Sum_probs=177.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+++|+.+ ...+|+||||+|++||.+||+|+||||||||+++|+|+++|. +|+|++||.++..
T Consensus 1308 ~I~f~nVsf~Y~~~-----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCCC-----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 59999999999532 245999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. ||++||.... ..+ .+.+.++++.++|.+ .+++.++. ....||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLS 1447 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYS 1447 (1560)
T ss_pred HHHHhcceEECCCCccccc-cHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCC
Confidence 24679999999999987 9999995311 122 245777888877754 34566654 345899
Q ss_pred HHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 213 GGQKRRVSICIEILTR-PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 213 GGqrQRv~IAraL~~~-P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++. ....||+|++|++|+|+
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999996 89999999999999999999999998864 3799999999963 44679999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 1524 E~Gt~~eL 1531 (1560)
T PTZ00243 1524 EMGSPREL 1531 (1560)
T ss_pred EECCHHHH
Confidence 99997654
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-41 Score=290.18 Aligned_cols=218 Identities=28% Similarity=0.401 Sum_probs=188.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC-Eeccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETL- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g-~~~~~- 141 (330)
+.|+++||+++| ++..+|+++||++.+||+-+|||||||||||+|.+|+|..+| ++|+++|+| .++..
T Consensus 4 ~iL~~~~vsVsF-------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF-------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE-------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccC
Confidence 579999999999 457899999999999999999999999999999999999987 469999999 55432
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-----SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+..||--||.|..|+.+||+|||..+....... .....+.+.+++++|+..||.+..+... ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 1234788899999999999999998875422110 0122345678999999999999887754 489
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|.||||++.|++.|+++|++|+||||++|+--....+.-++|+.++. ..+|+++.||+ .++..++++|.||+.|.+.
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDM-GFVREIADKVTVLHEGSVL 225 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccH-HHHHHhhheeEEEecccee
Confidence 99999999999999999999999999999999999999999999974 68999999996 6999999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+.+++
T Consensus 226 ~EGsld~v 233 (249)
T COG4674 226 AEGSLDEV 233 (249)
T ss_pred ecccHHHh
Confidence 99996543
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.5e-40 Score=365.45 Aligned_cols=213 Identities=27% Similarity=0.408 Sum_probs=170.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC-CEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN-GRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~-g~~~~~-- 141 (330)
.|+++||++.|+.. ..+++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~~----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCCC----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCC
Confidence 59999999999632 2346999999999999999999999999999999999999874 7999994 565421
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC----------CCC--------------------------------
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL----------PDS-------------------------------- 176 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~----------~~~-------------------------------- 176 (330)
.+++++||+|++.+|+. |++|||.++..... ...
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 23569999999999975 99999998631000 000
Q ss_pred -C-----CHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 177 -M-----SRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 177 -~-----~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
+ ......+.+.++++.+++.+. +++.++. .+.+||||||||++|||||+.+|++||||||||+||+
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 0 001123457777777776543 3444543 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.++..|.+.|+++.++.|+|+|+|||++ ..+ +.||+|++|++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRL-STI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence 9999999999999754589999999996 455 689999999986
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.7e-40 Score=367.59 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.+ ...+|+||||+|++||.+||+|+||||||||+++|.|++.| .+|+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~-----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES---AEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred cEEEEEEEEEeCCC-----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEEECCEEccccCH
Confidence 59999999999632 23699999999999999999999999999999999999987 46999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |+++||.... ..+. +.+.++++.+++. +.+++.+++ ....||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1423 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLS 1423 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCC
Confidence 24679999999999987 9999995211 1222 3466677777664 345666654 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++. . ...||+|+||++|+|++
T Consensus 1424 gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 3799999999963 4 45699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1500 ~G~~~eL 1506 (1522)
T TIGR00957 1500 FGAPSNL 1506 (1522)
T ss_pred ECCHHHH
Confidence 9997653
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=320.67 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
-.|.++++++.=| + .++++|++|||++.+||.+|||||||||||||.|+|.|..+| .+|.|++||-++..
T Consensus 333 g~L~Ve~l~~~PP-g----~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd 404 (580)
T COG4618 333 GALSVERLTAAPP-G----QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWD 404 (580)
T ss_pred ceeeEeeeeecCC-C----CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCC
Confidence 3699999998533 2 357899999999999999999999999999999999999987 47999999976532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHH-----HHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK-----RERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
..++|||+||+-.||+. ||.|||.-.. ...+.+.. ...+.+++ +.|++.+++.+|+. ...|||
T Consensus 405 ~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~-----~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~-G~~LSg 475 (580)
T COG4618 405 REQLGRHIGYLPQDVELFDG-TIAENIARFG-----EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEG-GATLSG 475 (580)
T ss_pred HHHhccccCcCcccceecCC-cHHHHHHhcc-----ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCC-CCCCCc
Confidence 23579999999999998 9999994221 11122211 11122222 46788899999863 468999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||+++||||..+|.+++||||-|+||......+.+.|...+ ++|.|+|+|+|.| .+...+|+|++|++|++-.+
T Consensus 476 GQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 476 GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRP--SALASVDKILVLQDGRIAAF 552 (580)
T ss_pred hHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCH--HHHhhcceeeeecCChHHhc
Confidence 99999999999999999999999999999999999999999996 5699999999997 36788999999999999999
Q ss_pred cChhhHHHH
Q 038004 294 GPASMTEQL 302 (330)
Q Consensus 294 g~~~~~~~~ 302 (330)
|+.+++..-
T Consensus 553 G~r~eVLa~ 561 (580)
T COG4618 553 GPREEVLAK 561 (580)
T ss_pred CCHHHHHHH
Confidence 997765443
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.8e-40 Score=337.77 Aligned_cols=202 Identities=24% Similarity=0.377 Sum_probs=168.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+|+++||++.|. ++.+|+||||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.+ |...
T Consensus 317 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~--- 382 (635)
T PRK11147 317 KIVFEMENVNYQID-------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL--- 382 (635)
T ss_pred CceEEEeeeEEEEC-------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc---
Confidence 35799999999983 356999999999999999999999999999999999999874 699998 4322
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++|++|++ .+++.+||.|++.++.... ... .....+.++++.+++.. ..++. +.+|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999986 5889999999997753211 011 12345788999999963 44554 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-CCeEEEE-cC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-YGKTIYF-GP 295 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-~G~iv~~-g~ 295 (330)
|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||. .++..+||++++|+ +|+++.+ |.
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCC
Confidence 999999999999999999999999999999888765 35999999995 68889999999998 7998754 44
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=336.81 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=169.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|. ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~-------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~----- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYG-------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG----- 374 (638)
T ss_pred CceEEEEeeEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-----
Confidence 35799999999983 356999999999999999999999999999999999999874 799999742
Q ss_pred cCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..++|++|+. .+.+..|+.+++.. .. ......++.++|+.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2589999975 35666788776531 11 1123456889999999964 45554 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
+|||+|+.+|++|||||||++||+.++..+.+.|.++ .| |||+||||+ .++..+||++++|++|+++ +.|+.++
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 9999999999999999999999999999999999886 24 999999995 6889999999999999997 7888655
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 515 ~ 515 (638)
T PRK10636 515 Y 515 (638)
T ss_pred H
Confidence 4
No 339
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=277.62 Aligned_cols=194 Identities=30% Similarity=0.498 Sum_probs=170.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---L 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~ 141 (330)
++.++||+...+ ++-.|-||||+|.+||++.||||||||||||+..+.|.+.+....+|+++++++.+. .
T Consensus 2 ~l~l~nvsl~l~-------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa 74 (213)
T COG4136 2 MLCLKNVSLRLP-------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74 (213)
T ss_pred ceeeeeeeecCC-------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch
Confidence 578999997763 456899999999999999999999999999999999999876557899999999864 2
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+++|++|||+.+||+++|++||.|+... ..+...++..+..+|++.||....++ .|.+||||||-||++
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL 145 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVAL 145 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHH
Confidence 346899999999999999999999887542 33445677778999999999988776 367999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
-|+|+..|+.++||||+|.||...+.++.+......+..|...+.+|||. .++
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 99999999999999999999999999999999887778899999999994 444
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.3e-40 Score=303.64 Aligned_cols=198 Identities=25% Similarity=0.326 Sum_probs=162.6
Q ss_pred eEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-----------ECCEe
Q 038004 70 DLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-----------INGRK 138 (330)
Q Consensus 70 nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-----------~~g~~ 138 (330)
||+++|+. .+.+|+|+|+ +.+||+++|+||||||||||+++|+|+++|+ +|+|+ ++|++
T Consensus 5 ~~~~~y~~------~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYGP------NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred CcceeecC------cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCch
Confidence 57788731 2358999995 9999999999999999999999999999874 79996 77875
Q ss_pred cccc-------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 139 ETLA-------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 139 ~~~~-------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.... ...++|++|+..+++. ++.+++.+... ....++.+.++++.+||.+..++. +.+|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 4211 1137899999888884 88888866421 123346688999999998766553 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|+++||||||++||+..+..+.++|+++++ .+.|||++||++ ..+..+||++++|+ |+++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCC
Confidence 99999999999999999999999999999999999999999999975 489999999996 57888999999995 5565
Q ss_pred EEc
Q 038004 292 YFG 294 (330)
Q Consensus 292 ~~g 294 (330)
+.|
T Consensus 218 ~~~ 220 (255)
T cd03236 218 AYG 220 (255)
T ss_pred cce
Confidence 544
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=288.04 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~--- 142 (330)
+++.|+.+.|..+. ...+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.+ ++|+|.++|.+++..
T Consensus 2 i~~~~~~~~f~~g~--~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~Idg~dVtk~~~~ 76 (263)
T COG1101 2 ISLSNATKTFFKGT--PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQILIDGVDVTKKSVA 76 (263)
T ss_pred cccccceeeecCCC--hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc---CCceEEECceecccCCHH
Confidence 56778888874332 2357899999999999999999999999999999999999987 479999999987532
Q ss_pred --cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 143 --FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSR---SEKRERAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 143 --~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
...++-|||+|. .++.||+.||+..+.......+++. ...++...+.++.+ ||++.++++++ -|||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSG 151 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSG 151 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccc
Confidence 134677999995 7999999999988764322223332 23334455556665 56777777765 7999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||-+++++|-+..|++|+|||-|++|||.+...+++.-.++.++.+.|.++|||++ ..+..+.+|.++|++|+||.+
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999999999988999999999996 578899999999999999976
Q ss_pred c
Q 038004 294 G 294 (330)
Q Consensus 294 g 294 (330)
-
T Consensus 231 v 231 (263)
T COG1101 231 V 231 (263)
T ss_pred c
Confidence 4
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=333.77 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=162.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.| +++.+|+||||+|.+|+++||+||||||||||||+|+|+++|+ +|+|.++|..
T Consensus 1 ~i~i~nls~~~-------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR-------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe-------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------
Confidence 47899999999 3457999999999999999999999999999999999998874 7999998742
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh-----------------------hcC-CCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ-----------------------LQL-PDSMSRSEKRERAEMTIREMGLQ-DAM 199 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~ 199 (330)
.++|++|++..+. .|+.+++..... +.. .......+...++.++++.+||. +..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~ 143 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL 143 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh
Confidence 4889998654332 466554431100 000 00000112345788999999996 355
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
++. +.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||+ .++..+|
T Consensus 144 ~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~ 213 (638)
T PRK10636 144 ERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIV 213 (638)
T ss_pred cCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhc
Confidence 554 4699999999999999999999999999999999999999998888764 46999999995 6889999
Q ss_pred cEEEEEeCCeEE-EEcCh
Q 038004 280 HNLCLLAYGKTI-YFGPA 296 (330)
Q Consensus 280 d~v~vl~~G~iv-~~g~~ 296 (330)
|++++|++|+++ +.|..
T Consensus 214 d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred CEEEEEeCCEEEEecCCH
Confidence 999999999996 45654
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-39 Score=359.12 Aligned_cols=211 Identities=24% Similarity=0.276 Sum_probs=177.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|+|+++ .+|+|++||.++..
T Consensus 1217 ~I~f~nVs~~Y~~-----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred eEEEEEEEEEeCC-----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCH
Confidence 5999999999953 23579999999999999999999999999999999999985 26999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |+++||.... .. ..+++.++++.++|.+ .+++.+++ ....||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLS 1355 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLS 1355 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCC
Confidence 24679999999999987 9999994321 11 2345777888887743 34555553 334799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||..+...|.+.|++.. .++|||+|+|++. .+ ..||+|++|++|+|++
T Consensus 1356 gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~-ti-~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE-AL-LECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 3799999999963 44 5699999999999999
Q ss_pred EcChhhHH
Q 038004 293 FGPASMTE 300 (330)
Q Consensus 293 ~g~~~~~~ 300 (330)
.|++++..
T Consensus 1432 ~g~p~~Ll 1439 (1490)
T TIGR01271 1432 YDSIQKLL 1439 (1490)
T ss_pred eCCHHHHH
Confidence 99987653
No 344
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.4e-39 Score=286.76 Aligned_cols=220 Identities=21% Similarity=0.305 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEecCCc-----------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC
Q 038004 64 VFLTWKDLSVVVPSGK-----------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~-----------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~ 126 (330)
+.++++||++.|+... .....+.+|+||||++++||.+||||+||||||||+|+|+|.++|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt- 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT- 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-
Confidence 3688999999875321 0123467999999999999999999999999999999999999984
Q ss_pred CCccEEEECCEecccccCcEEEEeC-CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 127 EQTGEILINGRKETLAFGTSAYVTQ-EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 127 ~~~G~I~~~g~~~~~~~~~i~~v~Q-~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
+|+|.++|+- +++.. ...+.|.+|.+||+.+...+. +++.++.+++++++++.-+|.++.+.++
T Consensus 81 --~G~v~v~G~v--------~~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv-- 145 (249)
T COG1134 81 --SGKVKVTGKV--------APLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV-- 145 (249)
T ss_pred --CceEEEcceE--------ehhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch--
Confidence 7999999963 22222 234668899999998877654 4788999999999999999999998864
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+|-||+-|+++|.|...+|++||+||-.+.-|+.-++.-.+.+.++.+ .+.|+|++|||+ ..+.++||++++|
T Consensus 146 ---ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VSHd~-~~I~~~Cd~~i~l 220 (249)
T COG1134 146 ---KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDL-GAIKQYCDRAIWL 220 (249)
T ss_pred ---hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEECCH-HHHHHhcCeeEEE
Confidence 69999999999999999999999999999999999999999999999964 479999999995 6899999999999
Q ss_pred eCCeEEEEcChhhHHHHHH
Q 038004 286 AYGKTIYFGPASMTEQLFA 304 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~ 304 (330)
++|++...|.++++.+.+.
T Consensus 221 ~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 221 EHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred eCCEEEEcCCHHHHHHHHH
Confidence 9999999999988777664
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.9e-39 Score=274.07 Aligned_cols=144 Identities=28% Similarity=0.437 Sum_probs=131.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++|+++.|. +..+|+++||++++||+++|+|+||||||||+++|+|+++| .+|+|+++|+ ..
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~------~~ 64 (144)
T cd03221 1 IELENLSKTYG-------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST------VK 64 (144)
T ss_pred CEEEEEEEEEC-------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe------EE
Confidence 46899999983 23699999999999999999999999999999999999987 4799999985 35
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++| ||+||+||++|||||
T Consensus 65 i~~~~~-----------------------------------------------------------lS~G~~~rv~laral 85 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred EEEEcc-----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 889988 899999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+.+|+++||||||++||+.++..+.+.|+++ +.|+|++||++ ..+..+||++++|++|+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999876 36999999995 57888999999999985
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.9e-39 Score=332.60 Aligned_cols=203 Identities=22% Similarity=0.370 Sum_probs=164.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|+ +...+|+||||+|++|++++|+||||||||||+|+|+|+++|. +|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------
Confidence 5799999999994 1245899999999999999999999999999999999999874 699998753
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+++|++|++. +.+++.++..+......+ .. ..+++.++|+.++|.. ..++ ++.+|||||||||+||
T Consensus 572 ~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLA 639 (718)
T PLN03073 572 VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFA 639 (718)
T ss_pred eeEEEEecccc--ccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHH
Confidence 35999999863 345565654332211111 11 1356788999999974 3444 3579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
|||+.+|++|||||||++||+.++..+++.|.++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++
T Consensus 640 raL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 640 KITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999999999999999988887664 24 999999995 6889999999999999998 6777543
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.6e-39 Score=279.67 Aligned_cols=154 Identities=27% Similarity=0.376 Sum_probs=134.0
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEE
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY 148 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~ 148 (330)
.||++.| +++.+++++ |+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.. ++|
T Consensus 4 ~~l~~~~-------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~ 65 (177)
T cd03222 4 PDCVKRY-------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVY 65 (177)
T ss_pred CCeEEEE-------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEE
Confidence 5788887 345688885 999999999999999999999999999999874 6999999863 678
Q ss_pred EeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 149 v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
++|++. ||||||||++|||||+.+
T Consensus 66 ~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 66 KPQYID--------------------------------------------------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred EcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 887432 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE--cChh
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF--GPAS 297 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~--g~~~ 297 (330)
|+++||||||++||+..+..+.+.|.+++++.+.|||++||++ ..+..+||++++|+++-.++. |.+.
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999999998755358999999995 578889999999998766543 5543
No 348
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-38 Score=327.75 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=161.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+||||+|++|+++||+||||||||||||+|+|+++|+ +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSFS-------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEeC-------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------
Confidence 689999999993 356999999999999999999999999999999999999874 6999998731
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHH------------------------------hhcC-CCCCCHHHHHHHHHHHHHHc
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSA------------------------------QLQL-PDSMSRSEKRERAEMTIREM 193 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~v~~~l~~~ 193 (330)
.++|++|.+......++.+++..+. .+.. ...........++.++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 2677877654333346666542110 0000 00000112345788999999
Q ss_pred CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH
Q 038004 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273 (330)
Q Consensus 194 ~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~ 273 (330)
||.. ++ ++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+ .
T Consensus 147 gl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~-~ 214 (635)
T PRK11147 147 GLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDR-S 214 (635)
T ss_pred CCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCH-H
Confidence 9962 33 45799999999999999999999999999999999999999999999876 24999999995 6
Q ss_pred HHHHhccEEEEEeCCeEEE-EcChh
Q 038004 274 DVFELFHNLCLLAYGKTIY-FGPAS 297 (330)
Q Consensus 274 ~i~~~~d~v~vl~~G~iv~-~g~~~ 297 (330)
++..+||+|++|++|+++. .|+.+
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHH
Confidence 8889999999999999974 46643
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.9e-39 Score=330.55 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=161.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++||++.|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|+|.+++ ++
T Consensus 451 ~i~~~nv~~~~~~------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~ 515 (659)
T TIGR00954 451 GIKFENIPLVTPN------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KG 515 (659)
T ss_pred eEEEEeeEEECCC------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CC
Confidence 6999999999852 246999999999999999999999999999999999998763 69998864 34
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC----CCCCCCCCHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG----GWNVRGVSGGQKRRVS 220 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~----~~~~~~LSGGqrQRv~ 220 (330)
+++||+|++.+++. |++||+.++...... .......+++.++++.++|.+..++..+ ...+.+||||||||++
T Consensus 516 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 516 KLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA 592 (659)
T ss_pred cEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence 69999999998887 999999876421100 0011123457789999999776544211 0134689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|++||++. . .+.||++++|+.
T Consensus 593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~-~-~~~~d~il~l~~ 653 (659)
T TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS-L-WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH-H-HHhCCEEEEEeC
Confidence 99999999999999999999999999999888765 3899999999963 4 578999999973
No 350
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-39 Score=310.86 Aligned_cols=215 Identities=25% Similarity=0.411 Sum_probs=180.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|.. ++++|+||||++.+|+.+||+||||+||||+||+|..+..- .+|.|.+||+++..
T Consensus 537 ~i~fsnvtF~Y~p------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQ 607 (790)
T ss_pred eEEEEEeEEecCC------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHH
Confidence 5899999999953 46899999999999999999999999999999999999865 47999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH--HHH-HHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA--EMT-IREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v--~~~-l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.||.||||..||.. |+..||.|+.. .-+.++..+.+ ..+ -..+++++.+++++|++.. .||||||
T Consensus 608 ~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEK 680 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEK 680 (790)
T ss_pred HHHHHhcCcccCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcch
Confidence 24679999999999877 99999988642 12233332222 222 2346889999999998644 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||+++..|.+++|||.||+||..+.+.|...|.++++ ++|-|++.|.++ .+ -.+|.|+++++|+|++.|..
T Consensus 681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS-TI-VNADLILVISNGRIVERGRH 756 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh-he-ecccEEEEEeCCeEeecCcH
Confidence 999999999999999999999999999999999999999984 789999999964 33 46999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 757 eeL 759 (790)
T KOG0056|consen 757 EEL 759 (790)
T ss_pred HHH
Confidence 653
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.8e-38 Score=275.68 Aligned_cols=156 Identities=22% Similarity=0.303 Sum_probs=129.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
.+.+|+|+||+|++|++++|+||||||||||||+|.+ .+|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH------------
Confidence 3578999999999999999999999999999999963 259999988632222234677766
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTR--PKLLFLDEPTSG 240 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~--P~llllDEPtsg 240 (330)
.++++.++|... .++ ++.+||||||||++|||||+.+ |++|||||||++
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 235677787643 444 3579999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 241 LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||+..+..+.+.|+++++ .|.|||++||++ ..+ ..||++++|.+|+
T Consensus 120 LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~-~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 120 LHQQDINQLLEVIKGLID-LGNTVILIEHNL-DVL-SSADWIIDFGPGS 165 (176)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEECCCC
Confidence 999999999999999864 699999999996 455 6899999996644
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.3e-38 Score=348.23 Aligned_cols=204 Identities=27% Similarity=0.369 Sum_probs=169.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc-cEEEECCEeccccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT-GEILINGRKETLAF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~-G~I~~~g~~~~~~~ 143 (330)
.++++|+++.|+.. ..+.+|+|+||+|++||.++|+||||||||||+++|+|.+++ .+ |+|.+.
T Consensus 614 ~I~~~nvsf~y~~~----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~-------- 678 (1622)
T PLN03130 614 AISIKNGYFSWDSK----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIR-------- 678 (1622)
T ss_pred ceEEEeeEEEccCC----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEc--------
Confidence 59999999999532 135689999999999999999999999999999999999987 47 899864
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCCHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LSGGqr 216 (330)
++++||+|+|.++.. |++|||.|+.. .+ +++++++++..+|. +..++.+|++ ...||||||
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQK 746 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQK 746 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHH
Confidence 359999999999876 99999988642 11 34456666666553 3446677654 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||++|||||..+|+++|||||||+||+.+..++++ .+..+. .++|+|++||++ . ....||+|++|++|++++.|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l-~-~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL-H-FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH-h-HHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999988875 455543 379999999996 3 567799999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
.++.
T Consensus 823 ~~eL 826 (1622)
T PLN03130 823 YEEL 826 (1622)
T ss_pred HHHH
Confidence 7654
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-37 Score=346.20 Aligned_cols=205 Identities=25% Similarity=0.345 Sum_probs=167.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++|+++.|+.. ..+++|+|+||+|++||.++|+||||||||||+++|+|.++|. +|.+.. .++
T Consensus 614 ~I~~~~vsF~y~~~----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~~-------~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSK----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSVV-------IRG 679 (1495)
T ss_pred cEEEEeeEEEcCCC----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEEE-------ecC
Confidence 59999999999632 1356899999999999999999999999999999999999874 575531 235
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCCHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++||+|+|.++.. |++|||.|+.. .+ ++++.++++..+| ++..++.+|++ ...|||||||
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQ 747 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQ 747 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHH
Confidence 69999999999976 99999988642 12 2345555565554 34456677654 4579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|++||||+.++|+++|||||||+||+.+..++++. +.... .++|+|++||++. ....||+|++|++|++++.|+.
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCH
Confidence 99999999999999999999999999999988765 44442 4799999999963 4577999999999999999987
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 824 ~eL 826 (1495)
T PLN03232 824 AEL 826 (1495)
T ss_pred HHH
Confidence 654
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2e-37 Score=310.57 Aligned_cols=204 Identities=28% Similarity=0.412 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+|+++||++.| +.+.+++++||+|.+|+.+||||+||||||||||+|+|.+.|+ +|+|...+.
T Consensus 2 ~~i~~~~ls~~~-------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------ 65 (530)
T COG0488 2 SMITLENLSLAY-------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------ 65 (530)
T ss_pred ceEEEeeeEEee-------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------
Confidence 368999999998 3578999999999999999999999999999999999999874 699987642
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC--CC-------------------------CCHHHHHHHHHHHHHHcCCC
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP--DS-------------------------MSRSEKRERAEMTIREMGLQ 196 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~--~~-------------------------~~~~~~~~~v~~~l~~~~L~ 196 (330)
.+++|+.|++.+++..||.+.+..+..-... .. +..-+.+.++..++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 3599999999999999999988654321000 00 00011245778888889998
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 197 ~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.. ++. +.+||||||.||+||+||+.+|++|||||||++||..+...+-+.|+++ .| |+|+|||| ..++.
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd 214 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLD 214 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHH
Confidence 76 554 4699999999999999999999999999999999999999988888765 26 99999999 67999
Q ss_pred HhccEEEEEeCCeEEEEc
Q 038004 277 ELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 277 ~~~d~v~vl~~G~iv~~g 294 (330)
.+|++|+-++.|++..+.
T Consensus 215 ~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 215 NVATHILELDRGKLTPYK 232 (530)
T ss_pred HHhhheEEecCCceeEec
Confidence 999999999999986543
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.8e-37 Score=342.53 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=166.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------
Confidence 6999999999952 124699999999999999999999999999999999999987 479999987
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCCCCHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE--MTIREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~~~L-~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+++||+|++.+++ .||+||+.|+.. ...+...+.++ .+.+.+++ ++..++.++. .+.+||||||||++|
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaL 771 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSL 771 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHH
Confidence 4899999998875 599999987632 11221111111 12233332 2233344443 467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA-HEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|+++|||||||+||+.+...+++.+.+.. ...++|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 772 ARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~l-~~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 772 ARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SYL-PQVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hhh-hhCCEEEEecCCeEEeeCCHHHH
Confidence 999999999999999999999999999999987532 12479999999996 345 45999999999999999997654
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-37 Score=261.49 Aligned_cols=151 Identities=39% Similarity=0.596 Sum_probs=134.1
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----c
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----A 142 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~ 142 (330)
++|+++.|+ ++.+++++||+|++|++++|+|+||||||||+++|+|++++. +|+|+++|.+... .
T Consensus 2 ~~~~~~~~~-------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRYG-------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEeC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHH
Confidence 678999884 236999999999999999999999999999999999999874 7999999986532 1
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
...++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 234777777 899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|+|+.+|+++||||||++||+.++..+.+.|.++.+. +.|+|++||++ ..+..+||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998754 79999999995 57888899999999874
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2e-37 Score=329.26 Aligned_cols=221 Identities=28% Similarity=0.456 Sum_probs=197.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..+.++|+++.|... +.+++++||.|++||+.|++|+|||||||++|+|+|..+| ++|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecch------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCcccccc
Confidence 468899999999421 1199999999999999999999999999999999999987 47999999986532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.+||+||.+.+++.+|.+|++.+.++++ ++......+.++.+++.++|.+..++.+ +.+|||+|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 3456999999999999999999999998876 4566677788999999999999999875 589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|+++|.||+.+|++++|||||+|+||..++.+++++.++++ +|++||++||.+ ++...+|||+.+|.+|++...|+++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChH
Confidence 99999999999999999999999999999999999999985 566999999996 6899999999999999999999988
Q ss_pred hHHHHH
Q 038004 298 MTEQLF 303 (330)
Q Consensus 298 ~~~~~~ 303 (330)
+.+..|
T Consensus 784 ~LKsrf 789 (885)
T KOG0059|consen 784 ELKSRY 789 (885)
T ss_pred HHHhhc
Confidence 776555
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.4e-37 Score=315.87 Aligned_cols=180 Identities=27% Similarity=0.362 Sum_probs=150.6
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-----------ECCEeccc-------ccCcE
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-----------INGRKETL-------AFGTS 146 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-----------~~g~~~~~-------~~~~i 146 (330)
..+|++++ .+++||++||+||||||||||+|+|+|+++|+ +|+|. ++|+++.. ...++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 35899999 99999999999999999999999999999884 69997 88976421 11235
Q ss_pred EEEeCCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 147 AYVTQEDTLMTT---LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 147 ~~v~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
++.+|....+|. .||.|++.+. ..+.+++++++.++|.+..++. +.+|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----ISELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 555655443332 3999988531 1335688999999998777665 4699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
||+.+|++|||||||++||+..+..+.++|++++ + |.|||++|||+ ..+..+||++++|+++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999997 4 89999999996 5889999999999873
No 359
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-37 Score=323.49 Aligned_cols=241 Identities=37% Similarity=0.628 Sum_probs=219.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--cCcEEEEeCCCCCCCCCCHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--FGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~--~~~i~~v~Q~~~l~~~lTv~ 162 (330)
..+|+|+|+-+++|+++.++||.|||||||+++|+|-++.....+|+|.+||.+.... .+.++|+.|++.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 5799999999999999999999999999999999998876544578999999876432 45699999999999999999
Q ss_pred HHHHHHHhhcCCCC----CCHHHHH-HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 163 EAVYYSAQLQLPDS----MSRSEKR-ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 163 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
|.|.|+++++.+.. .++.+.. ...+.+++.+||.+++++.+|+...+.+|||||+||+||-+++.+++++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999998876532 2222222 256789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCCh
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPS 317 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~ 317 (330)
|.|||..+..+|++.|+++++..+.|++++.|++..+++.++|.|++|.+|+++++||.+++.++|+..|+.||....++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhc
Q 038004 318 DHYLRTIN 325 (330)
Q Consensus 318 ~~~~~~l~ 325 (330)
|+.++..+
T Consensus 368 DfLt~vts 375 (1391)
T KOG0065|consen 368 DFLTEVTS 375 (1391)
T ss_pred HHHHHhhc
Confidence 99988775
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.3e-36 Score=333.32 Aligned_cols=192 Identities=22% Similarity=0.381 Sum_probs=153.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46899999999999999999999999999999999999874 79999987 38999999999885 99999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAE--MTIREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~--~~l~~~~L-~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
|.|+... ......+.++ .+.+.+.. +....+.++. .+..|||||||||+|||||+.+|+++||||||++|
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9986421 1111111111 11222221 1222334443 35799999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 242 DSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 242 D~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|+.++..+++. +..+. .|+|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 580 D~~~~~~i~~~~l~~~~--~~~tvilvtH~~-~~~-~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM--SNKTRILVTSKL-EHL-KKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred CHHHHHHHHHHHHHHHh--cCCeEEEEeCCh-HHH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999985 66664 389999999996 345 46999999999999999997654
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3e-36 Score=313.32 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=153.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE--- 139 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~--- 139 (330)
...|+++||+++|. ++.+|+|+||+|.+|+++||||+|||||||||++|+|+.....+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y~-------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 175 IKDIHMENFSISVG-------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD 247 (718)
T ss_pred ceeEEEceEEEEeC-------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC
Confidence 34799999999993 34699999999999999999999999999999999996411112468887654321
Q ss_pred --cc-------c-------cCcEEEEeCCCCCCCCCCHHHH-----------------HHHHH-hhcCCCCCCHHHHHHH
Q 038004 140 --TL-------A-------FGTSAYVTQEDTLMTTLTVMEA-----------------VYYSA-QLQLPDSMSRSEKRER 185 (330)
Q Consensus 140 --~~-------~-------~~~i~~v~Q~~~l~~~lTv~e~-----------------l~~~~-~~~~~~~~~~~~~~~~ 185 (330)
+. . ...++|++|++.+... ++.++ +.... .+.. ........+
T Consensus 248 ~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~r 323 (718)
T PLN03073 248 DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDAYTAEAR 323 (718)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCcchHHHH
Confidence 00 0 0113455554332111 11111 10000 0000 011134556
Q ss_pred HHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE
Q 038004 186 AEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264 (330)
Q Consensus 186 v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 264 (330)
+..+|..+||.+ ..++ .+.+|||||||||+||+||+.+|++|||||||++||+.....+.+.|+++ +.||
T Consensus 324 ~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tv 394 (718)
T PLN03073 324 AASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTF 394 (718)
T ss_pred HHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEE
Confidence 778888888863 3343 35699999999999999999999999999999999999999999999775 6799
Q ss_pred EEEEcCchHHHHHhccEEEEEeCCeEE-EEcCh
Q 038004 265 VASIHQPSSDVFELFHNLCLLAYGKTI-YFGPA 296 (330)
Q Consensus 265 i~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~ 296 (330)
|++|||. ..+..+||++++|++|+++ +.|+.
T Consensus 395 iivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 395 IVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDY 426 (718)
T ss_pred EEEECCH-HHHHHhCCEEEEEECCEEEEeCCCH
Confidence 9999995 6888999999999999996 56664
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=289.06 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.+.+.++++.|. +.+++|+++||++++|+.+|++||||+||||++++|..++.+. +|.|.++|+++..
T Consensus 262 ~v~F~~V~F~y~------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq 332 (497)
T COG5265 262 AVAFINVSFAYD------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQ 332 (497)
T ss_pred eEEEEEEEeecc------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHH
Confidence 378999999994 3578999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHH-cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--IRE-MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~--l~~-~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++-||.||||..||.. |+..|+.|+.. ..+..+....++.+ -+. -.+++.+++.+|.++. .||||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggek 405 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEK 405 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchH
Confidence 23569999999999876 99999987643 12333332222211 111 2467788898887654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||+++.+|++|+|||.||+||..+.+.|...|++.+ .|.|-++|.|.++ .+ --+|.|+||++|+|+|.|..
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls-ti-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh-hc-cCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999997 4889999999964 44 35899999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 482 ~~ 483 (497)
T COG5265 482 EE 483 (497)
T ss_pred HH
Confidence 54
No 363
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-36 Score=258.37 Aligned_cols=186 Identities=27% Similarity=0.391 Sum_probs=157.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF- 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~- 143 (330)
.++.+||++.- +...++.++||++.+||++.|.||||||||||||+|+|+..|+ +|+|.++|.++....
T Consensus 2 ~L~a~~L~~~R-------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 2 MLEAENLSCER-------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71 (209)
T ss_pred cchhhhhhhcc-------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence 46778888763 4568999999999999999999999999999999999999985 699999998764322
Q ss_pred ---CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 144 ---GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 144 ---~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+-|+--.+.+=+.+|++|||.|...+... .....+.++++.|||....|.++ .+||-|||+||+
T Consensus 72 ~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvA 140 (209)
T COG4133 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVA 140 (209)
T ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHH
Confidence 2355676777888999999999998765432 12345888999999998888764 599999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|||-++..+++.||||||++||......+-.++..-+ ..|-.||++||++.
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~-~~GGiVllttHq~l 191 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Confidence 9999999999999999999999999888888888766 56889999999975
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.4e-35 Score=265.64 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=135.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHH-HHHHcCCCCCCCCccEEEEC-----------CE---e-c-ccccCcE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLL-DALAGRLSSNTEQTGEILIN-----------GR---K-E-TLAFGTS 146 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~G~I~~~-----------g~---~-~-~~~~~~i 146 (330)
...+|++|||+|++||++||+|+||||||||+ .+|.. .|++.+. |. + . .......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 46799999999999999999999999999995 44431 1222110 00 0 0 0001123
Q ss_pred EEEeCCC--CCCCCCCHHH---HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 038004 147 AYVTQED--TLMTTLTVME---AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 147 ~~v~Q~~--~l~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
++..|++ .+.|..+|.. ...+...+. ......++ .++++.++|.+. .++ ++.+|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 4444544 2455666653 221111111 11222233 568999999753 444 46799999999999
Q ss_pred HHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEE
Q 038004 221 ICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIY 292 (330)
Q Consensus 221 IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~ 292 (330)
|||||+.+| ++|||||||+|||+..+..+++.|+++++ .|.|+|++|||+ ..+ .+||++++| ++|+|++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEe
Confidence 999999998 59999999999999999999999999974 599999999996 455 689999999 9999998
Q ss_pred Ec
Q 038004 293 FG 294 (330)
Q Consensus 293 ~g 294 (330)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-36 Score=253.48 Aligned_cols=211 Identities=23% Similarity=0.320 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe--cc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK--ET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~--~~-- 140 (330)
.|.++||+++|.-.....-.-++|+||||+++.||+++|=||||||||||||+|-|.+.|+ +|+|++.-.. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 5889999999842111112357999999999999999999999999999999999999874 6999986532 11
Q ss_pred ---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 ---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+++.+|||.|--...|+.+..|.++.++.-+ +...+..+.++..+|.++++++.+-.. .|..+
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 12346999999888889999989888776432 467788889999999999998766554 36799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
||||+|||.|||.++.+-+||+|||||+.||...+..++++|.+-. ..|.++|=|-|| ++.-...|||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999864 679999999999 6677789999988764
No 366
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.1e-35 Score=323.78 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=149.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
++.+|+||||+|++|++++|+||||||||||+++|+|+++| .+|+|.+. +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~---~~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI---SEGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 45699999999999999999999999999999999999987 46999874 35999999998875 69999
Q ss_pred HHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 164 AVYYSAQLQLPDSMSRSEKR-----ERAEMTIREM--GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
|+.|+... ...... ..+++.++.+ |+.. .++. .+.+|||||||||+|||||+.+|++|||||
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t----~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQLGGGLET----EIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchH----HhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99875311 111111 1122233333 3432 2222 356999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++||+.++..+++.+..... .|+|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~~-~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HVV-PRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999988875432222 389999999996 344 67999999999999999997654
No 367
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-35 Score=257.88 Aligned_cols=246 Identities=19% Similarity=0.284 Sum_probs=193.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEec---c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKE---T 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~---~ 140 (330)
+|.++||++.+.++. +...++++||+++..||+-|+||+||||||-.+|+|+|..+.+- .+....+|++.++ .
T Consensus 3 LLDIrnL~IE~~Tsq---G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKTSQ---GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEecCC---CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 678999999986543 56789999999999999999999999999999999999986531 1223344555432 1
Q ss_pred --cc----cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCC-C--CHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 --LA----FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDS-M--SRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 --~~----~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~-~--~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.+ .+.|+++||+|. |.|.-+|...|.-........+ + .-.-.++++-++|.++|+.+..| +...||.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcc
Confidence 11 135889999995 7787777766643322111111 0 00123567889999999987644 5556899
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|.-||.|+|.||.|++..|++||.||||+++|+.++.+|+.+|.++.+..|.||++++||+ ..+.+.||++-||+-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecc
Confidence 99999999999999999999999999999999999999999999999878899999999995 68999999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhc---cccc
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN---KDFE 329 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~---~~~~ 329 (330)
-++.++. +++. +.|.|+|++.|= +||.
T Consensus 237 ~~ESa~~---e~l~----------~~PhHPYTqALi~a~PDF~ 266 (330)
T COG4170 237 TVESAPS---EELV----------TMPHHPYTQALIRAIPDFG 266 (330)
T ss_pred cccccch---hHHh----------cCCCCchHHHHHHhCcccc
Confidence 9999984 4455 489999998873 5553
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-34 Score=308.97 Aligned_cols=245 Identities=22% Similarity=0.295 Sum_probs=187.5
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccccCCCCceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCC
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSG 108 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nG 108 (330)
-.|.|++..|+.-... .|.......+...=+.. =.++++|++++|.. +...+|+||||+|++||-+||||..|
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~-G~I~f~~~~~RYrp-----~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESRPPPSWPSK-GEIEFEDLSLRYRP-----NLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCC-CeEEEEEeEEEeCC-----CCcchhcCceEEEcCCceEEEeCCCC
Confidence 4567888888875444 22211111111100111 15999999999953 23579999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH
Q 038004 109 CGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR 183 (330)
Q Consensus 109 sGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 183 (330)
||||||+++|..+..| .+|+|.+||.++.. .+++++.+||||.+|.. |++.||-=. ...+.
T Consensus 1177 aGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD---- 1242 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSD---- 1242 (1381)
T ss_pred CCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cccCH----
Confidence 9999999999999987 36999999998642 24689999999999998 999998311 11222
Q ss_pred HHHHHHHHHcCCCc-------ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 184 ERAEMTIREMGLQD-------AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 184 ~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
+.+-++|+.++|.+ .++..+.+ ...++|-||||.+||||||+++.+||+|||+|+++|+.+-..|.+.|++-
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 33455555555433 34444432 34589999999999999999999999999999999999999999999886
Q ss_pred HhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 257 ~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
- .++|||.|.|.+. .+. -||||+||++|+++|+|+|.+.
T Consensus 1322 F--~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1322 F--KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred h--cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHH
Confidence 4 3799999999975 444 4999999999999999998653
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-33 Score=299.99 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=173.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
...++++|.++++... .....|+||||+|++|+.+||+|+-|||||+|+.+|+|.++. .+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs----- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS----- 583 (1381)
T ss_pred CceEEEeeeeEecCCC----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe-----
Confidence 4569999999997431 234489999999999999999999999999999999999976 5799999985
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LSGGq 215 (330)
++||+|.|.++.. ||+|||.|+..+ .+++.+++++...|.+. -.+.+|++. -+|||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhH
Confidence 8999999999876 999999998643 23556666666665433 235556543 4899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++||||+.++.++++||.|+|++|..+..+|++..-... -+++|+|++||++ .....||.|++|++|+|++.|+
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccC
Confidence 999999999999999999999999999999999887665433 3489999999985 4667899999999999999999
Q ss_pred hhhHH
Q 038004 296 ASMTE 300 (330)
Q Consensus 296 ~~~~~ 300 (330)
.++..
T Consensus 726 y~el~ 730 (1381)
T KOG0054|consen 726 YEELL 730 (1381)
T ss_pred HHHHH
Confidence 77654
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=7.6e-34 Score=237.18 Aligned_cols=132 Identities=45% Similarity=0.746 Sum_probs=115.7
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
|+||||+|++|++++|+|+||||||||+++|+|+.++ .+|+|.++|.++.. ....++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999987 47999999998643 235699999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
++ ...+++.++++.+++.+..++.+.. .+.+||||||||++|||||+.+|++|||||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98 1235588899999988776666532 447999999999999999999999999999996
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=276.47 Aligned_cols=199 Identities=26% Similarity=0.377 Sum_probs=166.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-----
Confidence 45899999999994 2367999999999999999999999999999999999998774 799987532
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
-++||+.|+. .+.+..|+.|++.-... ...+..+..+|..+++....-.. .+..||||||-|+.+
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~----~v~~LSGGEk~Rl~L 450 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEK----PVGVLSGGEKARLLL 450 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhC----chhhcCHhHHHHHHH
Confidence 3599999987 45588899998854321 11156788999999997543322 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE-cC
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF-GP 295 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~-g~ 295 (330)
|+.++.+|.+|||||||+.||..+...+-+.|..+ .-|||+|||| ..++..+|++++++.+ ++..+ |.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCC
Confidence 99999999999999999999999999988888766 3599999999 5799999999999998 66554 65
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.2e-32 Score=252.95 Aligned_cols=195 Identities=24% Similarity=0.316 Sum_probs=147.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-----cCCC-----CC--------CCCccEEEECCEecccc-cC-
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-----GRLS-----SN--------TEQTGEILINGRKETLA-FG- 144 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-----Gl~~-----~~--------~~~~G~I~~~g~~~~~~-~~- 144 (330)
..-|+|||++|+.|++++|.|.||||||||++.+. ..+. +. ....--|.++..++... +.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999999662 1100 10 00011356665543110 00
Q ss_pred -----------------------------cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 038004 145 -----------------------------TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 145 -----------------------------~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L 195 (330)
.+.|..++...+..|||.|++.|...+. ...++.++|+.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1334444445567899999998765431 12457789999999
Q ss_pred Cc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 196 QD-AMDTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 196 ~~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.. .+++ .+.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+++.|+++. +.|.|||++||++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~ 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNL 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 76 3444 3569999999999999999996 79999999999999999999999999997 4589999999996
Q ss_pred hHHHHHhccEEEEE------eCCeEEEEcCh
Q 038004 272 SSDVFELFHNLCLL------AYGKTIYFGPA 296 (330)
Q Consensus 272 ~~~i~~~~d~v~vl------~~G~iv~~g~~ 296 (330)
..+ ..||++++| ++|++++.|++
T Consensus 233 -~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 -DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 455 579999999 89999999863
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=1.8e-32 Score=244.15 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=130.1
Q ss_pred E-EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC------CCCccEEEECCEeccc--ccCcEEEEeCCCCCCCC
Q 038004 88 L-QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN------TEQTGEILINGRKETL--AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 88 L-~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~------~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~ 158 (330)
+ +++++++.+| +++|+||||||||||+++|+|++.+. ....|++.+.|++... ...+++||||++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 5 7789999999 99999999999999999999997542 1123567777765421 235799999999765
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEE
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL----TRPKLLFL 234 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~----~~P~llll 234 (330)
|.. . ..+++.++++. .+..++ .+.+||||||||++||++|+ .+|+++||
T Consensus 89 --------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 110 0 02356666666 333333 35799999999999999997 46799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
||||++||+..+..+++.|++++ + +.|||++||++ ..+ ..||+++.|..
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~-~-~~tiIiitH~~-~~~-~~~d~v~~~~~ 190 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFS-K-ETQFIVITHRK-GTM-EAADRLYGVTM 190 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-c-CCEEEEEECCH-HHH-hhcceEEEEEe
Confidence 99999999999999999999986 3 68999999996 344 68999999875
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-31 Score=262.87 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=178.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.++++|++.. ..++||||++++|||+||.|-=|||+|-|+++|.|..++ .+|+|.++|++....
T Consensus 261 ~~~l~v~~l~~~-----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG-----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC-----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCC
Confidence 567889988743 158999999999999999999999999999999997765 479999999976422
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP-D-SMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRG 210 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~ 210 (330)
...++||+.|- -++..++|.+|+.++...+.. . .++....++.++++.+.+++... .+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 23599999874 489999999999887221211 1 24556667788999999998533 233 3569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||.||||.|||.|..+|++|||||||.|+|.-...+|.++++++++ +|++||++|-++ .++..+||||+||++|++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSEl-pEll~~~DRIlVm~~Gri 479 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSEL-PELLGLSDRILVMREGRI 479 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCCh-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999985 599999999996 589999999999999999
Q ss_pred EEEcCh
Q 038004 291 IYFGPA 296 (330)
Q Consensus 291 v~~g~~ 296 (330)
+..-+.
T Consensus 480 ~~e~~~ 485 (500)
T COG1129 480 VGELDR 485 (500)
T ss_pred EEEecc
Confidence 875443
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.4e-32 Score=231.90 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=170.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
++.++||.+.- -|-.+|..+..||++-+|||||||||||+-.++|+++. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t-----------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAEST-----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeeccccccc-----------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhH
Confidence 56788887663 26778999999999999999999999999999999875 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..++-+|+.|+..-..-|.|++++.+ +.+ .++....+.++...++|.+.+.+. +++|||||-|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L----~qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTL----HQP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhh----cCc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 12345788887665556789998854 222 345566788889999998887764 579999999999
Q ss_pred HHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILT-------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~-------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
-+|...+. ..++||||||.++||...+..+-.+|.+++. .|.+||+++||+. .-.+.+|++.+++.|+++.
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchh-hHHHHHHHHHHHhcCeEEe
Confidence 99988764 3469999999999999999999999999984 6999999999964 6778899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|..+++
T Consensus 213 ~G~~~eV 219 (248)
T COG4138 213 SGRREEV 219 (248)
T ss_pred ecchhhh
Confidence 9997765
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=6.8e-31 Score=242.14 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=137.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE-ec-c------cccCcEEEEeCCC---------CCCCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-KE-T------LAFGTSAYVTQED---------TLMTTLT 160 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~-~~-~------~~~~~i~~v~Q~~---------~l~~~lT 160 (330)
..+++|+||||||||||+++|++++.+. ..|++++.|. ++ . .....+++++|++ .++|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998753 2367777765 21 1 1123689999985 3567889
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------ccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT---------------RIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~---------------~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
|.+++.++....... .......+++.++|+.++|...... ...+.++.+||||||||++|||||
T Consensus 103 V~r~I~~~~~~~~~i-n~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLI-NGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEE-CCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998886543221100 0122345788899999998611000 112235679999999999999999
Q ss_pred h----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 226 L----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 226 ~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+ .+|+++|+||||++||+..+..+++.|+++. + |.++|++||+. .+...||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 3 88999999993 5677899998875
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=2.3e-30 Score=236.91 Aligned_cols=185 Identities=17% Similarity=0.266 Sum_probs=128.0
Q ss_pred CCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC----------------CCCCCCcc--------EEEECCE
Q 038004 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL----------------SSNTEQTG--------EILINGR 137 (330)
Q Consensus 82 ~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~----------------~~~~~~~G--------~I~~~g~ 137 (330)
|++..++++++ |++++|+||||||||||+++|++++ .+. +| +|.+++.
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcC
Confidence 44567888886 7899999999999999999998443 221 23 5555542
Q ss_pred ec--c------cccCcEEEEeCCCCCCC-CCCHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 138 KE--T------LAFGTSAYVTQEDTLMT-TLTVMEAVYYSAQLQLPDSMSR-SEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 138 ~~--~------~~~~~i~~v~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
+. . ...+.++|++|+..+++ .+|..|...+...+........ .....+ +.+.+++.+..+. .
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~-----~ 155 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQ-----E 155 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhccccccc-----c
Confidence 11 0 01234788888777776 4577665554443321110000 000112 2333444433333 3
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 208 VRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+.+||||||||++|||||+. +|+++|+||||++||+..+..+++.|++++ + +.++|+++|++ .+..+||+++
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~--~~~~~~d~i~ 231 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP--ELLEVADKFY 231 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH--HHHhhCCEEE
Confidence 56999999999999999973 589999999999999999999999999986 3 78889888884 5778999999
Q ss_pred EEe
Q 038004 284 LLA 286 (330)
Q Consensus 284 vl~ 286 (330)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 985
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1e-31 Score=241.90 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=132.3
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cccCcEEEEeCCCCCCCCCCH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LAFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~~~~i~~v~Q~~~l~~~lTv 161 (330)
+...+++++++ ++++|+||||||||||+++|.-.. | .+.. ...+++++++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------G------~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------G------FRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------c------cCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 45678999988 899999999999999999997321 2 1111 112458888888888888888
Q ss_pred HHHHHHHHhhcC-----CCCCCHHHHHH--HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc----CCC
Q 038004 162 MEAVYYSAQLQL-----PDSMSRSEKRE--RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT----RPK 230 (330)
Q Consensus 162 ~e~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~----~P~ 230 (330)
.+++.+...... ..+........ ...++++.++|++..+++ +..||+|||||++||+|++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 887755432210 00111111010 124566777887666654 46899999999999999974 589
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 231 LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 231 llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
++||||||+|||+..+..+++.|++++ + +.++|++||++ .+..+||++++|+.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999985 3 67899999994 57899999999974
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=8.7e-30 Score=229.29 Aligned_cols=191 Identities=18% Similarity=0.129 Sum_probs=130.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEe-CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE-e-c--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVE-PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-K-E-- 139 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~-~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~-~-~-- 139 (330)
.|+++|+. .|. .. .+|+|... +|++++|+||||||||||+++|++.+... ..+....+.. . +
T Consensus 5 ~i~l~nf~-~y~-------~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PFR-------EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-CcC-------Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcC
Confidence 36777776 442 12 55667644 58999999999999999999999654211 1233332210 0 1
Q ss_pred ccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 140 ~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
......++++||++.... ++.... .++..+..+.+ .+...++.+..++ ++.+|||||+||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHH
Confidence 112245899999874211 111110 12222222111 2333444444444 4579999999999
Q ss_pred HHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 220 SICIEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 220 ~IAraL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||+. +|+++||||||++||+.....+.+.|+++++ .+.|||++||++ ..+..+||++++|++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 99999985 6789999999999999999999999999964 489999999996 57889999999999874
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=237.09 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=186.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~ 141 (330)
.++|+++||++.-. .+...+++|||+|+.|||+||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKDR------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeecC------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEecccc
Confidence 57899999998842 2356899999999999999999999999999999999998763 59999999985 11
Q ss_pred ------ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 142 ------AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQ----LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 142 ------~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
....++|||.|. .+.+.+|+.||+.+..... ...........+.+.++++++++...-.. ...
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cch
Confidence 123589999986 3889999999997764321 11125667788889999999998632211 135
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
..||||++||+-+||.|..+|++||+-+||.|||......|.+.|.+.+ +.|++|+++|-|+ +++..+||||.||++|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dL-DEil~lsDrIaVi~~G 479 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDL-DEILELSDRIAVIYEG 479 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhH-HHHHHhhheeeeeeCC
Confidence 6999999999999999999999999999999999999999999999997 5699999999995 6899999999999999
Q ss_pred eEEEEcChhh
Q 038004 289 KTIYFGPASM 298 (330)
Q Consensus 289 ~iv~~g~~~~ 298 (330)
+++...++++
T Consensus 480 ri~~~~~~~~ 489 (501)
T COG3845 480 RIVGIVPPEE 489 (501)
T ss_pred ceeccccccc
Confidence 9998887653
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=2.5e-28 Score=268.72 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=154.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHH---------HHHcCCCCCC---------
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLD---------ALAGRLSSNT--------- 126 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~---------~l~Gl~~~~~--------- 126 (330)
.|++++++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+..
T Consensus 600 ~L~l~~~~~------------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~ 667 (1809)
T PRK00635 600 TLTLSKATK------------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISR 667 (1809)
T ss_pred eEEEecccc------------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccce
Confidence 678887752 2599999999999999999999999999999 5555432200
Q ss_pred ------------CCccEEEECCE--ecc---------c--ccCcEEEEeCC------------------C----------
Q 038004 127 ------------EQTGEILINGR--KET---------L--AFGTSAYVTQE------------------D---------- 153 (330)
Q Consensus 127 ------------~~~G~I~~~g~--~~~---------~--~~~~i~~v~Q~------------------~---------- 153 (330)
+-++.++|-|. ++. . ......|.|+. +
T Consensus 668 vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~ 747 (1809)
T PRK00635 668 LVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCL 747 (1809)
T ss_pred eEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccC
Confidence 01122332221 000 0 00011122221 0
Q ss_pred ----------CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHH
Q 038004 154 ----------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 154 ----------~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..+..+||.|+|.+...-.........+..+++ ++|+.+||... +++. +.+|||||+||++||
T Consensus 748 GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 748 GKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLA 821 (1809)
T ss_pred CcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHH
Confidence 145678999999876542110012234455666 58899999765 4553 569999999999999
Q ss_pred HHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCeEEEE
Q 038004 223 IEIL---TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGKTIYF 293 (330)
Q Consensus 223 raL~---~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~iv~~ 293 (330)
+||+ .+|++|||||||+|||+..+..++++|+++++ .|.|||++||++ ..+ .+||++++|. +|++++.
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEe
Confidence 9998 69999999999999999999999999999974 599999999996 466 8999999996 7999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 899 Gtpeel 904 (1809)
T PRK00635 899 CSPEEL 904 (1809)
T ss_pred CCHHHH
Confidence 998764
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.96 E-value=6.2e-29 Score=222.54 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=122.7
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHH----cCCCCCCCCccEEEECCEec--ccccCcEEEEeCCC-----CCCCCC
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALA----GRLSSNTEQTGEILINGRKE--TLAFGTSAYVTQED-----TLMTTL 159 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~----Gl~~~~~~~~G~I~~~g~~~--~~~~~~i~~v~Q~~-----~l~~~l 159 (330)
.++++.+| +++|+||||||||||+++|. |...+. .|.+..+.+.. ......++++||++ .+...+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 877653 35554111111 11234689999987 345566
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH------HHHHHHHhcCCCEEE
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR------VSICIEILTRPKLLF 233 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR------v~IAraL~~~P~lll 233 (330)
|+.+++.+.. . ..+++.+ ++ .+..||+||+|| ++|||||+.+|+++|
T Consensus 92 ~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888885421 1 1122233 22 356999999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 234 LDEPTSGLDSAASY-HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 234 lDEPtsgLD~~~~~-~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+||||++||+..+. .+.++|++++++.|.+||++||++ .. ...||++++|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~~-~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-EL-VDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-HH-HhhCCEEEEEee
Confidence 99999999999999 999999999754488999999995 34 467999999864
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=244.41 Aligned_cols=197 Identities=28% Similarity=0.394 Sum_probs=158.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
...++++||++.-|. +...|++.+|.|++||.+.|.||||||||||+|+|+|+-+.. +|+|.+- .
T Consensus 390 ~~~i~~~nl~l~~p~------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~ 454 (604)
T COG4178 390 DHGITLENLSLRTPD------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------A 454 (604)
T ss_pred cceeEEeeeeEECCC------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------C
Confidence 357999999999864 247899999999999999999999999999999999998763 5777653 1
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC-CCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG-GWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-~~~~~~LSGGqrQRv~I 221 (330)
...+-|+||.|.+... |.+|.|.|+.... .. ..+.+.++|.++||.+..++.-. ++.-+.||+|||||+++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2357899999998877 9999998764321 12 23557888999999865443111 11335899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||.|+++|++++|||.|++||+.++..++++|++-. .+.|||.|.|.. .+..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999999998754 479999999994 4677777655554
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=1.4e-27 Score=252.93 Aligned_cols=123 Identities=26% Similarity=0.365 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP---KLLFL 234 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P---~llll 234 (330)
|||.|++.|...+. . ..+..+.|+.+||... +++. +.+|||||+||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 68888887764321 1 1234678999999753 4443 4699999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
||||+|||+..+..++++|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|++++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999999999999999999997 4589999999996 455 579999999 7899999999654
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=237.12 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=162.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++|+.+.|+.. . -=+..||++|++||++-|+|.||||||||+++|+|++.|. +|+|++||+++...
T Consensus 322 ~lelrnvrfay~~~-----~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDN-----A-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcc-----c-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCH
Confidence 58999999999632 1 2488999999999999999999999999999999999984 79999999986421
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
++-++-||-|..+|+.+-. +... ...+.++..|+++.|.+...-.-++-.+-.||.|||+|+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 1224446666666654211 1111 123557777888777654322222223568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
++..||+-+-+|+++||=-+.-||.-++.+.+.+.-+-++.|+||+.|||| + .-+..+||++.|.+|++++..+
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD-d-~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD-D-HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC-c-hhhhhHHHHHHHhcCceeeccc
Confidence 999999999999999999999999999999999888878899999999999 3 5788999999999999998765
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=6.1e-28 Score=235.68 Aligned_cols=213 Identities=23% Similarity=0.302 Sum_probs=148.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-cc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~ 143 (330)
-+.++|+++.|+ ++.+++|+.|++.+|+-+||+|+|||||||+|++|.|...|..+.-+ ++...+.... ..
T Consensus 75 dvk~~sls~s~~-------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFH-------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEK 146 (614)
T ss_pred cceeeeeeeccC-------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchH
Confidence 589999999984 46799999999999999999999999999999999999887422112 2222222110 01
Q ss_pred CcEEEEeCCC--------------CCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 038004 144 GTSAYVTQED--------------TLM-TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWN 207 (330)
Q Consensus 144 ~~i~~v~Q~~--------------~l~-~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~ 207 (330)
..+.++++.. ... +. --.+.+.... .+ ...+..+....++..+|..+|... ..+++
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~~~-~r-~~~~d~~~~~~k~~~il~glgf~~~m~~k~----- 218 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDD-KEKDELDELY-ER-LDEMDNDTFEAKAAKILHGLGFLSEMQDKK----- 218 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccc-hhhhHHHHHH-HH-HHhhCchhHHHHHHHHHHhcCCCHhHHHHH-----
Confidence 1111222100 000 00 0000000000 00 011334455666777888887654 34444
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+||||+|.|++|||+|..+|++|+|||||++||+.+...+-+.|.++- . + ++++++|.. +.+-.+|.+|+-|++
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-R-I-ILVIVSHSQ-DFLNGVCTNIIHLDN 294 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-C-c-eEEEEecch-hhhhhHhhhhheecc
Confidence 46999999999999999999999999999999999999998888887763 1 2 899999995 689999999999999
Q ss_pred Ce-EEEEcChh
Q 038004 288 GK-TIYFGPAS 297 (330)
Q Consensus 288 G~-iv~~g~~~ 297 (330)
++ +.|.|+-+
T Consensus 295 kkl~~y~Gnyd 305 (614)
T KOG0927|consen 295 KKLIYYEGNYD 305 (614)
T ss_pred cceeeecCCHH
Confidence 99 45667643
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.2e-26 Score=242.18 Aligned_cols=124 Identities=24% Similarity=0.326 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILT---RPKLLF 233 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~---~P~lll 233 (330)
.|||.|.+.|...+. . ..+..++|+.+||... +++. +.+|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 356777766654321 0 1234578899999753 4443 46999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
|||||+|||+..+..++++|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~-~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 999999999999999999999997 4599999999996 455 579999999 7999999998654
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=1.6e-27 Score=232.71 Aligned_cols=201 Identities=22% Similarity=0.278 Sum_probs=159.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+++-+.|+++.|.. +-.++++++|-|..++.+++|||||||||||||+++|.+.| +.|.|.-.-.
T Consensus 387 ~pvi~~~nv~F~y~~------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p---~~G~vs~~~H----- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP---TIGMVSRHSH----- 452 (614)
T ss_pred CCeEEEeccccCCCC------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc---cccccccccc-----
Confidence 468999999999952 22689999999999999999999999999999999999988 4687754322
Q ss_pred cCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+++.-|+. .+.-..++.|++.-.. ......+.+..+|.++||....... ...+||+|||.||.
T Consensus 453 -~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 453 -NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVL 519 (614)
T ss_pred -ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHH
Confidence 2344555653 3444567777664321 1123456688899999998655443 35799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGP 295 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~ 295 (330)
+|+.++..|.+|||||||+|||..+...+-+.|.++ .-+||++|||. ..+.++++++.+..+|.+. ..|.
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechh-hHHHHHHHHhHhhccCceeecCcc
Confidence 999999999999999999999999998888888765 35899999995 5899999999999998875 4565
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=220.88 Aligned_cols=190 Identities=22% Similarity=0.308 Sum_probs=152.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..+++.++++.|. +. -|.-=..+|..||+++++||||-||||+.++|+|.++|+ +|. ..+
T Consensus 341 ~lv~y~~~~k~~g-------~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~----- 400 (591)
T COG1245 341 TLVEYPDLKKTYG-------DF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED----- 400 (591)
T ss_pred eeeecchheeecC-------ce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----
Confidence 4567777777762 22 366667788899999999999999999999999999985 575 111
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
-+++|-||.-.-....||.+.|.-........ .-...++++-+.|++.+++.+ .+|||||.|||+||.
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa 468 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAA 468 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHH
Confidence 24778888755556679999886544321111 122356778888888888765 599999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||.++.++++||||++.||+..+..+-+.++++..+.++|.+++.||+ ..+.-++||++|..
T Consensus 469 ~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 469 ALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999999988899999999996 47777899999886
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=3.6e-26 Score=203.79 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=122.5
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec------ccccCcEEEEeCCCCCCCCCC
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE------TLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~------~~~~~~i~~v~Q~~~l~~~lT 160 (330)
-++++++++.+| +.+|+||||||||||+.+|...+.... . ....|... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 357788888888 889999999999999999985432210 0 11112210 0112347888888766551
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEeC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI----LTRPKLLFLDE 236 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL----~~~P~llllDE 236 (330)
.. . ......+.++++. .+..++ ++++||+|||||++||+|| +.+|+++||||
T Consensus 84 ---------~~------~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 ---------PL------C-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---------cC------C-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 00 0 1123456677766 333343 4679999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc--CCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHE--DGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~--~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||++||+..+..+.+.|+++.++ .+.+||++||++ ..+.. +|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 99999999999999999998644 246899999996 45655 49999998754
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.4e-27 Score=226.57 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=145.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
--|...+++..| +.+.+|.+-++++..|..+||+|+||+|||||||+|+. |+|.....+....
T Consensus 79 ~Di~~~~fdLa~-------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~~- 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEVR- 141 (582)
T ss_pred cceeeeeeeeee-------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhee-
Confidence 357888888888 46789999999999999999999999999999999985 3343332211100
Q ss_pred CcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 144 GTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 144 ~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
-.++.-. ..+...+.+.+.+.....+.. .....+....+|..+|..+.+... .+++||||.|.|++||
T Consensus 142 --g~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 142 --GDDTEALQSVLESDTERLDFLAEEKELLA-----GLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALA 210 (582)
T ss_pred --ccchHHHhhhhhccHHHHHHHHhhhhhhc-----cchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHH
Confidence 0122211 123344444444432221110 102233344489999998766543 4679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE-EEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT-IYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i-v~~g~~ 296 (330)
|||..+|+||||||||+.||......+-+.|..+ +.|+|+|||| ..++-.+|..|+.+++-++ .|.|.-
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 9999999999999999999999988877777654 5899999999 6799999999999888776 355653
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=4.1e-26 Score=209.93 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=117.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-c---cc------ccCcEEEEe--CCCCC-CCCCCHHHHH
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-E---TL------AFGTSAYVT--QEDTL-MTTLTVMEAV 165 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~---~~------~~~~i~~v~--Q~~~l-~~~lTv~e~l 165 (330)
.+++|+||||||||||+.+|++++.+. .|++...+.. . .. ....+..+| |++.. ....++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999988642 3655543311 0 00 011233344 43321 1111111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc---------cccCC--------CCCCCCCHHHHHHHHHHHHHhcC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD---------TRIGG--------WNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~---------~~~~~--------~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
. .++.. . .....+.++++++.+|+..... ..+.+ ..+.+||||||||++||++++.+
T Consensus 100 ~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 00111 1 1122345678888898853211 11111 12379999999999999999865
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 229 ----PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 229 ----P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|+++||||||++||+..+..+.+.|+++++ .|.+||++||++ .+...||++++|+.
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 999999999999999999999999999974 489999999994 45688999999874
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=1e-24 Score=214.48 Aligned_cols=204 Identities=23% Similarity=0.341 Sum_probs=159.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.+++++|++.-|+. +..+++|+||+|+.|+.+.|.||||||||+|+|+|+|+-+. .+|+|..-....
T Consensus 431 Dn~i~~e~v~l~tPt~-----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~--- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG--- 499 (659)
T ss_pred cceEEeeeeeecCCCC-----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---
Confidence 3689999999997642 45688999999999999999999999999999999999874 469887644321
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-------CCCCCCHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW-------NVRGVSGGQ 215 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~-------~~~~LSGGq 215 (330)
.+.+-||||.|.+--. |.+|.+.|+..-... ..+....+++.+.|+.++|.+...+ .++. +...||+||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 1458899999987666 999999887432111 1222234567777888777665433 2221 234799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+||++.||.+.++|++-||||-||++|......+.+.++ +.|.|.|-|+|.. .+.++=|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999998888776654 4589999999995 47788888888875
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6.1e-25 Score=210.06 Aligned_cols=212 Identities=27% Similarity=0.336 Sum_probs=162.1
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
+.|+|-++||+|.|+ +.++++++++|-|.-...+|||||||.||||||++|.|-+.|. .|+.+-+-
T Consensus 583 ~PPvLGlH~VtFgy~------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh----- 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH----- 648 (807)
T ss_pred CCCeeecccccccCC------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc-----
Confidence 467899999999996 3567899999999999999999999999999999999999874 47665432
Q ss_pred ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 ~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
+-+|||.-|+. .|...-|..|+|.-...+ + .+.+...|-.+||...+++. .+..|||||+-||
T Consensus 649 -rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------p----yq~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRV 713 (807)
T KOG0066|consen 649 -RLRIGWFDQHANEALNGEETPVEYLQRKFNL------P----YQEARKQLGTFGLASHAHTI----KIKDLSGGQKARV 713 (807)
T ss_pred -eeeeechhhhhHHhhccccCHHHHHHHhcCC------C----hHHHHHHhhhhhhhhccceE----eeeecCCcchHHH
Confidence 23589988875 476677888877543322 1 23466778899998877764 3579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
++|-.-+..|++|||||||++||..+...+-+.|.++ .-.||++||| ...+.+---.++|+.+..|- ..|.-++
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHD-eRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHD-ERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecc-cceeeecCceEEEEccCChhhccccHHH
Confidence 9999999999999999999999999988888877765 3579999999 44555544466666665443 3455333
Q ss_pred H-HHHHHhCC
Q 038004 299 T-EQLFASNG 307 (330)
Q Consensus 299 ~-~~~~~~~g 307 (330)
. .+++..+|
T Consensus 789 YkkEVLdaLG 798 (807)
T KOG0066|consen 789 YKKEVLDALG 798 (807)
T ss_pred HHHHHHHHHH
Confidence 2 23444433
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.92 E-value=8.6e-24 Score=185.20 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=156.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.+++.++.|.|+. ..+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.++|.+.-
T Consensus 13 aievsgl~f~y~~------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTS 83 (291)
T ss_pred eEEEeccEEeccc------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCcccccc
Confidence 6999999999963 347999999999999999999999999999999999965432 389999997420
Q ss_pred -cccCcEEEEeC----------CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 -LAFGTSAYVTQ----------EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 -~~~~~i~~v~Q----------~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.......|+-- +-.+-..+++.+.| |+.. +... +|-+.+++.+++.-.+ +.+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W-------RmH 146 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW-------RMH 146 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-------EEe
Confidence 01112333221 12233456776655 3321 1112 3345566666654222 246
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
.+|-|||+||.|++.|++.-++|+|||-|-.||+..+..+++.|++-++++|.||++.||-- +-+.....+++.|+.|+
T Consensus 147 kvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 147 KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGK 225 (291)
T ss_pred eccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCe
Confidence 89999999999999999999999999999999999999999999999988999999999985 46888999999999999
Q ss_pred EEEE
Q 038004 290 TIYF 293 (330)
Q Consensus 290 iv~~ 293 (330)
++..
T Consensus 226 l~~~ 229 (291)
T KOG2355|consen 226 LVDN 229 (291)
T ss_pred eeec
Confidence 9873
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.1e-24 Score=206.30 Aligned_cols=204 Identities=24% Similarity=0.266 Sum_probs=158.9
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
..+.+++.+|++.|..+ ..+++.++++.++.-.-.+++|+||+||||+++++.|-..| ..|-+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~-----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc-----
Confidence 35689999999998532 12689999999999999999999999999999999997765 358776654
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+.+++|.+|+..-+-.+.|-+.- +....+ + +. .++.++..+..+||+...--. .+..||||||-||++
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~----~~ee~r~hl~~~Gl~g~la~~----si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GK----TEEEIRRHLGSFGLSGELALQ----SIASLSGGQKSRVAF 493 (582)
T ss_pred -cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CC----CHHHHHHHHHhcCCCchhhhc----cccccCCcchhHHHH
Confidence 24689999986533333443322 222222 1 22 345677889999997543221 246899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE-EcC
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY-FGP 295 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~-~g~ 295 (330)
|.+...+|-+|+|||||+.||..+...+.+.|+.+ +-.||+|||| ..++...|+.+.+.++|++.- .|.
T Consensus 494 A~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 494 AACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHD-EEFISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECc-HHHHhhcCceeEEEcCCcEEeeecc
Confidence 99999999999999999999999988888887766 3479999999 579999999999999999963 444
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.8e-23 Score=188.51 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-ceEEEEEcCchHHHHHhcc-
Q 038004 207 NVRGVSGGQKRRVSICIEI----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG-ITVVASIHQPSSDVFELFH- 280 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tvi~itHd~~~~i~~~~d- 280 (330)
.+.+||||||||+.+|++| +.+|+++|+||||++||+..+..+++.|.+++++.| .++|++||++. .+..+||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4679999999999877554 589999999999999999999999999999975434 58999999964 5666776
Q ss_pred -EEEEEeCCe
Q 038004 281 -NLCLLAYGK 289 (330)
Q Consensus 281 -~v~vl~~G~ 289 (330)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.1e-23 Score=202.51 Aligned_cols=170 Identities=28% Similarity=0.437 Sum_probs=129.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEecccc-----------cCcEEEEeCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETLA-----------FGTSAYVTQE 152 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~~-----------~~~i~~v~Q~ 152 (330)
.++|+++||+|+||-||||-+|+|+|.+.|+- |+- .|.|..+... ..+.+||---
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 46899999999999999999999999998853 321 1112111000 0112333222
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 038004 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~ll 232 (330)
|..+-. ||.|.|.-. ..+-+.+++++.++|.+.+++.+ .+|||||.||++||.|++++.+++
T Consensus 174 Pk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 174 PKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEE
Confidence 333333 666655321 11235788999999999998875 599999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 233 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
++|||+|-||...+....+.++++++. +++||++.||+ +.+.-++|.|.+++.
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999999854 89999999995 677788999999984
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.89 E-value=3.4e-23 Score=184.68 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=108.3
Q ss_pred EEeeEEEEeCCc-EEEEEcCCCchHHHHHHHHH--------cCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCC
Q 038004 88 LQELTGYVEPGQ-ILAIMGPSGCGKSTLLDALA--------GRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 88 L~~vsl~i~~Ge-i~~IiG~nGsGKSTLl~~l~--------Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~ 158 (330)
+-++||++.+|+ +++|+||||||||||+++|+ |..-|. ... ..++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~~------------~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AEG------------SSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---ccc------------ccCcCccEEEE----
Confidence 557999999995 89999999999999999998 432221 000 01223222210
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPt 238 (330)
.++..+..+. ....+|+||+|++.|+++ +.+|+++|+|||+
T Consensus 78 ---------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 78 ---------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ---------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 0111111111 124799999999999988 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 239 SGLDSAASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 239 sgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||+..+..++ .+++.+. +.|.++|++||+ . .+..+||++++|.+|++++.+.
T Consensus 119 ~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~-~-~l~~~~d~~~~l~~g~l~~~~~ 173 (200)
T cd03280 119 SGTDPVEGAALAIAILEELL-ERGALVIATTHY-G-ELKAYAYKREGVENASMEFDPE 173 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCH-H-HHHHHHhcCCCeEEEEEEEecC
Confidence 999999999986 4677775 458999999998 3 5779999999999999987743
No 400
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.87 E-value=2.1e-22 Score=196.29 Aligned_cols=183 Identities=25% Similarity=0.403 Sum_probs=134.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
-+.++|+-+--|. +..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+- ..|...+ ....
T Consensus 481 gI~lenIpvItP~------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~------P~~~ 545 (728)
T KOG0064|consen 481 GIILENIPVITPA------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI------PRPN 545 (728)
T ss_pred ceEEecCceeccC------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec------CCCc
Confidence 3788888887763 34588999999999999999999999999999999999863 2343322 2334
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC----CCCCCCCHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ---LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG----WNVRGVSGGQKR 217 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~----~~~~~LSGGqrQ 217 (330)
++-|+||.|.+- .-|.+|.+.|+-. ++. .+.. ++....+|+.+.|++.+.+..|- .+-..|||||||
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~-kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKR-KGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHh-cCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 689999999765 3477777765421 111 1222 23455666666665443332110 012379999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|+++||.+.++|+.-+|||-||+..+.....+.+..+ ..|.+.|-|||.|.
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrps 670 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCcc
Confidence 9999999999999999999999998888877776554 45999999999975
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.87 E-value=4.6e-21 Score=168.12 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 211 VSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 211 LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|||||+||++|||+|+ .+|+++|+|||+++||+..+..+.+.|.++++ .|.++|++||++ . ....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~-~-~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKK-E-MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-H-HHhhCCeEEEEE
Confidence 8999999999999996 69999999999999999999999999999874 489999999995 3 446899999987
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=7.6e-22 Score=178.95 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=113.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEE-EEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA-YVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~e 163 (330)
..+.+|+++++.+|++++|.||||+|||||+++|+-.. + ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe------
Confidence 45899999999999999999999999999999997210 0 01122 4444322111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI--LTRPKLLFLDEP---T 238 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL--~~~P~llllDEP---t 238 (330)
.++++++.+++.+... ..+|.|++|++.+++++ +.+|+++||||| |
T Consensus 72 ---------------------~~~~il~~~~l~d~~~--------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 72 ---------------------IVDCILARVGASDSQL--------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred ---------------------ccceeEeeeccccchh--------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 1223444555554331 37999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 239 sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
++||+..... .+++.+.++.|.++|++||+ . ++.++||++..+++|++...+.
T Consensus 123 ~~lD~~~~~~--~il~~l~~~~~~~vlisTH~-~-el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAW--AIAEYIATQIKCFCLFATHF-H-ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHH--HHHHHHHhcCCCeEEEEech-H-HHHHHhhcCCCeEEEEEEEEEe
Confidence 9999887754 34455544458999999997 3 6889999999999999876654
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=182.78 Aligned_cols=186 Identities=29% Similarity=0.455 Sum_probs=142.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CCCCccEEEECCEecccccCcEEEEeCC--CCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS-----NTEQTGEILINGRKETLAFGTSAYVTQE--DTLM 156 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~-----~~~~~G~I~~~g~~~~~~~~~i~~v~Q~--~~l~ 156 (330)
...+|+||||++++|++++|+|+||||||||+++|+|.... ..+++|.|.+--.. -.++++-. |.+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 35689999999999999999999999999999999997532 12356666553211 12344443 3333
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
.-|+.|.+.-- . . .-..+.++|...||.+..-.+ +.+.+||-||+.|+.||.++...|.+++.||
T Consensus 469 -~~tilehl~s~-----t----G--D~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 469 -EVTILEHLRSK-----T----G--DLNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred -chhHHHHHhhc-----c----C--chhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 45666665311 0 0 112356789999997653322 2467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEE
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTI 291 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv 291 (330)
-.+.||+.++..+..-|.+++++.|.|++++||.+ +.+..+ -|+++.+.-|++.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999996 467777 5888888766653
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.85 E-value=2.9e-21 Score=172.37 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=107.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|...+|+.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 34678887764 79999999999999999999998642 1123433321 1367786678999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.++... ...+. +++.++++.+++ .+|+++|+|||++|+|+.
T Consensus 80 l~~~~s~------~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9765321 12222 557777776652 799999999999999999
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHh--ccEEEEEe
Q 038004 245 ASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFEL--FHNLCLLA 286 (330)
Q Consensus 245 ~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~--~d~v~vl~ 286 (330)
....+. .+++.+. +.|.++|++||++ ..+..+ .++|..++
T Consensus 122 ~~~~l~~~ll~~l~-~~~~tiiivTH~~-~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 122 ERQAASAAVLKFLK-NKNTIGIISTHDL-ELADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEcCcH-HHHHhhhcCCCeEEEE
Confidence 988765 4678876 4589999999995 455544 45555543
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.84 E-value=1.6e-20 Score=162.00 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++ +.++|++||++ .+...+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEE
Confidence 599999999999999987 78999999999999999999999999998755 89999999995 355679999998
Q ss_pred eC
Q 038004 286 AY 287 (330)
Q Consensus 286 ~~ 287 (330)
+.
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.7e-20 Score=175.42 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
.|||||+||++||++++. +|+++|+||||++||+..+..+++.|+++. + +.++|++||++ . +..+||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~-~~tii~isH~~-~-~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-R-SHQVLCITHLP-Q-VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEechH-H-HHHhcCcEEEE
Confidence 499999999999997654 999999999999999999999999999986 3 68999999996 3 56799999999
Q ss_pred eCCe
Q 038004 286 AYGK 289 (330)
Q Consensus 286 ~~G~ 289 (330)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8863
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=9.2e-20 Score=201.59 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFL 234 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llll 234 (330)
.|||.|.+.|... ...-.+.-+.|..+||.-..- | +....|||||.||+-||..|..+ +.++||
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~L---G-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLPL---G-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeeeC---C-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3566666655421 112344567899999964321 2 24568999999999999999875 799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCeEEEEcChhhHH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGKTIYFGPASMTE 300 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~iv~~g~~~~~~ 300 (330)
||||.||++.....+++.|.+|. +.|.|||+|.||+ ++...||.|+=|- .|+||+.|+++++.
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~-~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence 99999999999999999999998 5699999999995 4556699999984 47999999987654
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7e-22 Score=189.21 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=150.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+-|.++|.+++- .++.++.|.|++|-.|..+|||||||-||||||+.|+..--. .+..=.|++..+.+..
T Consensus 262 a~DIKiEnF~ISA-------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvvad 333 (807)
T KOG0066|consen 262 AMDIKIENFDISA-------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVAD 333 (807)
T ss_pred cccceeeeeeeec-------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeeec
Confidence 4568889988875 346789999999999999999999999999999999875311 0112345555443200
Q ss_pred -----------ccCcEEEEeCCC-----CCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 038004 142 -----------AFGTSAYVTQED-----TLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204 (330)
Q Consensus 142 -----------~~~~i~~v~Q~~-----~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~ 204 (330)
..++..++-... .--...|+.|-+.-.+ .++. ......+.++..+|.-+|....+..+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r-- 408 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER-- 408 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC--
Confidence 001111111110 0112346666553322 1221 11223456778899999998766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 205 ~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
....+|||.|.||++||||..+|.+|.|||||+.||......+-+.|+.+. +|++++|||. .++..+|..|+.
T Consensus 409 --Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-gFLD~VCtdIIH 481 (807)
T KOG0066|consen 409 --PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-GFLDSVCTDIIH 481 (807)
T ss_pred --CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-chHHHHHHHHhh
Confidence 457899999999999999999999999999999999998888888887764 5999999995 689999999999
Q ss_pred EeCCeEEEE
Q 038004 285 LAYGKTIYF 293 (330)
Q Consensus 285 l~~G~iv~~ 293 (330)
|++.++-++
T Consensus 482 LD~qkLhyY 490 (807)
T KOG0066|consen 482 LDNQKLHYY 490 (807)
T ss_pred hhhhhhhhh
Confidence 999887544
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.7e-19 Score=182.13 Aligned_cols=128 Identities=27% Similarity=0.379 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP---KLLFL 234 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P---~llll 234 (330)
.|||.|...|+... ..-.+..+.|..|||.-.. +| +....|||||.|||-||..|..+. -++||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36777777665432 1223455678889986331 22 345699999999999999999877 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhHHH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMTEQ 301 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~~~ 301 (330)
||||+||-..-.+++++.|.+|. +.|-|||+|.|++ ++.+.||.|+=| ..|+||+.|.|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLv-d~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLV-DKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999998 5699999999996 577899999988 3589999999987654
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.81 E-value=3.4e-19 Score=189.36 Aligned_cols=135 Identities=21% Similarity=0.359 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---C---CHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 156 MTTLTVMEAVYYSAQLQLPDS---M---SRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~---~---~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
+..++|.|.+.|...+..... . --.+..++++ +|+.+||... +++. +.+|||||+|||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 456899999988544321100 0 0013344554 6888999755 4554 569999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 229 P--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 229 P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
| ++|||||||+|||+..+..++++|++++ +.|.|||+|+|++ ..+ ..||+|++| ++|++++.|+++++
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 7 9999999999999999999999999997 5699999999996 455 469999999 99999999997654
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.81 E-value=2.7e-20 Score=166.19 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=102.3
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
-..++++.+|++++|+||||||||||+++|++..-.. ..|.... .....++|..| ++..+...+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~------~~~~~i~~~dq---i~~~~~~~d~i--- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP------AESASIPLVDR---IFTRIGAEDSI--- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc------ccccccCCcCE---EEEEecCcccc---
Confidence 3456666789999999999999999999999543110 1122110 00112233211 11111111110
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
.. ....++++++| +..+.+++.+|+++|+||||+|+|+.....
T Consensus 86 -------------------------------~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 -------------------------------SD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred -------------------------------cC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11 12356777665 666678889999999999999999998887
Q ss_pred HHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 249 VMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 249 i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.. +++.+. +.+.++|++||+. .+...|+++..+..|++...+..
T Consensus 129 l~~~ll~~l~-~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 129 IAYAVLEHLL-EKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHHHHHHHHH-hcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecC
Confidence 765 455555 4589999999994 46678999999999999887763
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=5.5e-19 Score=187.48 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMS------RSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P 229 (330)
-.|||.|.+.|...+....... -.+..+++ +.|..+||... +++ .+.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhCC
Confidence 4678888887765432110000 01112222 23677888644 344 45799999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 230 --KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 230 --~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
++|||||||+|||+.....++++|+++++ .|.|||+|+||+ ..+ ..||++++| ++|+|++.|+++++
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 89999999999999999999999999974 599999999995 455 489999999 89999999997654
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.1e-18 Score=158.85 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 209 RGVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.|.++ + .+++++|+. ..+..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCc-hhccchh
Confidence 458999999999999985 799999999999999999999999888764 2 355666653 3567777
Q ss_pred ---cEEEEEeCCeE
Q 038004 280 ---HNLCLLAYGKT 290 (330)
Q Consensus 280 ---d~v~vl~~G~i 290 (330)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=1.1e-18 Score=156.22 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=100.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEE-EEeCCCCCCCCCCHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA-YVTQEDTLMTTLTVM 162 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~ 162 (330)
+..+.+|++|++++|++++|+||||+|||||+++|+++.-- + ++| || |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a--------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----A--------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----H--------------HcCCCc---chhhcCccCh
Confidence 34689999999999999999999999999999999886411 1 111 22 4444556677
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD 242 (330)
++|.... +..+...+. ...+|+|++|+ ..+.+++.+|+++|+|||++|+|
T Consensus 73 d~I~~~~------------------------~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSRL------------------------SNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEec------------------------CCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 7663211 111111121 24799999975 55566889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 243 SAASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 243 ~~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
+.....+ ..+++.+. +.|.++|++||+. ..+...+
T Consensus 123 ~~~~~~l~~~il~~l~-~~~~~~i~~TH~~-~l~~~~~ 158 (204)
T cd03282 123 SADGFAISLAILECLI-KKESTVFFATHFR-DIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHH-hcCCEEEEECChH-HHHHHhh
Confidence 9776655 45666776 4599999999994 4444444
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.75 E-value=7.2e-18 Score=152.31 Aligned_cols=154 Identities=21% Similarity=0.100 Sum_probs=102.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+.+|++++..+ ++++|+||||||||||+|+|+++.-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 3578999999887 99999999999999999999875422 21 12122112234666654 5677777776
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCEEEEeCC---CC
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE--ILTRPKLLFLDEP---TS 239 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra--L~~~P~llllDEP---ts 239 (330)
+..+. |.=...++.|+++ .+.+|+++||||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64321 1112222233333 3579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
++|.... ...+++.+.+..+.++|++||+. ++..++|++..+.+|++...+..
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeC
Confidence 8887542 23445555433378999999994 57788998877788887765543
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.71 E-value=8.2e-17 Score=154.28 Aligned_cols=179 Identities=21% Similarity=0.302 Sum_probs=136.6
Q ss_pred cceEEeeEEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCC
Q 038004 85 HAILQELTGYVEPG-----QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 85 ~~iL~~vsl~i~~G-----ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~l 159 (330)
+.-+-+..+.|+.| |++..+|+||.|||||+++++|.++|+. .|+|-. -.++|=+|.-.--..-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCccccc
Confidence 44678888888888 5789999999999999999999998853 344422 2367777865543445
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
||++.+.--.+-. -...+-+.++++-+.+++..+..+ .+|||||.|||+||.+|-...++++.|||.+
T Consensus 418 tvR~ll~~kIr~a-------y~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKIRDA-------YMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHhHhh-------hcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 8888764322111 112345667777777777777654 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
-||+..+..--+.++++--..++|-.++.||. -...-++||+++...
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~G 532 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFEG 532 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEec
Confidence 99999998888888886544578999999994 355567999988764
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.66 E-value=5.9e-16 Score=144.08 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
..++|+||||||||||+++|+|++++. +|+|.++|+++... ...+++++|+. +.++++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999874 69999999875311 12345666643 3344455443200
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
..| ..+.++..+|+++|+|||++ ...+..+
T Consensus 183 ---------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 001 12223336999999999974 2335555
Q ss_pred HHHHHhcCCceEEEEEcCchH-HH-----------HHhccEEEEEeCCeEEEEcC
Q 038004 253 IVNLAHEDGITVVASIHQPSS-DV-----------FELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~-~i-----------~~~~d~v~vl~~G~iv~~g~ 295 (330)
++.+. .|.++|+++|+... .+ ..+|||+++|++|+ ..|.
T Consensus 213 ~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~ 263 (270)
T TIGR02858 213 LEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGT 263 (270)
T ss_pred HHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCc
Confidence 55543 48999999998421 12 25689999999876 4444
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.61 E-value=3.2e-16 Score=138.11 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
..||+|++|...+++ .+.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||++ .+.++||+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhc
Confidence 478888887444333 23599999999999999999877765 556666543488999999995 47778874
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.2e-14 Score=131.00 Aligned_cols=129 Identities=24% Similarity=0.253 Sum_probs=86.3
Q ss_pred EEEeCC--cEEEEEcCCCchHHHHHHHHHc--CCCCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHHHHHH
Q 038004 93 GYVEPG--QILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVMEAVYY 167 (330)
Q Consensus 93 l~i~~G--ei~~IiG~nGsGKSTLl~~l~G--l~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e~l~~ 167 (330)
+.+.++ .+++|.||||+|||||||.|+. ++. ..|...... ...++|..|... +....++.+.
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~~--- 88 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPAD------SATIGLVDKIFTRMSSRESVSSG--- 88 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEcC------CcEEeeeeeeeeeeCCccChhhc---
Confidence 334444 7899999999999999999984 332 136544321 124666666432 2122122111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS--GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS--GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+| .-+.||+++|++++.+|.++|+|||++|+|+..
T Consensus 89 -------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 89 -------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 11 235689999999999999999999999999976
Q ss_pred HHHH-HHHHHHHHhc--CCceEEEEEcCchHHHHHh
Q 038004 246 SYHV-MKRIVNLAHE--DGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 246 ~~~i-~~~L~~l~~~--~g~tvi~itHd~~~~i~~~ 278 (330)
...+ ..+++.+.+. .+.++|++||++ ..+...
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~-~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFH-ELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChH-HHHHhh
Confidence 5444 5688888643 135899999995 444443
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.60 E-value=5.6e-14 Score=136.30 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 209 RGVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+|.||+|+++||++|+ .+|++||||||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCCh-hhhhhhh
Confidence 479999999999999985 799999999999999999999999888654 34789999985 3555554
Q ss_pred --cEEEEEeCCeE
Q 038004 280 --HNLCLLAYGKT 290 (330)
Q Consensus 280 --d~v~vl~~G~i 290 (330)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999987
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.58 E-value=1.9e-15 Score=136.17 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 184 ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 184 ~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
+.+.+.+..+.+.. ..||||||.+++||.-|+ ...+++||||+.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44556666665532 379999999999997663 57899999999999999999999999999863
Q ss_pred CCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 260 DGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 260 ~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+.-+|++||+. .....+|+.+.+.
T Consensus 189 -~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 -QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -ccccccccccc--ccccccccccccc
Confidence 47799999994 5788899877654
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.56 E-value=4.4e-15 Score=155.99 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=89.4
Q ss_pred eEEEEeCC-cEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHHHHHH
Q 038004 91 LTGYVEPG-QILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVMEAVYY 167 (330)
Q Consensus 91 vsl~i~~G-ei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e~l~~ 167 (330)
+|+.+..+ ++++|.||||+|||||||+|+|.. .+ ..|. +|+.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G~----------------~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSGI----------------PIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhCC----------------CccCCcccccc---chhhee-
Confidence 78889887 999999999999999999999872 22 1231 2222221 111 111110
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~ 247 (330)
.. +... +.+. . ....||+||++++.|++++ .+|.++|+|||++|+|+....
T Consensus 371 -~~------i~~~---~si~-------------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---QSIE-------------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---hHHh-------------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0110 1 1247999999999999887 899999999999999999999
Q ss_pred HH-HHHHHHHHhcCCceEEEEEcCc
Q 038004 248 HV-MKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 248 ~i-~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+ ..+|..+. +.|.++|++||+.
T Consensus 422 ala~aiLe~l~-~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLL-KQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHH-hcCCEEEEECChH
Confidence 88 56777776 4689999999994
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.53 E-value=2.8e-14 Score=137.09 Aligned_cols=172 Identities=26% Similarity=0.374 Sum_probs=119.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC--CccEEE------ECCEeccccc-----------CcEEEEeCCCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTE--QTGEIL------INGRKETLAF-----------GTSAYVTQEDTLM 156 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~--~~G~I~------~~g~~~~~~~-----------~~i~~v~Q~~~l~ 156 (330)
++|++.|++|.||-||||-+++++|-++|+-. ..+-.+ +.|-.+...+ -..+||-|-|...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999988520 011110 1110000000 0011221111110
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
. .+|++.| .....+....++++.+.|....++.+ .+||||+-||.+||.+-+++.++.++||
T Consensus 178 k-~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecC
Confidence 0 1222222 11222335667788888877777754 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|.+-||+..+..--..++.+. .-..=||++.||+ +.+.-+.|-+++++.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~-~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLI-NPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhh-CCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 999999999999999999987 4578899999995 577778999999984
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.50 E-value=2.9e-14 Score=114.33 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=59.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~l 159 (330)
+.+|++++|++++|++++|+||||||||||++++. +|+|.++|.+... ..+.++|++|+ +++ .
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 46899999999999999999999999999999986 3899999987531 12346677776 444 4
Q ss_pred CHHHHHHHHH
Q 038004 160 TVMEAVYYSA 169 (330)
Q Consensus 160 Tv~e~l~~~~ 169 (330)
|++|||.++.
T Consensus 70 ti~~Ni~~~~ 79 (107)
T cd00820 70 RLRLNIFLIT 79 (107)
T ss_pred hHHhhceeee
Confidence 8999998753
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.48 E-value=3.5e-13 Score=133.21 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=108.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c----------cccCcEEEEe
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T----------LAFGTSAYVT 150 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~----------~~~~~i~~v~ 150 (330)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+++ .|.|.+.|+.- . ...+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998774 69999866432 1 0124577786
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC-HHHHHHHHHHHHHhcCC
Q 038004 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS-GGQKRRVSICIEILTRP 229 (330)
Q Consensus 151 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS-GGqrQRv~IAraL~~~P 229 (330)
+-+. ++.+-+.-+. ..-.+.+.+..-|-.-.. + ...|+ --|.+| .+.
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~~Vll---~----~Dsltr~A~A~r-----Eis--- 268 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGLNVML---M----MDSVTRVAMAQR-----EIG--- 268 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCCcEEE---E----EeChHHHHHHHH-----HHH---
Confidence 5322 1111110000 000111222222211000 0 00111 001111 000
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----eEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 230 KLLFLDEP--TSGLDSAASYHVMKRIVNLAH-EDGI-----TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 230 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.+.|| |+|+|+.....+.+++.++.. +.|. ||++.+||+. ..+||++.+|.+|+|+..+..
T Consensus 269 --l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 269 --LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred --HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccH
Confidence 012354 789999999999999999864 3575 9999999974 389999999999999999984
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=8.3e-14 Score=125.05 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q 038004 210 GVSGG--QKRRVSICIEILTRPKLLFLDEPT-----SGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 210 ~LSGG--qrQRv~IAraL~~~P~llllDEPt-----sgLD~~~~~~i~~~L~~l~ 257 (330)
..+|+ |++++.||++++.+|+++++|||| ++||+..+..+.+.+++++
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34444 999999999999999999999999 9999999999999999986
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.46 E-value=1.6e-13 Score=140.30 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 209 RGVSGGQKRRVSICIEILTR----PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~----P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
..|||||+||++||++++.. |++||||||++|||+..+..+.+.|++++ + +.+||+|||++ . +..+||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~-~-~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLP-Q-VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChH-H-HHHhcCeEEE
Confidence 47899999999999999985 69999999999999999999999999996 3 79999999996 3 4468999999
Q ss_pred EeCCe
Q 038004 285 LAYGK 289 (330)
Q Consensus 285 l~~G~ 289 (330)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98753
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=3.2e-13 Score=122.41 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=84.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR-LSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl-~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
..+..|++|.+.+|++++|+||||+||||++++|++. +.+ ..|....... -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~~------~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPASS------ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcCc------eEEeccce---EEEEecCcc
Confidence 4589999999999999999999999999999999994 333 3465544321 11222211 111111112
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS--GGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS--GGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.+.. ++| ..|-+|++-....+.+|.++|+|||.+|.
T Consensus 86 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQH------------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cccc------------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 1110 111 11223333333345679999999999998
Q ss_pred CHHHHHHH-HHHHHHHHhcCCceEEEEEcCc
Q 038004 242 DSAASYHV-MKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 242 D~~~~~~i-~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|+.....+ ..+++.+.+..+.++|++||++
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 87766664 5677777644488999999995
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=3.5e-13 Score=146.87 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 206 WNVRGVSGGQKRRVSICIEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
+.+..|||||++||+||+||+. +|++||+||||++||+.....+++.|..+.. .|.+|+||||++ ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHH
Confidence 3567999999999999999986 7999999999999999999999999999974 699999999995 588
Q ss_pred HHhccEEEEEeCC
Q 038004 276 FELFHNLCLLAYG 288 (330)
Q Consensus 276 ~~~~d~v~vl~~G 288 (330)
..+||+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999764
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.43 E-value=3.1e-13 Score=137.94 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=69.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 207 NVRGVSGGQKRRVSICIEIL----------TRPKLLFLDEPT-SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----------~~P~llllDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..|||||+||++||+||+ .+|++||||||| ++||+.....+++.|.++ .|.+||+|||++ ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hc
Confidence 45789999999999999987 599999999998 789999999999999987 278999999995 35
Q ss_pred HHhccEEEEEeC-CeE
Q 038004 276 FELFHNLCLLAY-GKT 290 (330)
Q Consensus 276 ~~~~d~v~vl~~-G~i 290 (330)
...||++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 578999999986 543
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.42 E-value=6.9e-13 Score=135.17 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
.|||||+||++||++++. +|+++|+|||++|||..+...+.+.|++++ + +.+||+|||++ .+..+||+.+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 589999999999999997 689999999999999999999999999996 3 68999999996 356899999999
Q ss_pred eCC
Q 038004 286 AYG 288 (330)
Q Consensus 286 ~~G 288 (330)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 874
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.40 E-value=4.9e-13 Score=140.94 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
..||+||+|++.|++++ .+|.++|+|||++|+|+.....+.. ++..+. +.|.++|++||+. ......+++..++ +
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 47999999999999998 8999999999999999999888854 566665 4589999999994 4555556655544 3
Q ss_pred CeEEE
Q 038004 288 GKTIY 292 (330)
Q Consensus 288 G~iv~ 292 (330)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 45544
No 433
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=2.1e-12 Score=116.76 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=89.3
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+-+|++|..++|++++|.||||+||||+++++++..--. ..|. ........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCccccEeccc---cEEEEecCcccc
Confidence 46889999999999999999999999999999998863210 0121 111000111111 122233333333
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+..+.. .+. .|-+++.-....+.+|.++|+|||++|+++.
T Consensus 86 ~~~~~S---------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 86 IMKGES---------------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred cccCcc---------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 321100 000 1223333333345689999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 245 ASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 245 ~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
....+... ++.+.+..+.++|++||++ ..+..++
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~~ 160 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHhh
Confidence 98888877 6677643489999999995 4555554
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.38 E-value=1.8e-12 Score=119.46 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=104.1
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC--CEe-cc--ccc---CcEEEEeCCCCCCCCC---CH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN--GRK-ET--LAF---GTSAYVTQEDTLMTTL---TV 161 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~--g~~-~~--~~~---~~i~~v~Q~~~l~~~l---Tv 161 (330)
+.+.+||.++|+|++|+|||||++.|++...... ....+++- ++. .. ... ..+-++.+-.. .+.. ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 5688999999999999999999999999875421 11232221 211 10 000 11222222111 1110 01
Q ss_pred HHHHHHHHhhcCCC-C--CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH--------HHHHHHHHHHhcCCC
Q 038004 162 MEAVYYSAQLQLPD-S--MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ--------KRRVSICIEILTRPK 230 (330)
Q Consensus 162 ~e~l~~~~~~~~~~-~--~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq--------rQRv~IAraL~~~P~ 230 (330)
+..+..+..++... . +--++. .+..+..+.+.+. ....+|||+ +||+++||++..+++
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~~----------~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVPP----------SGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhcccc----------CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 11111111111000 0 000011 1222233333322 124689999 999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 231 LLFLDEPTSGLDSAASYH-VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 231 llllDEPtsgLD~~~~~~-i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|.+| ||+.+|...... ++ +..+. ..+.|.|+++|++ .....+|.|.||+.|.+..
T Consensus 158 It~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~l--a~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 158 LTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRL--AERRIFPAIDILKSGTRKE 213 (249)
T ss_pred eEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHH--hhCCCCCeEEEcCCCCccc
Confidence 9999 999999544333 43 45553 3578999999995 3567899999999999853
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.35 E-value=1.2e-11 Score=112.86 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=91.4
Q ss_pred EeCCcEEEEEcCCCchHHHH-HHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 95 VEPGQILAIMGPSGCGKSTL-LDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTL-l~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
+++|++++|.|+|||||||| +++++++.++ | ..+.|+..+ .+..+.+.....+..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g-------------~~~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN-----G-------------YSVSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----C-------------CcEEEEeCC------CCHHHHHHHHHHhCC
Confidence 68999999999999999999 6898887643 2 123444421 244455544332211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCC----CHHH
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGL----DSAA 245 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgL----D~~~ 245 (330)
. +++.... +. .....+ + ..+|+++.++..+.+.+-. +|+++++||||+++ |+..
T Consensus 77 ----~-------~~~~~~~-~~--l~~~~~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 ----D-------INKKLIS-GK--LLYIPV---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred ----c-------hHHHhhc-Cc--EEEEEe---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 1 1111111 10 000111 1 2467777666665554433 69999999999999 8888
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchH-------HHHHhccEEEEEe
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSS-------DVFELFHNLCLLA 286 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~-------~i~~~~d~v~vl~ 286 (330)
...+++.++.+++ .|.|+++++|. .. .+..+||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~-~g~tvi~t~~~-~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISS-LNKVIILTANP-KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEecc-cccccccceeEEEeeeEEEEEE
Confidence 8889999999874 47777665543 21 1244567787776
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.35 E-value=2.8e-12 Score=114.37 Aligned_cols=63 Identities=25% Similarity=0.492 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 208 VRGVSGGQKRRVSICIEILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
...+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|....+ .+.-+|++||.+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 3467999999999999888766 89999999999999999999999988864 578999999996
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.34 E-value=1.2e-11 Score=107.93 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCceEEEEEcCchH----
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLD---SAASYHVMKRIVNLAHEDGITVVASIHQPSS---- 273 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~---- 273 (330)
.+..+|+|++| ....+.+...+|+++++|||++.+| ......+.++++.+++ .|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcc
Confidence 35689999998 5555555678999999999999999 8788888888888874 59999999998432
Q ss_pred ----HHHHhccEEEEEe
Q 038004 274 ----DVFELFHNLCLLA 286 (330)
Q Consensus 274 ----~i~~~~d~v~vl~ 286 (330)
.+..+||.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 1678899999987
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=99.34 E-value=3.5e-12 Score=136.71 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
.+..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..++. .+.+||++||++ .+...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 46789999999 55666788899999999999999999999999999999864 478999999995 3668999
Q ss_pred EEEEEeC
Q 038004 281 NLCLLAY 287 (330)
Q Consensus 281 ~v~vl~~ 287 (330)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.33 E-value=6.7e-13 Score=115.56 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEP--TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
..+||+++-++.+++..+.+|++||+||| +.++|. .+.+.+.++. +.|.++|+++|+ . .+..++|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~-~~~~~~i~v~h~-~-~~~~~~~~i~~~~ 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVL-DSEKPVIATLHR-R-SVHPFVQEIKSRP 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHH-hCCCeEEEEECc-h-hhHHHHHHHhccC
Confidence 36999999999999999999999999994 445553 3456666665 458999999998 3 5778999999999
Q ss_pred CCeEEEEcC
Q 038004 287 YGKTIYFGP 295 (330)
Q Consensus 287 ~G~iv~~g~ 295 (330)
+|++++.-+
T Consensus 150 ~~~i~~~~~ 158 (174)
T PRK13695 150 GGRVYELTP 158 (174)
T ss_pred CcEEEEEcc
Confidence 999987744
No 440
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.30 E-value=8.3e-12 Score=135.91 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH
Q 038004 206 WNVRGVSGGQKRRVSICIEILT--------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~--------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~ 277 (330)
+++..|||||+++++||+||+. +|++||+||||++||+.....+++.|..+++ .|++|+||||. ......
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~-~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHV-EAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecH-HHHHHh
Confidence 3578999999999999999996 8999999999999999999999999999974 59999999998 456777
Q ss_pred hccEEEEEeC
Q 038004 278 LFHNLCLLAY 287 (330)
Q Consensus 278 ~~d~v~vl~~ 287 (330)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 7788888765
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.29 E-value=1.2e-11 Score=133.09 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-ceEEEEEcCchHHHHHh
Q 038004 207 NVRGVSGGQKRRVSI------CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED-G-ITVVASIHQPSSDVFEL 278 (330)
Q Consensus 207 ~~~~LSGGqrQRv~I------AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~-g-~tvi~itHd~~~~i~~~ 278 (330)
.+..|||||++|++| |++|+.+|++++|||||++||+.....+.++|....+.. | .+||++|||+ . ...+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~-~-~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR-E-LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch-H-HHHh
Confidence 467999999999975 599999999999999999999999999999998654343 3 4899999995 3 4579
Q ss_pred ccEEEEEe
Q 038004 279 FHNLCLLA 286 (330)
Q Consensus 279 ~d~v~vl~ 286 (330)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 442
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=8.8e-11 Score=120.67 Aligned_cols=137 Identities=18% Similarity=0.291 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC-
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT------IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR- 228 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~- 228 (330)
+..|++.+.+.|...+.+.. .........++++ |-.+||.-.-- ++....|||||.||+-||.-+-..
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL----~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTL----SRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccc----cccCCCcChhHHHHHHHHHHhcccc
Confidence 34577777777766554211 1111122223333 33467753322 223469999999999999999654
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhHH
Q 038004 229 -PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMTE 300 (330)
Q Consensus 229 -P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~~ 300 (330)
-=+++||||+-||-+.--.++++.|++++ +.|-|+|++.||. +....+|+|+=| +.|+|++.|+++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 45789999999999999999999999997 6799999999993 577889999987 468999999987654
No 443
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.22 E-value=6.4e-10 Score=118.38 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=59.7
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH---------HhccEEEEEeCCeEEEEcC
Q 038004 226 LTRPKLLFLDEPTSGL-DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF---------ELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 226 ~~~P~llllDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~---------~~~d~v~vl~~G~iv~~g~ 295 (330)
..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||++. ++. ..|+++++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999874 5899999999974 443 6899999999999877665
Q ss_pred h
Q 038004 296 A 296 (330)
Q Consensus 296 ~ 296 (330)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 444
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=3.1e-11 Score=134.31 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEcCchHHHHH
Q 038004 208 VRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----EDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 208 ~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~itHd~~~~i~~ 277 (330)
+..||||||| |++|||||+.+|++|+|||||++||+.....+.+.|..+.. ..|.+||+||||+ .++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHH
Confidence 3589999999 99999999999999999999999999999999998888742 2478999999995 57877
Q ss_pred hc
Q 038004 278 LF 279 (330)
Q Consensus 278 ~~ 279 (330)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 76
No 445
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.19 E-value=1.1e-10 Score=115.01 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=115.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++-+.++..|.+ +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~T------GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer------ 193 (432)
T PRK06793 130 AFEREEITDVFET------GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER------ 193 (432)
T ss_pred chheechhhccCC------CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC------
Confidence 3566666666532 34688885 999999999999999999999999999998763 4666555432
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
. .+|.|.+...... -++... ..+ ....+-|.|+|+|++.+.+
T Consensus 194 --------g-----~ev~e~~~~~l~~---------------------~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 --------G-----REVKDFIRKELGE---------------------EGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred --------c-----ccHHHHHHHHhhh---------------------ccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 1 3666665422110 011100 000 0235789999999999999
Q ss_pred Hh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 225 IL-------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 225 L~-------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
.+ .++-+|++|+||+..|+. .+|...+.+... .|.+..+.+|. . ++++|......|.|...+
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM-K----KLLERSGKTQKGSITGIY 304 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc-h----hHHHHhccCCCcceEEEE
Confidence 88 799999999999999985 566666666653 47888887874 2 344444455788876554
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.19 E-value=2.9e-11 Score=132.49 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++..|||||+||++||++++ ..|+++||||||++||+.....+.++|..+++ +.++|||||++. ...+||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 56799999999999999984 67799999999999999999999999999863 478999999963 45789999
Q ss_pred EEEe
Q 038004 283 CLLA 286 (330)
Q Consensus 283 ~vl~ 286 (330)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7664
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.18 E-value=1.1e-10 Score=111.08 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-cccc-cCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLA-FGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
+++.++.|+.++|+|++|||||||+++|++++++. .|.+.+.... .... ...++++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~--~----------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG--Q----------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--C-----------
Confidence 56778899999999999999999999999999763 4666664321 0000 011222211100 0
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
+ . ..++- .-.++.+|-.+|++|++|||.+ .+
T Consensus 201 -------------------------~------~-------~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G------L-------AKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C------c-------CccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 01111 1245567788999999999996 34
Q ss_pred HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
++++++.+. ..+.+++.++|... +....+|+..|..|++...|.+.+.
T Consensus 232 ~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 232 AFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 556677665 32346799999953 6777999999999999888876544
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.16 E-value=9.9e-11 Score=98.75 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTS----------GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPts----------gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
..+.++.++...+++...+|+++++||+++ +.|......+.+++... ++.+.++|+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~ 138 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPS 138 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCC
Confidence 456667778889999999999999999995 44545455555554444 467999999999853
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=7.4e-10 Score=96.59 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEE
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLL 285 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl 285 (330)
..+..|-||-=--.+.+.+ .+--++|||||-++|.|.-|..++..|+++++ .|.-+|+.||-|. +..+ --+|+-+
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi--LlAiP~A~I~~~ 201 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI--LLAIPGAEIYEI 201 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh--heeCCCcEEEEE
Confidence 3457899997666666654 55679999999999999999999999999985 5899999999973 3332 3466666
Q ss_pred eCCeE
Q 038004 286 AYGKT 290 (330)
Q Consensus 286 ~~G~i 290 (330)
+.+-+
T Consensus 202 ~~~g~ 206 (233)
T COG3910 202 SESGI 206 (233)
T ss_pred ecCCc
Confidence 66544
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.09 E-value=2e-10 Score=126.16 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++..||||||++++||++|+. .|+++|||||+++||+.....+.++|.++++ +..+|++||+. ....+||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhccee
Confidence 457899999999999999985 7899999999999999999999999999853 47899999995 356899999
Q ss_pred EEEeC
Q 038004 283 CLLAY 287 (330)
Q Consensus 283 ~vl~~ 287 (330)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 88764
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.08 E-value=5.6e-10 Score=102.14 Aligned_cols=136 Identities=29% Similarity=0.441 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC-EecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g-~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 176 (330)
|.+..|+||+|+|||||+-.++=-.. .|.=++.+ ... ....++-|+.=+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999888863221 23211111 111 0112344443211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCCC
Q 038004 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI----------------EILTRPKLLFLDEPTSG 240 (330)
Q Consensus 177 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr----------------aL~~~P~llllDEPtsg 240 (330)
+..+..+|+..+...+++.+..++.+ ..+|+.|++.+++ +...+|+++|+| |+++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12334455666666666544333221 2256666665554 345899999999 7754
Q ss_pred ------CCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 241 ------LDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 241 ------LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+|+.....+++.|.+++++.|.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 7999999999999999887899999999984
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=99.06 E-value=4.1e-10 Score=120.98 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-eEEEEEcCchHH
Q 038004 208 VRGVSGGQKR------RVSICIEILTR-----P-KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI-TVVASIHQPSSD 274 (330)
Q Consensus 208 ~~~LSGGqrQ------Rv~IAraL~~~-----P-~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~itHd~~~~ 274 (330)
+..||||||+ |++||++++.+ | +++||||||++||+.....++++|..+.. .|. +||++|||+ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~-~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD-EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh-HH
Confidence 5699999999 99999999864 3 67999999999999999999999999874 454 799999996 34
Q ss_pred HHHhccEEEEEeC
Q 038004 275 VFELFHNLCLLAY 287 (330)
Q Consensus 275 i~~~~d~v~vl~~ 287 (330)
+ ..||++++|..
T Consensus 857 ~-~~ad~~~~~~~ 868 (880)
T PRK02224 857 V-GAADDLVRVEK 868 (880)
T ss_pred H-HhcCeeEEeec
Confidence 4 67999999964
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.05 E-value=2.5e-09 Score=97.45 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALA-GRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
-|+.+ ..=+++|.++.|.|++|||||||...++ +... +| ..+.|+.-+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------~g-------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----------QG-------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----------CC-------CEEEEEEcCC------CHHHH
Confidence 34443 4458899999999999999999998874 2211 11 1244544422 23333
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC--
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT--RPKLLFLDEPTSG-- 240 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~--~P~llllDEPtsg-- 240 (330)
+.-...+. +.- .+.+. .+.-...+.... .....|.++.+.+.+++.++. +|+++++||||+.
T Consensus 69 ~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 32221111 110 00100 011111111000 112457889999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH------HHHHhccEEEEEeC
Q 038004 241 -LDSAASYHVMKRIVNLAHEDGITVVASIHQPSS------DVFELFHNLCLLAY 287 (330)
Q Consensus 241 -LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~------~i~~~~d~v~vl~~ 287 (330)
+|......+++.++.++ +.|.|+++++|+... .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666676666 458999999997431 15667788877764
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.02 E-value=2.1e-10 Score=113.34 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=44.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEEECCEecc
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EILINGRKET 140 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~~~g~~~~ 140 (330)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECC
Confidence 36899999999999999999999999999999 6777663 45 8999998763
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.99 E-value=1.7e-09 Score=108.00 Aligned_cols=173 Identities=19% Similarity=0.263 Sum_probs=103.3
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.++++.++.+..|++++++||||+||||++..|++.+... .|. +++++|.+|. .+.++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3567778888899999999999999999999999976431 232 2478888876 457899999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHhcCC-----CEEEEeCCCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR-RVSICIEILTRP-----KLLFLDEPTS 239 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ-Rv~IAraL~~~P-----~llllDEPts 239 (330)
.+.+.+... +........+..+...+|.+.....+ .+...+|+. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 886654321 11111222334445566665433332 343323322 233444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch--------HHHHHhccEEEEEeCCeEE
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS--------SDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~--------~~i~~~~d~v~vl~~G~iv 291 (330)
+- .+.+.++.+. ..+.+-++.|+--. ..+...-=-|.++..|+-|
T Consensus 378 ~~------~l~~i~~~f~-~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 378 GD------TLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HH------HHHHHHHHhc-cCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 73 3444455554 34666566665311 1222222346666666644
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.97 E-value=3.9e-09 Score=94.05 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+|+++|..+|+++++|||. |......+ + +.+ ..|..++.++|... +...++|++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5788999999999999996 55543332 2 334 35889999999953 346678776664
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=6.6e-08 Score=78.26 Aligned_cols=119 Identities=29% Similarity=0.422 Sum_probs=77.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 176 (330)
.+..+.|+||+|+||||+++.|+..+.... .+-+.++...... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~-~~~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------E-VLDQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------c-CHHHHH-----------
Confidence 367899999999999999999999876420 1234444322100 0 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 038004 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK----- 251 (330)
Q Consensus 177 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~----- 251 (330)
. ..... ......+++..+..++++--..|.+|++||+..-.+.........
T Consensus 51 --------------~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------L-----IIVGG-----KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------h-----hhhhc-----cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0 00000 113578888888888888888899999999999999887776554
Q ss_pred HHHHHHhcCCceEEEEEc
Q 038004 252 RIVNLAHEDGITVVASIH 269 (330)
Q Consensus 252 ~L~~l~~~~g~tvi~itH 269 (330)
.........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 123333345788999998
No 458
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.88 E-value=5e-09 Score=103.59 Aligned_cols=109 Identities=22% Similarity=0.204 Sum_probs=77.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC---Eecc--------cccCcEEEE---
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKET--------LAFGTSAYV--- 149 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g---~~~~--------~~~~~i~~v--- 149 (330)
+..+++++ |.+.+||.++|+|+||||||||+++|+|+.+.. ..|.|.+.| ++.. ....+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999988532 236777755 3221 011234455
Q ss_pred --eCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 038004 150 --TQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196 (330)
Q Consensus 150 --~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 196 (330)
+|+|. +.+.+ +...+...++.+....+...+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88874 67766 777776665544222223356678899999999994
No 459
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.85 E-value=2.4e-09 Score=105.62 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=66.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-----------cccCcEEEEeCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-----------LAFGTSAYVTQE 152 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-----------~~~~~i~~v~Q~ 152 (330)
+..+|+++ |++.+||+++|+|+||||||||+++|+|+..++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998764211244444443221 112358899999
Q ss_pred CCCCCCCCHHHHHHHHHhh
Q 038004 153 DTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~~~~~ 171 (330)
...+..+++.+++.+.+.+
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999998766543
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.81 E-value=1.6e-09 Score=109.08 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=96.4
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHH--HcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCCCCC
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l--~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~l 159 (330)
-|+.+ ..=+++|.++.|.|++|||||||..-+ .|..... +..+++....... ....++|-+++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 35554 446789999999999999999999866 4544321 2345554432110 0112333322110000
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC--IEILTRPKLLFLDEP 237 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA--raL~~~P~llllDEP 237 (330)
++.+ +. .... .....+++.+++.+..++. +..+|+|++|||.|+ .+|...|+.+
T Consensus 84 ----~l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD----ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee----cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 0011123444554444443 348999999999999 6666666543
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH--------HHHHhccEEEEEe
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS--------DVFELFHNLCLLA 286 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~--------~i~~~~d~v~vl~ 286 (330)
...+..++++++.++ +.|.|+|+++|+... ....+||.|++|+
T Consensus 140 -----~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 466788888888886 569999999998531 1256899999987
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=8.4e-09 Score=100.29 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 210 GVSGGQKRRVSICIEILT---------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~---------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+|.||+|+++||.+|+. +|+|||||||+++||+..+..+++.|... |..+++++|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 689999999999999999 99999999999999999999999988653 67999999995
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.80 E-value=4.7e-09 Score=95.14 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.8
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
-|+.+ ..=+++|+++.|.|++|||||||+..++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 3458899999999999999999988655
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.79 E-value=9.7e-09 Score=90.49 Aligned_cols=81 Identities=25% Similarity=0.209 Sum_probs=59.6
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc-ccCcEEEEeCCC--CCCCCCCHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL-AFGTSAYVTQED--TLMTTLTVM 162 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~-~~~~i~~v~Q~~--~l~~~lTv~ 162 (330)
..+=+.+.+++|+.++|+||||||||||+++|+|++++. .|.|.+.+... .. ....+++++|.. ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999999863 68999977432 11 123466766654 346678888
Q ss_pred HHHHHHHh
Q 038004 163 EAVYYSAQ 170 (330)
Q Consensus 163 e~l~~~~~ 170 (330)
+.+....+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876554
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.78 E-value=7.6e-09 Score=91.74 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=65.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMS 178 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~ 178 (330)
++||.|+||||||||+++|.+++. .|.+.+ +.+|... ..++..+...... ....+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~~v--------------~~~D~~~-~~~~~~~~~~~~~~~~~~~~--- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKVVI--------------ISQDSYY-KDLSHEELEERKNNNYDHPD--- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCeEE--------------EEecccc-cccccccHHHhccCCCCCCC---
Confidence 589999999999999999999872 133333 3333221 1112222111110 000111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 179 ~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
....+...+.+..+......+.+ ..++|.|++++..+ .+..|+++|+|+|+.+.++
T Consensus 58 -~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 -AFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -cccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11122344556666554433332 35788888877655 5788999999999999886
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.75 E-value=2e-07 Score=99.88 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGL-DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||++. ++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHh
Confidence 678889999999999999999 79999999999999874 5889999999965 444
No 466
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.72 E-value=3.5e-08 Score=97.57 Aligned_cols=81 Identities=27% Similarity=0.246 Sum_probs=64.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC---Eecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g---~~~~ 140 (330)
..++.++++..|.+ +..+++.++ .|.+||.++|+|+||||||||+++|+++..++ .|.|.+.| ++..
T Consensus 138 ~~~~r~~v~~~l~T------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~ 207 (450)
T PRK06002 138 PAMTRARVETGLRT------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVR 207 (450)
T ss_pred CCeEeecceEEcCC------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHH
Confidence 46899999999853 357899996 99999999999999999999999999998763 68888865 3321
Q ss_pred ---------cccCcEEEEeCCCC
Q 038004 141 ---------LAFGTSAYVTQEDT 154 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~ 154 (330)
...+.++||+|.+.
T Consensus 208 e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 208 EFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhHHHHHHhhCCeEEEEEcCCC
Confidence 11246999999653
No 467
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.72 E-value=4.8e-08 Score=105.47 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=68.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 207 NVRGVSGGQKRRVSICIEIL------TR--PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~------~~--P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....+++.|..+... +.+|++|||+. .+...
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHHh
Confidence 56799999999888887764 45 7999999999999999999999999999854 89999999993 57789
Q ss_pred ccEEEEEeC
Q 038004 279 FHNLCLLAY 287 (330)
Q Consensus 279 ~d~v~vl~~ 287 (330)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999888865
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.71 E-value=2.6e-08 Score=106.46 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=85.5
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+-.|+++. ..+.++.|.|||++||||+||.++-..--. .-| .|||=... .+.+.+.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a---~i~~~d~I 653 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESA---RIGIVDRI 653 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------Cceeccce---EecccCee
Confidence 356677777 667899999999999999999986432000 011 12322111 01111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT--RPKLLFLDEP---TSG 240 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~--~P~llllDEP---tsg 240 (330)
+.++|-.+.. ..++|.=+.....++..|-. ++.++|+||| |+.
T Consensus 654 ------------------------~triga~d~i--------~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~ 701 (854)
T PRK05399 654 ------------------------FTRIGASDDL--------ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTST 701 (854)
T ss_pred ------------------------eeccCccccc--------ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCc
Confidence 1111111111 12567777777777777654 9999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 241 LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
+|.. ...+.++..+.+..+.++|++||+ . ++..++++
T Consensus 702 ~dg~--aia~aile~l~~~~~~~~l~aTH~-~-el~~l~~~ 738 (854)
T PRK05399 702 YDGL--SIAWAVAEYLHDKIGAKTLFATHY-H-ELTELEEK 738 (854)
T ss_pred chhH--HHHHHHHHHHHhcCCceEEEEech-H-HHHHHhhh
Confidence 9943 445667777765446899999999 3 56677764
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.69 E-value=6.8e-08 Score=95.87 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=102.3
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c---------cccCc-EEEEe
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T---------LAFGT-SAYVT 150 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~---------~~~~~-i~~v~ 150 (330)
+..+++++ |.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|+.- . ...++ +.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 999999999999999999999999999998763 46666655421 1 00122 33333
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhcCC
Q 038004 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG-GQKRRVSICIEILTRP 229 (330)
Q Consensus 151 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG-GqrQRv~IAraL~~~P 229 (330)
+-+. +..+-..-+. .--.+.+.+...|-.-.. + ...|+- -|.+| .|+
T Consensus 226 ~~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~~Vll---~----~DslTr~A~A~R-Eis------- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAY------------VATAIAEYFRDQGKDVLL---L----MDSVTRFAMAQR-EIG------- 273 (440)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCCCEEE---E----EeChHHHHHHHH-HHH-------
Confidence 3221 1111111000 000111222222321100 0 001110 11111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-------eEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 230 KLLFLDEP--TSGLDSAASYHVMKRIVNLAHEDGI-------TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 230 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~~~g~-------tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.+.|| +.|+|+.....+.+++.+.. ..+. ||++.+||+. ..++|++..+.+|+|+.....
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecch
Confidence 223565 55999999999999999986 3466 8888999952 468999999999999998874
No 470
>PRK14079 recF recombination protein F; Provisional
Probab=98.68 E-value=4.7e-08 Score=94.54 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 210 GVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
-+|+||+++++||+.|+ .+|++++||||+++||...+..+++.|.... .++|-+|+. ...||
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~~-----~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTEA-----PPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCCC-----CCCCc
Confidence 68999999999999999 8999999999999999999999988875431 234333432 36899
Q ss_pred EEEEEeCCeEEEE
Q 038004 281 NLCLLAYGKTIYF 293 (330)
Q Consensus 281 ~v~vl~~G~iv~~ 293 (330)
+++.+.+|++.-.
T Consensus 334 ~~~~~~~~~~~~~ 346 (349)
T PRK14079 334 LTLRIEAGVFTPE 346 (349)
T ss_pred eEEEEeccEecCC
Confidence 9999999887533
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.64 E-value=4.9e-08 Score=108.94 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 207 NVRGVSGGQKRRVS----ICIE--------ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 207 ~~~~LSGGqrQRv~----IAra--------L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+..||||||||++ +|++ +..+|++|||||||+|||+.....++++|.++ +.++|++||.+
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 35799999999996 5755 55899999999999999999999999999776 68899999983
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.63 E-value=1.2e-07 Score=104.87 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=89.0
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
+++..+.++++||+|++|+|||||++++.+.+... ..|.+++++....... -.++...... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~----~~~~~~~~~~-----~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSM----EIYSSANPDD-----YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccch----hhcccccccc-----cchhH---
Confidence 46777889999999999999999999998766542 4688888753211100 0011100000 00000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 038004 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~ 250 (330)
....+.+.++++..++. +..+ ++.++| |..++-+|+||+- |.. ..+
T Consensus 266 ---------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 00112233444443331 1122 566666 4466778889984 433 334
Q ss_pred HHHHHHHh--cCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEEEEcChhhHHHHHHhCCC
Q 038004 251 KRIVNLAH--EDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTIYFGPASMTEQLFASNGF 308 (330)
Q Consensus 251 ~~L~~l~~--~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~ 308 (330)
+.|..... ..|.+||++|||. ..+... +|+++.+.. -+.++..++|....+
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444322 2488999999994 444443 576655431 123345666665444
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.61 E-value=4.3e-07 Score=87.71 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+|+++|-.+|++|++||+. |..+....++ .+ ..|..++.+.|-.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCC
Confidence 4677888999999999997 8777654433 23 4589999999973
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.53 E-value=3.7e-08 Score=86.23 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----cCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA----FGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~----~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ....++.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 57777654211 11245666665544555666665543
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.51 E-value=5.5e-06 Score=76.83 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=95.2
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+.+|+++.|.|++|+|||||+..++-..... .| ..+.|+.-+. +..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g-------------~~vl~iS~E~------~~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG-------------VRVGTISLEE------PVVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC-------------ceEEEEEccc------CHHHH
Confidence 45799988889999999999999999999998876543110 01 1122332211 11111
Q ss_pred HHHHHh------hcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEe
Q 038004 165 VYYSAQ------LQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLD 235 (330)
Q Consensus 165 l~~~~~------~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllD 235 (330)
+..... +..... ......+++..+++.+. .....- + + ....++ ...-+..++.++ .+|+++++|
T Consensus 75 ~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i--~-d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID 147 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDT-VFIYTLEEFDAAFDEFEGTGRLFM--Y-D-SFGEYS--MDSVLEKVRYMAVSHGIQHIIID 147 (271)
T ss_pred HHHHHHHHhCCCcccCCc-cccccHHHHHHHHHHhcCCCcEEE--E-c-CCCccC--HHHHHHHHHHHHhcCCceEEEEC
Confidence 111000 000000 00011122333343332 111100 0 0 011122 234445555554 479999999
Q ss_pred CCCCCCCH-------H-HHHHHHHHHHHHHhcCCceEEEEEcCch---------------------HHHHHhccEEEEEe
Q 038004 236 EPTSGLDS-------A-ASYHVMKRIVNLAHEDGITVVASIHQPS---------------------SDVFELFHNLCLLA 286 (330)
Q Consensus 236 EPtsgLD~-------~-~~~~i~~~L~~l~~~~g~tvi~itHd~~---------------------~~i~~~~d~v~vl~ 286 (330)
..+.-.+. . ....++..|+.++++.++||++++|--. ..+...||.|+.|.
T Consensus 148 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~ 227 (271)
T cd01122 148 NLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALE 227 (271)
T ss_pred CHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEE
Confidence 98664432 1 2456778888998889999999998421 14667889888886
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 228 r 228 (271)
T cd01122 228 R 228 (271)
T ss_pred e
Confidence 3
No 476
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.49 E-value=5.6e-06 Score=88.44 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 224 EILTRPKLLFLDEPTSGLD-SAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+..+|.++++|||...|| +..+..+.+.++.++ +.|..++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 3457899999999999999 888889999999986 56889999999964
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.45 E-value=4.3e-07 Score=90.78 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=46.5
Q ss_pred cCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCceEEEEEcCchH-------HHHHhccEEEEEeCCe
Q 038004 227 TRPKLLFLDEPTSGL---------DSAASYHVMKRIVNLAHEDGITVVASIHQPSS-------DVFELFHNLCLLAYGK 289 (330)
Q Consensus 227 ~~P~llllDEPtsgL---------D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~-------~i~~~~d~v~vl~~G~ 289 (330)
.+|+++++|.-++=. +.....+++..|.+++++.|.|+|+++|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 579999999876521 12345566777888888899999999996321 2577899999998654
No 478
>PRK08149 ATP synthase SpaL; Validated
Probab=98.43 E-value=4.5e-07 Score=89.50 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---------cccCcEEEEeCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---------LAFGTSAYVTQED 153 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---------~~~~~i~~v~Q~~ 153 (330)
+..+++++ +++.+||.++|+|+||+|||||+++|++...++...-|.|-.+|++.. ...+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 999999999999999999999999999988764323488888887642 1224678887654
No 479
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=9.5e-07 Score=91.52 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCC-----CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH--HHHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNT-----EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM--EAVYYSA 169 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-----~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~--e~l~~~~ 169 (330)
..+.++|+||||+|||||+++|.+..++.. ...+-|.++|.... +... .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------------~d~~~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------------WDPREVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------------CCHHHHhHHhcCC
Confidence 456799999999999999999999875321 01122444442210 0111 1111110
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
. .....+.+...++.+|+....... +.++||| +||||| +..||+..+..+
T Consensus 236 -------~-~~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------V-HDPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------c-cHHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 1 112223455668888987665554 4588999 999999 799999999999
Q ss_pred HHHHHH
Q 038004 250 MKRIVN 255 (330)
Q Consensus 250 ~~~L~~ 255 (330)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 998865
No 480
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.36 E-value=1.2e-06 Score=73.53 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 184 ERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEI-----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 184 ~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL-----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
..+.+.+..++.+-. ..++ ...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK-----~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTK-----ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEc-----hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345566666664311 1222 346789998887766653 3445655 99999999999988888764
No 481
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.34 E-value=8.1e-07 Score=78.24 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch-HHHHHhccEEEEEeCC
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS-SDVFELFHNLCLLAYG 288 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-~~i~~~~d~v~vl~~G 288 (330)
-|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+.. +.|.+|++.+|.+. ..+..+||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378999999999999999988887 7899999999999998875 34678999999852 1266789999998764
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=8.1e-07 Score=86.66 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=47.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEE-----------eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQ-----------ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~-----------~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.|+||++.||. .+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPN------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCC------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5899999999973 235786 9999999999999999999999999999998764
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.33 E-value=6.3e-07 Score=64.78 Aligned_cols=37 Identities=43% Similarity=0.629 Sum_probs=30.0
Q ss_pred EEeeEEEEeC-CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 88 LQELTGYVEP-GQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 88 L~~vsl~i~~-Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++..+.+.+ |.++.|.|+||||||||+.+|.=++-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4456677765 569999999999999999999876654
No 484
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=6.4e-06 Score=67.22 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEcCc
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----EDGITVVASIHQP 271 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~itHd~ 271 (330)
.+......+...++.+|++||.-.. +......+.+.+..... ..+..+|+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3445555666778999999998665 55666778888877643 2478999999864
No 485
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.30 E-value=1.6e-05 Score=69.63 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 038004 185 RAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS--ICIEILT-RPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258 (330)
Q Consensus 185 ~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~--IAraL~~-~P~llllDEPtsgLD~~~~~~i~~~L~~l~~ 258 (330)
.+.+.++..++.- ..-++ +..+++||+|++. +++.+-. ++++ .|+|++|......+++.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK-----~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTK-----ADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEEC-----cccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhc
Confidence 4555666666542 22222 3468999999987 5555543 3443 39999999999999999988764
No 486
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.30 E-value=3.5e-05 Score=82.48 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=49.7
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCceEEEEEcCchH--------HHHHhccEEEEEeCC
Q 038004 225 ILTRPKLLFLDEPTSGLD-SAASYHVMKRIVNLAHEDGITVVASIHQPSS--------DVFELFHNLCLLAYG 288 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~--------~i~~~~d~v~vl~~G 288 (330)
+-.+|+++++|||+.+|| +..+..+.+.++.++ +.|.+++++||++.. .+.+.|+..++|.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLR-KKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 345899999999999999 778889999999987 468999999999642 234556666666654
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.26 E-value=1.8e-06 Score=67.25 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=36.7
Q ss_pred CCCCCHHHHH-HHHHHHHH------hc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 208 VRGVSGGQKR-RVSICIEI------LT------RPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 208 ~~~LSGGqrQ-Rv~IAraL------~~------~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
...+||||+| .+.+|.++ .. .|.+++|||||++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3589999994 44444433 23 3899999999999999999999998864
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.25 E-value=1e-06 Score=87.14 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=52.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
.++.++++..+. .+..+++++ |.+.+||.++|+|+||+|||||+++|+|+..++ .|.|.+.|+
T Consensus 129 ~~~r~~v~~~l~------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLM------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeC------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECC
Confidence 466666666663 246799999 999999999999999999999999999998764 577777675
No 489
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.25 E-value=1.5e-06 Score=83.14 Aligned_cols=50 Identities=34% Similarity=0.399 Sum_probs=43.5
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 35799999 999999999999999999999999999998764 476666553
No 490
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.23 E-value=4.3e-06 Score=81.51 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=45.3
Q ss_pred cCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhcCCceEEEEEcCch-------HHHHHhccEEEEEeCC
Q 038004 227 TRPKLLFLDEPTS----GLD-----SAASYHVMKRIVNLAHEDGITVVASIHQPS-------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 227 ~~P~llllDEPts----gLD-----~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------~~i~~~~d~v~vl~~G 288 (330)
.+|+++++|+-.+ .+| ......++..|.+++++.+.++|++.|--. ..+.+++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 5899999999643 232 234456677788888888999999998421 1367899999998754
No 491
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.22 E-value=2.3e-06 Score=84.77 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=56.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe---ccc--------ccCcEEEEeCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK---ETL--------AFGTSAYVTQE 152 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~---~~~--------~~~~i~~v~Q~ 152 (330)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++ .|.+.+.|+. ... ......++++.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD---VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 46799999 999999999999999999999999999998763 5877775542 110 01234567777
Q ss_pred CCCCCCCCHH
Q 038004 153 DTLMTTLTVM 162 (330)
Q Consensus 153 ~~l~~~lTv~ 162 (330)
...+|.++..
T Consensus 208 ~s~~p~~~r~ 217 (422)
T TIGR02546 208 TSDRPSLERL 217 (422)
T ss_pred cccCCHHHHH
Confidence 7766655443
No 492
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.8e-06 Score=85.60 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=53.4
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------ccCcEEEEeCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AFGTSAYVTQEDT 154 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~~~i~~v~Q~~~ 154 (330)
..+++.+ |.+.+|+.++|+|+||+|||||+++|+|+.+++....|.|-++|++... .....++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4566666 9999999999999999999999999999988742234889899986521 1134677888654
No 493
>PRK01889 GTPase RsgA; Reviewed
Probab=98.19 E-value=2.3e-06 Score=83.10 Aligned_cols=74 Identities=30% Similarity=0.438 Sum_probs=55.1
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec--ccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE--TLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~--~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
++.+.-.+.+|++++|+|+||+|||||+++|+|...+ ..|+|.+++... ......+.+++|+..++.. ....++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~---~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc---ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 4455556789999999999999999999999999876 469999986432 1223468888988776654 333443
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.17 E-value=5.1e-06 Score=72.25 Aligned_cols=27 Identities=48% Similarity=0.887 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
|++++|+||||||||||++.|++++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998753
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.17 E-value=1.9e-06 Score=78.35 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=45.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccE----EEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGE----ILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~----I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
.+..++||.|+||||||||+++|++++++. .|. |.+++..... .....+++.+.. ....+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999999873 476 5555432211 112245555432 2345566665554433
No 496
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.16 E-value=2.5e-06 Score=84.62 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=45.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEcc
Confidence 46799999 999999999999999999999999999998764 588888885
No 497
>PLN02796 D-glycerate 3-kinase
Probab=98.16 E-value=5.3e-07 Score=86.43 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.3
Q ss_pred ceEEeeEEEE---eCCcE-----EEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 86 AILQELTGYV---EPGQI-----LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 86 ~iL~~vsl~i---~~Gei-----~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++.+.....|.|.++|...
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 5788888887 67776 999999999999999999999876322358888988654
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=98.16 E-value=2.3e-06 Score=82.42 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=29.2
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.|+.+ ..=|++|+++.|.|++|||||||+..++...
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 34443 3468899999999999999999999988643
No 499
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=1.9e-06 Score=86.96 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=52.6
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
+.|++..+ +...+++++++.+..|+.++|+||||||||||++.|.|++++ .+|++.+.+..+
T Consensus 187 ~~d~~~v~-------Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp---~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVI-------GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPD---LSNEEALESAAI 248 (506)
T ss_pred ccCeEEEE-------CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCC---CCCcEEEecchh
Confidence 34676665 345689999999999999999999999999999999999987 469988887654
No 500
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.15 E-value=1.2e-06 Score=78.49 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|++++|+|+||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998753
Done!