Query 038004
Match_columns 330
No_of_seqs 358 out of 3142
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 8.6E-58 2.9E-62 439.2 32.5 221 63-298 22-250 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 1.5E-56 5E-61 433.0 31.4 215 65-298 3-220 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-56 6.9E-61 429.2 30.0 216 65-299 4-226 (359)
4 3tif_A Uncharacterized ABC tra 100.0 3.4E-56 1.2E-60 405.7 27.4 221 65-298 1-231 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 2E-55 6.9E-60 409.3 26.8 218 64-299 6-231 (275)
6 1b0u_A Histidine permease; ABC 100.0 8.6E-55 2.9E-59 402.5 30.5 215 64-298 5-239 (262)
7 2it1_A 362AA long hypothetical 100.0 1.3E-54 4.4E-59 417.8 31.8 216 65-299 3-221 (362)
8 1z47_A CYSA, putative ABC-tran 100.0 1.3E-54 4.4E-59 416.6 31.2 219 63-299 12-233 (355)
9 2olj_A Amino acid ABC transpor 100.0 1.7E-54 5.8E-59 400.7 30.8 214 65-298 24-245 (263)
10 1g29_1 MALK, maltose transport 100.0 2.1E-54 7E-59 418.1 32.6 216 65-299 3-227 (372)
11 2yyz_A Sugar ABC transporter, 100.0 1.1E-54 3.6E-59 417.9 29.8 216 65-299 3-221 (359)
12 2pcj_A ABC transporter, lipopr 100.0 1.6E-54 5.3E-59 391.9 29.0 211 64-295 3-222 (224)
13 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-54 5.1E-59 416.5 29.9 216 65-299 3-228 (353)
14 1v43_A Sugar-binding transport 100.0 2.5E-54 8.4E-59 417.2 29.2 216 65-299 11-229 (372)
15 4g1u_C Hemin import ATP-bindin 100.0 2.5E-54 8.6E-59 400.2 27.4 215 64-299 10-235 (266)
16 1vpl_A ABC transporter, ATP-bi 100.0 1.2E-53 4E-58 393.7 29.9 216 64-299 14-233 (256)
17 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-53 3.7E-58 409.5 29.4 211 65-298 1-214 (348)
18 1g6h_A High-affinity branched- 100.0 3.5E-54 1.2E-58 397.3 24.4 218 64-298 6-239 (257)
19 1ji0_A ABC transporter; ATP bi 100.0 1.5E-53 5.2E-58 389.3 27.7 214 64-298 5-225 (240)
20 2onk_A Molybdate/tungstate ABC 100.0 7.5E-53 2.6E-57 384.8 25.7 209 66-298 2-213 (240)
21 2yz2_A Putative ABC transporte 100.0 2.4E-52 8.2E-57 386.9 24.5 219 65-299 2-225 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 4.8E-52 1.6E-56 381.5 25.0 216 65-297 3-229 (250)
23 2nq2_C Hypothetical ABC transp 100.0 4.1E-51 1.4E-55 376.1 29.5 211 65-299 4-215 (253)
24 2ihy_A ABC transporter, ATP-bi 100.0 2.8E-52 9.6E-57 389.0 21.7 220 63-299 19-250 (279)
25 2zu0_C Probable ATP-dependent 100.0 5.3E-51 1.8E-55 378.1 26.6 221 63-300 18-253 (267)
26 2ixe_A Antigen peptide transpo 100.0 1.4E-51 4.7E-56 382.9 21.5 217 64-299 15-243 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 7.6E-51 2.6E-55 373.0 24.6 211 65-297 7-228 (247)
28 3nh6_A ATP-binding cassette SU 100.0 1E-50 3.4E-55 382.8 25.2 211 65-299 53-275 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-50 7.8E-55 370.3 24.2 205 65-299 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.7E-50 5.7E-55 369.7 19.2 213 65-299 1-224 (243)
31 1sgw_A Putative ABC transporte 100.0 1.6E-50 5.6E-55 363.3 17.2 204 62-290 7-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 2.6E-49 8.9E-54 366.0 22.7 208 65-299 1-213 (263)
33 2ghi_A Transport protein; mult 100.0 4.4E-49 1.5E-53 363.9 22.9 213 64-299 16-240 (260)
34 3gd7_A Fusion complex of cysti 100.0 2.6E-49 8.8E-54 384.3 19.7 206 64-298 18-239 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.9E-48 6.5E-53 353.2 23.7 204 64-298 5-215 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.4E-48 4.9E-53 355.8 20.1 206 65-299 3-215 (237)
37 2yl4_A ATP-binding cassette SU 100.0 3.3E-46 1.1E-50 381.3 24.3 215 66-299 342-568 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 5.3E-46 1.8E-50 378.8 24.3 212 65-298 341-564 (582)
39 3b60_A Lipid A export ATP-bind 100.0 5.3E-46 1.8E-50 378.8 23.9 213 65-299 341-565 (582)
40 3qf4_A ABC transporter, ATP-bi 100.0 3.3E-46 1.1E-50 380.7 22.2 212 65-299 341-564 (587)
41 4a82_A Cystic fibrosis transme 100.0 3.9E-46 1.3E-50 379.5 21.6 212 65-299 339-562 (578)
42 2bbs_A Cystic fibrosis transme 100.0 8.5E-46 2.9E-50 346.9 19.8 200 64-299 39-245 (290)
43 3qf4_B Uncharacterized ABC tra 100.0 6.4E-46 2.2E-50 379.3 17.8 211 65-299 354-576 (598)
44 4f4c_A Multidrug resistance pr 100.0 8.8E-45 3E-49 398.8 18.4 215 65-299 1076-1302(1321)
45 4f4c_A Multidrug resistance pr 100.0 5.3E-43 1.8E-47 384.7 24.9 213 65-299 415-639 (1321)
46 3bk7_A ABC transporter ATP-bin 100.0 2.6E-42 9E-47 352.4 24.5 207 63-301 355-563 (607)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-42 5.3E-47 350.1 21.9 207 63-301 285-493 (538)
48 3g5u_A MCG1178, multidrug resi 100.0 2.5E-42 8.7E-47 378.4 25.3 213 65-299 387-611 (1284)
49 3ozx_A RNAse L inhibitor; ATP 100.0 4.4E-42 1.5E-46 346.5 22.1 207 63-299 267-475 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 4.1E-42 1.4E-46 376.7 21.0 215 65-299 1030-1256(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 3.4E-40 1.1E-44 336.6 19.6 202 69-300 350-558 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 9E-40 3.1E-44 329.9 13.4 194 66-288 21-234 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 9E-40 3.1E-44 333.8 13.4 190 69-288 95-304 (607)
54 2iw3_A Elongation factor 3A; a 100.0 4.2E-38 1.4E-42 333.2 25.4 197 64-299 434-633 (986)
55 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-39 1.6E-43 332.5 15.8 206 85-299 31-296 (670)
56 2iw3_A Elongation factor 3A; a 100.0 6.2E-39 2.1E-43 339.5 16.3 209 63-295 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.3E-37 1.1E-41 318.7 18.8 194 85-299 335-638 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 9.2E-36 3.2E-40 303.9 15.0 185 86-291 92-300 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 4E-35 1.4E-39 295.7 15.0 172 95-289 22-214 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 4.5E-34 1.5E-38 300.6 16.3 206 64-298 628-939 (972)
61 3pih_A Uvrabc system protein A 100.0 4.5E-33 1.5E-37 294.1 23.5 197 86-298 598-899 (916)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-33 4.1E-38 296.3 18.6 213 63-298 500-824 (842)
63 2ygr_A Uvrabc system protein A 100.0 3.6E-33 1.2E-37 294.7 19.1 207 64-299 646-958 (993)
64 4aby_A DNA repair protein RECN 100.0 1.5E-31 5E-36 260.5 20.1 203 86-294 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.9E-35 1E-39 291.5 -8.3 184 90-299 130-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 6.3E-28 2.2E-32 232.5 19.6 83 207-292 276-364 (365)
67 3b85_A Phosphate starvation-in 100.0 4.7E-32 1.6E-36 242.1 -12.1 142 82-271 10-158 (208)
68 4gp7_A Metallophosphoesterase; 99.9 7E-29 2.4E-33 214.2 4.9 146 90-276 1-163 (171)
69 1e69_A Chromosome segregation 99.9 5.8E-27 2E-31 221.9 13.9 87 207-297 216-309 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 4.2E-30 1.4E-34 251.0 -10.4 178 85-289 36-255 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 7.2E-31 2.5E-35 233.1 -16.5 181 84-286 8-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 5.7E-27 1.9E-31 204.2 4.0 144 100-293 2-160 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 9.5E-28 3.3E-32 225.7 -2.0 173 88-290 90-284 (302)
74 2v9p_A Replication protein E1; 99.9 8.3E-31 2.8E-35 246.5 -22.9 168 65-304 101-269 (305)
75 2og2_A Putative signal recogni 99.9 2E-26 6.8E-31 221.3 -0.9 172 89-290 148-341 (359)
76 1z6g_A Guanylate kinase; struc 99.9 6.4E-29 2.2E-33 222.8 -19.7 174 85-282 10-204 (218)
77 2dpy_A FLII, flagellum-specifi 99.9 2.4E-27 8.1E-32 233.5 -10.4 189 64-297 130-340 (438)
78 3aez_A Pantothenate kinase; tr 99.9 2.3E-28 7.8E-33 231.0 -20.1 181 65-289 43-246 (312)
79 3sop_A Neuronal-specific septi 99.9 4.6E-26 1.6E-30 211.0 -5.7 145 100-271 4-150 (270)
80 2o5v_A DNA replication and rep 99.9 4.1E-23 1.4E-27 198.3 13.9 83 207-298 261-353 (359)
81 1cr0_A DNA primase/helicase; R 99.9 1.5E-24 5E-29 202.2 2.1 184 85-290 22-237 (296)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 8.8E-25 3E-29 207.9 -0.4 129 87-289 160-291 (330)
83 3qkt_A DNA double-strand break 99.9 5.8E-22 2E-26 188.8 19.1 77 207-286 245-327 (339)
84 2jeo_A Uridine-cytidine kinase 99.9 1.6E-24 5.4E-29 197.1 -1.1 171 83-289 10-180 (245)
85 2o8b_B DNA mismatch repair pro 99.9 6.3E-24 2.2E-28 227.5 2.4 169 63-291 748-930 (1022)
86 4ad8_A DNA repair protein RECN 99.9 2E-22 6.7E-27 202.4 12.5 78 207-288 393-473 (517)
87 1tf7_A KAIC; homohexamer, hexa 99.9 8.1E-23 2.8E-27 205.5 8.6 156 92-289 275-444 (525)
88 3pih_A Uvrabc system protein A 99.9 2.1E-22 7.3E-27 212.9 11.3 161 114-299 384-558 (916)
89 2obl_A ESCN; ATPase, hydrolase 99.9 1.2E-24 4.2E-29 208.2 -5.8 190 64-297 44-251 (347)
90 1tf7_A KAIC; homohexamer, hexa 99.9 2.7E-25 9.1E-30 223.6 -14.7 166 84-287 24-209 (525)
91 3thx_A DNA mismatch repair pro 99.9 1.3E-22 4.6E-27 215.1 4.8 167 65-296 631-808 (934)
92 2r6f_A Excinuclease ABC subuni 99.8 6.5E-21 2.2E-25 200.9 15.2 130 157-299 450-598 (972)
93 4a74_A DNA repair and recombin 99.8 7.4E-23 2.5E-27 182.2 0.2 154 93-288 20-200 (231)
94 2ygr_A Uvrabc system protein A 99.8 9.6E-21 3.3E-25 200.2 13.2 132 155-299 465-615 (993)
95 3asz_A Uridine kinase; cytidin 99.8 4.7E-24 1.6E-28 188.6 -10.9 147 95-272 3-162 (211)
96 2ehv_A Hypothetical protein PH 99.8 3E-22 1E-26 180.4 -0.1 160 94-286 26-206 (251)
97 3thx_B DNA mismatch repair pro 99.8 3E-21 1E-25 204.3 6.1 145 84-281 659-804 (918)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.3E-20 8E-25 157.7 10.1 82 206-290 53-142 (148)
99 2qnr_A Septin-2, protein NEDD5 99.8 6.4E-23 2.2E-27 192.6 -7.2 163 69-272 2-168 (301)
100 2eyu_A Twitching motility prot 99.8 1.6E-21 5.3E-26 179.7 0.8 132 86-286 15-146 (261)
101 1rj9_A FTSY, signal recognitio 99.8 1.3E-21 4.3E-26 184.1 -1.4 147 97-271 101-258 (304)
102 1ewq_A DNA mismatch repair pro 99.8 5.9E-21 2E-25 199.1 3.1 134 84-279 565-704 (765)
103 1wb9_A DNA mismatch repair pro 99.8 5.8E-21 2E-25 200.1 2.5 154 84-291 594-748 (800)
104 2vf7_A UVRA2, excinuclease ABC 99.8 2.3E-19 7.8E-24 188.3 13.0 110 181-299 355-473 (842)
105 2w0m_A SSO2452; RECA, SSPF, un 99.8 1.2E-20 4.1E-25 167.5 1.9 170 85-288 9-192 (235)
106 1pzn_A RAD51, DNA repair and r 99.8 6.4E-21 2.2E-25 182.6 -1.0 168 86-295 118-309 (349)
107 3szr_A Interferon-induced GTP- 99.8 4.5E-22 1.5E-26 203.4 -10.1 189 65-298 10-234 (608)
108 1nlf_A Regulatory protein REPA 99.8 7E-19 2.4E-23 162.6 11.8 151 94-271 26-181 (279)
109 2i3b_A HCR-ntpase, human cance 99.7 4E-21 1.4E-25 168.8 -9.2 156 98-295 1-170 (189)
110 2qag_C Septin-7; cell cycle, c 99.7 5.5E-20 1.9E-24 179.9 -4.2 164 64-271 10-177 (418)
111 1pui_A ENGB, probable GTP-bind 99.7 6.1E-20 2.1E-24 161.1 -4.4 180 65-263 3-202 (210)
112 3jvv_A Twitching mobility prot 99.7 8.1E-19 2.8E-23 168.3 1.8 126 94-287 119-245 (356)
113 2cvh_A DNA repair and recombin 99.7 2.3E-17 7.9E-22 145.6 9.4 156 85-288 6-185 (220)
114 3kta_B Chromosome segregation 99.7 7.9E-17 2.7E-21 139.4 10.4 80 207-290 61-146 (173)
115 1s96_A Guanylate kinase, GMP k 99.7 1.1E-18 3.7E-23 156.6 -3.6 144 94-301 12-160 (219)
116 2bdt_A BH3686; alpha-beta prot 99.6 3.9E-21 1.3E-25 167.1 -22.1 170 98-297 2-180 (189)
117 2qag_B Septin-6, protein NEDD5 99.6 3.6E-18 1.2E-22 166.9 -4.3 187 65-270 16-218 (427)
118 1zp6_A Hypothetical protein AT 99.6 9.7E-19 3.3E-23 151.7 -10.2 141 94-257 5-148 (191)
119 2bbw_A Adenylate kinase 4, AK4 99.6 1.1E-18 3.9E-23 158.1 -11.3 151 97-259 26-199 (246)
120 2yhs_A FTSY, cell division pro 99.6 4.9E-17 1.7E-21 161.1 -0.9 153 88-270 283-448 (503)
121 3e70_C DPA, signal recognition 99.6 1.9E-16 6.6E-21 150.2 3.0 162 96-291 127-307 (328)
122 2ewv_A Twitching motility prot 99.6 8.2E-17 2.8E-21 155.3 0.3 127 87-283 127-254 (372)
123 2rcn_A Probable GTPase ENGC; Y 99.6 4.7E-16 1.6E-20 148.9 5.2 137 88-257 206-345 (358)
124 1lw7_A Transcriptional regulat 99.6 9.2E-18 3.1E-22 161.2 -6.8 170 87-286 157-342 (365)
125 1n0w_A DNA repair protein RAD5 99.6 1.2E-14 4.2E-19 129.9 13.7 153 93-288 19-209 (243)
126 2gza_A Type IV secretion syste 99.6 1.4E-16 4.8E-21 153.0 0.7 135 88-289 165-303 (361)
127 1nij_A Hypothetical protein YJ 99.6 1.7E-19 5.8E-24 170.4 -19.9 159 99-280 5-197 (318)
128 1htw_A HI0065; nucleotide-bind 99.6 1.6E-17 5.6E-22 141.6 -6.0 80 83-167 18-97 (158)
129 3auy_A DNA double-strand break 99.6 1.2E-14 4E-19 139.9 11.4 76 207-286 277-359 (371)
130 2qm8_A GTPase/ATPase; G protei 99.6 7.4E-19 2.5E-23 167.4 -18.2 175 65-258 29-260 (337)
131 1udx_A The GTP-binding protein 99.5 1.1E-16 3.8E-21 156.3 -3.7 148 88-269 147-306 (416)
132 1w1w_A Structural maintenance 99.5 2.5E-14 8.7E-19 140.0 10.3 77 208-287 331-411 (430)
133 2f1r_A Molybdopterin-guanine d 99.5 6.1E-17 2.1E-21 139.9 -7.6 136 99-259 3-162 (171)
134 1odf_A YGR205W, hypothetical 3 99.5 4.7E-16 1.6E-20 145.1 -3.3 133 96-244 29-168 (290)
135 2yv5_A YJEQ protein; hydrolase 99.5 1.2E-15 4.1E-20 143.0 -0.8 119 95-223 162-300 (302)
136 3lda_A DNA repair protein RAD5 99.5 8.7E-14 3E-18 135.2 11.9 155 93-289 173-364 (400)
137 1p9r_A General secretion pathw 99.5 7E-18 2.4E-22 165.0 -17.6 135 85-234 156-315 (418)
138 3ec2_A DNA replication protein 99.5 4.3E-15 1.5E-19 127.8 1.9 46 226-272 98-144 (180)
139 2kjq_A DNAA-related protein; s 99.5 1.3E-14 4.3E-19 122.3 3.4 96 86-271 29-125 (149)
140 1sxj_E Activator 1 40 kDa subu 99.5 4.4E-14 1.5E-18 133.7 5.8 144 100-282 38-185 (354)
141 2oap_1 GSPE-2, type II secreti 99.4 4.1E-16 1.4E-20 156.1 -14.1 178 85-280 247-458 (511)
142 1u0l_A Probable GTPase ENGC; p 99.4 7.2E-15 2.5E-19 137.6 -4.9 106 93-213 164-294 (301)
143 1in4_A RUVB, holliday junction 99.4 1.3E-15 4.5E-20 144.4 -10.9 169 83-281 29-211 (334)
144 3c8u_A Fructokinase; YP_612366 99.4 1.7E-15 5.8E-20 133.9 -9.7 155 95-289 19-174 (208)
145 1t9h_A YLOQ, probable GTPase E 99.3 5.7E-14 2E-18 131.9 -1.9 117 93-218 168-303 (307)
146 2x8a_A Nuclear valosin-contain 99.3 1.5E-16 5.2E-21 147.1 -20.7 141 84-253 32-190 (274)
147 1sq5_A Pantothenate kinase; P- 99.3 2.5E-15 8.6E-20 141.1 -13.5 138 65-243 37-199 (308)
148 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.9E-15 9.8E-20 145.2 -14.1 169 94-297 16-209 (392)
149 2r6a_A DNAB helicase, replicat 99.2 1.5E-11 5.2E-16 121.2 8.6 175 85-290 190-401 (454)
150 2dr3_A UPF0273 protein PH0284; 99.2 1.1E-10 3.9E-15 104.1 12.7 69 219-287 117-196 (247)
151 2ius_A DNA translocase FTSK; n 99.2 5.4E-13 1.9E-17 133.1 -3.7 176 90-284 159-361 (512)
152 1vma_A Cell division protein F 99.2 8.6E-12 2.9E-16 117.1 3.7 114 90-257 96-212 (306)
153 3euj_A Chromosome partition pr 99.1 1.2E-11 4E-16 122.7 3.6 50 85-138 17-66 (483)
154 1ls1_A Signal recognition part 99.1 1.5E-10 5.3E-15 107.9 9.7 142 66-268 77-219 (295)
155 2px0_A Flagellar biosynthesis 99.1 8.4E-11 2.9E-15 109.8 7.8 158 96-310 103-269 (296)
156 2zr9_A Protein RECA, recombina 99.1 8.6E-11 2.9E-15 112.2 7.2 148 94-295 57-237 (349)
157 3k1j_A LON protease, ATP-depen 99.1 1.2E-12 4.1E-17 133.6 -7.2 161 83-255 45-227 (604)
158 1iy2_A ATP-dependent metallopr 99.1 1.8E-14 6.2E-19 132.7 -18.9 138 66-237 50-194 (278)
159 1ixz_A ATP-dependent metallopr 99.1 2.4E-14 8.3E-19 129.8 -18.6 140 66-239 26-172 (254)
160 3tr0_A Guanylate kinase, GMP k 99.0 9.6E-12 3.3E-16 108.4 -2.6 68 92-166 1-73 (205)
161 1oix_A RAS-related protein RAB 99.0 3.3E-10 1.1E-14 98.0 4.1 38 217-256 152-189 (191)
162 3hr8_A Protein RECA; alpha and 99.0 2.6E-10 9E-15 109.0 3.8 31 94-124 57-87 (356)
163 1qhl_A Protein (cell division 98.9 4.7E-11 1.6E-15 107.4 -3.4 70 65-152 9-91 (227)
164 3lnc_A Guanylate kinase, GMP k 98.8 7.7E-10 2.6E-14 98.7 2.3 39 85-123 14-53 (231)
165 1svm_A Large T antigen; AAA+ f 98.8 8.5E-12 2.9E-16 120.3 -14.2 139 85-239 156-312 (377)
166 4eun_A Thermoresistant glucoki 98.7 2.5E-10 8.7E-15 99.7 -5.0 66 92-164 23-92 (200)
167 2qtf_A Protein HFLX, GTP-bindi 98.7 1.8E-09 6.3E-14 103.5 -0.1 149 100-258 181-353 (364)
168 2f9l_A RAB11B, member RAS onco 98.7 7.5E-09 2.6E-13 89.6 3.4 37 219-257 130-166 (199)
169 3nwj_A ATSK2; P loop, shikimat 98.7 9.5E-10 3.2E-14 100.2 -2.5 53 64-122 16-72 (250)
170 4a1f_A DNAB helicase, replicat 98.7 3.9E-08 1.3E-12 93.3 7.8 131 85-269 33-164 (338)
171 2ce7_A Cell division protein F 98.6 3.1E-08 1.1E-12 98.2 6.2 59 213-271 93-164 (476)
172 2e87_A Hypothetical protein PH 98.6 4.6E-08 1.6E-12 93.2 6.2 62 208-272 229-293 (357)
173 3kta_A Chromosome segregation 98.6 3.5E-08 1.2E-12 84.3 4.7 35 89-124 18-52 (182)
174 2dhr_A FTSH; AAA+ protein, hex 98.5 1.1E-10 3.8E-15 116.3 -13.6 128 85-239 53-187 (499)
175 2xau_A PRE-mRNA-splicing facto 98.5 7.9E-08 2.7E-12 100.6 7.2 72 208-281 188-261 (773)
176 3uie_A Adenylyl-sulfate kinase 98.5 2.9E-09 9.8E-14 93.0 -4.0 52 84-139 11-64 (200)
177 1jjv_A Dephospho-COA kinase; P 98.5 4.5E-08 1.5E-12 85.3 2.7 128 100-287 4-132 (206)
178 2j41_A Guanylate kinase; GMP, 98.5 8.3E-08 2.9E-12 83.1 4.0 32 93-124 1-32 (207)
179 3t34_A Dynamin-related protein 98.5 6E-07 2.1E-11 85.4 10.3 59 210-269 154-212 (360)
180 1zu4_A FTSY; GTPase, signal re 98.5 2.4E-08 8.2E-13 94.1 0.4 77 88-167 95-186 (320)
181 3a00_A Guanylate kinase, GMP k 98.5 4.2E-08 1.4E-12 84.6 1.9 27 98-124 1-27 (186)
182 3vaa_A Shikimate kinase, SK; s 98.4 8E-08 2.7E-12 83.6 3.4 39 84-122 11-49 (199)
183 1lvg_A Guanylate kinase, GMP k 98.4 4.2E-08 1.4E-12 85.7 1.5 57 221-287 116-173 (198)
184 4e22_A Cytidylate kinase; P-lo 98.4 2.5E-08 8.7E-13 90.4 -0.5 61 87-153 19-96 (252)
185 1fnn_A CDC6P, cell division co 98.4 1.6E-06 5.5E-11 82.0 10.3 44 227-271 124-169 (389)
186 1kgd_A CASK, peripheral plasma 98.3 1.9E-07 6.5E-12 80.0 3.2 36 97-134 4-39 (180)
187 2z43_A DNA repair and recombin 98.3 3E-06 1E-10 79.6 11.2 156 93-287 102-289 (324)
188 3bh0_A DNAB-like replicative h 98.3 1.3E-06 4.4E-11 81.8 8.5 134 85-270 55-190 (315)
189 1v5w_A DMC1, meiotic recombina 98.3 4.9E-06 1.7E-10 78.8 12.6 139 93-270 117-273 (343)
190 3b9p_A CG5977-PA, isoform A; A 98.3 6.1E-06 2.1E-10 75.6 12.8 74 212-285 97-186 (297)
191 1ega_A Protein (GTP-binding pr 98.3 5.4E-08 1.8E-12 90.7 -1.5 66 210-283 100-170 (301)
192 2vp4_A Deoxynucleoside kinase; 98.2 2.5E-07 8.7E-12 82.4 1.9 39 94-139 16-54 (230)
193 3tau_A Guanylate kinase, GMP k 98.2 6.8E-07 2.3E-11 78.4 3.9 29 96-124 6-34 (208)
194 1knq_A Gluconate kinase; ALFA/ 98.2 4.6E-07 1.6E-11 76.7 2.1 36 96-138 6-41 (175)
195 1rz3_A Hypothetical protein rb 98.1 4.4E-07 1.5E-11 79.1 0.3 41 95-138 19-59 (201)
196 2z4s_A Chromosomal replication 98.1 6.6E-07 2.3E-11 87.7 1.5 70 227-297 193-264 (440)
197 2qt1_A Nicotinamide riboside k 98.1 1.8E-06 6.1E-11 75.2 3.8 30 93-122 16-45 (207)
198 1w1w_A Structural maintenance 98.1 1.3E-06 4.5E-11 85.1 3.2 32 93-124 21-52 (430)
199 3tqc_A Pantothenate kinase; bi 98.0 2E-07 6.9E-12 87.8 -3.2 41 84-124 72-118 (321)
200 3cr8_A Sulfate adenylyltranfer 98.0 1E-06 3.4E-11 88.8 1.6 43 94-139 365-409 (552)
201 2q6t_A DNAB replication FORK h 98.0 6.8E-05 2.3E-09 73.3 14.6 173 85-287 187-397 (444)
202 1kag_A SKI, shikimate kinase I 98.0 2E-06 6.9E-11 72.3 2.6 27 97-123 3-29 (173)
203 2dy1_A Elongation factor G; tr 98.0 1.9E-06 6.4E-11 88.8 2.9 44 92-137 3-46 (665)
204 3ney_A 55 kDa erythrocyte memb 98.0 2.3E-06 7.8E-11 75.1 2.8 30 94-123 15-44 (197)
205 3kl4_A SRP54, signal recogniti 98.0 1.9E-05 6.5E-10 77.2 8.9 28 97-124 96-123 (433)
206 2qby_A CDC6 homolog 1, cell di 97.9 3.8E-06 1.3E-10 78.9 3.7 28 96-123 43-70 (386)
207 1ypw_A Transitional endoplasmi 97.9 5.2E-06 1.8E-10 87.3 5.0 31 93-123 233-263 (806)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.1E-06 2.8E-10 68.0 5.1 30 90-120 16-45 (149)
209 3cf0_A Transitional endoplasmi 97.9 1.9E-05 6.6E-10 73.0 7.2 29 94-122 45-73 (301)
210 2ffh_A Protein (FFH); SRP54, s 97.9 1.4E-05 4.8E-10 78.0 5.9 45 89-138 91-135 (425)
211 3lxx_A GTPase IMAP family memb 97.8 0.00018 6.2E-09 63.8 12.3 25 100-124 31-55 (239)
212 3ice_A Transcription terminati 97.8 1.9E-06 6.5E-11 82.9 -1.0 51 66-122 134-198 (422)
213 1u94_A RECA protein, recombina 97.8 0.00037 1.3E-08 66.3 14.9 75 217-291 128-235 (356)
214 2pez_A Bifunctional 3'-phospho 97.7 5.9E-06 2E-10 70.2 1.2 39 96-138 3-43 (179)
215 2p67_A LAO/AO transport system 97.7 1.4E-06 4.8E-11 82.4 -3.7 50 84-136 42-91 (341)
216 3llm_A ATP-dependent RNA helic 97.7 4.6E-06 1.6E-10 74.3 -0.1 151 96-280 74-228 (235)
217 3qks_A DNA double-strand break 97.7 3.8E-05 1.3E-09 67.1 5.1 29 90-119 16-44 (203)
218 2i1q_A DNA repair and recombin 97.6 0.00036 1.2E-08 64.9 11.7 165 93-288 93-291 (322)
219 1cke_A CK, MSSA, protein (cyti 97.6 2.3E-05 7.9E-10 68.7 3.2 56 98-153 5-74 (227)
220 4eaq_A DTMP kinase, thymidylat 97.6 2.1E-05 7.2E-10 70.2 2.9 37 87-123 12-51 (229)
221 3h4m_A Proteasome-activating n 97.6 0.00016 5.5E-09 65.6 8.3 27 96-122 49-75 (285)
222 3m6a_A ATP-dependent protease 97.6 6.8E-06 2.3E-10 82.6 -1.1 48 85-136 96-143 (543)
223 1y63_A LMAJ004144AAA protein; 97.6 3.1E-05 1.1E-09 66.2 2.9 32 90-121 2-33 (184)
224 1mky_A Probable GTP-binding pr 97.5 8.3E-05 2.8E-09 72.5 5.7 152 100-259 182-355 (439)
225 3auy_A DNA double-strand break 97.5 8.4E-05 2.9E-09 70.9 5.6 31 88-119 16-46 (371)
226 2qor_A Guanylate kinase; phosp 97.5 4.2E-05 1.4E-09 66.4 3.0 28 95-122 9-36 (204)
227 2www_A Methylmalonic aciduria 97.5 2.6E-05 8.9E-10 74.0 1.7 38 96-136 72-109 (349)
228 1m7g_A Adenylylsulfate kinase; 97.5 2.5E-05 8.4E-10 68.3 1.2 41 94-137 21-63 (211)
229 2if2_A Dephospho-COA kinase; a 97.5 5E-05 1.7E-09 65.6 2.9 21 100-120 3-23 (204)
230 1m2o_B GTP-binding protein SAR 97.4 0.00012 4.1E-09 62.5 5.1 35 86-121 12-46 (190)
231 2gj8_A MNME, tRNA modification 97.4 8E-05 2.7E-09 62.6 3.3 27 96-122 2-28 (172)
232 1np6_A Molybdopterin-guanine d 97.4 6.4E-05 2.2E-09 64.4 2.3 38 99-136 7-44 (174)
233 1q57_A DNA primase/helicase; d 97.3 0.0072 2.5E-07 59.7 17.2 69 217-286 341-440 (503)
234 2p5t_B PEZT; postsegregational 97.3 9.8E-05 3.3E-09 66.5 2.8 40 94-138 28-67 (253)
235 3t61_A Gluconokinase; PSI-biol 97.3 0.00011 3.8E-09 63.4 2.8 25 98-122 18-42 (202)
236 2yvu_A Probable adenylyl-sulfa 97.2 0.00014 4.8E-09 61.9 3.3 29 96-124 11-39 (186)
237 2qag_A Septin-2, protein NEDD5 97.2 1.9E-05 6.6E-10 75.2 -2.5 46 65-123 17-62 (361)
238 2ga8_A Hypothetical 39.9 kDa p 97.2 2.4E-05 8.1E-10 74.5 -1.8 37 86-122 10-48 (359)
239 3d8b_A Fidgetin-like protein 1 97.2 0.002 6.9E-08 60.8 11.5 27 96-122 115-141 (357)
240 1xp8_A RECA protein, recombina 97.2 0.004 1.4E-07 59.4 13.6 27 94-120 70-96 (366)
241 3cm0_A Adenylate kinase; ATP-b 97.2 0.00013 4.6E-09 61.7 2.9 26 96-121 2-27 (186)
242 1sxj_C Activator 1 40 kDa subu 97.2 2.5E-05 8.7E-10 73.3 -1.8 41 84-124 30-72 (340)
243 2wji_A Ferrous iron transport 97.2 0.00017 5.9E-09 59.8 3.3 23 100-122 5-27 (165)
244 1q3t_A Cytidylate kinase; nucl 97.2 0.0002 6.7E-09 63.6 3.4 27 96-122 14-40 (236)
245 2v1u_A Cell division control p 97.2 0.00027 9.3E-09 66.2 4.5 27 96-122 42-68 (387)
246 1qhx_A CPT, protein (chloramph 97.2 0.00023 7.7E-09 59.8 3.5 26 98-123 3-28 (178)
247 3kb2_A SPBC2 prophage-derived 97.1 0.00023 7.8E-09 59.1 3.2 23 100-122 3-25 (173)
248 1lv7_A FTSH; alpha/beta domain 97.1 0.00014 4.8E-09 65.1 1.7 34 88-123 37-70 (257)
249 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.0018 6.1E-08 57.5 9.0 27 96-122 37-63 (262)
250 1f6b_A SAR1; gtpases, N-termin 97.1 3.9E-05 1.3E-09 66.1 -2.2 36 85-121 13-48 (198)
251 3cmw_A Protein RECA, recombina 97.1 0.0015 5.1E-08 73.2 9.9 29 94-122 728-756 (1706)
252 1j8m_F SRP54, signal recogniti 97.0 5.7E-05 2E-09 70.1 -1.3 45 89-137 89-134 (297)
253 2wjg_A FEOB, ferrous iron tran 97.0 0.00032 1.1E-08 59.0 3.3 22 100-121 9-30 (188)
254 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00031 1.1E-08 67.8 3.6 43 94-136 18-68 (396)
255 2zej_A Dardarin, leucine-rich 97.0 0.00028 9.4E-09 59.7 2.7 23 100-122 4-26 (184)
256 1kht_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 58.8 3.4 26 97-122 2-27 (192)
257 3lw7_A Adenylate kinase relate 97.0 0.00037 1.3E-08 57.6 3.0 19 100-118 3-21 (179)
258 2ze6_A Isopentenyl transferase 97.0 0.00034 1.2E-08 63.1 3.0 23 100-122 3-25 (253)
259 3bgw_A DNAB-like replicative h 96.9 0.0014 4.8E-08 64.1 7.5 35 86-120 185-219 (444)
260 3r20_A Cytidylate kinase; stru 96.9 0.0004 1.4E-08 62.2 3.2 25 98-122 9-33 (233)
261 3io5_A Recombination and repai 96.9 0.0042 1.4E-07 58.2 10.2 58 213-270 92-171 (333)
262 2rhm_A Putative kinase; P-loop 96.9 0.00045 1.5E-08 58.6 3.3 26 96-121 3-28 (193)
263 3trf_A Shikimate kinase, SK; a 96.9 0.0005 1.7E-08 58.1 3.5 26 97-122 4-29 (185)
264 1vht_A Dephospho-COA kinase; s 96.9 0.00048 1.6E-08 60.0 3.4 24 97-120 3-26 (218)
265 1gvn_B Zeta; postsegregational 96.9 0.00052 1.8E-08 63.2 3.4 36 96-136 31-66 (287)
266 2jaq_A Deoxyguanosine kinase; 96.8 0.00055 1.9E-08 58.4 3.2 23 100-122 2-24 (205)
267 3iij_A Coilin-interacting nucl 96.8 0.00056 1.9E-08 57.7 3.0 26 96-121 9-34 (180)
268 1ex7_A Guanylate kinase; subst 96.8 0.00057 1.9E-08 59.1 3.0 23 100-122 3-25 (186)
269 1gtv_A TMK, thymidylate kinase 96.8 0.00035 1.2E-08 60.3 1.7 24 100-123 2-25 (214)
270 1ly1_A Polynucleotide kinase; 96.8 0.00064 2.2E-08 56.8 3.2 22 99-120 3-24 (181)
271 1via_A Shikimate kinase; struc 96.8 0.00058 2E-08 57.4 3.0 23 100-122 6-28 (175)
272 1uf9_A TT1252 protein; P-loop, 96.8 0.00065 2.2E-08 58.0 3.3 24 98-121 8-31 (203)
273 2v54_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 57.8 3.6 26 97-122 3-28 (204)
274 2plr_A DTMP kinase, probable t 96.7 0.00078 2.7E-08 57.8 3.5 27 97-123 3-29 (213)
275 2c95_A Adenylate kinase 1; tra 96.7 0.00073 2.5E-08 57.4 3.2 27 96-122 7-33 (196)
276 2wwf_A Thymidilate kinase, put 96.7 0.00078 2.7E-08 58.0 3.5 27 96-122 8-34 (212)
277 1nn5_A Similar to deoxythymidy 96.7 0.0009 3.1E-08 57.7 3.5 27 96-122 7-33 (215)
278 3k53_A Ferrous iron transport 96.7 0.00073 2.5E-08 61.2 2.9 47 237-284 144-190 (271)
279 1tev_A UMP-CMP kinase; ploop, 96.7 0.00094 3.2E-08 56.4 3.3 24 98-121 3-26 (196)
280 3cmw_A Protein RECA, recombina 96.6 0.019 6.5E-07 64.5 14.3 150 86-289 369-553 (1706)
281 1nks_A Adenylate kinase; therm 96.6 0.00093 3.2E-08 56.3 3.1 23 100-122 3-25 (194)
282 3ake_A Cytidylate kinase; CMP 96.6 0.00098 3.4E-08 57.1 3.1 23 100-122 4-26 (208)
283 2vli_A Antibiotic resistance p 96.6 0.00084 2.9E-08 56.4 2.4 26 97-122 4-29 (183)
284 1xjc_A MOBB protein homolog; s 96.5 0.0011 3.9E-08 56.3 3.1 25 99-123 5-29 (169)
285 2bwj_A Adenylate kinase 5; pho 96.5 0.0013 4.5E-08 55.9 3.2 27 96-122 10-36 (199)
286 2z0h_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 55.7 3.2 23 100-122 2-24 (197)
287 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 56.8 3.5 26 97-122 3-28 (220)
288 1zuh_A Shikimate kinase; alpha 96.5 0.0015 5.1E-08 54.3 3.3 24 99-122 8-31 (168)
289 2ged_A SR-beta, signal recogni 96.4 0.0013 4.5E-08 55.4 2.8 23 100-122 50-72 (193)
290 1ko7_A HPR kinase/phosphatase; 96.4 0.0026 9E-08 59.4 4.9 37 84-121 131-167 (314)
291 1z2a_A RAS-related protein RAB 96.4 0.0015 5.1E-08 53.3 2.8 23 100-122 7-29 (168)
292 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 5.7E-08 57.0 3.3 27 96-122 5-31 (227)
293 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.8E-08 56.2 3.2 22 100-121 2-23 (216)
294 2cdn_A Adenylate kinase; phosp 96.4 0.002 6.7E-08 55.3 3.6 26 97-122 19-44 (201)
295 2nzj_A GTP-binding protein REM 96.4 0.0017 5.8E-08 53.5 3.0 23 100-122 6-28 (175)
296 2pbr_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 54.7 3.2 23 100-122 2-24 (195)
297 2iyv_A Shikimate kinase, SK; t 96.4 0.0015 5E-08 55.2 2.6 24 99-122 3-26 (184)
298 1e6c_A Shikimate kinase; phosp 96.4 0.0015 5.1E-08 54.3 2.6 24 99-122 3-26 (173)
299 2erx_A GTP-binding protein DI- 96.4 0.0018 6.1E-08 53.0 3.0 23 100-122 5-27 (172)
300 3q72_A GTP-binding protein RAD 96.4 0.0014 4.8E-08 53.5 2.4 23 101-123 5-27 (166)
301 2ce2_X GTPase HRAS; signaling 96.4 0.0016 5.5E-08 52.7 2.7 23 100-122 5-27 (166)
302 3b1v_A Ferrous iron uptake tra 96.3 0.0027 9.3E-08 57.9 4.5 23 100-122 5-27 (272)
303 1u8z_A RAS-related protein RAL 96.3 0.0018 6E-08 52.7 2.8 23 100-122 6-28 (168)
304 1kao_A RAP2A; GTP-binding prot 96.3 0.0018 6.1E-08 52.6 2.8 23 100-122 5-27 (167)
305 3cmu_A Protein RECA, recombina 96.3 0.012 4.2E-07 66.8 10.4 73 217-289 448-553 (2050)
306 2dyk_A GTP-binding protein; GT 96.3 0.0018 6.1E-08 52.5 2.8 23 100-122 3-25 (161)
307 3q85_A GTP-binding protein REM 96.3 0.002 6.7E-08 52.8 3.1 22 101-122 5-26 (169)
308 1ukz_A Uridylate kinase; trans 96.3 0.0021 7.1E-08 55.1 3.3 25 98-122 15-39 (203)
309 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0012 4.1E-08 63.1 2.0 60 227-287 261-334 (392)
310 1qf9_A UMP/CMP kinase, protein 96.3 0.0019 6.6E-08 54.3 3.1 24 98-121 6-29 (194)
311 2pt5_A Shikimate kinase, SK; a 96.3 0.0021 7.1E-08 53.2 3.2 22 100-121 2-23 (168)
312 1zak_A Adenylate kinase; ATP:A 96.3 0.0018 6E-08 56.6 2.8 26 97-122 4-29 (222)
313 3dl0_A Adenylate kinase; phosp 96.3 0.0021 7.1E-08 55.7 3.2 23 100-122 2-24 (216)
314 1z0j_A RAB-22, RAS-related pro 96.3 0.0019 6.6E-08 52.8 2.8 23 100-122 8-30 (170)
315 1svi_A GTP-binding protein YSX 96.3 0.0019 6.5E-08 54.4 2.8 23 100-122 25-47 (195)
316 1ek0_A Protein (GTP-binding pr 96.3 0.002 6.8E-08 52.6 2.8 22 101-122 6-27 (170)
317 1g16_A RAS-related protein SEC 96.3 0.0019 6.4E-08 52.8 2.7 22 101-122 6-27 (170)
318 3lxw_A GTPase IMAP family memb 96.3 0.002 6.8E-08 57.7 3.1 24 100-123 23-46 (247)
319 1z08_A RAS-related protein RAB 96.3 0.002 6.7E-08 52.8 2.8 23 100-122 8-30 (170)
320 1c1y_A RAS-related protein RAP 96.3 0.002 6.9E-08 52.5 2.8 23 100-122 5-27 (167)
321 3pqc_A Probable GTP-binding pr 96.3 0.002 6.7E-08 54.1 2.8 23 100-122 25-47 (195)
322 3tw8_B RAS-related protein RAB 96.3 0.0018 6.1E-08 53.5 2.5 23 100-122 11-33 (181)
323 3ihw_A Centg3; RAS, centaurin, 96.3 0.0052 1.8E-07 51.8 5.5 22 100-121 22-43 (184)
324 1fzq_A ADP-ribosylation factor 96.3 0.0017 5.8E-08 54.6 2.4 22 100-121 18-39 (181)
325 1uj2_A Uridine-cytidine kinase 96.2 0.0022 7.5E-08 57.4 3.2 24 99-122 23-46 (252)
326 1ky3_A GTP-binding protein YPT 96.2 0.002 7E-08 53.2 2.8 23 100-122 10-32 (182)
327 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0021 7.2E-08 53.1 2.8 23 100-122 9-31 (177)
328 2fn4_A P23, RAS-related protei 96.2 0.002 6.9E-08 53.2 2.7 23 100-122 11-33 (181)
329 1jal_A YCHF protein; nucleotid 96.2 0.0036 1.2E-07 59.6 4.7 39 98-136 2-48 (363)
330 3bos_A Putative DNA replicatio 96.2 0.0027 9.4E-08 55.1 3.6 26 97-122 51-76 (242)
331 2lkc_A Translation initiation 96.2 0.003 1E-07 52.1 3.7 26 97-122 7-32 (178)
332 2grj_A Dephospho-COA kinase; T 96.2 0.0025 8.6E-08 55.1 3.2 23 99-121 13-35 (192)
333 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0026 9E-08 57.3 3.5 25 97-121 3-27 (260)
334 2cxx_A Probable GTP-binding pr 96.2 0.0023 7.7E-08 53.5 2.8 22 101-122 4-25 (190)
335 1r2q_A RAS-related protein RAB 96.2 0.0025 8.4E-08 52.0 2.8 22 100-121 8-29 (170)
336 3clv_A RAB5 protein, putative; 96.1 0.0024 8.2E-08 53.6 2.8 23 100-122 9-31 (208)
337 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0025 8.5E-08 53.1 2.8 23 100-122 6-28 (189)
338 3bc1_A RAS-related protein RAB 96.1 0.0025 8.7E-08 53.1 2.8 23 100-122 13-35 (195)
339 2oil_A CATX-8, RAS-related pro 96.1 0.0026 8.8E-08 53.7 2.8 23 100-122 27-49 (193)
340 4fcw_A Chaperone protein CLPB; 96.1 0.0027 9.3E-08 57.9 3.2 26 99-124 48-73 (311)
341 1upt_A ARL1, ADP-ribosylation 96.1 0.0027 9.1E-08 52.0 2.8 22 100-121 9-30 (171)
342 2hxs_A RAB-26, RAS-related pro 96.1 0.0029 9.9E-08 52.3 3.1 23 100-122 8-30 (178)
343 3tlx_A Adenylate kinase 2; str 96.1 0.0031 1.1E-07 56.2 3.4 25 97-121 28-52 (243)
344 3t5d_A Septin-7; GTP-binding p 96.1 0.0022 7.6E-08 58.1 2.4 23 100-122 10-32 (274)
345 1r8s_A ADP-ribosylation factor 96.1 0.0028 9.6E-08 51.6 2.8 21 101-121 3-23 (164)
346 3dm5_A SRP54, signal recogniti 96.1 0.081 2.8E-06 51.6 13.6 27 97-123 99-125 (443)
347 2y8e_A RAB-protein 6, GH09086P 96.1 0.0027 9.3E-08 52.3 2.7 23 100-122 16-38 (179)
348 1moz_A ARL1, ADP-ribosylation 96.1 0.0017 6E-08 54.0 1.5 22 99-120 19-40 (183)
349 3iby_A Ferrous iron transport 96.1 0.0028 9.5E-08 57.2 2.9 23 100-122 3-25 (256)
350 2a9k_A RAS-related protein RAL 96.0 0.0029 1E-07 52.5 2.8 23 100-122 20-42 (187)
351 3t1o_A Gliding protein MGLA; G 96.0 0.0029 1E-07 53.0 2.8 24 100-123 16-39 (198)
352 1wf3_A GTP-binding protein; GT 96.0 0.0032 1.1E-07 58.3 3.3 23 100-122 9-31 (301)
353 2g6b_A RAS-related protein RAB 96.0 0.003 1E-07 52.3 2.8 23 100-122 12-34 (180)
354 1z0f_A RAB14, member RAS oncog 96.0 0.003 1E-07 52.0 2.8 23 100-122 17-39 (179)
355 2f6r_A COA synthase, bifunctio 96.0 0.003 1E-07 57.7 3.1 22 99-120 76-97 (281)
356 3con_A GTPase NRAS; structural 96.0 0.003 1E-07 53.0 2.8 23 100-122 23-45 (190)
357 4dhe_A Probable GTP-binding pr 96.0 0.0022 7.4E-08 55.4 1.9 23 100-122 31-53 (223)
358 1jbk_A CLPB protein; beta barr 96.0 0.004 1.4E-07 51.6 3.5 26 97-122 42-67 (195)
359 1a7j_A Phosphoribulokinase; tr 96.0 0.0017 5.8E-08 59.8 1.2 26 97-122 4-29 (290)
360 2dby_A GTP-binding protein; GD 96.0 0.0029 9.9E-08 60.4 2.8 21 101-121 4-24 (368)
361 3a8t_A Adenylate isopentenyltr 96.0 0.0055 1.9E-07 57.8 4.7 26 97-122 39-64 (339)
362 2w58_A DNAI, primosome compone 96.0 0.0038 1.3E-07 53.4 3.3 24 99-122 55-78 (202)
363 2xb4_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 54.9 3.2 22 100-121 2-23 (223)
364 2efe_B Small GTP-binding prote 96.0 0.0033 1.1E-07 52.0 2.8 23 100-122 14-36 (181)
365 2bme_A RAB4A, RAS-related prot 95.9 0.0033 1.1E-07 52.4 2.7 23 100-122 12-34 (186)
366 2bov_A RAla, RAS-related prote 95.9 0.0034 1.2E-07 53.2 2.8 23 100-122 16-38 (206)
367 1nrj_B SR-beta, signal recogni 95.9 0.0035 1.2E-07 54.0 2.8 23 100-122 14-36 (218)
368 2xtp_A GTPase IMAP family memb 95.9 0.0035 1.2E-07 56.0 2.9 23 100-122 24-46 (260)
369 3be4_A Adenylate kinase; malar 95.9 0.0039 1.3E-07 54.3 3.2 26 97-122 4-29 (217)
370 2gf9_A RAS-related protein RAB 95.9 0.0036 1.2E-07 52.6 2.8 23 100-122 24-46 (189)
371 3iev_A GTP-binding protein ERA 95.9 0.004 1.4E-07 57.7 3.3 23 100-122 12-34 (308)
372 2gf0_A GTP-binding protein DI- 95.9 0.0035 1.2E-07 52.8 2.7 23 100-122 10-32 (199)
373 3tkl_A RAS-related protein RAB 95.9 0.0037 1.3E-07 52.5 2.8 23 100-122 18-40 (196)
374 1vg8_A RAS-related protein RAB 95.9 0.0037 1.3E-07 53.1 2.8 23 100-122 10-32 (207)
375 3kkq_A RAS-related protein M-R 95.9 0.0039 1.3E-07 51.9 2.8 23 100-122 20-42 (183)
376 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0037 1.3E-07 52.4 2.7 23 100-122 9-31 (184)
377 3cbq_A GTP-binding protein REM 95.9 0.0029 9.9E-08 54.0 2.0 22 100-121 25-46 (195)
378 1e4v_A Adenylate kinase; trans 95.9 0.0043 1.5E-07 53.8 3.1 22 100-121 2-23 (214)
379 3a1s_A Iron(II) transport prot 95.9 0.004 1.4E-07 56.1 3.0 23 100-122 7-29 (258)
380 2fg5_A RAB-22B, RAS-related pr 95.9 0.0037 1.3E-07 52.8 2.7 23 100-122 25-47 (192)
381 3i8s_A Ferrous iron transport 95.9 0.0038 1.3E-07 56.7 2.9 23 100-122 5-27 (274)
382 1ksh_A ARF-like protein 2; sma 95.8 0.0039 1.3E-07 52.1 2.7 25 98-122 18-42 (186)
383 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0041 1.4E-07 51.6 2.8 22 100-121 7-28 (186)
384 2qmh_A HPR kinase/phosphorylas 95.8 0.0063 2.2E-07 53.2 4.1 36 86-122 23-58 (205)
385 1zbd_A Rabphilin-3A; G protein 95.8 0.0044 1.5E-07 52.6 3.1 23 100-122 10-32 (203)
386 1ltq_A Polynucleotide kinase; 95.8 0.0044 1.5E-07 56.5 3.2 22 99-120 3-24 (301)
387 2wsm_A Hydrogenase expression/ 95.8 0.0043 1.5E-07 53.6 2.9 24 99-122 31-54 (221)
388 3oes_A GTPase rhebl1; small GT 95.8 0.004 1.4E-07 53.0 2.7 23 100-122 26-48 (201)
389 3d3q_A TRNA delta(2)-isopenten 95.8 0.0047 1.6E-07 58.3 3.2 24 99-122 8-31 (340)
390 1z06_A RAS-related protein RAB 95.8 0.0044 1.5E-07 52.1 2.8 23 100-122 22-44 (189)
391 3t5g_A GTP-binding protein RHE 95.8 0.0043 1.5E-07 51.5 2.7 22 100-121 8-29 (181)
392 3dz8_A RAS-related protein RAB 95.8 0.0043 1.5E-07 52.3 2.7 23 100-122 25-47 (191)
393 2il1_A RAB12; G-protein, GDP, 95.8 0.0041 1.4E-07 52.7 2.5 23 100-122 28-50 (192)
394 2o52_A RAS-related protein RAB 95.8 0.0047 1.6E-07 52.7 2.9 23 100-122 27-49 (200)
395 2a5j_A RAS-related protein RAB 95.8 0.0046 1.6E-07 52.1 2.8 23 100-122 23-45 (191)
396 2cjw_A GTP-binding protein GEM 95.8 0.0046 1.6E-07 52.6 2.8 22 100-121 8-29 (192)
397 1zj6_A ADP-ribosylation factor 95.7 0.0048 1.7E-07 51.7 2.9 22 100-121 18-39 (187)
398 3bwd_D RAC-like GTP-binding pr 95.7 0.0048 1.6E-07 51.1 2.8 23 100-122 10-32 (182)
399 2p65_A Hypothetical protein PF 95.7 0.0051 1.7E-07 51.0 3.0 26 97-122 42-67 (187)
400 1ak2_A Adenylate kinase isoenz 95.7 0.006 2E-07 53.8 3.6 26 97-122 15-40 (233)
401 1jwy_B Dynamin A GTPase domain 95.7 0.005 1.7E-07 56.4 3.1 23 100-122 26-48 (315)
402 2ew1_A RAS-related protein RAB 95.7 0.0046 1.6E-07 53.2 2.7 23 100-122 28-50 (201)
403 2h17_A ADP-ribosylation factor 95.7 0.0045 1.5E-07 51.7 2.5 22 100-121 23-44 (181)
404 3reg_A RHO-like small GTPase; 95.7 0.005 1.7E-07 52.0 2.8 23 100-122 25-47 (194)
405 1zd9_A ADP-ribosylation factor 95.7 0.005 1.7E-07 51.9 2.8 23 100-122 24-46 (188)
406 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0047 1.6E-07 52.7 2.7 23 100-122 10-32 (206)
407 1x3s_A RAS-related protein RAB 95.7 0.005 1.7E-07 51.6 2.8 23 100-122 17-39 (195)
408 2h57_A ADP-ribosylation factor 95.7 0.0036 1.2E-07 52.7 1.9 23 100-122 23-45 (190)
409 1l8q_A Chromosomal replication 95.7 0.0041 1.4E-07 57.4 2.5 43 227-270 97-140 (324)
410 3cph_A RAS-related protein SEC 95.7 0.005 1.7E-07 52.5 2.8 23 100-122 22-44 (213)
411 3zvl_A Bifunctional polynucleo 95.7 0.0051 1.8E-07 59.4 3.2 26 96-121 256-281 (416)
412 2qu8_A Putative nucleolar GTP- 95.7 0.0047 1.6E-07 53.9 2.7 22 100-121 31-52 (228)
413 2atv_A RERG, RAS-like estrogen 95.7 0.0051 1.7E-07 52.1 2.8 23 100-122 30-52 (196)
414 4bas_A ADP-ribosylation factor 95.7 0.0047 1.6E-07 52.0 2.6 23 100-122 19-41 (199)
415 2p5s_A RAS and EF-hand domain 95.7 0.0052 1.8E-07 52.2 2.8 23 100-122 30-52 (199)
416 2iwr_A Centaurin gamma 1; ANK 95.6 0.0045 1.5E-07 51.2 2.3 23 100-122 9-31 (178)
417 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0064 2.2E-07 59.8 3.7 36 86-122 140-175 (473)
418 4edh_A DTMP kinase, thymidylat 95.6 0.0066 2.2E-07 53.3 3.5 28 96-123 4-31 (213)
419 2f7s_A C25KG, RAS-related prot 95.6 0.0057 1.9E-07 52.6 3.0 23 100-122 27-49 (217)
420 3cmu_A Protein RECA, recombina 95.6 0.021 7.2E-07 65.0 8.2 36 87-122 719-756 (2050)
421 2h92_A Cytidylate kinase; ross 95.6 0.0055 1.9E-07 53.1 2.9 25 98-122 3-27 (219)
422 2fv8_A H6, RHO-related GTP-bin 95.6 0.0053 1.8E-07 52.6 2.7 23 100-122 27-49 (207)
423 2q3h_A RAS homolog gene family 95.6 0.0063 2.1E-07 51.6 3.1 23 100-122 22-44 (201)
424 2aka_B Dynamin-1; fusion prote 95.6 0.0055 1.9E-07 55.6 2.8 23 100-122 28-50 (299)
425 2j1l_A RHO-related GTP-binding 95.6 0.0061 2.1E-07 52.6 2.9 22 100-121 36-57 (214)
426 3llu_A RAS-related GTP-binding 95.6 0.0063 2.1E-07 51.7 2.9 24 100-123 22-45 (196)
427 3lv8_A DTMP kinase, thymidylat 95.5 0.0072 2.5E-07 54.0 3.4 27 97-123 26-52 (236)
428 1gwn_A RHO-related GTP-binding 95.5 0.0058 2E-07 52.7 2.7 23 100-122 30-52 (205)
429 3crm_A TRNA delta(2)-isopenten 95.5 0.0065 2.2E-07 56.9 3.2 24 99-122 6-29 (323)
430 3exa_A TRNA delta(2)-isopenten 95.5 0.0072 2.5E-07 56.5 3.4 25 98-122 3-27 (322)
431 3c5c_A RAS-like protein 12; GD 95.5 0.0062 2.1E-07 51.3 2.8 23 100-122 23-45 (187)
432 3def_A T7I23.11 protein; chlor 95.5 0.0061 2.1E-07 54.8 2.9 23 100-122 38-60 (262)
433 3umf_A Adenylate kinase; rossm 95.5 0.0074 2.5E-07 53.3 3.3 27 96-122 27-53 (217)
434 1njg_A DNA polymerase III subu 95.5 0.0081 2.8E-07 51.5 3.6 43 227-272 125-167 (250)
435 3v9p_A DTMP kinase, thymidylat 95.5 0.0058 2E-07 54.3 2.7 28 95-122 22-49 (227)
436 2fh5_B SR-beta, signal recogni 95.5 0.0065 2.2E-07 52.1 2.8 23 100-122 9-31 (214)
437 1h65_A Chloroplast outer envel 95.5 0.0064 2.2E-07 54.8 2.9 23 100-122 41-63 (270)
438 2gco_A H9, RHO-related GTP-bin 95.5 0.0064 2.2E-07 51.8 2.7 23 100-122 27-49 (201)
439 3tqf_A HPR(Ser) kinase; transf 95.5 0.013 4.3E-07 50.2 4.4 34 86-120 5-38 (181)
440 2fu5_C RAS-related protein RAB 95.4 0.0043 1.5E-07 51.6 1.5 23 100-122 10-32 (183)
441 2zts_A Putative uncharacterize 95.4 0.01 3.5E-07 51.9 3.9 62 225-286 132-206 (251)
442 2b6h_A ADP-ribosylation factor 95.4 0.0063 2.1E-07 51.6 2.4 22 100-121 31-52 (192)
443 4tmk_A Protein (thymidylate ki 95.4 0.0089 3.1E-07 52.5 3.4 27 97-123 2-28 (213)
444 1ypw_A Transitional endoplasmi 95.4 0.0023 7.7E-08 67.2 -0.6 42 91-137 504-545 (806)
445 2atx_A Small GTP binding prote 95.4 0.0072 2.5E-07 50.9 2.7 23 100-122 20-42 (194)
446 2ocp_A DGK, deoxyguanosine kin 95.4 0.0087 3E-07 52.9 3.3 25 98-122 2-26 (241)
447 3tmk_A Thymidylate kinase; pho 95.3 0.0096 3.3E-07 52.5 3.4 28 96-123 3-30 (216)
448 3euj_A Chromosome partition pr 95.3 0.024 8.3E-07 55.9 6.6 71 208-286 377-464 (483)
449 2r8r_A Sensor protein; KDPD, P 95.3 0.0048 1.6E-07 55.0 1.4 46 223-269 79-125 (228)
450 3ld9_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 52.6 3.5 27 96-122 19-45 (223)
451 3cnl_A YLQF, putative uncharac 95.3 0.0091 3.1E-07 54.1 3.2 25 99-123 100-124 (262)
452 2hf9_A Probable hydrogenase ni 95.3 0.0088 3E-07 51.8 2.9 24 99-122 39-62 (226)
453 1sxj_D Activator 1 41 kDa subu 95.3 0.002 6.9E-08 59.7 -1.3 51 228-281 133-183 (353)
454 4dcu_A GTP-binding protein ENG 95.2 0.0074 2.5E-07 58.9 2.6 22 100-121 25-46 (456)
455 2g3y_A GTP-binding protein GEM 95.2 0.0094 3.2E-07 52.0 3.0 23 100-122 39-61 (211)
456 3n70_A Transport activator; si 95.2 0.0097 3.3E-07 48.4 2.9 40 229-271 77-116 (145)
457 3sr0_A Adenylate kinase; phosp 95.2 0.011 3.6E-07 51.8 3.2 23 100-122 2-24 (206)
458 2yc2_C IFT27, small RAB-relate 95.2 0.0041 1.4E-07 52.7 0.5 22 100-121 22-43 (208)
459 4djt_A GTP-binding nuclear pro 95.2 0.0039 1.3E-07 53.7 0.4 23 100-122 13-35 (218)
460 2hup_A RAS-related protein RAB 95.2 0.009 3.1E-07 51.0 2.7 23 100-122 31-53 (201)
461 3cpj_B GTP-binding protein YPT 95.1 0.0098 3.4E-07 51.6 2.8 23 100-122 15-37 (223)
462 1p5z_B DCK, deoxycytidine kina 95.1 0.0067 2.3E-07 54.4 1.8 27 96-122 22-48 (263)
463 2x77_A ADP-ribosylation factor 95.1 0.0063 2.2E-07 51.0 1.5 22 100-121 24-45 (189)
464 4gzl_A RAS-related C3 botulinu 95.1 0.01 3.4E-07 50.8 2.7 22 100-121 32-53 (204)
465 3foz_A TRNA delta(2)-isopenten 95.0 0.013 4.4E-07 54.7 3.5 25 98-122 10-34 (316)
466 3q3j_B RHO-related GTP-binding 95.0 0.011 3.8E-07 51.1 2.8 23 100-122 29-51 (214)
467 2j0v_A RAC-like GTP-binding pr 94.9 0.011 3.9E-07 50.4 2.7 23 100-122 11-33 (212)
468 3syl_A Protein CBBX; photosynt 94.9 0.015 5.1E-07 52.9 3.4 26 97-122 66-91 (309)
469 2r62_A Cell division protease 94.9 0.0061 2.1E-07 54.5 0.7 28 93-122 41-68 (268)
470 2chg_A Replication factor C sm 94.8 0.014 4.9E-07 49.3 3.0 42 227-271 101-142 (226)
471 3eph_A TRNA isopentenyltransfe 94.8 0.015 5.1E-07 56.1 3.3 24 99-122 3-26 (409)
472 2orw_A Thymidine kinase; TMTK, 94.7 0.018 6.3E-07 49.1 3.4 54 228-287 76-138 (184)
473 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.019 6.5E-07 53.4 3.4 27 96-122 43-69 (322)
474 1d2n_A N-ethylmaleimide-sensit 94.5 0.018 6E-07 51.7 3.0 25 97-121 63-87 (272)
475 1g8f_A Sulfate adenylyltransfe 94.5 0.016 5.6E-07 57.5 3.0 28 96-123 393-420 (511)
476 3gmt_A Adenylate kinase; ssgci 94.5 0.018 6.3E-07 51.2 3.0 23 99-121 9-31 (230)
477 1wxq_A GTP-binding protein; st 94.5 0.017 5.9E-07 55.5 2.9 41 185-234 181-221 (397)
478 2vhj_A Ntpase P4, P4; non- hyd 94.5 0.022 7.5E-07 53.4 3.5 33 88-120 113-145 (331)
479 3uk6_A RUVB-like 2; hexameric 94.4 0.022 7.4E-07 53.2 3.4 27 97-123 69-95 (368)
480 3hws_A ATP-dependent CLP prote 94.4 0.019 6.6E-07 53.9 3.0 26 97-122 50-75 (363)
481 1puj_A YLQF, conserved hypothe 94.4 0.023 8E-07 51.9 3.4 24 99-122 121-144 (282)
482 3th5_A RAS-related C3 botulinu 93.4 0.0074 2.5E-07 51.4 0.0 22 100-121 32-53 (204)
483 3t15_A Ribulose bisphosphate c 94.3 0.021 7.2E-07 52.3 3.1 24 99-122 37-60 (293)
484 1ofh_A ATP-dependent HSL prote 94.3 0.021 7E-07 51.7 3.0 25 98-122 50-74 (310)
485 2qgz_A Helicase loader, putati 94.3 0.025 8.6E-07 52.3 3.6 25 98-122 152-176 (308)
486 3eie_A Vacuolar protein sortin 94.3 0.025 8.6E-07 52.3 3.6 26 97-122 50-75 (322)
487 2hjg_A GTP-binding protein ENG 94.3 0.018 6.2E-07 55.8 2.6 23 100-122 5-27 (436)
488 3p32_A Probable GTPase RV1496/ 94.3 0.022 7.4E-07 53.7 3.1 26 97-122 78-103 (355)
489 3r7w_A Gtpase1, GTP-binding pr 94.2 0.022 7.6E-07 52.5 3.0 22 100-121 5-26 (307)
490 3gj0_A GTP-binding nuclear pro 94.2 0.014 4.9E-07 50.3 1.6 21 101-121 18-39 (221)
491 2x2e_A Dynamin-1; nitration, h 94.2 0.015 5E-07 54.8 1.6 23 100-122 33-55 (353)
492 3ec1_A YQEH GTPase; atnos1, at 94.2 0.021 7.3E-07 54.2 2.8 25 97-121 161-185 (369)
493 3pvs_A Replication-associated 94.1 0.013 4.5E-07 57.2 1.3 29 95-123 45-75 (447)
494 2qby_B CDC6 homolog 3, cell di 94.1 0.028 9.5E-07 52.5 3.4 26 97-122 44-69 (384)
495 1m8p_A Sulfate adenylyltransfe 94.0 0.027 9.1E-07 56.8 3.3 27 96-122 394-420 (573)
496 1x6v_B Bifunctional 3'-phospho 94.0 0.028 9.6E-07 57.2 3.5 26 97-122 51-76 (630)
497 2qpt_A EH domain-containing pr 94.0 0.025 8.7E-07 56.7 3.0 24 99-122 66-89 (550)
498 3geh_A MNME, tRNA modification 94.0 0.023 7.9E-07 55.7 2.7 24 98-121 224-247 (462)
499 3h2y_A GTPase family protein; 93.9 0.023 8E-07 53.9 2.6 25 97-121 159-183 (368)
500 4hlc_A DTMP kinase, thymidylat 93.9 0.033 1.1E-06 48.5 3.3 26 98-123 2-27 (205)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=8.6e-58 Score=439.20 Aligned_cols=221 Identities=26% Similarity=0.394 Sum_probs=196.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|..+. +...+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 22 ~~mi~v~~ls~~y~~~~---~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~ 95 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT---RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTL 95 (366)
T ss_dssp -CCEEEEEEEEEEECSS---SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSC
T ss_pred CceEEEEeEEEEeCCCC---CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcC
Confidence 45799999999995321 245799999999999999999999999999999999999987 47999999998632
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++++|||||++.+++.+||+||+.++.... ..+..+.++++.++|+.+||.+..++ +|.+||||
T Consensus 96 ~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGG 167 (366)
T 3tui_C 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGG 167 (366)
T ss_dssp CHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHH
T ss_pred CHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 1357999999999999999999999987653 24567778899999999999876665 56899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..|+++|++++++.|+|||+||||+ ..+..+||||++|++|++++.|
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999877799999999996 6889999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 247 ~~~e 250 (366)
T 3tui_C 247 TVSE 250 (366)
T ss_dssp BHHH
T ss_pred CHHH
Confidence 9643
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.5e-56 Score=432.98 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=194.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 3 ~l~~~~l~~~yg-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCH
Confidence 489999999993 46799999999999999999999999999999999999987 47999999998632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||.+||+||+.|+...+ ..++.+.++++.++++.++|.+..++ +|.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 2356999999999999999999999987654 34677788899999999999877665 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||||++|++|++++.|++++
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999877799999999996 58999999999999999999999654
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-56 Score=429.21 Aligned_cols=216 Identities=26% Similarity=0.444 Sum_probs=192.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec----c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE----T 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~----~ 140 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y~-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEECccccc
Confidence 689999999993 46799999999999999999999999999999999999988 479999999875 1
Q ss_pred ---cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 141 ---LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 141 ---~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
...+.++||||++.+||.+||+||+.|+...+ .....+.+++++++++.++|.+..++ +|.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 12356999999999999999999999876532 23456677889999999999887766 46799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+++.|.++.++.|+|+|++|||+ .++..+||||++|++|++++.|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999999999888777899999999996 5889999999999999999999975
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 225 el 226 (359)
T 3fvq_A 225 EL 226 (359)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-56 Score=405.65 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=189.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||++.|+.+. ..+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~---~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE---EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCCC---cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCH
Confidence 478999999995221 134699999999999999999999999999999999999987 479999999876321
Q ss_pred -------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHH
Q 038004 143 -------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 -------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~~~~~~LSGG 214 (330)
++.++||||++.+++.+||+||+.++............+..+++.++++.++|.+.. ++ ++.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 135999999999999999999999876543222345666778899999999998653 44 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|+|||++|||+ . +..+||++++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999766699999999996 4 45899999999999999998
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
+.++
T Consensus 228 ~~~~ 231 (235)
T 3tif_A 228 KLRG 231 (235)
T ss_dssp ECC-
T ss_pred Chhh
Confidence 8644
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2e-55 Score=409.29 Aligned_cols=218 Identities=27% Similarity=0.417 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ +...+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~i~~ls~~y~------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 6 YILKVEELNYNYS------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEEEEEEEECT------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSH
T ss_pred cEEEEEEEEEEEC------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCccc
Confidence 5799999999994 224599999999999999999999999999999999999987 47999999998631
Q ss_pred -----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.++||||++. .++.+||+||+.|+.... ..+..+..++++++++.++|.+..++. +.+|||||
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 1246999999973 344789999999986542 345677788899999999998776654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||+ ..+..+||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999733499999999996 47889999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 228 ~~~~ 231 (275)
T 3gfo_A 228 PKEV 231 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-55 Score=402.51 Aligned_cols=215 Identities=29% Similarity=0.388 Sum_probs=188.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVR 74 (262)
T ss_dssp CCEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEE
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEccccc
Confidence 3699999999993 35799999999999999999999999999999999999987 47999999987631
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccc
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRI 203 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~ 203 (330)
.++.++||||++.+++.+||.||+.++. ... .....+.++++.++++.+||.+. .+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~- 150 (262)
T 1b0u_A 75 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY- 150 (262)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC-
T ss_pred cccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC-
Confidence 1245999999999999999999999864 322 23445566789999999999887 6654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 204 ~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||+++
T Consensus 151 ----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~ 224 (262)
T 1b0u_A 151 ----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVI 224 (262)
T ss_dssp ----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEE
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEE
Confidence 5699999999999999999999999999999999999999999999999755 99999999995 57889999999
Q ss_pred EEeCCeEEEEcChhh
Q 038004 284 LLAYGKTIYFGPASM 298 (330)
Q Consensus 284 vl~~G~iv~~g~~~~ 298 (330)
+|++|++++.|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 225 FLHQGKIEEEGDPEQ 239 (262)
T ss_dssp EEETTEEEEEECHHH
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999999643
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-54 Score=417.78 Aligned_cols=216 Identities=24% Similarity=0.408 Sum_probs=193.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKFG-------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEESS-------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCH
Confidence 489999999982 35799999999999999999999999999999999999987 47999999997632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999987543 23456667889999999999887766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999766699999999995 578899999999999999999997543
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-54 Score=416.56 Aligned_cols=219 Identities=23% Similarity=0.404 Sum_probs=194.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+.|+++||++.|+ +++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 12 ~~~l~~~~l~~~y~------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYP------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDL 82 (355)
T ss_dssp CEEEEEEEEEECCT------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTC
T ss_pred CceEEEEEEEEEEc------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcC
Confidence 35799999999983 234699999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRv 154 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRV 154 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHH
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHH
Confidence 2357999999999999999999999987543 23556677889999999999877766 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999866699999999995 578899999999999999999997543
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.7e-54 Score=400.69 Aligned_cols=214 Identities=26% Similarity=0.386 Sum_probs=188.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--c-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--L- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--~- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++. .
T Consensus 24 ~l~i~~l~~~y~-------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSFG-------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccc
Confidence 699999999993 35699999999999999999999999999999999999987 4799999998763 1
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++||||++.+++.+||+||+.++. ... .....+..++++++++.++|.+..++. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 1235999999999999999999999864 322 234455667899999999998776654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+..+..++++|++++++ |+|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999755 99999999995 578899999999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 244 ~~ 245 (263)
T 2olj_A 244 ED 245 (263)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-54 Score=418.05 Aligned_cols=216 Identities=24% Similarity=0.409 Sum_probs=192.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVFG-------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEECccccc
Confidence 589999999993 35799999999999999999999999999999999999987 47999999986522
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++||||++.+||++||+||+.|+...+ .....+.+++++++++.++|.+..++ ++.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHH
Confidence 2356999999999999999999999987643 23456667889999999999877766 457999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999766699999999995 57889999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 224 ~~~l 227 (372)
T 1g29_1 224 PDEV 227 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-54 Score=417.89 Aligned_cols=216 Identities=26% Similarity=0.433 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYFG-------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCCh
Confidence 489999999993 35799999999999999999999999999999999999987 47999999998632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999876432 23344556789999999999877766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999766699999999995 578899999999999999999997543
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-54 Score=391.94 Aligned_cols=211 Identities=29% Similarity=0.425 Sum_probs=186.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++....
T Consensus 3 ~~l~~~~l~~~y~-------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 3 EILRAENIKKVIR-------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTN 72 (224)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSC
T ss_pred cEEEEEeEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCC
Confidence 3699999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++||||++.+++.+||.||+.++...+ .....+..+++.++++.++|.+..+++ +.+||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGG 144 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHH
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHH
Confidence 145999999999999999999999876543 234455567899999999998776664 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||+ ..+ .+||++++|++|++++.|
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999765 99999999995 455 899999999999999988
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 222 ~ 222 (224)
T 2pcj_A 222 T 222 (224)
T ss_dssp E
T ss_pred e
Confidence 6
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-54 Score=416.48 Aligned_cols=216 Identities=27% Similarity=0.416 Sum_probs=192.0
Q ss_pred eEEEEeEEEEecCCcccCCccc--eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHA--ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~--iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|. ++. +|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~-------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVFK-------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEEG-------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEET
T ss_pred EEEEEeEEEEEC-------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECccc
Confidence 489999999993 356 99999999999999999999999999999999999987 47999999987522
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 2356999999999999999999999876432 23556667889999999999887766 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999766699999999996 5788999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 224 ~~~~l 228 (353)
T 1oxx_K 224 KPEDL 228 (353)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 96543
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-54 Score=417.16 Aligned_cols=216 Identities=22% Similarity=0.401 Sum_probs=186.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRFG-------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEEC-------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCCh
Confidence 499999999993 35699999999999999999999999999999999999987 47999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 2356999999999999999999999875432 23556667889999999999877665 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999866699999999995 578899999999999999999997543
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.5e-54 Score=400.23 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~-------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQ 79 (266)
T ss_dssp CEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSC
T ss_pred ceEEEEeEEEEeC-------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCC
Confidence 4799999999993 467999999999999999999999999999999999999874 79999999986421
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++. +.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QR 149 (266)
T 4g1u_C 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQR 149 (266)
T ss_dssp HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHH
T ss_pred HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHH
Confidence 245999999999888899999998875432 1233456789999999998877664 56999999999
Q ss_pred HHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 219 VSICIEILT------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 219 v~IAraL~~------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|+|||||+. +|++|||||||+|||+..+..++++|++++++.|+|||++|||+ ..+..+||++++|++|++++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999 99999999999999999999999999999876678999999995 68889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 229 ~g~~~~~ 235 (266)
T 4g1u_C 229 CGTPEEV 235 (266)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 9998654
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-53 Score=393.68 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=190.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 14 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEP 83 (256)
T ss_dssp CCEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCH
T ss_pred CeEEEEEEEEEEC-------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccH
Confidence 4799999999993 35799999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++||+|++.+++.+||+||+.++.... .....+..+++.++++.++|.+..+++ +.+|||||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 155 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKL 155 (256)
T ss_dssp HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999875443 123445567789999999998877764 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999974 599999999996 578889999999999999999986554
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=409.46 Aligned_cols=211 Identities=26% Similarity=0.434 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++ +|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~-------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKWK-------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEECS-------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEEC-------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCch
Confidence 378999999982 35 99999999999999999999999999999999999987 47999999988642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+. .... +++.++++.++|.+..+++ +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 12469999999999999999999999875432 1122 6789999999998877664 57999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999877799999999995 57889999999999999999999654
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.5e-54 Score=397.32 Aligned_cols=218 Identities=22% Similarity=0.343 Sum_probs=188.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 6 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 6 EILRTENIVKYFG-------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKE 75 (257)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCC
T ss_pred cEEEEeeeEEEEC-------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCC
Confidence 4799999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQL-QLPD---------SMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
++.++||+|++.+++.+||.||+.++... .... .....+.++++.++++.+||.+..++.
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 150 (257)
T 1g6h_A 76 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK----- 150 (257)
T ss_dssp HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----
T ss_pred HHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----
Confidence 23599999999999999999999886532 1100 012344567889999999998776664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMFN 228 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEET
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 5699999999999999999999999999999999999999999999999754 99999999996 478889999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999998765
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-53 Score=389.30 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++....
T Consensus 5 ~~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCC
T ss_pred ceEEEEeEEEEEC-------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCC
Confidence 4799999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHH
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+.++||+|++.+++.+||.||+.++.... ....+..++++++++.++ |.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~ 145 (240)
T 1ji0_A 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQ 145 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHH
T ss_pred HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHH
Confidence 235999999999999999999998864211 122345567888999995 8766555 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|+|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 146 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999975 599999999995 578899999999999999999986
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 224 ~~ 225 (240)
T 1ji0_A 224 SE 225 (240)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-53 Score=384.80 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=182.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. . +|+||||+|++ |+++|+||||||||||+|+|+|+++| ++|+|.++|++... .
T Consensus 2 l~~~~l~~~y~-------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRLG-------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEET-------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEeC-------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchh
Confidence 68999999992 2 59999999999 99999999999999999999999987 47999999987632 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.++||||++.+++.+||+||+.++...+ .....+++++++++.+||.+..+++ +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 356999999999999999999998764321 1122357789999999998776654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|++|||||||+|||+..+..++++|++++++.|+|||++|||+ ..+..+||++++|++|++++.|++++
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999755689999999995 57889999999999999999998643
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-52 Score=386.92 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=184.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+|+++||++.|..+. ...+.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++... .
T Consensus 2 ~l~~~~l~~~y~~~~--~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT--PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEI 76 (266)
T ss_dssp CEEEEEEEEEESTTS--TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHH
T ss_pred EEEEEEEEEEecCCC--ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHh
Confidence 589999999994110 0014699999999999999999999999999999999999987 47999999987632 2
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ--DAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
++.++||+|++ .+++.+||+||+.++.... ....+.++++.++++.+||. +..++. +.+|||||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv 147 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRV 147 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHH
Confidence 35699999996 4667789999998864321 11222346788999999998 776654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999755 99999999996 467889999999999999999986543
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.8e-52 Score=381.55 Aligned_cols=216 Identities=23% Similarity=0.290 Sum_probs=178.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR--LSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl--~~~~~~~~G~I~~~g~~~~~~ 142 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++| ++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 3 QLEIRDLWASID-------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTS
T ss_pred eEEEEeEEEEEC-------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCC
Confidence 589999999993 35699999999999999999999999999999999998 555 579999999876321
Q ss_pred ------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC-CCHH
Q 038004 143 ------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG-VSGG 214 (330)
Q Consensus 143 ------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~-LSGG 214 (330)
...++||+|++.+++.+||.||+.++............+..+++.++++.+||. +..++. +.+ ||||
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgG 147 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGG 147 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----
T ss_pred CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHH
Confidence 234899999999999999999998865321111123344557789999999994 666654 467 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv~~ 293 (330)
|||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||+ ..+..+ ||++++|++|++++.
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999964 589999999996 467777 599999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 226 g~~~ 229 (250)
T 2d2e_A 226 GGPE 229 (250)
T ss_dssp ESHH
T ss_pred eCHH
Confidence 9976
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.1e-51 Score=376.09 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=181.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|.. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+ .+
T Consensus 4 ~l~i~~l~~~y~~------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~--------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV--------YQ 66 (253)
T ss_dssp EEEEEEEEEEETT------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEEE--------CS
T ss_pred eEEEeeEEEEeCC------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEE--------ec
Confidence 6999999999931 35699999999999999999999999999999999999987 4799982 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.++||+|++.+++.+||.||+.++....... ........++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIAR 141 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHH
Confidence 6999999999999999999998865322100 011234457789999999998777664 5699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999999999999999999999765589999999995 57889999999999999 999986543
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.8e-52 Score=388.99 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.
T Consensus 19 ~~~l~~~~l~~~y~-------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ-------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPGKV 88 (279)
T ss_dssp CEEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC--
T ss_pred CceEEEEeEEEEEC-------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcccc
Confidence 35799999999993 35699999999999999999999999999999999999987 4799999998653
Q ss_pred c-----ccCcEEEEeCCCCC--CCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 141 L-----AFGTSAYVTQEDTL--MTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 141 ~-----~~~~i~~v~Q~~~l--~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
. .++.++||+|++.+ ++.+||+||+.++...... ......+..+++.++++.+||.+..+++ +.+||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 163 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLS 163 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSC
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 1 13569999999753 3457999999875321100 0111234457789999999998776664 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE--EEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV--VASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv--i~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|| |++|||+ ..+..+||++++|++|++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999765 8999 9999996 467889999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+++++
T Consensus 242 ~~~g~~~~~ 250 (279)
T 2ihy_A 242 IQQGAVEDI 250 (279)
T ss_dssp EEEEEHHHH
T ss_pred EEECCHHHH
Confidence 999987543
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.3e-51 Score=378.10 Aligned_cols=221 Identities=27% Similarity=0.328 Sum_probs=183.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|++ +| ++|+|.++|+++.
T Consensus 18 ~~~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLL 87 (267)
T ss_dssp --CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGG
T ss_pred CceEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECC
Confidence 34799999999993 357999999999999999999999999999999999995 34 5799999998763
Q ss_pred cc------cCcEEEEeCCCCCCCCCCHHHHHHHHHh-h---cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038004 141 LA------FGTSAYVTQEDTLMTTLTVMEAVYYSAQ-L---QLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVR 209 (330)
Q Consensus 141 ~~------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~ 209 (330)
.. ...++||+|++.+++.+||.|++.+... . ......+..+..+++.++++.+||. ...++. +.
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 162 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VN 162 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TT
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cc
Confidence 21 1249999999999999999999987542 1 1111123445567889999999996 345543 44
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeC
Q 038004 210 -GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAY 287 (330)
Q Consensus 210 -~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~ 287 (330)
+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++ +.|+|||++|||+ ..+..+ ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~-~~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQ 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSG-GGGGTSCCSEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCH-HHHHhhcCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999986 4589999999996 466665 899999999
Q ss_pred CeEEEEcChhhHH
Q 038004 288 GKTIYFGPASMTE 300 (330)
Q Consensus 288 G~iv~~g~~~~~~ 300 (330)
|++++.|+++++.
T Consensus 241 G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 241 GRIVKSGDFTLVK 253 (267)
T ss_dssp TEEEEEECTTHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999987654
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.4e-51 Score=382.86 Aligned_cols=217 Identities=25% Similarity=0.338 Sum_probs=177.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+|+++||++.|..+ ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 15 ~~l~~~~l~~~y~~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTTC----TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCCC----CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCC
Confidence 369999999998421 125699999999999999999999999999999999999987 47999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCcccccccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE-----KRERAEMTIREM--GLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~L 211 (330)
.++.++||+|++.+++ .||+||+.++.... ..... ....+.++++.+ ||....++ ++.+|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~L 157 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQL 157 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTS
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCC
Confidence 1246999999999887 59999998754211 11011 122345677777 66555544 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||+ ..+. .||++++|++|+++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVC 235 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998655689999999996 4554 59999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+++++
T Consensus 236 ~~g~~~~l 243 (271)
T 2ixe_A 236 EQGTHLQL 243 (271)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99996543
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.6e-51 Score=373.02 Aligned_cols=211 Identities=25% Similarity=0.420 Sum_probs=176.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 7 DITFRNIRFRYKP-----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEESST-----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred ceeEEEEEEEeCC-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 5899999999941 135699999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI------GGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~~~~~~LSG 213 (330)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..++.. .+.++.+|||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 148 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 148 (247)
T ss_dssp HHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCH
T ss_pred HHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCH
Confidence 1246999999999886 599999977521 111 235677888888876544321 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + |+|||++|||+. .+ ..||++++|++|++++.
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999994 4 899999999964 55 45999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 225 g~~~ 228 (247)
T 2ff7_A 225 GKHK 228 (247)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9954
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1e-50 Score=382.78 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+. ...+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 53 ~i~~~~vs~~y~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYAD------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CEEEEEEEEESST------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCH
T ss_pred eEEEEEEEEEcCC------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCH
Confidence 5999999999952 35699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+ .||+|||.++... ... +++.++++.+++.+. +++.++ ..+.+||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LS 192 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLS 192 (306)
T ss_dssp HHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCC
T ss_pred HHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCC
Confidence 1346999999999986 5999999876421 111 335556666665433 334343 2456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+|||++ ..+.. ||+|++|++|+|++
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVVN-ADQILVIKDGCIVE 268 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHHT-CSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999863 68999999996 46655 99999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 269 ~G~~~el 275 (306)
T 3nh6_A 269 RGRHEAL 275 (306)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.3e-50 Score=370.29 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=179.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++. .+|+||||+|++||+++|+||||||||||+|+|+|+++| + |+|.++|++...
T Consensus 4 ~l~~~~l~~~-----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES-----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET-----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE-----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCH
Confidence 6899999854 379999999999999999999999999999999999986 6 999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++||+|++.+++.+||+||+.++.. . ... .+++.++++.+||.+..++. +.+|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 12459999999999999999999987521 1 111 46688999999998777664 569999999999
Q ss_pred HHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILTRPK-------LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~~P~-------llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
+|||||+.+|+ +|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++|++++
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999 99999999999999999999999999755 99999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 214 ~g~~~~~ 220 (249)
T 2qi9_C 214 SGRREEV 220 (249)
T ss_dssp EEEHHHH
T ss_pred eCCHHHH
Confidence 9986543
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-50 Score=369.73 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=178.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 1 MLSARHVDFAYD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISL 71 (243)
T ss_dssp CEEEEEEEECSS------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEEeC------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 378999999983 235699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI------GGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~~~~~~LSG 213 (330)
.++.++||+|++.+++ .||+||+.++... ... .+++.++++.+++.+..++.. .+.++.+|||
T Consensus 72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred HHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 2356999999999887 5999999765211 111 245778899999877654321 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |+|||++|||+ ..+ ..||++++|++|++++.
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 4 89999999996 455 46999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 219 g~~~~~ 224 (243)
T 1mv5_A 219 GKHNEL 224 (243)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 986543
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-50 Score=363.31 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=173.0
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
.+..|+++||++.|. + .+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 7 ~~~~l~~~~ls~~y~-------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~ 75 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYD-------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITK 75 (214)
T ss_dssp --CEEEEEEEEEESS-------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGG
T ss_pred CCceEEEEEEEEEeC-------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhhh
Confidence 356899999999982 4 699999999999999999999999999999999999987 47999999987642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.++.++||+|++.+++.+||.||+.++...+. .. .+ .+++.++++.++|.+. ++ ++.+|||||||||+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~l 144 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQL 144 (214)
T ss_dssp GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHH
T ss_pred hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHH
Confidence 34569999999999999999999998754321 11 12 4668899999999876 54 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||+++++ .|+|
T Consensus 145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999754 89999999996 4688889987754 3554
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-49 Score=365.96 Aligned_cols=208 Identities=21% Similarity=0.313 Sum_probs=177.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+|+++||++.|..+. ..+.+|+||||+|+ ||+++|+||||||||||+|+|+|++ |+ +|+|.++|++... .
T Consensus 1 ml~~~~l~~~y~~~~---~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG---YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEET---TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCC---ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHH
Confidence 378999999994100 11569999999999 9999999999999999999999999 74 7999999987531 2
Q ss_pred cCcEE-EEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSA-YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~-~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
++.++ ||+|++.+ .+||.||+.++..+. .. ..+++.++++.++|. +..+++ +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 45699 99999987 789999998875432 11 235688999999998 776664 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc-EEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH-NLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d-~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++ + |||++|||+ ..+..+|| ++++|++|++++.|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~-~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-K---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC-S---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc-C---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998874 2 999999996 46788999 9999999999999996543
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.4e-49 Score=363.92 Aligned_cols=213 Identities=26% Similarity=0.387 Sum_probs=175.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|... ..+.+|+||||+|++||+++|+||||||||||+|+|+|++++ +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~ 87 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYN 87 (260)
T ss_dssp CCEEEEEEEECCTTC----CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBC
T ss_pred CeEEEEEEEEEeCCC----CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcC
Confidence 469999999999421 124699999999999999999999999999999999999864 5999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~L 211 (330)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+. +++.+ +.++.+|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~-~~~~~~L 156 (260)
T 2ghi_A 88 RNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIV-GNKGMKL 156 (260)
T ss_dssp HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEE-SSSSBCC
T ss_pred HHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccc-cCCcCcC
Confidence 1356999999999886 599999987421 111 2345667777776443 22222 2356799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ + |+|||++|||+. .+ ..||++++|++|+++
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS-TI-SSAESIILLNKGKIV 232 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG-GS-TTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 4 799999999964 45 469999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+++++
T Consensus 233 ~~g~~~~l 240 (260)
T 2ghi_A 233 EKGTHKDL 240 (260)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99996543
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-49 Score=384.29 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=175.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
..|+++||++.|+. +...+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESSS-----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEecC-----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCC
Confidence 36999999999952 23579999999999999999999999999999999999986 3 69999999876421
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC--------
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG-------- 210 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~-------- 210 (330)
++.++||||++.+|+ +||+||+.+.. .. ..+++.++++.++|.+..++. |.+
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~-----p~~l~~~i~~~ 152 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQF-----PGKLDFVLVDG 152 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTS-----TTGGGCEECTT
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhc-----ccccccccccc
Confidence 256999999999997 69999995321 11 135678899999998776653 445
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 211 ---VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 211 ---LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++. .+.|+|++|||+. ....||||++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999998864 4799999999963 4456999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|+|++.|++++
T Consensus 229 G~i~~~g~~~e 239 (390)
T 3gd7_A 229 NKVRQYDSILE 239 (390)
T ss_dssp TEEEEESSHHH
T ss_pred CEEEEECCHHH
Confidence 99999999654
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.9e-48 Score=353.18 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=165.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.|.. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEE-----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSST-----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS-------
T ss_pred ceEEEEEEEEEeCC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC-------
Confidence 36999999999842 235699999999999999999999999999999999999987 479999998
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGGQKR 217 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGGqrQ 217 (330)
+++|++|++.+++. ||+||+.++.. ... .++.++++.+++.+..+.. ..+..+.+|||||||
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq 137 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 137 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 38999999998885 99999987531 111 1233455555554332211 112245799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+|||||+.+|++|||||||+|||+.++..+++.+ +++. + |.|||++|||+ ..+. .||++++|++|++++.|++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~-~~~~-~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKM-EHLK-KADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCH-HHHH-HCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCCh-HHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999964 5553 3 79999999996 4554 6999999999999999986
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 214 ~~ 215 (229)
T 2pze_A 214 SE 215 (229)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=355.81 Aligned_cols=206 Identities=23% Similarity=0.384 Sum_probs=163.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|.. .++.+|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESCT-----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------
T ss_pred eEEEEEEEEEeCC-----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------
Confidence 4899999999941 135699999999999999999999999999999999999987 479999998
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH---HHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM---TIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++||+|++.+ +.+||+||+.++... .... .+++.+ +++.+++.+. .++.+ ++++.+|||||||||+
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~ 137 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVS 137 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHH
Confidence 38999999875 578999999875321 1111 111211 2233333221 11112 2356799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV---NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~---~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..+++.|. ++. .|+|||++|||+. .+ ..||++++|++|++++.|+++
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999985 343 3899999999974 45 579999999999999999965
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 214 ~~ 215 (237)
T 2cbz_A 214 EL 215 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.3e-46 Score=381.26 Aligned_cols=215 Identities=28% Similarity=0.424 Sum_probs=179.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+.. .++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 342 i~~~~v~~~y~~~----~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~i~~~~~~ 414 (595)
T 2yl4_A 342 LEFKNVHFAYPAR----PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGHDIRQLNPV 414 (595)
T ss_dssp EEEEEEEEECSSC----TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTEETTTBCHH
T ss_pred EEEEEEEEEeCCC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCEEhhhCCHH
Confidence 9999999999521 124699999999999999999999999999999999999987 47999999998642
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LSG 213 (330)
.+++++||+|++.+++. ||+||+.++.... ... .++++.++++.+++.+. +++.++. .+.+|||
T Consensus 415 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSg 486 (595)
T 2yl4_A 415 WLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSV----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSG 486 (595)
T ss_dssp HHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTS----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCH
T ss_pred HHHhceEEEccCCcccCC-CHHHHHhhcCCCc--ccc----CHHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCH
Confidence 12469999999999875 9999998764210 011 23457788888877543 4555543 4579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ |+|+|++||++ ..+ ..||+|++|++|++++.
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRL-STI-KNANMVAVLDQGKITEY 562 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCH-HHH-HHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHH-HcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999863 79999999996 455 46999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|++++.
T Consensus 563 g~~~~l 568 (595)
T 2yl4_A 563 GKHEEL 568 (595)
T ss_dssp ECSCC-
T ss_pred CCHHHH
Confidence 997654
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.3e-46 Score=378.85 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=178.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.+ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~~-----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK-----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred eEEEEEEEEEcCCC-----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 69999999999521 256999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. + ..+ ++++.++++.+++.+..+ +.++. ...+||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LS 482 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLS 482 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCC
Confidence 23579999999999875 99999987531 1 111 345777888888765433 33332 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. + |+|+|++||++ ..+ ..||++++|++|++++
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRL-STI-EQADEILVVDEGEIIE 558 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999985 3 89999999996 455 4799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 559 ~g~~~~ 564 (582)
T 3b5x_A 559 RGRHAD 564 (582)
T ss_pred ECCHHH
Confidence 999654
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.3e-46 Score=378.82 Aligned_cols=213 Identities=27% Similarity=0.380 Sum_probs=178.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTL 412 (582)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCH
T ss_pred cEEEEEEEEEcCC-----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCH
Confidence 5999999999942 125699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+++. ||+||+.++.. + ..+ ++++.++++.+++.+. +++.++. .+.+||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LS 482 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLS 482 (582)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSC
T ss_pred HHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCC
Confidence 12469999999999875 99999987531 1 112 2457778888877543 3444433 457999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|++||++. .+ ..||++++|++|++++
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVE 558 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986 3 899999999964 45 4799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 559 ~g~~~~l 565 (582)
T 3b60_A 559 RGTHSEL 565 (582)
T ss_dssp EECHHHH
T ss_pred ecCHHHH
Confidence 9997544
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-46 Score=380.66 Aligned_cols=212 Identities=22% Similarity=0.378 Sum_probs=175.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 341 SVSFENVEFRYFE-----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTVKL 412 (587)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGBCH
T ss_pred cEEEEEEEEEcCC-----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccCCH
Confidence 5999999999953 235699999999999999999999999999999999999987 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++..++ ++..++.++ .++.+||
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LS 481 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFS 481 (587)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSC
T ss_pred HHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcC
Confidence 13569999999999876 99999976532 1122 223344444443 334455544 3567999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||++ ..+ ..||+|++|++|++++
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~-~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI-PTA-LLADKILVLHEGKVAG 557 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH-HHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999984 389999999996 445 5899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 558 ~g~~~el 564 (587)
T 3qf4_A 558 FGTHKEL 564 (587)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.9e-46 Score=379.53 Aligned_cols=212 Identities=25% Similarity=0.356 Sum_probs=176.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +...+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 339 ~i~~~~v~~~y~~-----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 339 RIDIDHVSFQYND-----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLT 410 (578)
T ss_dssp CEEEEEEEECSCS-----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCC-----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 5999999999953 235699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++..++.+ ..++.++ ....+||
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LS 479 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLS 479 (578)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSC
T ss_pred HHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCC
Confidence 13469999999999886 99999987531 1122 34555666665533 3444444 2456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .++|+|++||++. .+ ..||+|++|++|++++
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-TI-THADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999885 3789999999974 45 4699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 556 ~g~~~el 562 (578)
T 4a82_A 556 TGTHREL 562 (578)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997543
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.5e-46 Score=346.94 Aligned_cols=200 Identities=23% Similarity=0.379 Sum_probs=152.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.+ +.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG------- 99 (290)
T ss_dssp -----------C---------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS-------
T ss_pred ceEEEEEEEEcC---------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC-------
Confidence 469999999752 3589999999999999999999999999999999999987 479999987
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGGQKR 217 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGGqrQ 217 (330)
+++||+|++.+++. ||+||+. +. . ... .++.++++.+++.+..+.. ..+..+.+|||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~Q 166 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHH
Confidence 38999999998885 9999997 32 1 111 1234455666664432221 111235799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+|||||+.+|++|||||||+|||+..+..+++.+ +++. .|+|||++|||+ ..+ ..||++++|++|++++.|++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999864 4553 389999999996 455 46999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 243 ~~l 245 (290)
T 2bbs_A 243 SEL 245 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.4e-46 Score=379.33 Aligned_cols=211 Identities=25% Similarity=0.378 Sum_probs=173.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++||++.|+ +++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 354 ~i~~~~v~~~y~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYD------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKR 424 (598)
T ss_dssp CEEEEEEECCSS------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEECC------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCH
Confidence 599999999994 235699999999999999999999999999999999999987 479999999986421
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCC
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVS 212 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LS 212 (330)
+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++.+++.+.. ++.++. ...+||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LS 493 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLS 493 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSC
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCC
Confidence 3469999999999875 99999987531 1111 2345555555554332 332221 235899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||++. .+. .||+|++|++|++++
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLN-TIK-NADLIIVLRDGEIVE 569 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTT-HHH-HCSEEEEECSSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHH-HHH-cCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999985 3 899999999974 554 599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 570 ~g~~~~l 576 (598)
T 3qf4_B 570 MGKHDEL 576 (598)
T ss_dssp CSCHHHH
T ss_pred ECCHHHH
Confidence 9997543
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.8e-45 Score=398.76 Aligned_cols=215 Identities=30% Similarity=0.470 Sum_probs=182.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.+ ...++|+||||+|++||.+||+|+||||||||+++|.|++.| .+|+|.+||.++..
T Consensus 1076 ~I~f~nVsf~Y~~~----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CEEEEEEEECCTTS----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCH
T ss_pred eEEEEEEEEeCCCC----CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCH
Confidence 59999999999743 245799999999999999999999999999999999999987 47999999998742
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. |++|||.|+... ...+ .+++.++++..++ ++.+++.+++ ...+||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LS 1219 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLS 1219 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSC
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccC
Confidence 24689999999999987 999999776321 1122 3446667777665 4557777775 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|+++. .|+|+|+|+|.+. . ...||+|+||++|+|++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs-T-i~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN-T-VMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS-T-TTTCSEEEEESSSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH-H-HHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 4899999999974 3 45799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|++++.
T Consensus 1296 ~Gth~eL 1302 (1321)
T 4f4c_A 1296 KGTHTQL 1302 (1321)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.3e-43 Score=384.65 Aligned_cols=213 Identities=28% Similarity=0.384 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .+.++|+||||+|++||.+||+||||||||||+++|+|+++| .+|+|.+||.++..
T Consensus 415 ~I~~~nvsF~Y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINL 487 (1321)
T ss_dssp CEEEEEEEECCSSS----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred cEEEEEeeeeCCCC----CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccH
Confidence 59999999999642 346799999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. ||+|||.|+.. ..+ ++++.++++..+ |++..++.+|++ ...||
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LS 556 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLS 556 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCC
T ss_pred HHHhhcccccCCcceeeCC-chhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecCC-CCCCC
Confidence 23579999999999986 99999988632 122 234566666655 456677888764 45899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...+.+.|.++. .|+|+|+|||++. ..+.||+|++|++|+|++
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeec
Confidence 999999999999999999999999999999999999999999986 3899999999964 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 633 ~Gth~eL 639 (1321)
T 4f4c_A 633 VGDHRAL 639 (1321)
T ss_dssp EECHHHH
T ss_pred cCCHHHH
Confidence 9997654
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-42 Score=352.43 Aligned_cols=207 Identities=23% Similarity=0.281 Sum_probs=177.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++|+ +|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~-------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD------- 416 (607)
T ss_dssp CEEEEECCEEEECS-------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC-------
T ss_pred ceEEEEeceEEEec-------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe-------
Confidence 46899999999982 2 3699999999999999999999999999999999999874 7999762
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++|++|++.+++.+||.|++.+..... ....+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 417 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred -eEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 35999999998888899999886541111 01235678899999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+|||+++|++ |++++.|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 9999999999999999999999999999999999766799999999995 688899999999986 8888899987654
Q ss_pred H
Q 038004 301 Q 301 (330)
Q Consensus 301 ~ 301 (330)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 3
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-42 Score=350.09 Aligned_cols=207 Identities=25% Similarity=0.291 Sum_probs=176.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++| .+|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~-------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG-------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKIEWD------- 346 (538)
T ss_dssp CEEEEECCEEEEET-------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCCCCC-------
T ss_pred CeEEEEeeEEEEEC-------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEC-------
Confidence 46899999999983 2 369999999999999999999999999999999999987 47999861
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++||+|++.+++.+||.+++........ ...+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 347 -~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 347 -LTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIA 413 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHH
T ss_pred -ceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 359999999988788999988865311110 0134678899999997666554 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+|||+++|++ |++++.|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 9999999999999999999999999999999999755689999999995 688999999999986 7888899987654
Q ss_pred H
Q 038004 301 Q 301 (330)
Q Consensus 301 ~ 301 (330)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 3
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-42 Score=378.39 Aligned_cols=213 Identities=29% Similarity=0.409 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 387 ~i~~~~v~~~y~~~----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CEEEEEEEECCSST----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCCC----CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCH
Confidence 59999999999632 235699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+|||.++.. ..+.+ .+.++++..+ +++..++.++. ...+||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LS 528 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLS 528 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSC
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCcHHHHHhccccccccccC-CCCccC
Confidence 13469999999999986 99999998742 12222 2334444433 33445565553 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...+.+.|+.+. .|+|+|+|||++ ..+. .||+|++|++|++++
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~i~-~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRL-STVR-NADVIAGFDGGVIVE 604 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCH-HHHT-TCSEEEECSSSCCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHHH-cCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998875 389999999996 4564 599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 605 ~g~~~~l 611 (1284)
T 3g5u_A 605 QGNHDEL 611 (1284)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.4e-42 Score=346.51 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=175.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~~-------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~----- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA---DEGSVTPEKQ----- 330 (538)
T ss_dssp CEEEEECCEEEEET-------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SBCCEESSCC-----
T ss_pred cceEEEcceEEEEC-------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCe-----
Confidence 46899999999983 2 358889999999999999999999999999999999987 4799987653
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.++|++|+....+.+||.|++.+..... .. .....++++++.++|.+..++ ++.+|||||||||+||
T Consensus 331 --~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 331 --ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIA 397 (538)
T ss_dssp --CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHH
T ss_pred --eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 5899999987777889999997642111 11 112457888999999876665 4579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMT 299 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~ 299 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||+ .++..+||||++|++ |.+...+++...
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999999999877799999999995 688999999999986 566666766443
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-42 Score=376.75 Aligned_cols=215 Identities=27% Similarity=0.424 Sum_probs=176.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1030 ~i~~~~v~~~y~~~----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CEEEEEEEBCCSCG----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCH
T ss_pred cEEEEEEEEECCCC----CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCH
Confidence 59999999999632 234689999999999999999999999999999999999987 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+++ .||+||+.++.... ..+..+ +.++++..+ +++.+++.++. ...+||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LS 1173 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLS 1173 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSC
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHH----HHHHHHHhCcHHHHHhCccccccccCC-CCCccC
Confidence 2457999999998876 59999997653211 122222 334444443 44556666664 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.+...|.+.|+++. .|+|+|+||||+. .+ ..||||++|++|++++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998863 4899999999974 55 5599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1250 ~g~~~~l 1256 (1284)
T 3g5u_A 1250 HGTHQQL 1256 (1284)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-40 Score=336.63 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=167.2
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPG-----QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~G-----ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
+++++.|+. ...+++++||++.+| |++||+||||||||||+++|+|+++|+ +|+. . ..
T Consensus 350 ~~~~~~y~~------~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~ 412 (608)
T 3j16_B 350 ASRAFSYPS------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PK 412 (608)
T ss_dssp SSSCCEECC------EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CS
T ss_pred cceeEEecC------cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cC
Confidence 566677742 235789999999999 789999999999999999999999884 6752 1 12
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++|++|+.......||.+++.... .. ... ....+.++++.++|.+..++ ++.+|||||||||+|||
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iAr 480 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIVL 480 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHHH
T ss_pred CcEEEecccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHH
Confidence 45999999987666679999875422 11 111 12456789999999877665 46799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+||||++|++ |++++.|+++++.
T Consensus 481 aL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 999999999999999999999999999999999766699999999995 688999999999996 8999999987653
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9e-40 Score=329.91 Aligned_cols=194 Identities=23% Similarity=0.310 Sum_probs=156.0
Q ss_pred EEE-EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE---------EEC
Q 038004 66 LTW-KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI---------LIN 135 (330)
Q Consensus 66 l~~-~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I---------~~~ 135 (330)
.++ +||++.|. +...+|++|| +|++||++||+||||||||||+|+|+|+++|+ +|++ .++
T Consensus 21 ~~~~~~ls~~yg------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRYG------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp ---CCCEEEECS------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred hhHhcCcEEEEC------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 455 68999983 1124899999 99999999999999999999999999999874 5875 356
Q ss_pred CEeccc-------ccCcEEEEeCCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 136 GRKETL-------AFGTSAYVTQEDTLMTT---LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 136 g~~~~~-------~~~~i~~v~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
|..... ....+++++|...+++. .|+.+++.... ..+++.++++.+||.+..++.
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~--- 155 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE--- 155 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB---
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC---
Confidence 653211 12357899997544332 38888875310 113478899999998766654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ .++..+||+|++|
T Consensus 156 --~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~~~~~dri~vl 231 (538)
T 1yqt_A 156 --IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVLDYLSDIIHVV 231 (538)
T ss_dssp --GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 569999999999999999999999999999999999999999999999975 599999999995 6889999999999
Q ss_pred eCC
Q 038004 286 AYG 288 (330)
Q Consensus 286 ~~G 288 (330)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 864
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9e-40 Score=333.75 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=155.8
Q ss_pred EeEEEEecCCcccCCcc-ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE---------EECCEe
Q 038004 69 KDLSVVVPSGKKENRKH-AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI---------LINGRK 138 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~-~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I---------~~~g~~ 138 (330)
+||++.|. .. .+|++|| +|++||++||+||||||||||+|+|+|+++|+ +|++ .++|..
T Consensus 95 ~~ls~~yg-------~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRYG-------VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEECS-------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEEC-------CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEe
Confidence 77888872 23 4899999 99999999999999999999999999999874 5875 456654
Q ss_pred ccc-------ccCcEEEEeCCCCCCC---CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 139 ETL-------AFGTSAYVTQEDTLMT---TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 139 ~~~-------~~~~i~~v~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
... ....+++++|...+++ ..||.|++... . ..++++++++.+||.+..++. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----h
Confidence 211 1235788998754322 23899988531 0 013477899999998877764 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ ..+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCCEEEEECCC
Confidence 69999999999999999999999999999999999999999999999975 599999999995 5788999999999865
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.2e-38 Score=333.19 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=162.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|...|+++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+| |+| +|.+... .
T Consensus 434 ~~L~~~~ls~~yg-------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~ 494 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-E 494 (986)
T ss_dssp CEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-T
T ss_pred ceeEEeeEEEEEC-------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-c
Confidence 3577779999983 4579999999999999999999999999999999995 222 3332211 1
Q ss_pred CcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHH
Q 038004 144 GTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 144 ~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.+++|++|+. .+++.+||.|++.+ ... .. ++++.++++.+||. +..++. +.+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHHH
Confidence 2478999885 67889999999975 111 11 46788999999995 455554 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+.++..++++|++ .|.|||++|||+ .++..+||++++|++|+++ +.|+.++.
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999999999999999999999999999987 389999999995 6888999999999999997 68987654
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.8e-39 Score=332.46 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=135.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHH---------------------HHHHcCCCCCCC----CccEEEECCEec
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLL---------------------DALAGRLSSNTE----QTGEILINGRKE 139 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl---------------------~~l~Gl~~~~~~----~~G~I~~~g~~~ 139 (330)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888876410 145677776543
Q ss_pred cc-ccCcEEEEeCCCC-------------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHH------HHHHHHHHHc
Q 038004 140 TL-AFGTSAYVTQEDT-------------------LMTTLTVMEAVYYSAQLQLPDSMSRSEKR------ERAEMTIREM 193 (330)
Q Consensus 140 ~~-~~~~i~~v~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~~ 193 (330)
.. ....+++|+|.+. .++.+||.||+.+...+.... ....... .....+++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 1223444444332 346789999997743221110 0000000 1112458889
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 194 GLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 194 ~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
||.+. .++ ++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|+++++ .|.|||+||||
T Consensus 190 gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 190 GLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp TCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred CCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 99764 344 356999999999999999999998 9999999999999999999999999974 59999999999
Q ss_pred chHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 271 PSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+ ..+ ..||++++| ++|++++.|+++++
T Consensus 264 ~-~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 264 E-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp H-HHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 6 444 569999999 89999999997654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.2e-39 Score=339.50 Aligned_cols=209 Identities=24% Similarity=0.339 Sum_probs=162.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|+. ..+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|.
T Consensus 669 ~~mL~v~nLs~~Y~g-----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~~~~~----- 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG-----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN----- 735 (986)
T ss_dssp SEEEEEEEEEECCTT-----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEEECTT-----
T ss_pred CceEEEEeeEEEeCC-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEcCc-----
Confidence 468999999999842 125689999999999999999999999999999999999987 4799999863
Q ss_pred cCcEEEEeCCCCC----CCCCCHHHHHHHHHhhcC---------------------------------------------
Q 038004 143 FGTSAYVTQEDTL----MTTLTVMEAVYYSAQLQL--------------------------------------------- 173 (330)
Q Consensus 143 ~~~i~~v~Q~~~l----~~~lTv~e~l~~~~~~~~--------------------------------------------- 173 (330)
.+++|++|++.. ....|+.+++.+......
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 248899887521 223577777654210000
Q ss_pred -------------------CCCCC----------------------------------HHHHHHHHHHHHHHcCCCcc--
Q 038004 174 -------------------PDSMS----------------------------------RSEKRERAEMTIREMGLQDA-- 198 (330)
Q Consensus 174 -------------------~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~-- 198 (330)
...++ .....++++++++.+||...
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000 00113567889999999753
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.+++ +.+|||||||||+|||||+.+|++|||||||+|||+.+...+++.|+++ +.|||+||||+ .++..+
T Consensus 895 ~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l 964 (986)
T 2iw3_A 895 SHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNL 964 (986)
T ss_dssp HHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTT
T ss_pred cCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHh
Confidence 3443 4699999999999999999999999999999999999999888887543 57999999995 578899
Q ss_pred ccEEEEEeCCeEEEEcC
Q 038004 279 FHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~ 295 (330)
||++++|++|+++..|+
T Consensus 965 ~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 965 TEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCEEECCBTTBCCC---
T ss_pred CCEEEEEECCEEEEeCC
Confidence 99999999999988775
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.3e-37 Score=318.67 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=145.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH----------------------cCCCCCCCCccEEEECCEecccc
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA----------------------GRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~----------------------Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ .|.|.+++.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35799999999999999999999999999998764 33222 36777777543210
Q ss_pred ----------------------------------------------cCcEEEEeCCCCCCC-------------------
Q 038004 143 ----------------------------------------------FGTSAYVTQEDTLMT------------------- 157 (330)
Q Consensus 143 ----------------------------------------------~~~i~~v~Q~~~l~~------------------- 157 (330)
....++++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001234444333222
Q ss_pred -------------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHH
Q 038004 158 -------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 158 -------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.+||.||+.+.... ...+++.+.++.++|... .++ ++.+|||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHH
Confidence 47899998764321 123456778899999643 233 46799999999999999
Q ss_pred HHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEc
Q 038004 224 EILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFG 294 (330)
Q Consensus 224 aL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g 294 (330)
||+.+| ++|||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|++| ++|++++.|
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEec
Confidence 999887 59999999999999999999999999975 599999999996 454 679999999 899999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 634 ~~~~~ 638 (670)
T 3ux8_A 634 TPEEV 638 (670)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97654
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-36 Score=303.91 Aligned_cols=185 Identities=23% Similarity=0.298 Sum_probs=142.1
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEeccc-----ccCc--EE
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETL-----AFGT--SA 147 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~-----~~~~--i~ 147 (330)
..|++++ .+++||++||+||||||||||+|+|+|+++|+ +|+| .+.|..... .... ..
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 68999999999999999999999999999884 6987 233332110 0011 22
Q ss_pred EEeCCCCC------CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 148 YVTQEDTL------MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 148 ~v~Q~~~l------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+.+|.... .+..++.+++.... . ...++++++++.+||.+..++. +.+|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 33343211 12235555553211 0 1235688999999998877764 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ .++..+||+|++|++|..+
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDL-SVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCH-HHHHHHCSEEEEEESCTTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999974 589999999995 6899999999999987543
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4e-35 Score=295.75 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=136.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEeccc-------ccCcEEEEeCCCCCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETL-------AFGTSAYVTQEDTLM 156 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~-------~~~~i~~v~Q~~~l~ 156 (330)
+++||++||+||||||||||+|+|+|+++|+ +|+| .++|+++.. ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 3599999999999999999999999999884 6988 567754311 112244455543221
Q ss_pred ---CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 157 ---TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 157 ---~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
...++.+++.... .+++++++++.+++....++. +.+|||||||||+|||||+.+|++||
T Consensus 99 ~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 99 SKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp GTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2237877653210 123467889999998777664 56999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||++||+..+..++++|++++ + |.|||+||||+ .++..+||+|++|++|.
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDL-IVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred EECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeCh-HHHHhhCCEEEEecCCc
Confidence 999999999999999999999996 4 89999999996 68999999999998754
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.5e-34 Score=300.65 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=154.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC---------CCCC--CCcc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-GRL---------SSNT--EQTG- 130 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~---------~~~~--~~~G- 130 (330)
..|+++|++. ..|+||||+|++||++||+|+||||||||+++|+ |.+ .+.. ...|
T Consensus 628 ~~L~v~~l~~------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~ 695 (972)
T 2r6f_A 628 RWLEVVGARE------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL 695 (972)
T ss_dssp CEEEEEEECS------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECG
T ss_pred eEEEEecCcc------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccc
Confidence 5789998851 2599999999999999999999999999999864 221 1110 0123
Q ss_pred -----EEEECCEecccc------------------------cCcEEEEeCCCCCCC------------------------
Q 038004 131 -----EILINGRKETLA------------------------FGTSAYVTQEDTLMT------------------------ 157 (330)
Q Consensus 131 -----~I~~~g~~~~~~------------------------~~~i~~v~Q~~~l~~------------------------ 157 (330)
.|.++|.++... .+.+||++|...+++
T Consensus 696 ~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v 775 (972)
T 2r6f_A 696 EHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDV 775 (972)
T ss_dssp GGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCE
T ss_pred cccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccc
Confidence 478887654210 012466666543321
Q ss_pred ------------------------------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 158 ------------------------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 158 ------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
.+|+.|++.|... . .. ..++.++|+.+||.. ..++
T Consensus 776 ~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~----- 841 (972)
T 2r6f_A 776 YVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQ----- 841 (972)
T ss_dssp EEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTC-----
T ss_pred cccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccC-----
Confidence 3567777765321 1 11 234578999999976 4444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 207 NVRGVSGGQKRRVSICIEILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|+
T Consensus 842 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIi 918 (972)
T 2r6f_A 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYII 918 (972)
T ss_dssp CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEE
Confidence 35699999999999999999865 99999999999999999999999999974 599999999996 455 6899999
Q ss_pred EE------eCCeEEEEcChhh
Q 038004 284 LL------AYGKTIYFGPASM 298 (330)
Q Consensus 284 vl------~~G~iv~~g~~~~ 298 (330)
+| ++|++++.|++++
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHH
T ss_pred EEcCCCCCCCCEEEEecCHHH
Confidence 99 7899999999654
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-33 Score=294.12 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=147.4
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHH---------HHHHcCCCCCC---CCcc------EEEECCEeccc------
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLL---------DALAGRLSSNT---EQTG------EILINGRKETL------ 141 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl---------~~l~Gl~~~~~---~~~G------~I~~~g~~~~~------ 141 (330)
..|+||||+|++|++++|+|+||||||||+ +++.|...+.. ..+| .|.+++.++..
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 45554432211 0122 24444332110
Q ss_pred ----------------------------------------ccCcEEEEeCCCCCCC------------------------
Q 038004 142 ----------------------------------------AFGTSAYVTQEDTLMT------------------------ 157 (330)
Q Consensus 142 ----------------------------------------~~~~i~~v~Q~~~l~~------------------------ 157 (330)
.....|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012467777665544
Q ss_pred --------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 038004 158 --------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229 (330)
Q Consensus 158 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P 229 (330)
.+||.|++.|.... ....++.++|+.+||..... ++++.+|||||||||+|||||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~l----gq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKL----GQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBT----TCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhc----cCCccCCCHHHHHHHHHHHHHhhCC
Confidence 36788887664321 12356778999999964321 1246799999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 230 ---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 230 ---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
+||||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|++| ++|+|++.|++++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 79999999999999999999999999974 599999999996 455 569999999 8999999999754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-33 Score=296.32 Aligned_cols=213 Identities=22% Similarity=0.295 Sum_probs=153.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHH-HHcCCC-------CC---------
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDA-LAGRLS-------SN--------- 125 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~-l~Gl~~-------~~--------- 125 (330)
...|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++. +.
T Consensus 500 ~~~L~v~~l~~------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 500 AGWLELNGVTR------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp SCEEEEEEEEE------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred CceEEEEeeee------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 35799999963 15999999999999999999999999999996 776532 10
Q ss_pred ------CCCcc-------EEEECCEecccc-c---------------------------------------------CcE
Q 038004 126 ------TEQTG-------EILINGRKETLA-F---------------------------------------------GTS 146 (330)
Q Consensus 126 ------~~~~G-------~I~~~g~~~~~~-~---------------------------------------------~~i 146 (330)
...+| .|.++|.++... + +..
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 01256 688888654210 0 001
Q ss_pred EEEeCCCCCC------------------------CCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 038004 147 AYVTQEDTLM------------------------TTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDA-M 199 (330)
Q Consensus 147 ~~v~Q~~~l~------------------------~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~ 199 (330)
|++..+..++ ...++.|++.+... +..... ....+++.++|+.+||... .
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~~l 724 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYLRL 724 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTSBT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcccc
Confidence 1221111111 12344444321110 000001 1123468899999999763 3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
++ ++.+|||||||||+||++|+.+ |+||||||||+|||+..+..++++|+++++ .|.|||+||||+ .++
T Consensus 725 ~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl-~~i- 796 (842)
T 2vf7_A 725 GQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKM-QVV- 796 (842)
T ss_dssp TC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-
Confidence 33 4579999999999999999996 799999999999999999999999999974 599999999996 566
Q ss_pred HhccEEEEE------eCCeEEEEcChhh
Q 038004 277 ELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 277 ~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
..||+|++| ++|++++.|++++
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 789999999 7999999999653
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3.6e-33 Score=294.69 Aligned_cols=207 Identities=22% Similarity=0.283 Sum_probs=151.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-c----CCCCCCCCccE-------
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-G----RLSSNTEQTGE------- 131 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-G----l~~~~~~~~G~------- 131 (330)
..|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ | .+.+.....|.
T Consensus 646 ~~L~v~~l~~------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~ 713 (993)
T 2ygr_A 646 RQLTVVGARE------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGL 713 (993)
T ss_dssp SEEEEEEECS------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCC
T ss_pred ceEEEecCcc------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCc
Confidence 5799999841 2599999999999999999999999999999853 2 22211011233
Q ss_pred ------EEECCEecccc------------------------cCcEEEEeCCCCCCC------------------------
Q 038004 132 ------ILINGRKETLA------------------------FGTSAYVTQEDTLMT------------------------ 157 (330)
Q Consensus 132 ------I~~~g~~~~~~------------------------~~~i~~v~Q~~~l~~------------------------ 157 (330)
|.+++.++... .+..+|++|...+++
T Consensus 714 ~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v 793 (993)
T 2ygr_A 714 DYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDV 793 (993)
T ss_dssp TTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCE
T ss_pred cccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccc
Confidence 44454433100 012355655433221
Q ss_pred ------------------------------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 158 ------------------------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 158 ------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
.+||.|++.|... . .. ..++.++|+.+||.. ..++
T Consensus 794 ~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~----- 859 (993)
T 2ygr_A 794 YVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQ----- 859 (993)
T ss_dssp EEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTC-----
T ss_pred eeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccC-----
Confidence 2466666654321 1 11 234578999999975 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 207 NVRGVSGGQKRRVSICIEILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
.+.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|+++++ .|.|||+||||+ .++ ..||+|+
T Consensus 860 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIi 936 (993)
T 2ygr_A 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNL-DVI-KTSDWII 936 (993)
T ss_dssp CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEE
Confidence 45699999999999999999865 99999999999999999999999999974 599999999996 455 6899999
Q ss_pred EE------eCCeEEEEcChhhH
Q 038004 284 LL------AYGKTIYFGPASMT 299 (330)
Q Consensus 284 vl------~~G~iv~~g~~~~~ 299 (330)
+| ++|++++.|+++++
T Consensus 937 vL~p~gg~~~G~Iv~~G~~~el 958 (993)
T 2ygr_A 937 DLGPEGGAGGGTVVAQGTPEDV 958 (993)
T ss_dssp EEESSSTTSCSEEEEEECHHHH
T ss_pred EECCCcCCCCCEEEEecCHHHH
Confidence 99 68999999997654
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.98 E-value=1.5e-31 Score=260.55 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=143.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----------------------------------CCCcc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-----------------------------------TEQTG 130 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-----------------------------------~~~~G 130 (330)
.++++++|++.+| +++|+||||||||||+++|.++.... ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 99999999999999999998877521 01368
Q ss_pred EEEECCEeccc------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhc-----------------------CCCC----C
Q 038004 131 EILINGRKETL------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ-----------------------LPDS----M 177 (330)
Q Consensus 131 ~I~~~g~~~~~------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~-----------------------~~~~----~ 177 (330)
++++||++... ....+.+++|++.++.. +..+...|.-... .... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987642 11238999998865543 4443333211100 0000 0
Q ss_pred ------------------------------CHHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 038004 178 ------------------------------SRSEKRERAEMTIREMGLQDAM----------------DT---RIGG--- 205 (330)
Q Consensus 178 ------------------------------~~~~~~~~v~~~l~~~~L~~~~----------------~~---~~~~--- 205 (330)
........+.+.++.+++.... ++ .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0001123345556666664310 00 0100
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 206 ---WNVRG-VSGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 206 ---~~~~~-LSGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+.. |||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|++++ + |.+||+|||++ . +..+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~-~-~~~~~ 362 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA-Q-IAARA 362 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCH-H-HHTTC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcH-H-HHhhc
Confidence 11112 7999999999999999999 9999999999999999999999999996 3 89999999995 3 45789
Q ss_pred cEEEEE----eCCeEEEEc
Q 038004 280 HNLCLL----AYGKTIYFG 294 (330)
Q Consensus 280 d~v~vl----~~G~iv~~g 294 (330)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-35 Score=291.48 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=145.9
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-E-EEECCEecccccCcEEEEeCCCC---CCCCCCHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-E-ILINGRKETLAFGTSAYVTQEDT---LMTTLTVMEA 164 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~-I~~~g~~~~~~~~~i~~v~Q~~~---l~~~lTv~e~ 164 (330)
++||++++|++++|+||||||||||+|+|+|+..+ .+| + |+++|. ..+.++|+||+.. +++.+|+.||
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~en 202 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQLP 202 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC----ccCCeeeeccchhhcccccccchhhh
Confidence 79999999999999999999999999999999976 479 8 999983 2356899999984 4456799998
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-C
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE--ILTRPKL----LFLDE-P 237 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra--L~~~P~l----lllDE-P 237 (330)
+ |+...... .. ..+++.++++.+||.+..+ +.+|||||||||+|||| |+.+|++ ||||| |
T Consensus 203 i-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 203 T-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp T-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred h-cccccccC--cc---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 8 65432111 00 1234566788889876654 35899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch--H---HHHHhccE-----EEEEe-CCeEEEEcChhhH
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS--S---DVFELFHN-----LCLLA-YGKTIYFGPASMT 299 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~--~---~i~~~~d~-----v~vl~-~G~iv~~g~~~~~ 299 (330)
|++||+. ...+.++ .++.+.|+|+++|+.. . ++..+||+ |++|+ +|+++ .|++++.
T Consensus 270 ts~LD~~-~~~l~~l----~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHI----IEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHH----HHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHH----HHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999998 4444443 3345789999999953 1 66789999 99999 99999 8887544
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=6.3e-28 Score=232.54 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=75.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKRRVSICIEIL------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+|||||||||+||+||+ .+|++|||||||+|||+..+..++++|++++ +.|.|||+||||+ .. ...||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-~~g~tvi~itH~~-~~-~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDR-EF-SEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG-GSSSEEEEEESCH-HH-HTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEecch-HH-HHhCC
Confidence 46799999999999999999 7999999999999999999999999999997 4599999999996 34 77899
Q ss_pred EEEEEeCCeEEE
Q 038004 281 NLCLLAYGKTIY 292 (330)
Q Consensus 281 ~v~vl~~G~iv~ 292 (330)
++++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=4.7e-32 Score=242.13 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE--ecccccCcEEEEeCCCCCCCCC
Q 038004 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--KETLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 82 ~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~--~~~~~~~~i~~v~Q~~~l~~~l 159 (330)
++.+.+|+|| ++||+++|+||||||||||+++|+|+ +| ++|+|..... +.....+.++|++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3456789996 89999999999999999999999999 77 3688842111 1111235699999986
Q ss_pred CHHHHH-HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 038004 160 TVMEAV-YYSA----QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234 (330)
Q Consensus 160 Tv~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llll 234 (330)
.||+ .+.. .+.. ... .++++++++. ++ ||||||+|||||+.+|++|||
T Consensus 76 --~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllL 128 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVIL 128 (208)
T ss_dssp ------CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEE
T ss_pred --HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEE
Confidence 3343 2211 1110 001 1234555543 22 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
||||++ ++..++++|+++ + .|.||| +|||+
T Consensus 129 DEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 129 DEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp CSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred eCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 999999 788899999887 3 489999 99995
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.95 E-value=7e-29 Score=214.22 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=103.1
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCC-CCCCCHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTL-MTTLTVMEAVYYS 168 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l-~~~lTv~e~l~~~ 168 (330)
||||++++||+++|+||||||||||+|++.+ |...+++.. ..++++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999653 222222111 12567776531 00001111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA---- 244 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~---- 244 (330)
... ......+.....+.. ...|||||||++|||||+.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 122234555444432 357999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 245 ------------ASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 245 ------------~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.+..+++.|++++++ |.|+|++|||+ .++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH-HHhh
Confidence 568899999988766 99999999995 4454
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=5.8e-27 Score=221.86 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.+.+||||||||++||+||+ .+|++|||||||++||+..+..++++|+++. + |.+||++||++ .+..+||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~--~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK--IVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT--TGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCH--HHHhhCceE
Confidence 45699999999999999997 6899999999999999999999999999984 3 78999999995 367889986
Q ss_pred --EEEeCCeE-EEEcChh
Q 038004 283 --CLLAYGKT-IYFGPAS 297 (330)
Q Consensus 283 --~vl~~G~i-v~~g~~~ 297 (330)
++|.+|.. +.....+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 78888764 4444433
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=4.2e-30 Score=250.97 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=141.9
Q ss_pred cceEEeeEEEEeCCc--------------------EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 85 HAILQELTGYVEPGQ--------------------ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 85 ~~iL~~vsl~i~~Ge--------------------i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t~--- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVTM--- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC----C---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecce---
Confidence 468999999999999 99999999999999999999999874 6999999876431
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG--QKRRVSIC 222 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG--qrQRv~IA 222 (330)
.+|++|++ .++.+|+.|++.++. . +.+++++++.+++.+.. .. + .|||| |+||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~-----~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FF-----I-IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EE-----E-EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-Ce-----E-EeCCCCccHHHHHHH
Confidence 27899985 567889888774431 0 12467889999986542 22 2 29999 99999999
Q ss_pred HHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CceEEEEEcCchH-HHHHhccEEE
Q 038004 223 IEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----ED----GITVVASIHQPSS-DVFELFHNLC 283 (330)
Q Consensus 223 raL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~----g~tvi~itHd~~~-~i~~~~d~v~ 283 (330)
++|+. +|++++|||||+|||+..+.++++.|+++.+ +. ..+|++++|++.. .+..+||++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 9999999999999999999999999999852 22 3678899998542 2888999885
Q ss_pred -EEeCCe
Q 038004 284 -LLAYGK 289 (330)
Q Consensus 284 -vl~~G~ 289 (330)
.|..|+
T Consensus 249 ~~Lpeg~ 255 (413)
T 1tq4_A 249 SDLPIYK 255 (413)
T ss_dssp HHSCGGG
T ss_pred HhCccch
Confidence 565665
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=7.2e-31 Score=233.06 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=121.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-ccccCcEEEEeCCCCCCCCCCHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
...++.| .+|++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+. ....+.++|+||++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 3457888 79999999999999999999999999999852 122222222111 11224589999998888888887
Q ss_pred HHHHHHHhhcC---CCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 163 EAVYYSAQLQL---PDSMSRSEKRERAEMT------IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 163 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
+++.+...... ....+..+.++++.+. ++.+|+....+. ++++|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77632211100 0012344555566655 556666544443 345787 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 234 LDEPTSGL----DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 234 lDEPtsgL----D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|||||+++ |+..+..+++++++++++.|.|+|++|||+ .++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 788999999999999766689999999995 68999999999984
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=5.7e-27 Score=204.19 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=101.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c--cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T--LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~--~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
.++|+||||||||||+++|+|++. |.++|... . ....+++|++|++ ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 23344321 1 2235689999976 222222 0 0000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE-----ILTRPKLLFLDE--PTSGLDSAASY 247 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra-----L~~~P~llllDE--PtsgLD~~~~~ 247 (330)
... .+..++ ++.+||||||||++||+| |+.+|++||||| ||++||+..+.
T Consensus 64 --~~~----------------~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~ 120 (178)
T 1ye8_A 64 --FTS----------------KKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120 (178)
T ss_dssp --CCC----------------SSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHH
T ss_pred --CCc----------------cccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHH
Confidence 000 012222 456899999999999996 999999999999 99999999998
Q ss_pred HHHHHHHHHHhcCCceEEEEEc---CchHHHHHhccEEEEEeCCeEEEE
Q 038004 248 HVMKRIVNLAHEDGITVVASIH---QPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~itH---d~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
.+.+.|.+ .+.|+|+++| + ...+..+|++ .+|++++.
T Consensus 121 ~l~~~l~~----~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 121 LVRQIMHD----PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp HHHHHHTC----TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEEC
T ss_pred HHHHHHhc----CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEEe
Confidence 88887754 4677888885 7 4688889998 55666653
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.93 E-value=9.5e-28 Score=225.73 Aligned_cols=173 Identities=20% Similarity=0.173 Sum_probs=134.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCC-C
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDT-L 155 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~-l 155 (330)
++.+||++++|++++|+||||||||||+++|+|++++. +|+|.++|.+.... ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999998763 69999999764211 125899999998 8
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEE
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLF 233 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--lll 233 (330)
+|.+|+++++.++.... .. ..+++.+|+.+..++. +.+|| |||++|||||+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEE
Confidence 99999999998764211 10 1245667776655543 45899 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc--------hHHHHHhccEEEEEeCCeE
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP--------SSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~--------~~~i~~~~d~v~vl~~G~i 290 (330)
|| ||+|||+..+. +++.++.|.|+|++||.. ...+....+.|.++..|+.
T Consensus 227 LD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 99999987552 455545689999999931 2455567789999999865
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=8.3e-31 Score=246.50 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=129.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.|+++||++.|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~--------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------- 155 (305)
T ss_dssp HHHHTTCCHHHH--------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE-----------
T ss_pred eEEEEEEEEEcC--------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE-----------
Confidence 478899998883 46899999999999999999999999999999999997 38883
Q ss_pred cEEEEeCCCCCCCCCCHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVME-AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
+|++|++.++.. |+.+ |+.+... .+. .+.+.++.+ |++.++ +..|||||||| ||
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---AR 210 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AA 210 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CC
T ss_pred --EEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HH
Confidence 356788877764 7776 7654311 111 344556664 555444 35899999999 99
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~ 303 (330)
||+.+|+||| |++||+.+...|.. ++|++. ....||+| +|++|++++.|+.++....|
T Consensus 211 All~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 211 VQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 9999999999 99999998887752 289864 45789999 99999999999987765555
Q ss_pred H
Q 038004 304 A 304 (330)
Q Consensus 304 ~ 304 (330)
.
T Consensus 269 ~ 269 (305)
T 2v9p_A 269 V 269 (305)
T ss_dssp H
T ss_pred H
Confidence 4
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.91 E-value=2e-26 Score=221.30 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=135.9
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCC-CC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDT-LM 156 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~-l~ 156 (330)
..+||++++|++++|+||||||||||+++|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999998763 69999999764211 135899999988 89
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFL 234 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llll 234 (330)
|.+|+++++.++.... .. ..+++.+|+.+..++. +.+|| +||++|||||+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999998764211 10 1245667776655543 45899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC--------chHHHHHhccEEEEEeCCeE
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ--------PSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd--------~~~~i~~~~d~v~vl~~G~i 290 (330)
| ||+|||+..+. +.+.+..|.|+|++||. ..+.+......|.++..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999987653 44554568999999993 12455667789999988864
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=6.4e-29 Score=222.82 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=111.3
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc------ccCcEEEEeCCCCCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~------~~~~i~~v~Q~~~l~~~ 158 (330)
+.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|+||++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 88998 754321 12458899998866654
Q ss_pred CCH-HHHHHHH---HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCC
Q 038004 159 LTV-MEAVYYS---AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI-----CIEILTRP 229 (330)
Q Consensus 159 lTv-~e~l~~~---~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I-----AraL~~~P 229 (330)
++. .+++.+. ...+ +.+ ...++++++...+. ..+ .+|||||+||++| |++|+..|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 321 1111110 1110 111 13456666654321 111 3799999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCceEEEEEcCchHHHHHhccEE
Q 038004 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHE------DGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 230 ~llllDEPtsgLD~~~~~~i~~~L~~l~~~------~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++++|||||+++|..+...|.+.|.++.++ .+...|+++|++ .++...++++
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~i 204 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNY 204 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHH
Confidence 999999999999998888888888877543 345556666663 3444444443
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=2.4e-27 Score=233.54 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=148.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE---ecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~---~~~ 140 (330)
+.++++++++.|.+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.++ ..|.|.++|+ +..
T Consensus 130 ~~l~~~~v~~~~~t------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCCC------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEEEEESCCHHHHH
T ss_pred CceEEeccceecCC------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEeceecHHHH
Confidence 46889999988842 35699999 99999999999999999999999999999987 4799999997 321
Q ss_pred c----------ccCcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 L----------AFGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 ~----------~~~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
. ..+.++|++|+ ..+++++|+.+|+.+.+...... .+ .....++. +.
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~------l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS------LT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC------HH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh------HH
Confidence 1 12568999995 55678889999987765432100 00 00111121 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----eEEEEEcCchHHHHHhccE
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH---EDGI-----TVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~---~~g~-----tvi~itHd~~~~i~~~~d~ 281 (330)
.||+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 799999 999999 889988 999999999999999999865 2374 9999999964 578999
Q ss_pred EEEEeCCeEEEEcChh
Q 038004 282 LCLLAYGKTIYFGPAS 297 (330)
Q Consensus 282 v~vl~~G~iv~~g~~~ 297 (330)
+++|.+|+++..++++
T Consensus 325 v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLA 340 (438)
T ss_dssp HHHHSSEEEEECHHHH
T ss_pred EEEEeCcEEEEeCCHH
Confidence 9999999999988743
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=2.3e-28 Score=230.95 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=130.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEE-----------------------EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGY-----------------------VEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~-----------------------i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+
T Consensus 43 ~i~~~~v~~~y~---------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 43 QIDLLEVEEVYL---------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeehhhhhh---------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 588999998882 344444443 799999999999999999999999999
Q ss_pred CCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 038004 122 LSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201 (330)
Q Consensus 122 ~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~ 201 (330)
+++. .|. ..++||+|++.+++. |+.||+.+.... +.......+.+.++++.++ ....+.
T Consensus 114 l~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~d~~~~~~~L~~l~-~~~~~~ 172 (312)
T 3aez_A 114 LARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESYNRRALMRFVTSVK-SGSDYA 172 (312)
T ss_dssp HHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGBCHHHHHHHHHHHH-TTCSCE
T ss_pred cccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHHHHHHHHHHHHHhC-CCcccC
Confidence 8763 342 358999999999888 999998542111 1222333456778888887 444334
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 202 ~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
. +..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+..+. .|+++|+........++|
T Consensus 173 ~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 173 C-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp E-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHHHHHHHHHH
T ss_pred C-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHHHHHHHHHH
Confidence 3 34899999999999999999999999999999998521 122223344 466777754444556777
Q ss_pred EEEEeCCe
Q 038004 282 LCLLAYGK 289 (330)
Q Consensus 282 v~vl~~G~ 289 (330)
.+.+.+|.
T Consensus 239 ~~~~rd~~ 246 (312)
T 3aez_A 239 FLAMRTTA 246 (312)
T ss_dssp HHHHTTTG
T ss_pred HHHHHhcc
Confidence 76666543
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=4.6e-26 Score=210.97 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=94.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 177 (330)
.++|+||||||||||+|+|+|+..|. +|+|.++|++... ..+.++|++|++.+++.+||.|++.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--H
Confidence 47999999999999999999999874 6999999986532 235699999999999999999999876543211 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 178 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
. .+.+.+.++ ....+.. +.+||||||||++||||++. ++++|||+.+||+.. .++++.++
T Consensus 79 ~----~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 122333332 1222222 35899999999999999886 999999999999876 45566665
Q ss_pred hcCCceEEEEEcCc
Q 038004 258 HEDGITVVASIHQP 271 (330)
Q Consensus 258 ~~~g~tvi~itHd~ 271 (330)
+ . .+||++.|..
T Consensus 139 ~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 K-V-VNIIPVIAKA 150 (270)
T ss_dssp T-T-SEEEEEETTG
T ss_pred h-c-CcEEEEEecc
Confidence 3 3 7888888873
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.89 E-value=4.1e-23 Score=198.34 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 207 NVR-GVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 207 ~~~-~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||. . .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~-- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P-- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T--
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c--
Confidence 455 79999999999999999 8999999999999999999999999997763 699999995 4 2
Q ss_pred HhccEEEEEeCCeEEEEcChhh
Q 038004 277 ELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 277 ~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
.||++++|++|+++..|++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEM 353 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTT
T ss_pred -cCCEEEEEECCEEEecCCHHH
Confidence 899999999999999998754
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=1.5e-24 Score=202.17 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=120.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEEECCEeccc--ccCcEEEEeCCCCCCCCCCH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EILINGRKETL--AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv 161 (330)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ...++.++++...+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 45799999999999999999999999999999999998653 36 66553322111 01122223332211 22
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC-
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEILTRPKLLFLDEPTS- 239 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~~~P~llllDEPts- 239 (330)
.+++.... + +..+..+.+.++++..++. ... .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~-----~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYD-----SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EEC-----CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE--EEC-----CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333221 1 1122333444444332321 111 124689999 66666 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhcCCceEEEEEcCc-hH--------------------HHHHhccEEEEEeCCeE
Q 038004 240 --G---LDS-AASYHVMKRIVNLAHEDGITVVASIHQP-SS--------------------DVFELFHNLCLLAYGKT 290 (330)
Q Consensus 240 --g---LD~-~~~~~i~~~L~~l~~~~g~tvi~itHd~-~~--------------------~i~~~~d~v~vl~~G~i 290 (330)
+ +|. .....+++.|++++++.|+|||+++|+. .. .+.++||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999877799999999994 12 57789999999998874
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.88 E-value=8.8e-25 Score=207.90 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=104.6
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
+++++||.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+... ....++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999874 6999998853110 011122211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
+ |||+||++||+||..+|++||+||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 1 8999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++++.|+.+. ..+.|+|+++|++ + +...|||+++|.+|.
T Consensus 253 ----e~~~~l~~~~-~g~~tvi~t~H~~-~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ----EAYDFYNVLC-SGHKGTLTTLHAG-S-SEEAFIRLANMSSSN 291 (330)
T ss_dssp ----HHHHHHHHHH-TTCCCEEEEEECS-S-HHHHHHHHHHHHHTS
T ss_pred ----HHHHHHHHHh-cCCCEEEEEEccc-H-HHHHhhhheehhcCC
Confidence 3566777775 3345899999996 3 778999999999885
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.88 E-value=5.8e-22 Score=188.79 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=68.9
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+||||||| |+++|++|+.+|++|||||||++||+..+..++++|+++.+ .|.+||++|||+ .+...||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChH--HHHHhCC
Confidence 46799999999 67788888899999999999999999999999999999864 488999999994 3678999
Q ss_pred EEEEEe
Q 038004 281 NLCLLA 286 (330)
Q Consensus 281 ~v~vl~ 286 (330)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=1.6e-24 Score=197.09 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=107.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
+++.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|+. +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 444444 1235699999985 77789999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD 242 (330)
+++.+........ .......+.+.+.++.+ .+..+.. +..||+||+||+++ ++++.+|+++|+|||....+
T Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9987654321110 01111123344555543 2223333 45899999999988 68889999999999988887
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 243 ~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
.. +.++ .+.+|++++|+.......+++++ .+|+
T Consensus 148 ~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 53 1222 37899999997433334455544 5564
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=6.3e-24 Score=227.49 Aligned_cols=169 Identities=21% Similarity=0.201 Sum_probs=122.3
Q ss_pred ceeEEEEe-----EEEEecCCcccCCccceEEeeEEEEeC-------CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 63 GVFLTWKD-----LSVVVPSGKKENRKHAILQELTGYVEP-------GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 63 ~~~l~~~n-----l~~~~~~~~~~~~~~~iL~~vsl~i~~-------Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
...|+++| |++.|. ++..+++||+|.+++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------
T ss_pred CceEEEEeccccEEEEEec------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------
Confidence 34799999 888873 235689999999987 999999999999999999999 98742
Q ss_pred EEEECCEecccccCcEE-EEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 131 EILINGRKETLAFGTSA-YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 131 ~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
..++| ||||++. .++|.++|.. + +|+.+.... ...
T Consensus 815 ------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~s 850 (1022)
T 2o8b_B 815 ------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GES 850 (1022)
T ss_dssp ------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------C
T ss_pred ------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chh
Confidence 01344 8999763 3455554410 1 122111111 123
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAAS-YHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~-~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|+++++ +++|++++.+|+++|||||++|+|+... ..++++|+.++++.|.++|++||++ ..+..+||++.+++ |
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~~-g 927 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVRL-G 927 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEEE-E
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceeec-C
Confidence 67887775 9999999999999999999999999874 5578999999755589999999995 57788899988874 8
Q ss_pred eEE
Q 038004 289 KTI 291 (330)
Q Consensus 289 ~iv 291 (330)
++.
T Consensus 928 ~~~ 930 (1022)
T 2o8b_B 928 HMA 930 (1022)
T ss_dssp EEE
T ss_pred eEE
Confidence 876
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.87 E-value=2e-22 Score=202.36 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=70.4
Q ss_pred CCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 207 NVRGV-SGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 207 ~~~~L-SGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
.+..| ||||+|||+||++|+.+| ++|||||||+|||+..+..|.++|+++++ |.|||+|||++ . +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~-~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA-Q-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH-H-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEE
Confidence 45677 999999999999999999 99999999999999999999999999974 79999999995 4 445799999
Q ss_pred EEeCC
Q 038004 284 LLAYG 288 (330)
Q Consensus 284 vl~~G 288 (330)
+|+++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99554
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.87 E-value=8.1e-23 Score=205.53 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=118.2
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
++.|++|++++|+|+||||||||+++++|+..+. |. +.+.|++|++. ..+.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 4589999999999999999999999999987652 42 11456677641 1222222 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HH
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA-----AS 246 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~-----~~ 246 (330)
.+. +.+ +...|+....+. ++.+|||||+||+++|+++..+|++||+| ||++||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 111 234555444333 46789999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEeCCe
Q 038004 247 YHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 247 ~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~~G~ 289 (330)
..+.++++.++ +.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999886 56999999999961 35678999999999886
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2.1e-22 Score=212.86 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=119.1
Q ss_pred HHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC-CC-H---HHHHHHHHH
Q 038004 114 LLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS-MS-R---SEKRERAEM 188 (330)
Q Consensus 114 Ll~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~-~---~~~~~~v~~ 188 (330)
...|..+++.+ ..++|.++|+++.. +..+++.+++.|...+..... .. . ....++..+
T Consensus 384 C~~C~g~rl~~---~~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNR---EALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCT---TGGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCCh---HhcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 33444555555 36889999886521 234677888776543322110 00 0 011123456
Q ss_pred HHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Q 038004 189 TIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265 (330)
Q Consensus 189 ~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi 265 (330)
.|..+||... +++ .+.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|++++ +.|.|||
T Consensus 447 ~L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~Tvi 520 (916)
T 3pih_A 447 FLVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVI 520 (916)
T ss_dssp HHHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEE
T ss_pred HHHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEE
Confidence 7888999754 344 356999999999999999999887 999999999999999999999999997 4599999
Q ss_pred EEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 266 ASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 266 ~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+||||+ ..+ ..||+|++| ++|++++.|+++++
T Consensus 521 vVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 521 VVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp EECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred EEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 999995 455 459999999 89999999997654
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.87 E-value=1.2e-24 Score=208.21 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=136.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++++++.|.+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~ 113 (347)
T 2obl_A 44 DPLLRQVIDQPFIL------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVN 113 (347)
T ss_dssp CSTTCCCCCSEECC------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHH
T ss_pred CCeeecccceecCC------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHH
Confidence 36788999998842 35699999 999999999999999999999999999999874 6999998864110
Q ss_pred ----------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 ----------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.+.+++|.+. ...+.+...... ..+.+.+...+ .+... .+ ..+..|
T Consensus 114 ~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~~~~l 172 (347)
T 2obl_A 114 EFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DSVTRY 172 (347)
T ss_dssp HHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ETHHHH
T ss_pred HHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hhHHHH
Confidence 1134677777432 223332211100 00111111111 01100 00 124589
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----eEEEEEcCchHHHHHhccEEEEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH-EDGI-----TVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~itHd~~~~i~~~~d~v~vl 285 (330)
|+|| |||++| +.+|++ |+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|
T Consensus 173 S~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i 239 (347)
T 2obl_A 173 ARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSI 239 (347)
T ss_dssp HHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHH
T ss_pred HHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEe
Confidence 9999 999999 688887 999999999999999999864 4587 9999999974 5789999999
Q ss_pred eCCeEEEEcChh
Q 038004 286 AYGKTIYFGPAS 297 (330)
Q Consensus 286 ~~G~iv~~g~~~ 297 (330)
.+|+++..++.+
T Consensus 240 ~dG~Ivl~~~l~ 251 (347)
T 2obl_A 240 LDGHIVLTRELA 251 (347)
T ss_dssp CSEEEEBCHHHH
T ss_pred eCcEEEEeCCHH
Confidence 999999988753
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=2.7e-25 Score=223.63 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=116.8
Q ss_pred ccceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCC
Q 038004 84 KHAILQELTG-YVEPGQILAIMGPSGCGKSTLLDA--LAGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLM 156 (330)
Q Consensus 84 ~~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~--l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~ 156 (330)
+..+|++|+| .|++|++++|+||||||||||+++ ++|+.+|. +|.|+++|++... ..+.++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4678999999 999999999999999999999999 78998763 6999999976321 124578999875422
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
+. +.+ ..... . ....++++.++|.+..++. +.+|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--D-----PEGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--c-----cchhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECC
Confidence 11 100 00000 0 0011122223333222222 2356665 578999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHH--------HHHhccEEEEEeC
Q 038004 237 PTS-----GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSD--------VFELFHNLCLLAY 287 (330)
Q Consensus 237 Pts-----gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~--------i~~~~d~v~vl~~ 287 (330)
||+ +||+..+..++++++.+++ .|+|||++||++... +..+||+|++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999975 599999999997432 3566999999998
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.85 E-value=1.3e-22 Score=215.07 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=115.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHH--------HcCCCCCCCCccEEEECC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--------AGRLSSNTEQTGEILING 136 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l--------~Gl~~~~~~~~G~I~~~g 136 (330)
.+++++....+-... .+...+++||+|++.+|++++|+||||||||||||+| +|..-|. .+..
T Consensus 631 ~i~i~~~rHP~le~~--~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~---- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ--DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE---- 701 (934)
T ss_dssp EEEEEEECCTTTTTC----CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE----
T ss_pred ceEeecCccchhhhc--CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc----
Confidence 466666543331111 1245689999999999999999999999999999999 4443321 1100
Q ss_pred EecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 137 RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 137 ~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
++++ ..+ +..+|+.+.. ...+|+|++
T Consensus 702 ---------~~~~---d~i----------------------------------~~~ig~~d~l--------~~~lStf~~ 727 (934)
T 3thx_A 702 ---------VSIV---DCI----------------------------------LARVGAGDSQ--------LKGVSTFMA 727 (934)
T ss_dssp ---------EECC---SEE----------------------------------EEECC-----------------CHHHH
T ss_pred ---------chHH---HHH----------------------------------HHhcCchhhH--------HHhHhhhHH
Confidence 1100 000 1111221111 136888888
Q ss_pred HHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 217 RRVSICIEI--LTRPKLLFLDEPTSGLDSAASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 217 QRv~IAraL--~~~P~llllDEPtsgLD~~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
+++.+|++| +.+|+++||||||+|+|+.....+ +.+++.++++.|.++|++||+. .+..+||++..+.+|++.+.
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~ 805 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTAL 805 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEE
Confidence 888888888 999999999999999999988888 6777778755699999999994 46689999999999998765
Q ss_pred cCh
Q 038004 294 GPA 296 (330)
Q Consensus 294 g~~ 296 (330)
+..
T Consensus 806 ~~~ 808 (934)
T 3thx_A 806 TTE 808 (934)
T ss_dssp EET
T ss_pred ecC
Confidence 543
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=6.5e-21 Score=200.94 Aligned_cols=130 Identities=22% Similarity=0.359 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSR----------SEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
..+||.|++.|...+. ++. ++..+++ +.|+.+||... +++. +.+|||||+|||+||++|
T Consensus 450 ~~ltV~e~~~f~e~l~----l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~-----~~tLSGGEkQRV~LA~aL 519 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE----LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRS-----AGTLSGGEAQRIRLATQI 519 (972)
T ss_dssp HTSBHHHHHHHHHHCC----CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSB-----GGGCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCc-----cccCCHHHHHHHHHHHHH
Confidence 4589999999976553 233 2345555 45899999754 4543 569999999999999999
Q ss_pred hcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChh
Q 038004 226 LTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPAS 297 (330)
Q Consensus 226 ~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~ 297 (330)
..+| ++|||||||++||+.....++++|++++ +.|.|||+|+||+ ..+ ..||+|++| ++|++++.|+++
T Consensus 520 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~ 596 (972)
T 2r6f_A 520 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPE 596 (972)
T ss_dssp TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence 9985 9999999999999999999999999996 5799999999995 455 579999999 789999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 597 e~ 598 (972)
T 2r6f_A 597 EV 598 (972)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.85 E-value=7.4e-23 Score=182.17 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=95.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC----CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT----EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~----~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||+++|+|+..+.. ...|.|++++.... ...++++++|...+++. |+.+|+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~- 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV- 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE-
Confidence 3689999999999999999999999999654321 01235555543210 00122233333222221 22222211
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhc-------CCCEEEEeCCCCC
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEILT-------RPKLLFLDEPTSG 240 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~~-------~P~llllDEPtsg 240 (330)
...+++++ ++.+..+++++. +|++|++||||++
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 97 ---------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ---------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ---------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 01233333 333555555555 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHhcCCceEEEEEcCc---hHHHHHhccEEEEEeCC
Q 038004 241 LDSA-------A-----SYHVMKRIVNLAHEDGITVVASIHQP---SSDVFELFHNLCLLAYG 288 (330)
Q Consensus 241 LD~~-------~-----~~~i~~~L~~l~~~~g~tvi~itHd~---~~~i~~~~d~v~vl~~G 288 (330)
+|+. . ...+++.|.+++++.|+|||++||.. ...+...||++++|++|
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9983 2 23788888888777799999999943 23478899999999875
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=9.6e-21 Score=200.24 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=107.6
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHH
Q 038004 155 LMTTLTVMEAVYYSAQLQLPDSMSR----------SEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 155 l~~~lTv~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
-+..+||.|.+.|...+. ++. .+..+++ +.|..+||... +++ .+.+|||||+|||+||+
T Consensus 465 q~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r-----~~~tLSGGEkQRV~LA~ 534 (993)
T 2ygr_A 465 EVCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSR-----AAATLSGGEAQRIRLAT 534 (993)
T ss_dssp CSSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTC-----BGGGCCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCC-----CcccCCHHHHHHHHHHH
Confidence 345689999998854432 233 2344555 35888999754 444 35699999999999999
Q ss_pred HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcC
Q 038004 224 EILTR--PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGP 295 (330)
Q Consensus 224 aL~~~--P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~ 295 (330)
+|..+ |++|||||||++||+.....++++|++++ +.|.|||+|+||+ ..+ ..||+|++| ++|++++.|+
T Consensus 535 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl-~~i-~~ADrIi~Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHDE-DTI-EHADWIVDIGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp HHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCH-HHH-HTCSEEEEECSSSGGGCCSCCEEEC
T ss_pred HHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCCH-HHH-HhCCEEEEecCccccCCCEEEEeeC
Confidence 99998 59999999999999999999999999997 5699999999995 455 579999999 7899999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 612 ~~e~ 615 (993)
T 2ygr_A 612 YDEL 615 (993)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=4.7e-24 Score=188.60 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=116.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCC--CCCCHHHHHHHHHhhc
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM--TTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~~~ 172 (330)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999998632 478999998776 56799888654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------C
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ----KRRVSICIEILTRPKLLFLDEPTSG-------L 241 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq----rQRv~IAraL~~~P~llllDEPtsg-------L 241 (330)
.......+++.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 ----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp ----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11122235577788888887665553 35899996 4789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|+.....+.+.+.+..++.|.|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999998865566899999999843
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.83 E-value=3e-22 Score=180.40 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHH--cCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCCCCCCHHHHHHH
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALA--GRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLMTTLTVMEAVYY 167 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~--Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~lTv~e~l~~ 167 (330)
.|++|++++|+||||||||||+++|+ |+..+. .|.+.+++..... ..+.++|++|+...++.+++.++...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 68999999999999999999999999 663332 4667776643211 11234555554433333333332211
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD----- 242 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD----- 242 (330)
.... ...... .. ....+.++..+...+..-..+|+++++||||++||
T Consensus 103 ~~~~----------~~~~~~-------------~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGL----------PSEEKF-------------VL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cccc----------ccccce-------------ec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 1000 000000 00 11234555555555555578999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH---------HHhc-cEEEEEe
Q 038004 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDV---------FELF-HNLCLLA 286 (330)
Q Consensus 243 ~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i---------~~~~-d~v~vl~ 286 (330)
+..+..+.++++.+++ .|+|||++||++. .+ ..+| |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 6777779999988864 5999999999964 55 5788 9999995
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.82 E-value=3e-21 Score=204.27 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=99.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...+++||+|++++|++++|+||||||||||||+|+++.... ..|. .... .-+.+..-..++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCChHH
Confidence 457899999999999999999999999999999998653210 0110 0000 0011111111222222222
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
++ .. ....+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124789999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 244 AASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 244 ~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
.....+. .+++.++++.|.++|++||++. +..+||+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 9998887 7777786556999999999953 4456654
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.82 E-value=2.3e-20 Score=157.73 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 206 WNVRGVSGGQKRRVSIC------IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IA------raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
+++.+||||||||++|| |||+.+|++|||||||+|||+..+..+.+.|.++.++ |.|||++|||+ .+..+|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhC
Confidence 35679999999999876 8999999999999999999999999999999998644 89999999995 367899
Q ss_pred cEEEEE--eCCeE
Q 038004 280 HNLCLL--AYGKT 290 (330)
Q Consensus 280 d~v~vl--~~G~i 290 (330)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 99
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=6.4e-23 Score=192.60 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=87.6
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCCCCccEEEECCEeccc--ccCc
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR-LSSNTEQTGEILINGRKETL--AFGT 145 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl-~~~~~~~~G~I~~~g~~~~~--~~~~ 145 (330)
.||++.| +++.++++++|+| +|+|+||||||||+++|+|. ..+ .+| |.++|.+... ....
T Consensus 2 ~~l~~~~-------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~ 64 (301)
T 2qnr_A 2 SNLPNQV-------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEA 64 (301)
T ss_dssp -----------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------
T ss_pred CCCcceE-------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEee
Confidence 4677776 3467999999998 99999999999999999997 554 368 8888765421 2345
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
+++++|.+.+...+|+.|++.++..... .+..+..+..+.+ ..+. +++++|||||||+.+|||+
T Consensus 65 ~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~-----~~~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 65 STVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYIDE------QFER-----YLHDESGLNRRHIIDNRVH 128 (301)
T ss_dssp CEEEEC---CCEEEEEEEEC----------------CTTHHHHHHH------HHHH-----HHHHHTSSCCTTCCCCCCC
T ss_pred EEEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHH-----HHHHhCHHhhhhhhhhhhh
Confidence 7899998888888899998876532210 0000111111111 1222 2458999999999999998
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 226 LTRPKLLFLDEPTSG-LDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 226 ~~~P~llllDEPtsg-LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
+ +|++||||++ ||+... ++++++.++.+.++|+++||+.
T Consensus 129 ~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 129 C----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp E----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred h----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 6 9999999985 999763 5666665445889999999964
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=1.6e-21 Score=179.67 Aligned_cols=132 Identities=19% Similarity=0.340 Sum_probs=95.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++ .|++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i-------~~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI-------EYVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC-------CSCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc-------eeecCCccee---------
Confidence 4799999 8999999999999999999999999998762 169999988653 2333332100
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
.. . ..+++.. ..| |++||++|..+|++||+|||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0123221 123 899999999999999999999 8887
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
...++ +. + +.|.+|++++|+.. +...|||+++|.
T Consensus 113 ~~~~l---~~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 113 VETAL---RA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HH-H-HTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHH---HH-H-ccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 65443 33 3 35899999999953 567788776554
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.80 E-value=1.3e-21 Score=184.12 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=105.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCCCCCCCCHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
+|++++|+||||||||||+++|+|++++. +|+|.+.|.+.... ...++|++|++.++|.+++++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999874 69999999875211 13489999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
.++..... . ..+++..|+.+.... .++..++||++|||||+.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~-d-----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY-D-----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC-S-----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC-C-----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 76532110 0 012233444332222 2455558999999999999994433 344444
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
...+++.++.+.+..|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 45566667777655689999999983
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.80 E-value=5.9e-21 Score=199.08 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=99.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
+..+++|+||+ |++++|+||||||||||+|+|+|+.... ..|.+. ......+++++| +++.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~--~~G~~v------pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA--QVGSFV------PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH--TTTCCB------SSSEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc--ccCcee------ehhccceeeHHH---hhccCCHHH
Confidence 35789999998 9999999999999999999999986311 246542 111234666655 455556555
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI--LTRPKLLFLDEP---T 238 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL--~~~P~llllDEP---t 238 (330)
++. ..+|+||+|++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 441 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 239 SGLDSAAS-YHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 239 sgLD~~~~-~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
++||.... ..+++.|.+ .|.++|++||+. .+..++
T Consensus 669 s~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred CCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 99998875 467777755 389999999994 344454
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.80 E-value=5.8e-21 Score=200.10 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=103.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...+++|++|+ ++|++++|+||||||||||||+|+|+.... ..|. ........+++++| +++.+++.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G~------~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIGS------YVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTTC------CBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcCc------ccchhcccceeHHH---HHhhCCHHH
Confidence 35689999999 999999999999999999999999975321 1131 11111123444444 455556655
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
++..+ ...+|+++++ ++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 54211 0246777764 4455557999999999999999998
Q ss_pred HHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 244 AASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 244 ~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
.....+ +.+++.++++.|.++|++||+. . +..+||++..+.+|++.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~-e-l~~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF-E-LTQLPEKMEGVANVHLD 748 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG-G-GGGHHHHSTTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH-H-HHHHhhhhhceEEEEEE
Confidence 877775 7888888754589999999995 3 45688876555555543
No 104
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=2.3e-19 Score=188.35 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 181 EKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 181 ~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
+..++++ .|..+||... +++ .+.+|||||+|||+||++|+.+| .+|||||||++||+.....++++|++++
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445555 5889999754 444 35699999999999999999999 5999999999999999999999999997
Q ss_pred hcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 258 HEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 258 ~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+.|.|||+|+||+ . +...||+|++| ++|++++.|+++++
T Consensus 429 -~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 -RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp -TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred -HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 5699999999996 4 45689999999 79999999997653
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.79 E-value=1.2e-20 Score=167.55 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=110.8
Q ss_pred cceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTG-YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--------------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--------------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--------------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--------------------CHHH
Confidence 457888886 8999999999999999999999999987654 235555533211 1111
Q ss_pred HHHHHHhhcCCCCCCHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKR--ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTS 239 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~--~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPts 239 (330)
.......+... ....... ..++.....++ ... .....|.++.++...+.+...+|+ +||+||||+
T Consensus 66 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFNWD--FEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTTCC--CGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhcch--HHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 11000000000 0000000 00000000000 000 112459999999988888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHhcCCceEEEEEcCch-------HHHHHhccEEEEEeCC
Q 038004 240 GL--DSAASYHVMKRIVNLAHEDGITVVASIHQPS-------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 240 gL--D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------~~i~~~~d~v~vl~~G 288 (330)
++ |+..+..+++.|++++++.|.|||+++|+.. ..+.++||++++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988999999999998778999999999951 2478899999999864
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.78 E-value=6.4e-21 Score=182.55 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=104.7
Q ss_pred ceEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCC-CCccE-EEECCEecccccCcEEEEeCCCCCCCCCC
Q 038004 86 AILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNT-EQTGE-ILINGRKETLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 86 ~iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~-~~~G~-I~~~g~~~~~~~~~i~~v~Q~~~l~~~lT 160 (330)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. ...|. |+++++... ...++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 456666 6899999999999999999999999999987 3320 00257 788775421 11234555555444332 3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEE
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-------TRPKLLF 233 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-------~~P~lll 233 (330)
+.+|+.+.. . .-|.+|+|++.++++++ .+|++||
T Consensus 196 v~~ni~~~~--------------------------------~-------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR--------------------------------A-------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE--------------------------------C-------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe--------------------------------c-------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 333321110 0 01456677777777776 7899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 234 LDEPTSGLDSAA------------SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 234 lDEPtsgLD~~~------------~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+||||+++|+.. ..+++..|++++++.|+|||+++|.. .....+++...+...|++++++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 999999999852 46677788888877899999999985 34444455556666676655443
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.78 E-value=4.5e-22 Score=203.43 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=115.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEee----------EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQEL----------TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI 134 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~v----------sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~ 134 (330)
.++++||+..|... .+++|+.+ +++++. +||+||||||||||+++|+|+..|. .+|.|++
T Consensus 10 ~i~~~~l~~~~~~~-----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEEK-----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTR 79 (608)
T ss_dssp ----------CHHH-----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCC
T ss_pred hhhhhhhhHHHHHH-----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEE
Confidence 57899999998421 12233333 355554 9999999999999999999998662 3799999
Q ss_pred CCEecc--------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 038004 135 NGRKET--------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206 (330)
Q Consensus 135 ~g~~~~--------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~ 206 (330)
+|.++. .....++|++|++.+++.+||.+++.++........ .++
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~----------- 132 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGI----------- 132 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCC-----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------ccc-----------
Confidence 998741 123468999999999999999999977543211000 011
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh-cCCceEEEEEcCch-------
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEP------TSGLDSAASYHVMKRIVNLAH-EDGITVVASIHQPS------- 272 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEP------tsgLD~~~~~~i~~~L~~l~~-~~g~tvi~itHd~~------- 272 (330)
| ++++.++.+....|+++|+||| |+|||+..+..+.++++++.+ ..+.++++++|+..
T Consensus 133 -----s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 133 -----S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp -----C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred -----c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1 0112222333458999999999 999999999999999999643 45788999999953
Q ss_pred HHHHHh----ccEEEEEeCCeEEEEcChhh
Q 038004 273 SDVFEL----FHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 273 ~~i~~~----~d~v~vl~~G~iv~~g~~~~ 298 (330)
..+..+ ...|+|+.++.++..|..+.
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 112222 25688999888887776543
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.78 E-value=7e-19 Score=162.56 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=105.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
-+++|++++|+||||||||||++.|++... .|.++ .|.... ....+.|+..+.. ..+.......+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~------~~~~~~r~~~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDP------PTAIHHRLHALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSC------HHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCC------HHHHHHHHHHHHh
Confidence 478999999999999999999999998653 36653 344321 1245777765442 2121111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HHH
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS--GLDSAA---SYH 248 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts--gLD~~~---~~~ 248 (330)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|++||+||||+ ++|... ...
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235667888887765444 3568999998865 68889999999999999 999743 378
Q ss_pred HHHHHHHHHhcCCceEEEEEcCc
Q 038004 249 VMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+++.|++++++.|+|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 88999999767799999999995
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.74 E-value=4e-21 Score=168.79 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
|++++|+||||||||||+++|+|+++ . +| |.++|.... ...++++|++|+. .... +++ ..+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999986 4 58 988886542 2246789999975 1111 111 01100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRV-SICI---EILTRPKLLFLDE--PTSGLDSAASY 247 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv-~IAr---aL~~~P~llllDE--PtsgLD~~~~~ 247 (330)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|++||+|| |+..+|.....
T Consensus 67 -------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp -------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred -------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 00100 011222 23347999999998 4455 6899999999999 89999987554
Q ss_pred HHHHHHHHHHhcCCceEEE----EEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 248 HVMKRIVNLAHEDGITVVA----SIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~----itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
.+. ++.+. ..++|+ ++|+.. ..++|+|..+.+|+++....
T Consensus 127 ~l~----~~l~~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~~ 170 (189)
T 2i3b_A 127 AVR----QTLST-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVTK 170 (189)
T ss_dssp HHH----HHHHC-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECCS
T ss_pred HHH----HHHhC-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeCh
Confidence 444 44333 334443 349842 34667777778888877543
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=5.5e-20 Score=179.87 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=96.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.| +.+.++++++|+| +|+|+||||||||+++|+|+..+.. ..|.+.+++.. +...
T Consensus 10 ~~l~~~~l~~~y-------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~-t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQV-------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK-TVQV 74 (418)
T ss_dssp -----CCCCCCT-------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC------CCEE
T ss_pred CcEEEEecceeE-------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc-ceee
Confidence 368999999887 2457999999998 9999999999999999999986421 12223222211 1112
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++|++|++.+++.+||.|++.++.... .......+.+.++ . .++.+++||++|||
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~---------~--------~~~~~l~qr~~IaR 131 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID---------S--------KFEDYLNAESRVNR 131 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTTSCC-CC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH---------H--------HHHHHHHHHHHHHH
Confidence 35788999888888899999987654321 0111111222121 1 45677888999999
Q ss_pred HHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 224 EILTRPK---LLFLDEPT-SGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 224 aL~~~P~---llllDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+++.+|+ +|++|||| .+||+... ++++.+. . +.+||+|.|..
T Consensus 132 al~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~ 177 (418)
T 2qag_C 132 RQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEEST
T ss_pred HhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcc
Confidence 9999999 99999999 69998763 4445554 3 67787777763
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=6.1e-20 Score=161.09 Aligned_cols=180 Identities=13% Similarity=0.054 Sum_probs=100.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~~ 142 (330)
+|+++||++.|. ..++++ |.+.+|+.++|+|+||||||||++.|+|... ...++.|.+.+.+.-...
T Consensus 3 ~l~~~~~~~~~~--------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~- 71 (210)
T 1pui_A 3 NLNYQQTHFVMS--------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA- 71 (210)
T ss_dssp --------CEEE--------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-
T ss_pred chhhhhhhheee--------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-
Confidence 478999999983 246777 8899999999999999999999999999871 111245765542211000
Q ss_pred cCcEEEEeCCCCCC----CCCC---HHHHHHHHHhh-cC--------CCCCCHHHHHHHHHHHHHHcCCCccc-ccccCC
Q 038004 143 FGTSAYVTQEDTLM----TTLT---VMEAVYYSAQL-QL--------PDSMSRSEKRERAEMTIREMGLQDAM-DTRIGG 205 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~----~~lT---v~e~l~~~~~~-~~--------~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~ 205 (330)
..+.+ .+.+.+. +.-. ....+.+.... .. ............+.++++..+++... .++
T Consensus 72 -~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK--- 146 (210)
T 1pui_A 72 -DGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK--- 146 (210)
T ss_dssp -TTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC---
T ss_pred -CCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec---
Confidence 01111 1212111 0000 11112111100 00 00000112233455667777876542 333
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCce
Q 038004 206 WNVRGVSGGQKRR-VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263 (330)
Q Consensus 206 ~~~~~LSGGqrQR-v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 263 (330)
+..+|+||+|| +.++++++.+|.++++|||||++|......+++.|.++..+ |.+
T Consensus 147 --~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 147 --ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp --GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred --ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 34799999999 89999999999999999999999999999999999988643 433
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.72 E-value=8.1e-19 Score=168.34 Aligned_cols=126 Identities=19% Similarity=0.258 Sum_probs=84.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
.+.+|++++|+||||||||||+++|+|++++. ..|.|...+.+.... ....+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 67889999999999999999999999998763 136665433322111 111223333221100
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
.++..+ +||+||..+|++|++|||| |..+. +.
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 122221 9999999999999999999 65543 34
Q ss_pred HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+++ +.|.+||+++|+.. .+ ..|||++.|..
T Consensus 214 ~~~~~-~~G~~vl~t~H~~~-~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAA-ETGHLVFGTLHTTS-AA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHH-HTTCEEEEEESCSS-HH-HHHHHHHHTSC
T ss_pred HHHHH-hcCCEEEEEEccCh-HH-HHHHHHhhhcC
Confidence 44444 45999999999964 44 77888887744
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.70 E-value=2.3e-17 Score=145.58 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=102.8
Q ss_pred cceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTG-YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...|+.+.. -+++|++++|+||||||||||++.|++ .. .+.+ .|+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~v--------------~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKKV--------------AYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSEE--------------EEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCcE--------------EEEECCCCC----CHHH
Confidence 345666664 789999999999999999999999999 21 1222 233322211 2211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ--KRRVSICIEILTR-PKLLFLDEPTSG 240 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq--rQRv~IAraL~~~-P~llllDEPtsg 240 (330)
........ .... +++++.+. +..+++++ +|+++.+++++.+ |+++|+||||+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111111 1111 11222221 12455554 5788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHhcCCceEEEEEcCch------------HHHHHhccEEEEEeCC
Q 038004 241 LDSA--------ASYHVMKRIVNLAHEDGITVVASIHQPS------------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 241 LD~~--------~~~~i~~~L~~l~~~~g~tvi~itHd~~------------~~i~~~~d~v~vl~~G 288 (330)
+|+. ....+++.|++++++.|.+||+++|... ..+...||++++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 2355677788888777999999999743 1577899999999864
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.69 E-value=7.9e-17 Score=139.45 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.+..||||||||++||++|+. .|+++||||||+|||+.....+.++|+++.+ +.++|++||+. .....||++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEE
Confidence 356899999999999999974 4699999999999999999999999999863 46899999994 467899999
Q ss_pred EEE--eCCeE
Q 038004 283 CLL--AYGKT 290 (330)
Q Consensus 283 ~vl--~~G~i 290 (330)
+.+ .+|..
T Consensus 137 ~~v~~~~g~s 146 (173)
T 3kta_B 137 IGVSMRDGVS 146 (173)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 865 46653
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.67 E-value=1.1e-18 Score=156.63 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=94.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCH----HHHHHHH
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTV----MEAVYYS 168 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv----~e~l~~~ 168 (330)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++... ....++|+||++.+|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999998752 257899888865322 12357899997655444333 1211110
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
. ..+ ..| +++ +..++..++++||| ||+..+.+
T Consensus 91 ~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 000 111 121 34455568999999 99999999
Q ss_pred HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
+++.+. .+.+|++++|++. .+.. |+ +..| .++++++..
T Consensus 123 i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHH
Confidence 988765 3899999999964 4444 32 6667 566665543
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.64 E-value=3.9e-21 Score=167.11 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 177 (330)
|++++|+||||||||||+++|++. .+|.++++|.+.... ...++++|.....+.+++++++.+..........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999982 258899988654221 2345666655444455777777654322100000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICI------EILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 178 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L--SGGqrQRv~IAr------aL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
..+++.+. .....+. ..++ |+||+|++.++. +|+.+|+...+|+ +||+.....
T Consensus 75 ---------~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~- 135 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL- 135 (189)
T ss_dssp ---------EEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred ---------cEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence 00111110 0000011 1134 889988988888 8999999888884 899988888
Q ss_pred HHHHHHHHhcCCceEEEEEcC-chHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 250 MKRIVNLAHEDGITVVASIHQ-PSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 250 ~~~L~~l~~~~g~tvi~itHd-~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++.+..+. +.+.++|.+||. +. .+.++||+|+ ++|++++.|+++
T Consensus 136 ~~~~~~~~-~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 VEEFESKG-IDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp HHHHHHTT-CCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC----
T ss_pred HHHHhhcC-CCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCC
Confidence 88888875 457899999998 74 6889999998 999999999853
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.6e-18 Score=166.89 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=116.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.|++++ ++.| ++.+ |++|||++++|++ +||+||||||||||+|+|+|+.- .|.-.... .....
T Consensus 16 ~l~~~~-~~~y-------~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~-~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGF-------DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT-QPGVQ 80 (427)
T ss_dssp -CCCCC-CC-C-------C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C-CSSCE
T ss_pred eEEEee-EEEE-------CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC-Cccce
Confidence 466666 6666 3345 9999999999999 99999999999999999999852 13211100 01111
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHHc-CCCc----ccccc----cC--CCCCC
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS--RSEKRERAEMTIREM-GLQD----AMDTR----IG--GWNVR 209 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~--~~~~~~~v~~~l~~~-~L~~----~~~~~----~~--~~~~~ 209 (330)
...++|++|++.+++.+||.|++.|+........+. .......+.++|... ++.. ..+.+ +. ....+
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 235899999998888899999986543210000000 011234455566654 4431 11221 00 00013
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCceEEEEEcC
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN-LAHEDGITVVASIHQ 270 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~-l~~~~g~tvi~itHd 270 (330)
.|+-.+ +.|+++|..++++|++|||+..|.+.....+.+.+++ +. ..|..|++++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 566665 7999999999999999999999999999999999987 64 679999999875
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.61 E-value=9.7e-19 Score=151.66 Aligned_cols=141 Identities=15% Similarity=0.047 Sum_probs=88.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
.+++|++++|+||||||||||+++|+|+. ..|.|.++|.+... ....++|++|+.. +.+++.+++.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 36799999999999999999999999983 25999999865321 1123456666543 35678888866432
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 038004 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~ 250 (330)
........ ..++.++..+++...... +..+..+|+|++||++++|++..+|+++ +|+.....++
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 11000000 000001111112111100 1123479999999999999999999876 6888777777
Q ss_pred HHHHHHH
Q 038004 251 KRIVNLA 257 (330)
Q Consensus 251 ~~L~~l~ 257 (330)
+.+..+.
T Consensus 142 ~~~~~l~ 148 (191)
T 1zp6_A 142 SQFADLG 148 (191)
T ss_dssp HHTTCCG
T ss_pred HHHhccC
Confidence 7776654
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.60 E-value=1.1e-18 Score=158.13 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH---cCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALA---GRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~---Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+... ....+++++|++.+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 99876 46888877643211 1122455678888888889999997643210
Q ss_pred -----CCCCCCHHHHHHHHHHHHH--HcCCCccc-------ccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEe--
Q 038004 173 -----LPDSMSRSEKRERAEMTIR--EMGLQDAM-------DTRIGGWNVRGVSGGQKRRVSICIEI-LTRPKLLFLD-- 235 (330)
Q Consensus 173 -----~~~~~~~~~~~~~v~~~l~--~~~L~~~~-------~~~~~~~~~~~LSGGqrQRv~IAraL-~~~P~llllD-- 235 (330)
...+..... ..++.+.. .+++--.+ -.++..+.+..||| |+ +|| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 000111111 12222221 12210000 11222234568999 66 788 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 236 --EPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 236 --EPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
|||++||...+..+.+.|+++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988643
No 120
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.60 E-value=4.9e-17 Score=161.11 Aligned_cols=153 Identities=11% Similarity=0.170 Sum_probs=105.5
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----------ccCcEEEEeCCCCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----------AFGTSAYVTQEDTLM 156 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----------~~~~i~~v~Q~~~l~ 156 (330)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .+..++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998763 6999998755321 123589999998888
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCC-CEEEE
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-TRP-KLLFL 234 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-~~P-~llll 234 (330)
+.+++++++.++.... .. . -+++-.|+.+.... |-.-.+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8899999998864311 00 0 01222333211111 1122357888898774 457 35555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
..+++|.|.. +.++.+.+..+.|.+++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 33455555568999999993
No 121
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.60 E-value=1.9e-16 Score=150.18 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=110.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCCCCCCCCHHHH
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
++|++++|+||||||||||+++|+|++++. .|+|.+.|.+.... .-.+.|++|...++|.++|+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998874 69999999875311 1236699999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.++..... . . .+++..|+.+.... =+.+.-.|++++..++.+++||.++.
T Consensus 204 l~~~~~~~~-d---------~--vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI-D---------V--VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC-S---------E--EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc-h---------h--hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987643110 0 0 01222233221111 12233348999998888888885554
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEcCch--------HHHHHhccEEEEEeCCeEE
Q 038004 245 ASYHVMKRIVNLAHEDGITVVASIHQPS--------SDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~tvi~itHd~~--------~~i~~~~d~v~vl~~G~iv 291 (330)
..+++.++.+.+..+.|+|++||... ..+....-.|.++..|+-+
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 35556667776667999999999521 2333445567777777643
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.60 E-value=8.2e-17 Score=155.28 Aligned_cols=127 Identities=18% Similarity=0.308 Sum_probs=90.8
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+... ....++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999998752 15999776654322 123466777630
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+|+. +..| +.+|+++|..+|++|++|||+ |+..
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1244 469999999999999999999 7655
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
.. ..++. + ..|.+|+.++|+. . +...|||++
T Consensus 224 ~~---~~l~~-~-~~g~~vi~t~H~~-~-~~~~~~rl~ 254 (372)
T 2ewv_A 224 VE---TALRA-A-ETGHLVFGTLHTN-T-AIDTIHRIV 254 (372)
T ss_dssp HH---HHHHH-H-TTTCEEEECCCCC-S-HHHHHHHHH
T ss_pred HH---HHHHH-H-hcCCEEEEEECcc-h-HHHHHHHHH
Confidence 33 33443 3 3588999999994 3 566677654
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.59 E-value=4.7e-16 Score=148.91 Aligned_cols=137 Identities=19% Similarity=0.147 Sum_probs=95.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCCCCccEEEEC-CEec-ccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS-SNTEQTGEILIN-GRKE-TLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-~~~~~~G~I~~~-g~~~-~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
++++++. .+|++++|+||||||||||+|+|+|+.. + .+|+|.++ |... ......+++++|+..+++.+++.++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 5666664 4899999999999999999999999987 6 46999987 6543 2234568999999988888888883
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
. + ..+...+..+.+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 1 1 1245566677788899999998766653 56899 999999999875 3444
Q ss_pred HHHHHHHHHHHHH
Q 038004 245 ASYHVMKRIVNLA 257 (330)
Q Consensus 245 ~~~~i~~~L~~l~ 257 (330)
-.....+++.++.
T Consensus 333 R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 333 RFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4445555666553
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.59 E-value=9.2e-18 Score=161.15 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=104.2
Q ss_pred eEEeeEEEEeC--CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc----cEEEECCEecccccCcEEEEeCCCCCCCCCC
Q 038004 87 ILQELTGYVEP--GQILAIMGPSGCGKSTLLDALAGRLSSNTEQT----GEILINGRKETLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~--Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~----G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lT 160 (330)
+.+.|+++|.+ |+.++|+||||||||||+++|+|++.+ .+ |+|.+++... ..+..+....
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 45679999999 999999999999999999999999986 35 6665532100 0000111112
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-TRPKLLFLDE--- 236 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-~~P~llllDE--- 236 (330)
. +++.+..... ......+.+-+..++ .+..++. +..+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~~-------~~~~~t~~~nl~~~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 223 Y-PQMALGHQRY-------IDYAVRHSHKIAFID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp H-HHHHHHHHHH-------HHHHHHHCSSEEEES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred H-HHHHHHHHHH-------HHHHHhccCCEEEEe-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 2 3343321100 000000000000001 1111111 2256778888888888875 6999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 237 PT------SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 237 Pt------sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|+ .++|+..+..+.+.|+++.++.|.+||+++|. . ...++++++.+++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998876668999999986 3 5677787766654
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=1.2e-14 Score=129.88 Aligned_cols=153 Identities=19% Similarity=0.260 Sum_probs=88.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCC--CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNT--EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~G--l~~~~~--~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||++.|++ +.++.. ...|.+++++.. .+ ...+.....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 3588999999999999999999999999 443310 013445554421 11 111111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR-VSICIEIL--TRPKLLFLDEPTSGLDSA- 244 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR-v~IAraL~--~~P~llllDEPtsgLD~~- 244 (330)
..+. .... ++++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 80 ERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp HHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred HHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 1111 1111 12222110 12355555433 23333343 589999999999999975
Q ss_pred ------H-----HHHHHHHHHHHHhcCCceEEEEEcCchHHHH-------------------HhccEEEEEeCC
Q 038004 245 ------A-----SYHVMKRIVNLAHEDGITVVASIHQPSSDVF-------------------ELFHNLCLLAYG 288 (330)
Q Consensus 245 ------~-----~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~-------------------~~~d~v~vl~~G 288 (330)
. ...++..|.+++++.|.|||+++|... ... .+||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 356777788887777999999999642 222 279999999865
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.58 E-value=1.4e-16 Score=152.99 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=99.1
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc--ccCcEEEEe-CCCCCCCCCCHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL--AFGTSAYVT-QEDTLMTTLTVME 163 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~--~~~~i~~v~-Q~~~l~~~lTv~e 163 (330)
++++||.+++|++++|+||||||||||+++|+|++++. +|.|.++|... .. ....++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 49999999999999999999999999999999999873 69999998531 11 234578888 54431
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
.++++..+|..|+.++..+|+.+++||+..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356677777888999999999986
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
..+.+.|+.+. ....|++.++|.. .....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 24556677765 3345789999994 3778899999988764
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.58 E-value=1.7e-19 Score=170.41 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=101.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC--------CCCCCCccEEEECCEeccccc--------------------CcEEEE-
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL--------SSNTEQTGEILINGRKETLAF--------------------GTSAYV- 149 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~--------~~~~~~~G~I~~~g~~~~~~~--------------------~~i~~v- 149 (330)
++++|+|+||||||||+|.|+|+. .+ ..|+|.++|.++.... ..++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 33 4699999998653210 124445
Q ss_pred --eCCCCCCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 150 --TQEDTLMTTLTVMEAVYYSAQLQLPDSM---SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 150 --~Q~~~l~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
+|++.+++.+++.|++.++........+ .......++..++..+++.+..++. .+||+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 4665555566666665332100000000 0000001112233345555544443 2699999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+|+++ ||| ..+.+.|+++. .+.+|+++||++. .+..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 99999987 998 67778888874 4899999999743 3444443
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.58 E-value=1.6e-17 Score=141.64 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
+.+.++++|||++++|++++|+||||||||||+|+|+|++ |. +|+|.++|.++........|++|++.++ ++|+.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcH
Confidence 3457899999999999999999999999999999999998 63 6999999976521111012799998888 89999
Q ss_pred HHHHH
Q 038004 163 EAVYY 167 (330)
Q Consensus 163 e~l~~ 167 (330)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99854
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.56 E-value=1.2e-14 Score=139.90 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 207 NVRGVSGGQKRRV------SICIEILTR-PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 207 ~~~~LSGGqrQRv------~IAraL~~~-P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
.+..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. + +.+||++||++ . +..+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~-~-~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHR-E-LEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCG-G-GGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChH-H-HHhhC
Confidence 3568999999988 567899999 99999999999999999999999999874 3 46899999996 3 67899
Q ss_pred cEEEEEe
Q 038004 280 HNLCLLA 286 (330)
Q Consensus 280 d~v~vl~ 286 (330)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=7.4e-19 Score=167.43 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=115.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++++++.| +.+.+|+++||++.+|++++|+|+||||||||+++|+|++.+. +|+|.+.|.+...
T Consensus 29 ~ie~~~~~~~~-------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~ 98 (337)
T 2qm8_A 29 LAESRRADHRA-------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRT 98 (337)
T ss_dssp HHTCSSHHHHH-------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSS
T ss_pred HHeeCCccccc-------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCccccc
Confidence 46788888776 2356899999999999999999999999999999999998763 6999999876421
Q ss_pred ------ccCcEEEEeCCCCCCCCCC------------HHHHHHHHH-------------------------h--hcCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLT------------VMEAVYYSA-------------------------Q--LQLPDS 176 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lT------------v~e~l~~~~-------------------------~--~~~~~~ 176 (330)
...+++|++|++.+++..+ +.|.+.... . +.....
T Consensus 99 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 99 GGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP 178 (337)
T ss_dssp CCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS
T ss_pred ccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC
Confidence 1235889999988765322 222221000 0 000000
Q ss_pred CCHHHHH---HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH
Q 038004 177 MSRSEKR---ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT------RPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 177 ~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~------~P~llllDEPtsgLD~~~~~ 247 (330)
....+.+ ..+.+....+.+ ...|.. ...++|+|++|++..|++++. .|++++ +|++|.....
T Consensus 179 ~~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~ 249 (337)
T 2qm8_A 179 GAGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLD 249 (337)
T ss_dssp CC------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHH
T ss_pred CCcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHH
Confidence 0001100 001111111222 112210 123689999999999999987 688876 9999999999
Q ss_pred HHHHHHHHHHh
Q 038004 248 HVMKRIVNLAH 258 (330)
Q Consensus 248 ~i~~~L~~l~~ 258 (330)
.+++.|.++..
T Consensus 250 ~L~~~I~~~~~ 260 (337)
T 2qm8_A 250 SLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=1.1e-16 Score=156.33 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=92.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeC----------CCCCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ----------EDTLMT 157 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q----------~~~l~~ 157 (330)
-++|+|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+.+.....+++|.+ .+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999842 1222221111122344443 333322
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEK--RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllD 235 (330)
.. .++ ..+..... .++++.++..+++. +. .+.+||+||+|++.+|++|+..|.+|++
T Consensus 218 ~a--~~~----------~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl- 276 (416)
T 1udx_A 218 GA--SEG----------KGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL- 276 (416)
T ss_dssp CG--GGS----------CCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE-
T ss_pred ch--hhh----------hhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE-
Confidence 10 000 01111100 01122233334443 12 2358999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
+.+|.... ..++.+.+..++.+.+++++|-
T Consensus 277 ---NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 277 ---NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp ---ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred ---ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 99998776 5555555554456778877764
No 132
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.52 E-value=2.5e-14 Score=140.02 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 208 VRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+..||||||||++||++|+ .+|++|||||||++||+..+..+++.|+++. ..+.++|++||+. .....||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh-cCCCEEEEEECCH--HHHHhCCEEE
Confidence 3469999999999999999 5899999999999999999999999999985 3478999999994 4567899999
Q ss_pred EEeC
Q 038004 284 LLAY 287 (330)
Q Consensus 284 vl~~ 287 (330)
+|..
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
No 133
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.52 E-value=6.1e-17 Score=139.88 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=84.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------cc-CcEE----EEeCCCCCCCCCCHHHHH
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AF-GTSA----YVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~-~~i~----~v~Q~~~l~~~lTv~e~l 165 (330)
++++|+|+||||||||+++|+|++.+.....|.|.++|.++.. .+ +.++ ++.|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 5899999999999999999999987642236999999976211 11 2345 7888776540 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIRE-MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL-------FLDEP 237 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~ll-------llDEP 237 (330)
. . .+....+.++++. + + .+++.+++ .|||||+||++||||++.+|++. +-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111134445554 3 2 35666653 59999999999999999999873 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhc
Q 038004 238 TSG---LDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 238 tsg---LD~~~~~~i~~~L~~l~~~ 259 (330)
..+ +|......+.+.+.+...+
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred cccCcccCcccHHHHHHHHHHHHhc
Confidence 322 3334456677777666544
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.50 E-value=4.7e-16 Score=145.12 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=87.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHh---hc
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ---LQ 172 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~---~~ 172 (330)
.++.++||+|++|||||||++.|.+++.+ .|. ..+.+.+|.||+.+++. ++.+++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g~----------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KYG----------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HHG----------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cCC----------CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46889999999999999999999998854 230 12345666999988875 88888877521 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQ--D--AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~--~--~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
...+.........+.+.++.+.-. . .....++ .+.+.+||||+||+++|++...+|+|||+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 000111111233455666665432 0 0111111 244689999999999983333399999999999999985
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=1.2e-15 Score=143.03 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=81.5
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEecccc-----cCcEEEEeCCCCCC-----CCCCH
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLA-----FGTSAYVTQEDTLM-----TTLTV 161 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~-----~~~i~~v~Q~~~l~-----~~lTv 161 (330)
+..|++++|+||||||||||+|+|+ +..+ .+|+|.+ +|+..+.. ...++||+|.|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4579999999999999999999999 8876 4699999 88765321 13589999998543 78899
Q ss_pred HHHH--HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 162 MEAV--YYSA----QLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 162 ~e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
|++ .|+. .++........+...++.++++.++|.+ .+++ +++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhc
Confidence 887 4441 0111111122233467899999999986 4444 35689999999999987
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.50 E-value=8.7e-14 Score=135.25 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=91.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCC--CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDA--LAGRLSSNT--EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~--l~Gl~~~~~--~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||++. +.++.++.. ...+.|+++++. .+ .........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~~rl~~~a 233 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RPVRLVSIA 233 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CHHHHHHHH
Confidence 4689999999999999999999994 456665421 012245554432 11 111111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG-GQKRRVSICIEIL--TRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG-GqrQRv~IAraL~--~~P~llllDEPtsgLD~~~ 245 (330)
..+. +... .+++.+.+ ....++ .+.+.+..++.++ .+|+++++|||++.+|...
T Consensus 234 ~~~g----l~~~-------~vleni~~------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 234 QRFG----LDPD-------DALNNVAY------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred HHcC----CChH-------hHhhcEEE------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 1111 1111 12221111 112222 2333443343433 5799999999999999643
Q ss_pred H------------HHHHHHHHHHHhcCCceEEEEEcCch------------------HHHHHhccEEEEEeCCe
Q 038004 246 S------------YHVMKRIVNLAHEDGITVVASIHQPS------------------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 246 ~------------~~i~~~L~~l~~~~g~tvi~itHd~~------------------~~i~~~~d~v~vl~~G~ 289 (330)
. ..+++.|++++++.|.|||+++|... ..+.+.+|.+++|+.++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 67889999998888999999999811 23577899999998763
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.49 E-value=7e-18 Score=165.02 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=92.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---------cCcEEEEe-----
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---------FGTSAYVT----- 150 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---------~~~i~~v~----- 150 (330)
..+|+++ + ..+|++++|+||||||||||+++|+|++.+. +|+|.+.|.++... ...+++.|
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3467777 4 3899999999999999999999999998763 69999988664211 12344544
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 151 ----QEDTL--MTT----LTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 151 ----Q~~~l--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
|+|.+ +.. .|+.+++.++..-+.. ..+....... +.+.|..+++.... . +..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH-
Confidence 88864 343 5888888775421100 0000011112 23356778887653 1 35899999999
Q ss_pred HHHHHHhcCCCEEEE
Q 038004 220 SICIEILTRPKLLFL 234 (330)
Q Consensus 220 ~IAraL~~~P~llll 234 (330)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 138
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.49 E-value=4.3e-15 Score=127.84 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=40.1
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 226 LTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 226 ~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
+.+|++||||||++ ++|+..+..+.+++.... +.|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCCh
Confidence 45999999999985 999999999999998876 45899999999864
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=1.3e-14 Score=122.32 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=69.7
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+|+++ +|+.++|+||||||||||+++|+|...+ +| ..+.|+...... ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~-~~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMP-LT------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSC-CC-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhh-HH-------
Confidence 456666 8999999999999999999999998754 25 012233322110 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+++.+|++||+|||++ ++...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 56555
Q ss_pred HHHHHHHHHHHHhcCCce-EEEEEcCc
Q 038004 246 SYHVMKRIVNLAHEDGIT-VVASIHQP 271 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~t-vi~itHd~ 271 (330)
+..+++++..+.+ .|++ +|++||..
T Consensus 100 ~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 100 QALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 8889999998874 4777 88888864
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=4.4e-14 Score=133.66 Aligned_cols=144 Identities=18% Similarity=0.186 Sum_probs=78.3
Q ss_pred EEEEEcCCCchHHHHHHHHHc-CCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAG-RLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G-l~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
.+.|.||||+|||||+++|+| +..+ ..|.|.++|.+... ....+++++|.+.+....+ + ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~--- 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG--- 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC---------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---
Confidence 389999999999999999999 6665 36999998865421 1245777887664311100 0 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
..... .+.+.++.+......+.. . .||| +..+|+++|+|||++ ||+..+..+++.|.+
T Consensus 103 ~~~~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 103 NNDRI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp -CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred CcchH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 00111 233333333211111111 1 4566 788999999999999 999999999999988
Q ss_pred HHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 256 LAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 256 l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.. .+.++|++||++......+.+|+
T Consensus 161 ~~--~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 161 YS--KNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ST--TTEEEEEEESCSCSSCHHHHTTS
T ss_pred hc--CCCEEEEEeCCHHHHHHHHHhhc
Confidence 64 37899999999653333344443
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.38 E-value=4.1e-16 Score=156.11 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-ccc-ccCcEEEEeCCCC--------
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETL-AFGTSAYVTQEDT-------- 154 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~~~-~~~~i~~v~Q~~~-------- 154 (330)
..+++++++.+++|++++|+||||||||||+++|+|+++++ +|.|.+.|.. ... ....++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999874 6999998864 221 1233555554322
Q ss_pred --------------CCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCC-----CcccccccC--CCCCCCCC
Q 038004 155 --------------LMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGL-----QDAMDTRIG--GWNVRGVS 212 (330)
Q Consensus 155 --------------l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L-----~~~~~~~~~--~~~~~~LS 212 (330)
++..++..|++.+....... ..++. .....+.++++++.. ....-..+. -.....+|
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 22345555544332222100 00000 000112233333322 211100000 00123579
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE--EEcCchHHHHHhcc
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA--SIHQPSSDVFELFH 280 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~--itHd~~~~i~~~~d 280 (330)
|||+||+++|. + | |+|||+.....+++.|.++. ..+.|+++ +||++ ..+...|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHH-HHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHH-HHHHHHcC
Confidence 99999987752 2 7 99999988777777777775 34788875 89995 57777775
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.38 E-value=7.2e-15 Score=137.59 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=70.2
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEecccc-----cCcEEEEeCCCC----------
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLA-----FGTSAYVTQEDT---------- 154 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~-----~~~i~~v~Q~~~---------- 154 (330)
|++..|++++|+||||||||||+|+|+|+..|. +|+|.+ +|+..+.. .+.++||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345689999999999999999999999999874 699999 88765321 135899999974
Q ss_pred ------CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038004 155 ------LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 155 ------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSG 213 (330)
++|.+|+ +|+.|+...+ ..+...++.++|+.++|. +.+++ ++++||+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5788899 8887652111 123345789999999996 44443 3457774
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.37 E-value=1.3e-15 Score=144.41 Aligned_cols=169 Identities=19% Similarity=0.222 Sum_probs=106.3
Q ss_pred CccceEEeeEEEEeCC-------cEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEecc-----cccCcEEEE
Q 038004 83 RKHAILQELTGYVEPG-------QILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKET-----LAFGTSAYV 149 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~G-------ei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~-----~~~~~i~~v 149 (330)
+...+++++++.+.+| +.++|+||||+|||||+++|+|.+... .+.+|.+..++.++. .....+.|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456889999999877 899999999999999999999987221 013566665554321 123468999
Q ss_pred eCCCCCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 150 TQEDTLMTTLTVMEAVYYSAQLQLPDS-MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 150 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
.|.+.+++ ++.|++........... .......+.+...+..++|.. ..+. +..||+|++||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce------
Confidence 99877765 78888854432211000 001122234555555566644 3333 458999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
.+||+.....+.++|++.++..+ ++|+. ..+..++++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 77888888899999998876555 35773 455555553
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.36 E-value=1.7e-15 Score=133.85 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=84.2
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
.++|++++|+||||||||||+++|+|++.+. | ..+++|.++...+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4789999999999999999999999998652 2 124555555543322 111221100000000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC-IEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA-raL~~~P~llllDEPtsgLD~~~~~~i~~~L 253 (330)
..... ..+.+.+..+...+.......+ ....+|+||+||+++| ++++.++.++++|||.. ..+
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l 144 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDL 144 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGG
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHH
Confidence 01111 1122233332111111111111 1236899999999998 88888888888888741 111
Q ss_pred HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 254 VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 254 ~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
..+ --.++++.++....+.+.+.|. +..|.
T Consensus 145 ~~~----~d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 145 TAI----WDVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp GGT----CSEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred HHh----cCEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 111 2357778777544456666662 34453
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.33 E-value=5.7e-14 Score=131.92 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEeccccc---C-cEEEEeCCCCCCC----CCCH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLAF---G-TSAYVTQEDTLMT----TLTV 161 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~~---~-~i~~v~Q~~~l~~----~lTv 161 (330)
+++.+|++++|+|+||||||||+|+|+|+..+ .+|+|.+ +|+..+... . .++|++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 56779999999999999999999999999876 3699998 776543211 1 1689999997654 6899
Q ss_pred HHHHH--HHHh--h----cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 162 MEAVY--YSAQ--L----QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 162 ~e~l~--~~~~--~----~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
|+|. |+.. + +........+....+.++++.++|.+.....+ ..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 1 11111111223456889999999987544443 2677788773
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.31 E-value=1.5e-16 Score=147.13 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=95.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----cCcEEEEeCCC-CCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----FGTSAYVTQED-TLMT 157 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----~~~i~~v~Q~~-~l~~ 157 (330)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++... .+.++++||.. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 999999999999999999998764 7899998654211 12466777764 3455
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
.+++.|++......+ .. .... .+....++. +.+|||||+||+.|++|+..+|++| ||+
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 556656553321100 00 0000 012222332 3489999999999999999999985 998
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 038004 238 TS------------GLDSAASYHVMKRI 253 (330)
Q Consensus 238 ts------------gLD~~~~~~i~~~L 253 (330)
+. --|...+..|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666777666554
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.29 E-value=2.5e-15 Score=141.11 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=95.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEE-------------------eCCcEEEEEcCCCchHHHHHHHHHcCCC--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYV-------------------EPGQILAIMGPSGCGKSTLLDALAGRLS-- 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i-------------------~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-- 123 (330)
.|+++||++.| .+++++|++.+ .+|+++||+|+||||||||+++|+|++.
T Consensus 37 ~i~~~~v~~~y---------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 37 DLSLEEVAEIY---------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TCCHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred ccchHhHHHHH---------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 47889999887 25789999988 8999999999999999999999999876
Q ss_pred CCCCCccEEEE---CCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 038004 124 SNTEQTGEILI---NGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199 (330)
Q Consensus 124 ~~~~~~G~I~~---~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~ 199 (330)
| .+|+|.+ +|..... ....++++ |+..+++.+++.+++.+...+.... . .+..+ ..
T Consensus 108 ~---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~--~-------------~i~~P-~~ 167 (308)
T 1sq5_A 108 P---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV--P-------------NVTAP-VY 167 (308)
T ss_dssp T---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC--S-------------CEEEC-CE
T ss_pred C---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC--C-------------ceecc-cc
Confidence 5 3699999 8765321 12346777 8777788899999998765543210 0 00000 01
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
..+.+ +|+..+.+.+..|+++|+|.|....+.
T Consensus 168 ----------~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 ----------SHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----------ETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----------ccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11211 333322344567899999999988773
No 148
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=2.9e-15 Score=145.21 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=114.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC----C-----CCCCccEEEECCEecc------cccCc---EEEEeCCCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS----S-----NTEQTGEILINGRKET------LAFGT---SAYVTQEDTL 155 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~----~-----~~~~~G~I~~~g~~~~------~~~~~---i~~v~Q~~~l 155 (330)
.+.+|..+||+|+||+|||||+|+|+|... . -.+..|.|.+.|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999321 0 0135799999884321 01111 2466777878
Q ss_pred CCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 038004 156 MTTLTVMEAV--YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP--KL 231 (330)
Q Consensus 156 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P--~l 231 (330)
++.++..|.+ .|...++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766554 23222211 111111122211 11 223466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEEcCchHHHHHhccEEE-EEeCC-eEEEEcChh
Q 038004 232 LFLDEPTSGLDSAASYHVMKRIVNL-AHEDGITVVASIHQPSSDVFELFHNLC-LLAYG-KTIYFGPAS 297 (330)
Q Consensus 232 lllDEPtsgLD~~~~~~i~~~L~~l-~~~~g~tvi~itHd~~~~i~~~~d~v~-vl~~G-~iv~~g~~~ 297 (330)
+++|||+.++|+......++.+..+ . ..|.|++ +|+. ..+..+||++. +|.+| ++++.|..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~-~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITS-RGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-CSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHH-hcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999887 5 4477754 9995 67899999999 99999 888777643
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.22 E-value=1.5e-11 Score=121.19 Aligned_cols=175 Identities=13% Similarity=0.169 Sum_probs=114.5
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+++..-+++|+++.|.|++|+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45788888889999999999999999999999999865321 13 113333221 122221
Q ss_pred HHH--HH-------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEE
Q 038004 165 VYY--SA-------QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLF 233 (330)
Q Consensus 165 l~~--~~-------~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~lll 233 (330)
..- +. .+.. ..+... ...++.++++.++..+..-.. +..+|.+|.+ +.++.++ .+|+++|
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~-~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPE-DWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHH-HHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHH-HHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 110 00 0110 112222 334566666666544332221 2479999987 5667676 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHhcCCceEEEEEc---------C--ch-------HHHHHhccEEEEEeC
Q 038004 234 LDEPTSGLD--------SAASYHVMKRIVNLAHEDGITVVASIH---------Q--PS-------SDVFELFHNLCLLAY 287 (330)
Q Consensus 234 lDEPtsgLD--------~~~~~~i~~~L~~l~~~~g~tvi~itH---------d--~~-------~~i~~~~d~v~vl~~ 287 (330)
+|+++...+ ......+.+.|+.++++.|++||+++| + |. ..+.+.||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999998763 334577888899998888999999999 2 21 146788999999987
Q ss_pred CeE
Q 038004 288 GKT 290 (330)
Q Consensus 288 G~i 290 (330)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.21 E-value=1.1e-10 Score=104.06 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHH-------HHHhccEEEEEeC
Q 038004 219 VSICIEIL--TRPKLLFLDEPTSGL--DSAASYHVMKRIVNLAHEDGITVVASIHQPSSD-------VFELFHNLCLLAY 287 (330)
Q Consensus 219 v~IAraL~--~~P~llllDEPtsgL--D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~-------i~~~~d~v~vl~~ 287 (330)
...++.++ .+|+++++|+|++.+ |+....+++..|.+++++.|.|||+++|..... +.+.||.+++|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 589999999999987 665556677777777777899999999985321 4678999999974
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.19 E-value=5.4e-13 Score=133.13 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCC--CHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTL--TVMEAV 165 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G--l~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~l--Tv~e~l 165 (330)
.+++.+.++..+.|.|.+||||||++++|.. +..+ ..|++.+.+.+.... -++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~------el~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML------ELSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS------GGGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh------hhhhhccCCcccceeecCH
Confidence 4778888999999999999999999999875 3333 236676655443210 01111111211 121222
Q ss_pred HHHHh-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-E
Q 038004 166 YYSAQ-LQLPDSMSRSEKRERAEMTIREMGLQDAMDT--RIGGWNVRGVSGGQKRRV----------SICIEILTRPK-L 231 (330)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~~~~~~LSGGqrQRv----------~IAraL~~~P~-l 231 (330)
..+.. +. ....+.++|. ++++.+|+.+.... ++ ...+|+||+|+. .+|+++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 11111 11 1134555664 67888998764321 11 135789988753 35667788898 8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEEcCchH------HHHHhccEEEE
Q 038004 232 LFLDEPTSGLDSAASYHVMKRIVNL---AHEDGITVVASIHQPSS------DVFELFHNLCL 284 (330)
Q Consensus 232 lllDEPtsgLD~~~~~~i~~~L~~l---~~~~g~tvi~itHd~~~------~i~~~~d~v~v 284 (330)
+++||++.-++.. ...+.+.|.++ .+..|.++|++||++.. ...++..||++
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8999999988743 33444444444 44558899999999751 23455567766
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.17 E-value=8.6e-12 Score=117.09 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=78.6
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSA 169 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~ 169 (330)
.+++..++|++++|+|+|||||||+++.|++++.+. .|+|.+.+.+... . ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r----~-------------~a~e------ 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR----A-------------AAIE------ 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC----H-------------HHHH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc----H-------------HHHH------
Confidence 355667889999999999999999999999998652 4677765543210 0 0111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV---SICIEILTRPKLLFLDEPTSGLDSAAS 246 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv---~IAraL~~~P~llllDEPtsgLD~~~~ 246 (330)
.+..+++.++++. + ..+|||+.|++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233445556532 1 26789999999 99999999999999999975 2334
Q ss_pred HHHHHHHHHHH
Q 038004 247 YHVMKRIVNLA 257 (330)
Q Consensus 247 ~~i~~~L~~l~ 257 (330)
..+++.|.++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.15 E-value=1.2e-11 Score=122.70 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
..+|++|||+|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTT
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEE
Confidence 3579999999999 999999999999999999999999874 6999999964
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.12 E-value=1.5e-10 Score=107.90 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=93.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
+.++++++.|. ... ++++|+ +|++++|+|+||+||||++..|+|++.+. .|+|.+.+.+...
T Consensus 77 ~~~~~l~~~~~-------~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~---- 138 (295)
T 1ls1_A 77 TVYEALKEALG-------GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR---- 138 (295)
T ss_dssp HHHHHHHHHTT-------SSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC----
T ss_pred HHHHHHHHHHC-------CCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc----
Confidence 45566666652 111 678888 99999999999999999999999998652 4777776543210
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
+ ...+.+ ..+.+..++.-.... ....-.+.+|.+|+.+.
T Consensus 139 -------~------~~~~ql---------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 139 -------P------AAREQL---------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKAR 177 (295)
T ss_dssp -------H------HHHHHH---------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHH
T ss_pred -------H------hHHHHH---------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHH
Confidence 0 000111 012233455432110 02234456789999998
Q ss_pred hcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Q 038004 226 LTRPKLLFLDEP-TSGLDSAASYHVMKRIVNLAHEDGITVVASI 268 (330)
Q Consensus 226 ~~~P~llllDEP-tsgLD~~~~~~i~~~L~~l~~~~g~tvi~it 268 (330)
..+++++|+||| +.++|......+.++...+. -..+++++.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~ 219 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD 219 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence 899999999999 99999988888877776653 234555443
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.12 E-value=8.4e-11 Score=109.80 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=97.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
.+|++++|+|+|||||||+++.|++.+.+. +| +++.++.+|+. +.++.+.+.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987642 35 24667777663 3456665543221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
.+|++... ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++. +
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~ 206 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELK-E 206 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHH-H
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHH-H
Confidence 12332110 1122 334555654 5999999999 8999987655444433 3
Q ss_pred HHh---cCCceEEE-EEcCchHHHHHhccEEEEEeCCeEEEEcCh-----hhHHHHHHhCCCCC
Q 038004 256 LAH---EDGITVVA-SIHQPSSDVFELFHNLCLLAYGKTIYFGPA-----SMTEQLFASNGFPC 310 (330)
Q Consensus 256 l~~---~~g~tvi~-itHd~~~~i~~~~d~v~vl~~G~iv~~g~~-----~~~~~~~~~~g~~~ 310 (330)
+.. ..+..+++ ++|.. ..+.++++++..+..+.++...-- ..+..+....|.|.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~pi 269 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGV 269 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCCC
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcCE
Confidence 321 12334444 48884 578888888777777777764321 12445555666654
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.10 E-value=8.6e-11 Score=112.19 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=87.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
-+++|+++.|.||+|||||||+..++...... .| .+.|+.-+..+.+ . +...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--------------~vlyi~~E~~~~~------~--~a~~--- 108 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG--------------IAAFIDAEHALDP------E--YAKK--- 108 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CEEEEESSCCCCH------H--HHHH---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--------------eEEEEECCCCcCH------H--HHHH---
Confidence 57899999999999999999988887643211 12 2344443322111 0 0111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCC----------
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR--PKLLFLDEPTSGL---------- 241 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~--P~llllDEPtsgL---------- 241 (330)
+|+... +-.+. ...+. .|-+.++++++.+ |+++|+||+++.+
T Consensus 109 -------------------lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 109 -------------------LGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -------------------TTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -------------------cCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 121100 00010 11233 3446678888755 9999999999988
Q ss_pred CH---HHHHHHHHHHHH---HHhcCCceEEEEEcCchH---------------HHHHhccEEEEEeCCeEEEEcC
Q 038004 242 DS---AASYHVMKRIVN---LAHEDGITVVASIHQPSS---------------DVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 242 D~---~~~~~i~~~L~~---l~~~~g~tvi~itHd~~~---------------~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|+ ..+..+.+.+++ ++++.|++||+++|.... .+..+||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 122233344444 346679999999996321 2567899999998876654443
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.08 E-value=1.2e-12 Score=133.56 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=100.4
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCC--------
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-------- 154 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-------- 154 (330)
+...+++++++.+.+|+.++|+||||||||||+++|+|++++. .-|.+.+++.+.......++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 4567899999999999999999999999999999999999763 238888887665443456888876430
Q ss_pred --------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 155 --------------LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 155 --------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.+..+++.+|+.....-......- .+..... .+.+|.-+.... ....+|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~---~~L~G~~~~~~~-----~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHA---GALLGDVRHDPF-----QSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCH---HHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCH---HhcCceEEechh-----hcCCcccccccccc
Confidence 111111111111000000000000 0000001 111221111011 12479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
.++....++.+||+||... |++..+..+++.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999988888874
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.08 E-value=1.8e-14 Score=132.69 Aligned_cols=138 Identities=15% Similarity=0.251 Sum_probs=90.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
.+++++.+.| ....+++++++.+++| ++|+||||||||||+++|++... .|.|.+++.++..
T Consensus 50 ~~l~~l~~~~-------~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~ 115 (278)
T 1iy2_A 50 EELKEIVEFL-------KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVG 115 (278)
T ss_dssp HHHHHHHHHH-------HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTT
T ss_pred HHHHHHHHHH-------HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhh
Confidence 3456665555 2346799999999999 89999999999999999999874 4889998764321
Q ss_pred -ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++++||... ..+.+++.|++.......... .....+..+.+.+++ .+|||||+||
T Consensus 116 ~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~ 177 (278)
T 1iy2_A 116 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDT 177 (278)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCC
Confidence 1123567777653 556677777774322111000 001112222222222 2689999999
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 038004 219 VSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 219 v~IAraL~~~P~llllDEP 237 (330)
+.|++|+..+|++ +|++
T Consensus 178 ~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 178 AIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp CEEEEEEESCTTS--SCHH
T ss_pred CEEEEEecCCchh--CCHh
Confidence 9999999999987 5665
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.06 E-value=2.4e-14 Score=129.81 Aligned_cols=140 Identities=15% Similarity=0.232 Sum_probs=91.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
.+++++.+.|. ...+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+...
T Consensus 26 ~~l~~l~~~~~-------~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~ 91 (254)
T 1ixz_A 26 EELKEIVEFLK-------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVG 91 (254)
T ss_dssp HHHHHHHHHHH-------CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTT
T ss_pred HHHHHHHHHHH-------CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhh
Confidence 45566665552 345799999999999 89999999999999999999874 3889998764311
Q ss_pred -ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++++||... ..+.+++.|++......+... .....+..+.+.+++ .+|||||+||
T Consensus 92 ~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~ 153 (254)
T 1ixz_A 92 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDT 153 (254)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCC
Confidence 1123566777643 556667777773322111000 001122222233222 2689999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCC
Q 038004 219 VSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPts 239 (330)
+.|++|+..+|++ +|++.-
T Consensus 154 ~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 154 AIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp CEEEEEEESCGGG--SCGGGG
T ss_pred CEEEEEccCCchh--CCHHHc
Confidence 9999999999987 677653
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=9.6e-12 Score=108.36 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=48.1
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHH
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVY 166 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~ 166 (330)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..... ....++|+||++.+++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999863 35666643321 1235789999887777666655543
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.95 E-value=3.3e-10 Score=98.00 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
+.+.+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999888653
No 162
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.95 E-value=2.6e-10 Score=109.02 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=27.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
=+++|+++.|.||+|||||||+..+++...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999987543
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.90 E-value=4.7e-11 Score=107.40 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=47.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++|+...+ + . ++++.+ ++++|+||||||||||+++|+|++.|. +|+|.++|.+...
T Consensus 9 ~l~l~~~~~~~-------~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~ 70 (227)
T 1qhl_A 9 SLTLINWNGFF-------A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATS 70 (227)
T ss_dssp EEEEEEETTEE-------E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------
T ss_pred EEEEEeeeccc-------C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCc
Confidence 47788776543 1 1 456666 899999999999999999999999874 6999999976410
Q ss_pred ----------ccCcEEEEeCC
Q 038004 142 ----------AFGTSAYVTQE 152 (330)
Q Consensus 142 ----------~~~~i~~v~Q~ 152 (330)
....++|++|+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 71 GSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp ------CGGGBCSSEEEEEEE
T ss_pred cccccchhhHhhcCcEEEEEe
Confidence 12458999874
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.84 E-value=7.7e-10 Score=98.70 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-GRLS 123 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~~ 123 (330)
.+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35689999999999999999999999999999999 9974
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.76 E-value=8.5e-12 Score=120.31 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=80.2
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e 163 (330)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+.......++++||... ++...+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999964 47776522111110012455666543 223322211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHH---cCCC------------c-ccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIRE---MGLQ------------D-AMDTRIGGWNVRGVSGGQKRRVSICIEILT 227 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---~~L~------------~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~ 227 (330)
.+ .+ ..... ........+...++. +.+. . ..+. ....+++|++||+..+.+++.
T Consensus 230 ~~---~r-~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~-----~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 230 GE---SR-DLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTM-----NEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp TT---TT-TCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEE-----CSCCCCHHHHTTEEEEEECCC
T ss_pred HH---Hh-hcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccCh-----hHHhhcHHHHHHHhhhhccCC
Confidence 10 00 00000 000011223333331 1111 1 1112 235789999999998888888
Q ss_pred CCCEEE-EeCCCC
Q 038004 228 RPKLLF-LDEPTS 239 (330)
Q Consensus 228 ~P~lll-lDEPts 239 (330)
.|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 888887 887765
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.71 E-value=2.5e-10 Score=99.71 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----cCcEEEEeCCCCCCCCCCHHHH
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA----FGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~----~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
.++.++|++++|+|+||||||||+++|+|.+ |.+.++|...... ....++++|++..++.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 3566799999999999999999999999975 7888888654210 1124566765433333333333
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.69 E-value=1.8e-09 Score=103.52 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=84.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCC--------CCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH---HHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSN--------TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME---AVYYS 168 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~--------~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e---~l~~~ 168 (330)
+++|+|++|||||||+|.|+|..... .+..|.|.++|.++.. ....|++.+.+. ..+.. .+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 39999999999999999999976421 0246889998864311 112334333221 11211 11110
Q ss_pred H--h--hcCCCCC-CH---HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCEEEEe
Q 038004 169 A--Q--LQLPDSM-SR---SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC----IEI-LTRPKLLFLD 235 (330)
Q Consensus 169 ~--~--~~~~~~~-~~---~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA----raL-~~~P~llllD 235 (330)
. . +...... .. .+..+.+.++++.+++.+..--.+.+ ++..+|+|++||+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 0 0 0000001 11 22334456778888765432000011 2345788899988887 555 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAH 258 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~ 258 (330)
+|+|++|......+++.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.68 E-value=7.5e-09 Score=89.61 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999888887653
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.68 E-value=9.5e-10 Score=100.24 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=36.0
Q ss_pred eeEEEEeE-EEEecCCcccCCccceEEeeEEEEeC---CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 64 VFLTWKDL-SVVVPSGKKENRKHAILQELTGYVEP---GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 64 ~~l~~~nl-~~~~~~~~~~~~~~~iL~~vsl~i~~---Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+++|| ++.|. +...+|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 99882 235799999999999 9999999999999999999999865
No 170
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.65 E-value=3.9e-08 Score=93.29 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=87.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..-|+.+..-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 3457777667899999999999999999999888764311 11 12344321 2344332
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+ .++......+.+..... ..||.++.+|+..|...+.+++++|.|+|...+
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 2 22222222222222211 269999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhcC-CceEEEEEc
Q 038004 245 ASYHVMKRIVNLAHED-GITVVASIH 269 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~-g~tvi~itH 269 (330)
..|...++++.+++ |..+|+|-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 35666677776666 789999865
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.62 E-value=3.1e-08 Score=98.16 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hcCCceEEEEEcCc
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPT----------SGLDSAASYHVMKRIVNLA---HEDGITVVASIHQP 271 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPt----------sgLD~~~~~~i~~~L~~l~---~~~g~tvi~itHd~ 271 (330)
|++++|..+++|....|.+|++||+. .|.|......+.++|..+- ...+..||.+||++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 67888889999999999999999994 3566665555566665552 23478899999986
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.58 E-value=4.6e-08 Score=93.21 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE--cCch
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLD-EPTSGLDSAASYHVMKRIVNLAHEDGITVVASI--HQPS 272 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllD-EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~it--Hd~~ 272 (330)
+.++|+|++|++. +.+...++-++++| ++..++|...+..+++.+..... +..+|++. ||+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 3578999999887 66666788899999 99999999988888877776542 78888888 8853
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.58 E-value=3.5e-08 Score=84.27 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++++.+.+| +++|+||||||||||+++|.+++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7889999999 9999999999999999999998765
No 174
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.55 E-value=1.1e-10 Score=116.32 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=83.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----cCcEEEEeCCCC-CCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----FGTSAYVTQEDT-LMTT 158 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----~~~i~~v~Q~~~-l~~~ 158 (330)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.++... .+++..+||... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35688899999999 88999999999999999999874 37888888654211 123456677653 3455
Q ss_pred CCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 159 LTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
+.+.|++......+.. ......+..+.+.+++. +||||++|+..|++|...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 5555555221110000 00012333334444432 4788888888899999999987 7887
Q ss_pred CC
Q 038004 238 TS 239 (330)
Q Consensus 238 ts 239 (330)
.-
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 175
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.54 E-value=7.9e-08 Score=100.63 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEE-EcCchHHHHHhccE
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVAS-IHQPSSDVFELFHN 281 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~i-tHd~~~~i~~~~d~ 281 (330)
+.-+|.|+.+|..++++++.++++||+|||.. +||......+++.+.... ....+|+++ ||+. ..+..+++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH-HHHHHHhcC
Confidence 44689999999999999999999999999996 999877777776666554 235667774 9986 467777764
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.51 E-value=2.9e-09 Score=92.97 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=42.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE--EECCEec
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI--LINGRKE 139 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I--~~~g~~~ 139 (330)
...+.+.+++..++|++++|+|+||||||||+++|++.+.. .|.+ +++|..+
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777888899999999999999999999999998752 4777 8887543
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.48 E-value=4.5e-08 Score=85.34 Aligned_cols=128 Identities=12% Similarity=0.147 Sum_probs=72.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 179 (330)
+++|+|+|||||||++++|+++ |...+++-.... .+ .+ +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~~---~~---~~-----~~--------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVAR---EV---VA-----KD--------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHHH---HT---TC-----SS---------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHHH---HH---cc-----CC---------------------
Confidence 6899999999999999999983 433443311100 00 00 00
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 180 ~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
...+.++.+.+|... -.+.|+.+|..+++.+..+|+.+.++ .+.++|.....+.+.+...
T Consensus 44 ---~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--- 103 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--- 103 (206)
T ss_dssp ---CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---
T ss_pred ---hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---
Confidence 012334455555321 13678899999999888887654333 3455666666555544332
Q ss_pred CCceEEEEEcCchHH-HHHhccEEEEEeC
Q 038004 260 DGITVVASIHQPSSD-VFELFHNLCLLAY 287 (330)
Q Consensus 260 ~g~tvi~itHd~~~~-i~~~~d~v~vl~~ 287 (330)
.+.++|+.+|.+... +...||.+++++.
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 255788888875321 2567999998864
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.46 E-value=8.3e-08 Score=83.15 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.5
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|.+|++++|+||||||||||+++|++++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46789999999999999999999999999854
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.46 E-value=6e-07 Score=85.40 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
+.++.++|+..+++..+.+|+++|+.-..+..|... ...+++++.+......+|++++.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 467889999999999999999888874444455443 44566666665332357777775
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.45 E-value=2.4e-08 Score=94.13 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---------c-----cCcEEEE-eCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---------A-----FGTSAYV-TQE 152 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---------~-----~~~i~~v-~Q~ 152 (330)
+++++|++++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999988653 5889887754311 0 3457888 676
Q ss_pred CCCCCCCCHHHHHHH
Q 038004 153 DTLMTTLTVMEAVYY 167 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~ 167 (330)
...+|..++.+++..
T Consensus 172 ~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 172 LNADPASVVFDAIKK 186 (320)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 555554445555543
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.45 E-value=4.2e-08 Score=84.59 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=8e-08 Score=83.60 Aligned_cols=39 Identities=26% Similarity=0.178 Sum_probs=24.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.44 E-value=4.2e-08 Score=85.72 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICI-EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAr-aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+|+ +++.+|.+++|||+|+++|..+...|.+.|....++ +.+.|. . ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T---TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c---CCceEEEECCC
Confidence 456 678888899999999999999899999988887643 233452 1 57999888764
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.41 E-value=2.5e-08 Score=90.42 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=44.2
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH---cCCCCCCCCccEEE--------ECCEeccc------ccCcEEEE
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALA---GRLSSNTEQTGEIL--------INGRKETL------AFGTSAYV 149 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~---Gl~~~~~~~~G~I~--------~~g~~~~~------~~~~i~~v 149 (330)
++++.+ ++|++++|+||||||||||+++|+ |+..+ ++|.|. .+|.+... ....++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 98765 479998 78865421 12357788
Q ss_pred eCCC
Q 038004 150 TQED 153 (330)
Q Consensus 150 ~Q~~ 153 (330)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8653
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.6e-06 Score=81.97 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=35.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCceEEEEEcCc
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH--EDGITVVASIHQP 271 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~--~~g~tvi~itHd~ 271 (330)
.+|.+|++||+... |......+...+.++.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888776643 1478999999985
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.34 E-value=1.9e-07 Score=80.04 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI 134 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~ 134 (330)
+|++++|+||||||||||+++|+++.++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987531 2455544
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.32 E-value=3e-06 Score=79.55 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=86.8
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
.-+++|+++.|.|++|||||||+..++... .+. ..| |. ...+.|+.-+..+ ...+.......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 468999999999999999999999888643 221 011 10 1234555433322 122222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH----
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG-QKRRVSICIEIL---TRPKLLFLDEPTSGLDS---- 243 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG-qrQRv~IAraL~---~~P~llllDEPtsgLD~---- 243 (330)
. .... ++++.+- + ....++. +.+.+..++.++ .+|+++|+|+.++-+..
T Consensus 166 g----~~~~-------~~~~~l~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDID-------NVMNNIY--------Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCHH-------HHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCHH-------HHhccEE--------E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 1111 1222111 0 1123433 345677778887 67999999999876432
Q ss_pred ----H----HHHHHHHHHHHHHhcCCceEEEEEcCchH---------------HHHHhccEEEEEeC
Q 038004 244 ----A----ASYHVMKRIVNLAHEDGITVVASIHQPSS---------------DVFELFHNLCLLAY 287 (330)
Q Consensus 244 ----~----~~~~i~~~L~~l~~~~g~tvi~itHd~~~---------------~i~~~~d~v~vl~~ 287 (330)
. ...+++..|+.++++.+.+||++.|-... .+.+.+|.++.|+.
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 1 13566777788887789999999885211 13445677777763
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.31 E-value=1.3e-06 Score=81.82 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=85.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.= .++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEES------SSCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEEC------CCCHHHH
Confidence 4457777766899999999999999999999888753210 12 12444432 1344443
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
.. ++......+.+....... ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 31 111111112221111110 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhcCCce--EEEEEcC
Q 038004 245 ASYHVMKRIVNLAHEDGIT--VVASIHQ 270 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~t--vi~itHd 270 (330)
...+...++++.++.|.. +|+|-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 344666667776666778 8888663
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.31 E-value=4.9e-06 Score=78.78 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=81.5
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
.-+++|+++.|.||+|||||||+..++... .+. ..| |. ...+.|+.-+..+ ...+.......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~--~~g-----g~-----~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG--AGG-----YP-----GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB--TTT-----BC-----CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 358899999999999999999999988742 111 001 11 1234555443322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHh----cCCCEEEEeCCCCCCCHH--
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEIL----TRPKLLFLDEPTSGLDSA-- 244 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~----~~P~llllDEPtsgLD~~-- 244 (330)
. ... +++++.+.+ ....++.+ .+.+..++.++ .+++++|+|+.++-+...
T Consensus 181 g----~~~-------~~~l~~l~~------------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLY------------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEE------------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeE------------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 122332211 01233333 34555666666 679999999999865431
Q ss_pred ----------HHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 245 ----------ASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 245 ----------~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
...+++..|+.++++.+.+||++.|-
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13567777888888889999999985
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.31 E-value=6.1e-06 Score=75.64 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCceEEEEEcCc---hHHH
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDS----------AASYHVMKRIVNLAHE---DGITVVASIHQP---SSDV 275 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~----------~~~~~i~~~L~~l~~~---~g~tvi~itHd~---~~~i 275 (330)
+++++.|..++.+...+|.+|++||+.+-++. ..+..++..+...... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 46777788888888899999999999876543 2233444444443211 245677888863 2334
Q ss_pred HHhccEEEEE
Q 038004 276 FELFHNLCLL 285 (330)
Q Consensus 276 ~~~~d~v~vl 285 (330)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665544
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.29 E-value=5.4e-08 Score=90.70 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--eEEEEEcCchHHHHHhccEEE
Q 038004 210 GVSGGQKRRVSICIEIL--TRPKLLFLDEPTSGLDSAA-SYHVMKRIVNLAHEDGI--TVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~--~~P~llllDEPtsgLD~~~-~~~i~~~L~~l~~~~g~--tvi~itHd~~~~i~~~~d~v~ 283 (330)
.+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++++..|. .+.+++|+- ..+..++|.+.
T Consensus 100 ~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 100 RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 3898886 5666676 78999999 7899876 66788888888755554 555666663 34556666543
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=2.5e-07 Score=82.44 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=33.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3468999999999999999999999997 28888888753
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.21 E-value=6.8e-07 Score=78.39 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999864
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.18 E-value=4.6e-07 Score=76.69 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=30.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.+|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999864 677787644
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=4.4e-07 Score=79.11 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|++++|+|+||||||||+++|++++.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987542 4777765543
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=6.6e-07 Score=87.67 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=46.9
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE-EeCCeEEEEcChh
Q 038004 227 TRPKLLFLDEPTSGLDS-AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL-LAYGKTIYFGPAS 297 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~-~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v-l~~G~iv~~g~~~ 297 (330)
.+|++||+||+..-.+. ..+..++..+..+. +.|..+|++||++...+..+.+++.- +..|.++...+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999876653 67888999998886 56889999999843222112222221 3456666666653
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.08 E-value=1.8e-06 Score=75.20 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++++|++++|+|++|||||||++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999999999975
No 198
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.07 E-value=1.3e-06 Score=85.07 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=28.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++.+|++++|+||||||||||+++|+++..+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998865
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.04 E-value=2e-07 Score=87.79 Aligned_cols=41 Identities=32% Similarity=0.276 Sum_probs=35.5
Q ss_pred ccceEEeeEEEEeCCc------EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 84 KHAILQELTGYVEPGQ------ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Ge------i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
....|++++..+..++ ++||+||||||||||+++|.+++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887777 9999999999999999999998763
No 200
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.04 E-value=1e-06 Score=88.85 Aligned_cols=43 Identities=37% Similarity=0.440 Sum_probs=36.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEE-ECCEec
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EIL-INGRKE 139 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~-~~g~~~ 139 (330)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 46799999999999999999999999998763 45 674 888543
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.03 E-value=6.8e-05 Score=73.28 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=100.4
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+++|+++.|.|++|+|||||+..++...... .| ..+.|+.= .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEEC------CCCHHHH
Confidence 34577776668999999999999999999998887643210 11 11333321 1233222
Q ss_pred HHH--HHhhcCC------CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Q 038004 165 VYY--SAQLQLP------DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFL 234 (330)
Q Consensus 165 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llll 234 (330)
..- ....... ..++..+ ..++...++.+.-.+..-. ....+|..+. .+.++.+. .+|+++|+
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~-----d~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYID-----DTPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEE-----CCTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEE-----CCCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 0000000 0122222 3344444444422222111 1235777665 34556555 58999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhcCCceEEEEEcCc-----------h-H------HHHHhccEEEEEe
Q 038004 235 DEPTSGLDS----------AASYHVMKRIVNLAHEDGITVVASIHQP-----------S-S------DVFELFHNLCLLA 286 (330)
Q Consensus 235 DEPtsgLD~----------~~~~~i~~~L~~l~~~~g~tvi~itHd~-----------~-~------~i~~~~d~v~vl~ 286 (330)
|..+.-... .....+...|+.++++.+++||+++|-- . . .+.+.||.|++|+
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 999765432 1235688889999988899999999821 0 0 2567899999986
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 397 r 397 (444)
T 2q6t_A 397 R 397 (444)
T ss_dssp E
T ss_pred c
Confidence 3
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.00 E-value=2e-06 Score=72.32 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999763
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.00 E-value=1.9e-06 Score=88.77 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=32.5
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
++.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 4567889999999999999999999999765431 135777 4554
No 204
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.99 E-value=2.3e-06 Score=75.06 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
...+|++++|+||||||||||++.|++..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999999865
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.96 E-value=1.9e-05 Score=77.19 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++.+++++|++||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988754
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.95 E-value=3.8e-06 Score=78.94 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998764
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.95 E-value=5.2e-06 Score=87.26 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=28.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.+++|+.+.|+||||||||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999999999874
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.94 E-value=8.1e-06 Score=68.04 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=24.5
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999873
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.89 E-value=1.9e-05 Score=73.02 Aligned_cols=29 Identities=34% Similarity=0.653 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999865
No 210
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.85 E-value=1.4e-05 Score=77.95 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=37.6
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
++++|+ +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 678887 89999999999999999999999998653 4777775543
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.83 E-value=0.00018 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997653
No 212
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.81 E-value=1.9e-06 Score=82.88 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=43.9
Q ss_pred EEEEeEEEEecCCcccCCccceEE--------------eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQ--------------ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~--------------~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||+..||. .+..|+ |+.+.+.+|+.++|+|++|+|||||++.|++.+
T Consensus 134 i~Fe~ltp~yP~------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHAN------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCC------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCC------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 667888888863 345677 899999999999999999999999999999865
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.81 E-value=0.00037 Score=66.33 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=47.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH------------HH----HHHHHHHHHHHhcCCceEEEEEcCchH-----
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGLDSA------------AS----YHVMKRIVNLAHEDGITVVASIHQPSS----- 273 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgLD~~------------~~----~~i~~~L~~l~~~~g~tvi~itHd~~~----- 273 (330)
|-..+++.++ .+++++|+|.++.-.... .+ .+++..|..++++.+++||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999999866311 11 234444555566779999999885211
Q ss_pred ----------HHHHhccEEEEEeCCeEE
Q 038004 274 ----------DVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 274 ----------~i~~~~d~v~vl~~G~iv 291 (330)
.+..++|-++.++..+.+
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 356678888888765543
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.75 E-value=5.9e-06 Score=70.16 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=30.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc--EEEECCEe
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG--EILINGRK 138 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G--~I~~~g~~ 138 (330)
.+|++++|+|++||||||++++|++.+.+ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999997643 25 56666543
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.71 E-value=1.4e-06 Score=82.43 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=41.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356889999999999999999999999999999999987542 35555544
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.71 E-value=4.6e-06 Score=74.29 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
..|+.++|.||+||||||++.+++..... ..|. ...++++++.|......++.+++........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~---~~~~-----------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~-- 137 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFI---QNDR-----------AAECNIVVTQPRRISAVSVAERVAFERGEEP-- 137 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHH---HTTC-----------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT--
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchh---hcCC-----------CCceEEEEeccchHHHHHHHHHHHHHhcccc--
Confidence 57999999999999999998877532110 0010 1224556666543333344444432111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccC--CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS-GLDSAASYHVMKR 252 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~--~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts-gLD~~~~~~i~~~ 252 (330)
. ..+|.......... +..+--.+.|...+.. ...+.+.+++|+||.-. ++|.......++.
T Consensus 138 ~--------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 138 G--------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp T--------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred C--------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 0 00110000011100 0001113556666653 33588999999999976 6777666445554
Q ss_pred HHHHHhcCCceEEEE-EcCchHHHHHhcc
Q 038004 253 IVNLAHEDGITVVAS-IHQPSSDVFELFH 280 (330)
Q Consensus 253 L~~l~~~~g~tvi~i-tHd~~~~i~~~~d 280 (330)
+.....+ -.+++++ |.+. ..+.++++
T Consensus 202 i~~~~~~-~~~il~SAT~~~-~~~~~~~~ 228 (235)
T 3llm_A 202 VVQAYPE-VRIVLMSATIDT-SMFCEYFF 228 (235)
T ss_dssp HHHHCTT-SEEEEEECSSCC-HHHHHHTT
T ss_pred HHhhCCC-CeEEEEecCCCH-HHHHHHcC
Confidence 4443322 2344444 5553 34555554
No 217
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=3.8e-05 Score=67.14 Aligned_cols=29 Identities=41% Similarity=0.613 Sum_probs=23.7
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345555554 99999999999999999885
No 218
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.64 E-value=0.00036 Score=64.90 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=88.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEE-ECCEecccc-cCcEEEEeCCCCCCCCCCHHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEIL-INGRKETLA-FGTSAYVTQEDTLMTTLTVMEAVYYSA 169 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~-~~g~~~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~~ 169 (330)
.-+++|+++.|.|++|+|||||+..++.-. .+ .|..+ +.|...... ...+.|+.-+..+ ...+......
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~----~~~~~~~~~~~~gg~~~~~v~yi~~e~~~----~~~~l~~~~~ 164 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP----EFLFYDEEAVSKGEVAQPKAVYIDTEGTF----RPERIMQMAE 164 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG----GGEECCTTTSCTTTTSSEEEEEEESSSCC----CHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc----ccccccccccccCCCCCceEEEEECCCCC----CHHHHHHHHH
Confidence 357899999999999999999998887521 11 11110 001000000 0235566543322 1222222222
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHh---cCCCEEEEeCCCCCCC---
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEIL---TRPKLLFLDEPTSGLD--- 242 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~---~~P~llllDEPtsgLD--- 242 (330)
.+. ... +++++.+-+ ....+.-+ .+-+..++.++ .+++++|+|.-++-..
T Consensus 165 ~~g----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~ 221 (322)
T 2i1q_A 165 HAG----IDG-------QTVLDNTFV------------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY 221 (322)
T ss_dssp HHT----CCH-------HHHHHTEEE------------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHC
T ss_pred HcC----CCH-------HHHhcCEEE------------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHh
Confidence 221 111 112221111 01223332 23344455555 4699999999875421
Q ss_pred -----HH----HHHHHHHHHHHHHhcCCceEEEEEcCch---------------HHHHHhccEEEEEeCC
Q 038004 243 -----SA----ASYHVMKRIVNLAHEDGITVVASIHQPS---------------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 243 -----~~----~~~~i~~~L~~l~~~~g~tvi~itHd~~---------------~~i~~~~d~v~vl~~G 288 (330)
.. ...+++..|+.++++.+.+||++.|-.. ..+.+.+|.++.|+..
T Consensus 222 ~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 222 TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 11 2356677788888888999999877311 1366778988888743
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.63 E-value=2.3e-05 Score=68.70 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE--------CCEeccc------ccCcEEEEeCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI--------NGRKETL------AFGTSAYVTQED 153 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~--------~g~~~~~------~~~~i~~v~Q~~ 153 (330)
+.+++|+|+|||||||++++|++.+.......|.|.. +|.++.. ....+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865221124577765 4543321 123467777754
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.63 E-value=2.1e-05 Score=70.16 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=27.1
Q ss_pred eEEeeEEEEe---CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 87 ILQELTGYVE---PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 87 iL~~vsl~i~---~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3777777776 899999999999999999999999875
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00016 Score=65.57 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466679999999999999999999865
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.58 E-value=6.8e-06 Score=82.60 Aligned_cols=48 Identities=33% Similarity=0.541 Sum_probs=40.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
..++.++++++ +|++++|+||||+|||||+++|++.+.+ ..|.|.+.|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 45678888888 8999999999999999999999998865 247776665
No 223
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.55 E-value=3.1e-05 Score=66.17 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.5
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 224
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.52 E-value=8.3e-05 Score=72.54 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=73.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC---------CCCCccEEEECCEecc---c--ccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS---------NTEQTGEILINGRKET---L--AFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~---------~~~~~G~I~~~g~~~~---~--~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.++|+|+||+|||||+|.|+|.... ..+..|.+.++|+... . ..+...+.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999998531 0124689999997532 1 112233444554555555555555
Q ss_pred HHHHhh----cCCCCCCHHHHHHHHHHHHHHcCCCcc--cccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Q 038004 166 YYSAQL----QLPDSMSRSEKRERAEMTIREMGLQDA--MDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLDEP 237 (330)
Q Consensus 166 ~~~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~--~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllDEP 237 (330)
..+-.. ......+. ...++.+.+...+..-. .++.=. ....+-+--+- .-.+++.+. ...+++ +
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDL-VVHREKRYDEF-TKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGG-STTGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccC-CCchhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence 443110 01111222 22445566666554311 111100 00001111111 113444443 233443 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc
Q 038004 238 TSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~ 259 (330)
+|++.-.....+++.+.+...+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 8998888888888877776543
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.52 E-value=8.4e-05 Score=70.89 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=27.3
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+++..+++.+| +.+|+|+||||||||+.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57778888775 99999999999999999986
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.50 E-value=4.2e-05 Score=66.41 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=25.4
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+|.+++|+||||||||||++.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3588999999999999999999999866
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.49 E-value=2.6e-05 Score=74.02 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEe
Confidence 357899999999999999999999976442 35555444
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.48 E-value=2.5e-05 Score=68.27 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=33.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc--EEEECCE
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG--EILINGR 137 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G--~I~~~g~ 137 (330)
.+++|.+++|+|++||||||+++.|++.+.+ ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECCh
Confidence 3568999999999999999999999998753 246 6777654
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.46 E-value=5e-05 Score=65.56 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 038004 100 ILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G 120 (330)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.45 E-value=0.00012 Score=62.48 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=20.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999983
No 231
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.39 E-value=8e-05 Score=62.59 Aligned_cols=27 Identities=48% Similarity=0.689 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999964
No 232
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.36 E-value=6.4e-05 Score=64.37 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=28.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
.+++|+|+||||||||++.|++.+......-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58899999999999999999987543211236666654
No 233
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.33 E-value=0.0072 Score=59.66 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCceEEEEEcCch--------------
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGL-------DS-AASYHVMKRIVNLAHEDGITVVASIHQPS-------------- 272 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgL-------D~-~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------------- 272 (330)
+-+..++.++ .+|+++|+|=-+. + +. .....++..|+.++++.+++||+++|--.
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 4444555554 4799999995432 2 21 23356888889999888999999988421
Q ss_pred -------HHHHHhccEEEEEe
Q 038004 273 -------SDVFELFHNLCLLA 286 (330)
Q Consensus 273 -------~~i~~~~d~v~vl~ 286 (330)
..+.+.+|-|++|+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 23567899999996
No 234
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.29 E-value=9.8e-05 Score=66.49 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
...++.++.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 4567889999999999999999999987642 567777743
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00011 Score=63.36 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+++|+|++|||||||++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00014 Score=61.88 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.+|.+++|+|++||||||+++.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987653
No 237
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.25 E-value=1.9e-05 Score=75.25 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=35.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.+.||+..| +.+.++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 57788887766 2356788999977 9999999999999999988754
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.25 E-value=2.4e-05 Score=74.51 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=33.2
Q ss_pred ceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++.+++.+++|++ ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888899998 9999999999999999999864
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.24 E-value=0.002 Score=60.85 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+...+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998754
No 240
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.24 E-value=0.004 Score=59.39 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
-+++|+++.|.|++|+|||||+..++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999977764
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00013 Score=61.69 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
No 242
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=2.5e-05 Score=73.25 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=35.8
Q ss_pred ccceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCC
Q 038004 84 KHAILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
...+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45678888888999998 999999999999999999997643
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.21 E-value=0.00017 Score=59.83 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.16 E-value=0.0002 Score=63.61 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.+++|+|++||||||+++.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999999743
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00027 Score=66.25 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356688999999999999999998765
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.16 E-value=0.00023 Score=59.81 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00023 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 248
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.00014 Score=65.14 Aligned_cols=34 Identities=38% Similarity=0.727 Sum_probs=24.2
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
No 249
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.09 E-value=0.0018 Score=57.52 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
....-+.|.||+|+|||||+++|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999998754
No 250
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.07 E-value=3.9e-05 Score=66.10 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++++|+..+++. ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357889998888875 679999999999999999873
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.07 E-value=0.0015 Score=73.24 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 38999999999999999999999998754
No 252
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.05 E-value=5.7e-05 Score=70.13 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=36.0
Q ss_pred Ee-eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 89 QE-LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 89 ~~-vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
++ ++++.+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999987642 366666543
No 253
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.03 E-value=0.00032 Score=58.97 Aligned_cols=22 Identities=41% Similarity=0.755 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 254
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.03 E-value=0.00031 Score=67.79 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----C---CCCCccEEEECC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS-----S---NTEQTGEILING 136 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-----~---~~~~~G~I~~~g 136 (330)
.+..|..++|+|+||+|||||+++|+|... | -.+..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 446788899999999999999999999721 0 012457777765
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.01 E-value=0.00028 Score=59.68 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
No 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00038 Score=58.82 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.96 E-value=0.00037 Score=57.59 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDAL 118 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l 118 (330)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.96 E-value=0.00034 Score=63.08 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999754
No 259
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.95 E-value=0.0014 Score=64.07 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.1
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.-|+.+..-+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 44665555589999999999999999999887765
No 260
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.94 E-value=0.0004 Score=62.22 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.-+++|.||+||||||+++.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998653
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0042 Score=58.19 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHH---HHHHHhcCCceEEEEEcC
Q 038004 213 GGQKRRVSICIEI--L--TRPKLLFLDEPTSGLD-----S----------AASYHVMKR---IVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 213 GGqrQRv~IAraL--~--~~P~llllDEPtsgLD-----~----------~~~~~i~~~---L~~l~~~~g~tvi~itHd 270 (330)
-++++.+.++..| + .+|+++++|=-++-.- . ..++.+-+. |..++++.+.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3455556677666 4 3799999998766431 1 122233333 444577889999999887
No 262
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.93 E-value=0.00045 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.91 E-value=0.0005 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998644
No 264
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.91 E-value=0.00048 Score=60.04 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.86 E-value=0.00052 Score=63.16 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
..+.++.|.||||||||||.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3577899999999999999999987542 15566665
No 266
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.84 E-value=0.00055 Score=58.39 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.82 E-value=0.00056 Score=57.68 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+.++.|+|++||||||+++.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999844
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.80 E-value=0.00057 Score=59.11 Aligned_cols=23 Identities=52% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999997654
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.80 E-value=0.00035 Score=60.34 Aligned_cols=24 Identities=42% Similarity=0.771 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.80 E-value=0.00064 Score=56.79 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 271
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.00058 Score=57.38 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 272
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.79 E-value=0.00065 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.78 E-value=0.00074 Score=57.79 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999865
No 274
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00078 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987653
No 275
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.75 E-value=0.00073 Score=57.38 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998643
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.00078 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998643
No 277
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.69 E-value=0.0009 Score=57.65 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|.+++|.|+.||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998643
No 278
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.68 E-value=0.00073 Score=61.19 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
|||+++......+++.+.+.......+..+..|.. ..+.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHH
Confidence 99999999999999999888765555556666764 567777776543
No 279
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.00094 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.64 E-value=0.019 Score=64.47 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=83.9
Q ss_pred ceEEeeE--EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 86 AILQELT--GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 86 ~iL~~vs--l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
.-|+.+- .=+++|.++.|.||+|+|||||+..++..... .| ..+.|+.-+..+.+
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~------ 425 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP------ 425 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH------
Confidence 3455553 24889999999999999999998877653211 11 12445443332211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLDEPTSGL 241 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllDEPtsgL 241 (330)
+ .+.. +|+... +-.+. ..-++.|- +.+++.++ .+|+++++|..++-.
T Consensus 426 -~-~a~~----------------------lGvd~~-~L~i~----~~~~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 426 -I-YARK----------------------LGVDID-NLLCS----QPDTGEQA--LEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -H-HHHH----------------------TTCCGG-GCEEE----CCSSHHHH--HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -H-HHHH----------------------cCCCHH-HeEEc----CCCCHHHH--HHHHHHHHHhcCCCEEEECCHHHhh
Confidence 0 0111 111100 00000 01133332 34555554 589999999998765
Q ss_pred CH-------------HHHH---HHHHHHHHHHhcCCceEEEEEcCc---------------hHHHHHhccEEEEEeCCe
Q 038004 242 DS-------------AASY---HVMKRIVNLAHEDGITVVASIHQP---------------SSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 242 D~-------------~~~~---~i~~~L~~l~~~~g~tvi~itHd~---------------~~~i~~~~d~v~vl~~G~ 289 (330)
.. .... +++..|..++++.+++||++.|-- ...+..++|-++.++..+
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 41 1122 344444444677899999998841 124678899888876543
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.00093 Score=56.34 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
No 282
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.61 E-value=0.00098 Score=57.10 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 283
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.57 E-value=0.00084 Score=56.42 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.55 E-value=0.0011 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998754
No 285
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998643
No 286
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.49 E-value=0.0014 Score=55.66 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 287
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.47 E-value=0.0016 Score=56.85 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 288
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.47 E-value=0.0015 Score=54.33 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 289
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0013 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 290
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.42 E-value=0.0026 Score=59.39 Aligned_cols=37 Identities=32% Similarity=0.278 Sum_probs=32.4
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
....+++..+.+ .|.-++|+|+||+|||||+..|.+.
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888888 8899999999999999999999874
No 291
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.41 E-value=0.0015 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
No 292
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0017 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
No 293
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0017 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.38 E-value=0.002 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 296
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.37 E-value=0.0018 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.37 E-value=0.0015 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 298
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.36 E-value=0.0015 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0018 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999843
No 300
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.36 E-value=0.0014 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++|+|++|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 68999999999999999988643
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.35 E-value=0.0016 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 302
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.35 E-value=0.0027 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 303
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.33 E-value=0.0018 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999754
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.32 E-value=0.0018 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.32 E-value=0.012 Score=66.84 Aligned_cols=73 Identities=7% Similarity=-0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCceEEEEEcCch------
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGLD-S------------AASYHVMKRIVNL---AHEDGITVVASIHQPS------ 272 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgLD-~------------~~~~~i~~~L~~l---~~~~g~tvi~itHd~~------ 272 (330)
|-+.+++.++ .+|+++++|.-++-.. . .....+.+.|+.+ +++.+++||++.|--.
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 3456666664 5799999999876552 1 1122344444444 6788999999988421
Q ss_pred ---------HHHHHhccEEEEEeCCe
Q 038004 273 ---------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 273 ---------~~i~~~~d~v~vl~~G~ 289 (330)
..+.+.+|.++.|+...
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEecc
Confidence 13677899998887654
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.32 E-value=0.0018 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 307
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.32 E-value=0.002 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.32 E-value=0.0021 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
No 309
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.31 E-value=0.0012 Score=63.06 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=44.8
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCceEEEEEcCchH-----------HHHHhccEEEEEeC
Q 038004 227 TRPKLLFLDEPTSGLD---SAASYHVMKRIVNLAHEDGITVVASIHQPSS-----------DVFELFHNLCLLAY 287 (330)
Q Consensus 227 ~~P~llllDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~-----------~i~~~~d~v~vl~~ 287 (330)
..|.++++||.-.-++ +.....+.+++++.+ +.|..++++||.+.. .+...|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3689999999988884 566667777777765 679999999999753 23455677777664
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.0019 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.31 E-value=0.0021 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 312
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.30 E-value=0.0018 Score=56.62 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.29 E-value=0.0021 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 314
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.28 E-value=0.0019 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999865
No 315
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.27 E-value=0.0019 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
No 316
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.27 E-value=0.002 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|+.|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.27 E-value=0.0019 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
No 318
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.27 E-value=0.002 Score=57.68 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.++|+|.+|+|||||++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999999653
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.26 E-value=0.002 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999754
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.26 E-value=0.002 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 321
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.26 E-value=0.002 Score=54.06 Aligned_cols=23 Identities=48% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999999864
No 322
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0018 Score=53.53 Aligned_cols=23 Identities=48% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998854
No 323
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.25 E-value=0.0052 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999766654
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.25 E-value=0.0017 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0022 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998744
No 326
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.24 E-value=0.002 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998854
No 327
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.23 E-value=0.0021 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 328
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.22 E-value=0.002 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999863
No 329
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.21 E-value=0.0036 Score=59.64 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC-----C---CCCCccEEEECC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS-----S---NTEQTGEILING 136 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~-----~---~~~~~G~I~~~g 136 (330)
|-.++|+|.+|+|||||++.|+|-.. | -.+..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999431 0 012457777765
No 330
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.21 E-value=0.0027 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998764
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.20 E-value=0.003 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998843
No 332
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0025 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-+++|.|..||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.19 E-value=0.0026 Score=57.28 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
No 334
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.19 E-value=0.0023 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|++|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.15 E-value=0.0025 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.15 E-value=0.0024 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999864
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.13 E-value=0.0025 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 338
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.12 E-value=0.0025 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 339
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.12 E-value=0.0026 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 340
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.11 E-value=0.0027 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
..+.|.||+|+|||||+++|++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 58999999999999999999997643
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.11 E-value=0.0027 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.10 E-value=0.0029 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.09 E-value=0.0031 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++-+++|.|++||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999753
No 344
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.09 E-value=0.0022 Score=58.11 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||+|.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.08 E-value=0.0028 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 346
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.07 E-value=0.081 Score=51.58 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999997654
No 347
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.07 E-value=0.0027 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 348
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.06 E-value=0.0017 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
=.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
No 349
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.05 E-value=0.0028 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999964
No 350
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.05 E-value=0.0029 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999999754
No 351
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.04 E-value=0.0029 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999999764
No 352
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.04 E-value=0.0032 Score=58.26 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999963
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.003 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.03 E-value=0.003 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
No 355
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.03 E-value=0.003 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
-+++|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 356
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.02 E-value=0.003 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999754
No 357
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.00 E-value=0.0022 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|+|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 358
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.00 E-value=0.004 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998754
No 359
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.98 E-value=0.0017 Score=59.82 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++-++||.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 360
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.98 E-value=0.0029 Score=60.39 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999986
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.98 E-value=0.0055 Score=57.77 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999865
No 362
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.98 E-value=0.0038 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999765
No 363
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.97 E-value=0.0036 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
No 364
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.97 E-value=0.0033 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.94 E-value=0.0033 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 366
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.94 E-value=0.0034 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.93 E-value=0.0035 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.92 E-value=0.0035 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.92 E-value=0.0039 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998643
No 370
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.91 E-value=0.0036 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.90 E-value=0.004 Score=57.66 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 372
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0035 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999843
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.89 E-value=0.0037 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
No 374
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.89 E-value=0.0037 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.87 E-value=0.0039 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999999753
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.87 E-value=0.0037 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999854
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.86 E-value=0.0029 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999764
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.85 E-value=0.0043 Score=53.84 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999763
No 379
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.85 E-value=0.004 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 380
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0037 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 381
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.85 E-value=0.0038 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.85 E-value=0.0039 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357999999999999999999754
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.85 E-value=0.0041 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.84 E-value=0.0063 Score=53.22 Aligned_cols=36 Identities=28% Similarity=0.217 Sum_probs=28.9
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+...-+.+ .|..+.|+||+|+|||||...|+...
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566665554 67889999999999999999998653
No 385
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.83 E-value=0.0044 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0044 Score=56.50 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 387
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.81 E-value=0.0043 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 388
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.81 E-value=0.004 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999999864
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.78 E-value=0.0047 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
No 390
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.78 E-value=0.0044 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
No 391
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.78 E-value=0.0043 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0043 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 36899999999999999999854
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.0041 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 394
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.75 E-value=0.0047 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 395
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.75 E-value=0.0046 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.75 E-value=0.0046 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|.+|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999973
No 397
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0048 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999964
No 398
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.74 E-value=0.0048 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.73 E-value=0.0051 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998765
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.73 E-value=0.006 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998643
No 401
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.71 E-value=0.005 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0046 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999988653
No 403
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.70 E-value=0.0045 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999975
No 404
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.70 E-value=0.005 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.70 E-value=0.005 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
No 406
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.70 E-value=0.0047 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.005 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 408
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.70 E-value=0.0036 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.69 E-value=0.0041 Score=57.44 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=32.1
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 227 TRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 227 ~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
.++.+|++||+-. .-+...+..++..+..+. +.+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 4699999999865 234477888888888876 446777777764
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.69 E-value=0.005 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999999754
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.69 E-value=0.0051 Score=59.45 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999754
No 412
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.69 E-value=0.0047 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0051 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.67 E-value=0.0047 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 415
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.66 E-value=0.0052 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
No 416
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.65 E-value=0.0045 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 417
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.65 E-value=0.0064 Score=59.79 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=30.3
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++.+ +.+-+|+..+|+|++|+|||||++.|+...
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 455555 667789999999999999999999998754
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.64 E-value=0.0066 Score=53.33 Aligned_cols=28 Identities=46% Similarity=0.652 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-+|.++.|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 419
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.64 E-value=0.0057 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 420
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.62 E-value=0.021 Score=64.99 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.9
Q ss_pred eEEeeEE--EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 87 ILQELTG--YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 87 iL~~vsl--~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-|+.+-. =+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3555553 58999999999999999999999988754
No 421
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.61 E-value=0.0055 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 422
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0053 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 423
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.59 E-value=0.0063 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 424
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.57 E-value=0.0055 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999965
No 425
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.55 E-value=0.0061 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 426
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.55 E-value=0.0063 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.55 E-value=0.0072 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 428
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.54 E-value=0.0058 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.53 E-value=0.0065 Score=56.91 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.53 E-value=0.0072 Score=56.47 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 431
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.52 E-value=0.0062 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999988753
No 432
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.52 E-value=0.0061 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 433
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.52 E-value=0.0074 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..++.|+||.||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999998643
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.51 E-value=0.0081 Score=51.49 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+|.+|++||.-. +|......+++.+.+. ..+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4578999999765 7877777777666543 23678888888753
No 435
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.51 E-value=0.0058 Score=54.33 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+|.++.|.|++||||||+++.|...+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998765
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.49 E-value=0.0065 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 437
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.49 E-value=0.0064 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|++|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.46 E-value=0.0064 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999854
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.45 E-value=0.013 Score=50.20 Aligned_cols=34 Identities=24% Similarity=0.108 Sum_probs=26.6
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
..++..-..+ .|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455554444 688899999999999999998875
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.44 E-value=0.0043 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=9.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 441
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.41 E-value=0.01 Score=51.92 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=44.0
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEe
Q 038004 225 ILTRPKLLFLDEPTS----GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLA 286 (330)
Q Consensus 225 L~~~P~llllDEPts----gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~ 286 (330)
--.+|+++++|--+. .-|......++..|+.++++.+.++++++|-.. ..+...+|-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346889999986432 124455667888889998888999999998521 12345789988885
No 442
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.40 E-value=0.0063 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.38 E-value=0.0089 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.37 E-value=0.0023 Score=67.21 Aligned_cols=42 Identities=33% Similarity=0.524 Sum_probs=33.3
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
.++.+.+++.+.|+||+|+|||||+++|++.... +-+.+++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~ 545 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGP 545 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEech
Confidence 3566789999999999999999999999998643 34455543
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0072 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.0087 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
|.+++|-|..||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999765
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.33 E-value=0.0096 Score=52.48 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998764
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.31 E-value=0.024 Score=55.92 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 208 VRGVSGGQKRRVSICIEIL--T---------------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~--~---------------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
..++||||+|-.-+|.+.. . .-.++++||. +-+|.......+++++++ |.-+|+++-+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 3589999999655554432 2 2357999999 999999999998888754 7889999866
Q ss_pred chHHHHHhccEEEEEe
Q 038004 271 PSSDVFELFHNLCLLA 286 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~ 286 (330)
.+..++|.++.+.
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3567788887765
No 449
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.30 E-value=0.0048 Score=54.95 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 223 IEILTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 223 raL~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
.+|..+|+++|+||+-. ..+.......++.+..+. ..|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 33446899999999764 233222233344444444 45889999998
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.28 E-value=0.01 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.++.|.|++||||||+++.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998755
No 451
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.27 E-value=0.0091 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 452
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.26 E-value=0.0088 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|.+|+|||||++.+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998753
No 453
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.002 Score=59.74 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
++.+|++|| ...|+...+..+++.+.+.. ....+|++++++......+.+|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhcc
Confidence 667999999 78889988888888887753 2456777777654333333344
No 454
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.24 E-value=0.0074 Score=58.91 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0094 Score=52.02 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|.+|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999743
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.20 E-value=0.0097 Score=48.45 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
..+|++||.- .|++..+..+++.|... .....+|++|+..
T Consensus 77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 4579999984 67888898888888332 2346778888764
No 457
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.20 E-value=0.011 Score=51.75 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998643
No 458
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.18 E-value=0.0041 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=4.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.17 E-value=0.0039 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998643
No 460
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.17 E-value=0.009 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37899999999999999998754
No 461
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.0098 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.11 E-value=0.0067 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|.|+.||||||+++.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.11 E-value=0.0063 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999653
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.07 E-value=0.01 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 465
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.03 E-value=0.013 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 466
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.00 E-value=0.011 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 467
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.95 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 468
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.87 E-value=0.015 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..+.|.||+|+|||||++.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999998765
No 469
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.85 E-value=0.0061 Score=54.48 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=22.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+....| +.|.||+|+|||||+++|+...
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 333445 6799999999999999999753
No 470
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.82 E-value=0.014 Score=49.35 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.++.+|++||. ..++...+..+.+.+.... .+..+|++++.+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCCh
Confidence 36889999995 4567777777777776542 356777787764
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.81 E-value=0.015 Score=56.14 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 472
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.74 E-value=0.018 Score=49.11 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEeC
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLAY 287 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~~ 287 (330)
+++++++||.-. +++. +++.|+.++++ |..|+++.++.. ..+..++|.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 5533 45566767654 889999888422 345567999987754
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.58 E-value=0.019 Score=53.36 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..-+.|.||.|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678899999999999999999865
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.54 E-value=0.018 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+...+.|.||+|+|||||+++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999875
No 475
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.53 E-value=0.016 Score=57.55 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998764
No 476
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.50 E-value=0.018 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-.+||+|+.||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 477
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.47 E-value=0.017 Score=55.50 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 038004 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234 (330)
Q Consensus 185 ~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llll 234 (330)
.+..+++.++.... ...+|.++..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766432 126899998888777777779999988
No 478
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.47 E-value=0.022 Score=53.41 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.4
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
|+.+-.-+.+|.++.|.||.|+|||||+..++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444335688899999999999999999999874
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.41 E-value=0.022 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998654
No 480
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.38 E-value=0.019 Score=53.93 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..+.|.||+|+||||++++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999865
No 481
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.37 E-value=0.023 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999965
No 482
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.39 E-value=0.0074 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4789999999999999988753
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.35 E-value=0.021 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.|.||+|+|||+|+++|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999754
No 484
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.34 E-value=0.021 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467799999999999999999765
No 485
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.33 E-value=0.025 Score=52.29 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.30 E-value=0.025 Score=52.28 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568899999999999999998753
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.28 E-value=0.018 Score=55.76 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.27 E-value=0.022 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.25 E-value=0.022 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998876
No 490
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.24 E-value=0.014 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.794 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHH-HHcC
Q 038004 101 LAIMGPSGCGKSTLLDA-LAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~-l~Gl 121 (330)
++|+|+.|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999998 6554
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.16 E-value=0.015 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999964
No 492
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.16 E-value=0.021 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999986
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.11 E-value=0.013 Score=57.18 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=23.7
Q ss_pred EeCCc--EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 95 VEPGQ--ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 95 i~~Ge--i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+..|. .+.|.||+|+|||||+++|+....
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444 488999999999999999998764
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.028 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998754
No 495
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.04 E-value=0.027 Score=56.80 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|.++.|.|.+||||||+.+.|.-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 496
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.03 E-value=0.028 Score=57.23 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.++.|.|.+||||||+.+.|.-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 497
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.99 E-value=0.025 Score=56.66 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|..|+|||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
No 498
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.96 E-value=0.023 Score=55.71 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
|=.++|+|+.|+|||||+|.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999985
No 499
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.95 E-value=0.023 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999986
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.95 E-value=0.033 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.+++|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56788999999999999999988663
Done!