Your job contains 1 sequence.
>038006
MLKIPISIGAGQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFAHHQ
HQHQHQHQHHNLVGGSPFSRVSLQSTTEHSSPSSSCFSNTGFCCFSEDDASPFSKPNNVL
YNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNI
GGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSD
YQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLR
HQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQ
LVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRS
INQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHL
LSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGN
YLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKA
ALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRC
IAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLS
TQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHAS
LIEAARRHTNLRTSPYCKRIFSRNISKK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038006
(808 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 1228 1.8e-131 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 1171 2.8e-122 2
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 1031 2.7e-107 2
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 1027 1.1e-103 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 931 1.6e-93 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 828 1.3e-82 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 724 3.3e-76 3
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 666 2.0e-65 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 575 8.6e-56 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 529 7.1e-53 3
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 556 5.0e-52 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 496 6.4e-45 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 474 4.8e-42 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 472 1.4e-41 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 472 1.4e-41 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 462 1.6e-41 2
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 465 2.4e-41 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 472 2.8e-41 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 470 3.1e-41 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 468 4.2e-41 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 465 4.7e-41 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 469 6.4e-41 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 469 6.5e-41 2
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 440 9.0e-41 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 466 9.7e-41 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 467 1.4e-40 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 461 1.7e-40 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 461 1.8e-40 2
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 414 3.5e-40 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 457 4.0e-40 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 462 4.2e-40 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 461 4.5e-40 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 461 5.6e-40 2
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 462 6.9e-40 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 460 7.3e-40 2
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 457 9.0e-40 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 458 1.1e-39 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 458 1.4e-39 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 457 1.6e-39 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 457 1.6e-39 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 457 1.8e-39 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 443 7.7e-39 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 450 3.1e-38 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 444 3.2e-38 2
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 440 3.3e-38 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 443 3.9e-38 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 441 3.6e-37 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 433 5.8e-37 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 431 5.9e-37 2
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 402 8.6e-36 2
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 391 3.3e-33 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 382 3.9e-32 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 369 7.9e-32 1
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 364 6.7e-31 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 366 3.8e-30 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 355 2.3e-28 2
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 360 2.5e-28 2
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 349 2.5e-28 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 309 1.1e-23 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 268 3.6e-22 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 232 2.6e-18 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 238 1.1e-16 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 238 1.1e-16 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 211 1.9e-14 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 209 3.3e-14 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 213 6.1e-14 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 211 1.0e-13 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 211 1.0e-13 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 199 2.9e-13 2
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 207 3.0e-13 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 198 7.3e-13 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 184 1.6e-10 1
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 182 2.8e-10 2
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 179 5.2e-10 1
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 182 5.5e-10 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 182 8.5e-10 2
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 182 8.5e-10 2
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 164 1.3e-08 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 173 1.7e-08 2
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 161 9.2e-08 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 164 2.6e-07 2
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 147 9.7e-07 1
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 144 1.6e-06 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 139 0.00038 2
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 123 0.00039 1
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 1228 (437.3 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
Identities = 225/320 (70%), Positives = 275/320 (85%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D++GY+Y MAKDQ+GCRFLQR+FDEGT +D IIF+EVI H+VELMM+ FGNYL+QKLL+
Sbjct: 333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
VCTEEQ T+I+L+ TEEPGQL+R+ LN YGTRVVQ+L+ET+++ +Q+SLVK AL+PGFLD
Sbjct: 393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
LIKDLNGNHV+QRCLQCLS EDN+ FDAA KFC +IATH+HGCCVLQ+CIA+S+ +
Sbjct: 453 LIKDLNGNHVIQRCLQCLSTEDNK--FIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQ 510
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
R+KLI EIS+N LAQDPFGNY VQ++IEL+IPS A +L+Q KGHYV LS QKFSSH+
Sbjct: 511 REKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHM 570
Query: 729 VEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH 788
VE+CL H ESR QIV EL+SVPHF+QLLQDP+AN+VIQ AL+ TKGPLHASL+E R H
Sbjct: 571 VERCLMHCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH 630
Query: 789 TNLRTSPYCKRIFSRNISKK 808
+ LR +PYCKRIFSRN+ KK
Sbjct: 631 SILRNNPYCKRIFSRNLLKK 650
Score = 114 (45.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 72/369 (19%), Positives = 152/369 (41%)
Query: 406 EGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVIC 465
E F ++SF + G+SI+ S R + N EI + P +C G Y
Sbjct: 288 EPFSSDESFFMNGKSIDHQRSNTRALMSN--NGNPTEICHPSLP-NMCDIQGYVYLMAKD 344
Query: 466 DNG-QSLMDIRCPLHXXXXXXXXADVRGYIYSMAKDQNGCRFLQRVFD---EGTFLDLQI 521
+G + L I +V ++ + D G +Q++ D E + +
Sbjct: 345 QHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEEQRTQIVL 404
Query: 522 IFDEVIDHIVELMMEQFGNYLVQKLLN-VCTEEQMTRILLMVTEEPGQLVRVC-LNTYGT 579
+ E ++ + + +G +VQ+L+ + + +Q++ + L + PG L + LN G
Sbjct: 405 VATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLAL--RPGFLDLIKDLN--GN 460
Query: 580 RVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDA 639
V+Q+ ++ L T + AA K ++ +G VLQ+C+ + E L +
Sbjct: 461 HVIQRCLQCLSTEDNKFIFDAATK-FCTEIATHRHGCCVLQKCIAYSMRQQREK-LIAEI 518
Query: 640 AAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIEL 699
+ + +A G +Q I I ++ ++ + L+ F +++V+ + +
Sbjct: 519 SRNSLL-LAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCL-M 576
Query: 700 KIPSVSANLLSQFKG--HYVHLSTQKFSSHVVEKCLKHF-GESRSQIVHELLSVPHFEQL 756
P ++ + H+ L +++ V++ L G + +V E++ PH L
Sbjct: 577 HCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLV-EVIR-PH-SIL 633
Query: 757 LQDPFANYV 765
+P+ +
Sbjct: 634 RNNPYCKRI 642
Score = 82 (33.9 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
Identities = 50/191 (26%), Positives = 74/191 (38%)
Query: 104 CFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVND 163
C ED +SPFS P +N + N T + F+ + + K + + +VN
Sbjct: 57 CSPEDSSSPFSSPP---FNGIIPKHNH--TSSSPVS--FDSLFF--KDHE----KSHVNG 103
Query: 164 ALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDA---------- 213
D GLCE+LYRMNI EE A+ + L P FT D
Sbjct: 104 TDDL--GLCEDLYRMNIKEDVEEDQIRYARTETLKDPLPKSDHTDFTPDPLYNFSPKHYE 161
Query: 214 -SLGGSV--GVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQY 270
S GG V G PY + +N + + G S +D+++++ Q+
Sbjct: 162 PSNGGFVSGGFPYGFFRPPKESSINQSCASWSGFDQSK-------NDDKRNMFGNNPQQF 214
Query: 271 GEGDLKESNFG 281
G SN G
Sbjct: 215 GWPSYSSSNSG 225
Score = 42 (19.8 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 209 FTSDASLGGSVGVPYNVEKYS--VFDGLNNVVSDYQGLSSSHTAVSKSFDD 257
F +S+ S P +S +F+G +V + + SSS ++S SF +
Sbjct: 4 FREASSVSSSPSTPLRTPLHSPNLFNGDFSVSNRFSFKSSSDYSLSSSFSN 54
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 1171 (417.3 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 214/320 (66%), Positives = 272/320 (85%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
++ +GY+Y MAKDQ+GCRFLQ +F++G+ LD +IF EVI H+VELMM+ FGNYL+QKLL
Sbjct: 197 SEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLL 256
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
+VC EEQ T+I+LMVT EPGQL+R+ LN YGTRVVQ+L+E++KTR+Q+SLVK+AL+PGFL
Sbjct: 257 DVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFL 316
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
+LI+DLNGNHV+QRCLQCLS EDNE ++F DA KFC+DIATH+HGCCVLQ+CIA+S G
Sbjct: 317 NLIRDLNGNHVIQRCLQCLSTEDNE-FIFEDAT-KFCIDIATHRHGCCVLQKCIAYSSGL 374
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
R+KL+TEIS+N LAQDP+GNY VQ+++EL+ S A +L+Q KGHYV LS QKFSSH
Sbjct: 375 QREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSH 434
Query: 728 VVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARR 787
+VE+CL H ESR QIV EL+SVPHF+ L+QDP+AN+VIQ AL+VTKG LHA+L+E R
Sbjct: 435 MVERCLTHCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRP 494
Query: 788 HTNLRTSPYCKRIFSRNISK 807
H+ LR +PYCKRIFSRN+ K
Sbjct: 495 HSILRNNPYCKRIFSRNLLK 514
Score = 52 (23.4 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 168 ETGLCENLYRMNIGGVGE-EHLDHSAKLKRLDIVDPLGVRF--GF---TSDASLGGS--V 219
+ GLCE+ +N+G + H + + G R+ GF D + S +
Sbjct: 97 DLGLCESFDLLNVGEEDKTHHQTQRSSFGNYEANGDGGFRYYSGFGVDQKDHQISNSWNL 156
Query: 220 GVPY-NVEKYSV-FDGLNNV--VSDYQGLSSS 247
G+ N+ YSV G + V + D+QG+SS+
Sbjct: 157 GMQSCNMNNYSVPVHGKSGVGALFDHQGISSN 188
Score = 41 (19.5 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 22/87 (25%), Positives = 33/87 (37%)
Query: 104 CFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVND 163
C SED +S F+ P D + KY G C + L + D H+ +
Sbjct: 70 CSSEDGSSQFASPPL----DGL--MTKYNFGGDDLGLCESFDLLNVGEEDKTHHQTQRSS 123
Query: 164 ALDYETGLCENLYRMNIGGVGEEHLDH 190
+YE + +R G G + DH
Sbjct: 124 FGNYEAN-GDGGFRY-YSGFGVDQKDH 148
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 1031 (368.0 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 194/320 (60%), Positives = 254/320 (79%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D G +Y MAKDQ GCR LQ+ DEG F+D+ IIF EVI++++EL + FGNYL+QKL+
Sbjct: 241 DSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIE 300
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
VC EEQ T+IL+ +T +PG LV++ +N YGTRVVQKLIET+ T++Q+SLVK+AL PGFL
Sbjct: 301 VCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLS 360
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L ++LNGNHV+ CL+ S DN+ L +AA KFC++IAT +HGCCVLQRC+++S+G
Sbjct: 361 LFRELNGNHVILNCLKFFSPNDNKFIL--EAATKFCIEIATTRHGCCVLQRCVSYSVGEQ 418
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
+KL+ EIS+N LAQDPFGNY+VQYIIE K+ V N+L + +G+YV L+TQKF SHV
Sbjct: 419 HEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLATQKFGSHV 476
Query: 729 VEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH 788
VEKCL+++ ESRSQIV+EL+SV +F LLQDP+ANYVIQCALS TKG + ASL+E RR+
Sbjct: 477 VEKCLRYYPESRSQIVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVRRY 536
Query: 789 TNLRTSPYCKRIFSRNISKK 808
NL+ +PYCKRIFS+N+ KK
Sbjct: 537 ENLKMTPYCKRIFSKNLWKK 556
Score = 50 (22.7 bits), Expect = 2.7e-107, Sum P(2) = 2.7e-107
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 168 ETGLCENLYRMNIGGVGEEHLDHSA 192
+ GLC+NL +M+I +HS+
Sbjct: 62 DMGLCQNLSKMSISDERSNFFNHSS 86
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 191/320 (59%), Positives = 251/320 (78%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G + MAKDQ GCR LQ++ +EGTF + ++I +IDH+VEL M+ FGNY+VQKL +
Sbjct: 249 EIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFD 308
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
V EEQ T I+ ++T P +L+R+CLNTYGTRVVQK+IET+KT+QQ++LVK+ LKPGFL
Sbjct: 309 VSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLA 368
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L+KDLNGNHV+Q CLQ L DNE L +AA K+C +IA H+HGCCVLQ CI++S+G
Sbjct: 369 LVKDLNGNHVIQSCLQTLGPNDNEFVL--EAATKYCAEIAIHRHGCCVLQCCISNSVGLQ 426
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
R++L+ EIS+N HL+QDPFGNYVVQY+I+ ++ +V LL QF+ HY L+TQKFSSHV
Sbjct: 427 RERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVK--LLVQFRMHYAELATQKFSSHV 484
Query: 729 VEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH 788
+EKCL+ + ESR++IV ELL VP+FE LLQDP+ANYVIQ ALSVTKGP+ A L+ R+
Sbjct: 485 IEKCLRKYPESRAEIVRELLCVPNFEYLLQDPYANYVIQTALSVTKGPVRAKLVAKVYRY 544
Query: 789 TNLRTSPYCKRIFSRNISKK 808
L +SPYCK+IFS+ I KK
Sbjct: 545 GKLHSSPYCKKIFSKTILKK 564
Score = 148 (57.2 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 54/253 (21%), Positives = 115/253 (45%)
Query: 559 LLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHV 618
L+ + E G + + + G RV+QKL+E T + ++ A+ ++L D GN++
Sbjct: 244 LVSMVEIYGSVNLMAKDQIGCRVLQKLVEE-GTFHEAKVILLAIIDHVVELSMDPFGNYI 302
Query: 619 LQRCLQCLSNEDNEVYLF--FDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEI 676
+Q+ +S+E+ + + + + I + +G V+Q+ I + + L+
Sbjct: 303 VQKLFD-VSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSG 361
Query: 677 SKNG-RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
K G L +D GN+V+Q ++ P+ + +L + ++ + V++ C+ +
Sbjct: 362 LKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISN 421
Query: 736 -FGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTS 794
G R ++V E+ + L QDPF NYV+Q + + L++ + L T
Sbjct: 422 SVGLQRERLVAEISR--NSLHLSQDPFGNYVVQYLIDQQVSAVKL-LVQFRMHYAELATQ 478
Query: 795 PYCKRIFSRNISK 807
+ + + + K
Sbjct: 479 KFSSHVIEKCLRK 491
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
Identities = 194/420 (46%), Positives = 283/420 (67%)
Query: 392 VSESFMPVNGAGAIEGFGCEDSFIIQ--GRSINQAAS-KGRDSLKGYKQNNLNEIVTRNQ 448
+ +SF P NG + F F++ I ++ +G D+ KG + + E + +Q
Sbjct: 127 LQDSFNP-NGFEEMMAFKDHKDFLLDHINEPIKRSPFLRGNDAFKG---SLMFEGIRVSQ 182
Query: 449 PVKICKHDGCAYDGVICDNGQSLMDIRCPLHXXXXXXXXADVRGYIYSMAKDQNGCRFLQ 508
+ + G +Y NG +D+ ++ G + MA+DQ GCR LQ
Sbjct: 183 ILAAMEGSGASYPDEPKINGGLPLDL----------VSMVEIYGSVNLMARDQIGCRALQ 232
Query: 509 RVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQ 568
++ +EGT LD ++IF E+IDH+VEL M+ GNY+VQKLL V EEQ T I+ ++T +P +
Sbjct: 233 KLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRE 292
Query: 569 LVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSN 628
L+++CLNT GTRV+QK+I+T+KT+QQ++LVK+AL+PGFL L+ D NG HVLQ CL+ L
Sbjct: 293 LIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVP 352
Query: 629 EDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPF 688
DN+ + +AA ++C +ATHQ+GC VLQ + +++G ++L+ EIS++ L+QDPF
Sbjct: 353 NDNKFVV--EAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLSQDPF 410
Query: 689 GNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELL 748
GNYVVQ +I+ ++ SV NLL F+ H + L+TQKFSSHV+EKCL+ + ESR++IV ELL
Sbjct: 411 GNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLRKYPESRAEIVRELL 468
Query: 749 SVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK 808
S P+FEQLLQDP+ANYVIQ ALSVTKG + A L+E +R L+++PYCK+IFS+ I KK
Sbjct: 469 SYPNFEQLLQDPYANYVIQTALSVTKGAVRARLVEKVKRFGKLQSNPYCKKIFSKTILKK 528
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 158/323 (48%), Positives = 235/323 (72%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
A+ RG IY +AKDQ+GCRFLQR+F E D+++IF+E+ID+I ELMM+ FGNYLVQKLL
Sbjct: 276 AEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLL 335
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
VC E+Q +I+ +T +PG L+++ + +GTR VQK++ET K +++S++ +ALK G +
Sbjct: 336 EVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIV 395
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
LIK++NGNHV+QRCLQ L + +LF +AA CV++AT +HGCCVLQ+C+ +S G
Sbjct: 396 HLIKNVNGNHVVQRCLQYLLPYCGK-FLF-EAAITHCVELATDRHGCCVLQKCLGYSEGE 453
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
+ L++EI+ N L+QDPFGNYV+QY+ EL++ + +L Q +G+Y LS QK SS+
Sbjct: 454 QKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSN 513
Query: 728 VVEKCLKHFGES-RSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAAR 786
VVEKCLK + R++I+ EL++ +Q++ DP+ NYVIQ AL +KG +HA L++A +
Sbjct: 514 VVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIK 573
Query: 787 RH-TNLRTSPYCKRIFSRNISKK 808
+ ++LRT+PY K++ S SKK
Sbjct: 574 LNISSLRTNPYGKKVLSALSSKK 596
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 724 (259.9 bits), Expect = 3.3e-76, Sum P(3) = 3.3e-76
Identities = 147/324 (45%), Positives = 213/324 (65%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
V G IY + +DQ+GCRFLQ+ +E +IIF EV D+++ELM + FGNYL QKLL
Sbjct: 712 VMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLLEH 771
Query: 550 CTEEQMTRILLMVTEEPG-QLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q L + E+ G +VR+ +N +GTR VQK+IE L T +Q+ L+K +LK +
Sbjct: 772 CNDRQR----LTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVP 827
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAK--FCVDIATHQHGCCVLQRCIAHSIG 666
LI+DLNGNHV+Q+CL LS +DN+ +DA + C+ +ATH+HGCCVLQRCI H+
Sbjct: 828 LIQDLNGNHVIQKCLNKLSPQDNQ--FIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASE 885
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
+ +LI E+ N L QDP+GNYVVQY+++L ++ + +F GH L+TQKFSS
Sbjct: 886 SQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSS 945
Query: 727 HVVEKCLKHFGES--RSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEA 784
+VVEKCL H ++ R ++ E++ + LLQDP+ANYVIQ +L++++ H L+EA
Sbjct: 946 NVVEKCL-HVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEA 1004
Query: 785 ARRHTNL-RTSPYCKRIFSRNISK 807
R H L + +PY KRI ++ I +
Sbjct: 1005 IRPHLPLLKNTPYGKRIQNKIIKE 1028
Score = 43 (20.2 bits), Expect = 3.3e-76, Sum P(3) = 3.3e-76
Identities = 7/43 (16%), Positives = 30/43 (69%)
Query: 12 QKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSL 54
Q YQ++ +Q+ ++++++++++ ++++ + ++L + Q + L
Sbjct: 188 QAYQQQ-QQQLLQQQQQLLQQQQQQQQLQQQQLLQQQLQQRQL 229
Score = 38 (18.4 bits), Expect = 3.3e-76, Sum P(3) = 3.3e-76
Identities = 23/107 (21%), Positives = 42/107 (39%)
Query: 297 SSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIG--VMN 354
SS H QQ+ +Q + N W S + +ND + S+ D+ +N
Sbjct: 260 SSHHHHQQQQQQQQQQQNGNNDLWAVQ-SELYSLKMNDG--KPDDYIVKSSFDVAFSTVN 316
Query: 355 HLF------SSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSES 395
F S+ L ++ S+ L+ + + + N+ NN S +
Sbjct: 317 QFFDEPRSNSNSLPRSTSNSSLNQI-FEPQLRNSNINSNNNNNNSNN 362
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 137/315 (43%), Positives = 198/315 (62%)
Query: 491 RGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVC 550
R IY + KDQ+GCR+LQR +E LQ+IF E H++ELM + FGNYL QKLL
Sbjct: 238 RNEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYS 297
Query: 551 TEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLI 610
+EQ T ++V + QLV++ LN +GTR +QK+IE + T +Q V ALK ++L+
Sbjct: 298 NDEQRT---VLVNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELV 354
Query: 611 KDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRD 670
+DLNGNHV+Q+CL L+ E ++ +DA CV + TH+HGCCVLQRCI H+ G R
Sbjct: 355 QDLNGNHVIQKCLNRLTAEKSQ--FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRA 412
Query: 671 KLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVE 730
+LI +I++N L QDPFGNYVVQYI++L + L +F LS KFSS+V+E
Sbjct: 413 RLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIE 472
Query: 731 KCLKHFGES-RSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHT 789
KCL+ E R Q++ E+L+ E++L+D +ANYV+Q A+ A +++
Sbjct: 473 KCLRTADEEMRRQMIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRARIVKYIEPIL 532
Query: 790 -NLRTSPYCKRIFSR 803
+LR +P+ +RI S+
Sbjct: 533 PSLRGTPHGRRIGSK 547
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 122/313 (38%), Positives = 190/313 (60%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEE 553
I S KDQ+GCR+LQR+ ++ + +F E ++ LM++ FGNYL QKL +E
Sbjct: 348 ILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEA 407
Query: 554 QMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDL 613
Q + + ++ P +LV + N +GTR +QK+I+ + + Q+S + AL+P + L KDL
Sbjct: 408 QRSTFIQIIA--P-KLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDL 464
Query: 614 NGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLI 673
NGNHV+Q+CL S ED + FDA + +D++TH+HGCCV+QRC H+ ++L+
Sbjct: 465 NGNHVIQKCLNKFSQEDCQ--FIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV 522
Query: 674 TEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCL 733
I + L QD FGNYV+QY++EL P+ + ++S F LSTQKFSS+V+EKC+
Sbjct: 523 EHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCI 582
Query: 734 KHFGES--RSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHT-N 790
F + + +++ EL+ H +LL+D FANYVIQ AL A L+E + +
Sbjct: 583 -FFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPS 641
Query: 791 LRTSPYCKRIFSR 803
++ +P +RI S+
Sbjct: 642 IKNTPCGRRILSK 654
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 529 (191.3 bits), Expect = 7.1e-53, Sum P(3) = 7.1e-53
Identities = 109/282 (38%), Positives = 174/282 (61%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCT 551
G++ ++ KDQ GCR+LQ++ DE ++ + F E+ +V+LM++ FGNY+ QKL +
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 552 EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIK 611
EQ +L + E G +V +C N YGTR +Q +I+ L + +Q+SL+ + P L
Sbjct: 525 REQKLSMLNGIGE--G-IVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC 581
Query: 612 DLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK 671
D NG HVLQ+C+ E E LF + +AT++HGCC+LQRC+ + G +++
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEP-LFLSMEENL-ITLATNRHGCCILQRCLDRTNGDIQER 639
Query: 672 LITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731
L+ I K+ L Q+ +GNY+VQ+++EL I + ++ +F G+ LS QKFSS+ +E+
Sbjct: 640 LVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQ 699
Query: 732 CLKHFGES-RSQIVHELLSVPHFEQLLQDPFANYVIQCALSV 772
C++ S R Q++ E LS P+ EQLL D +ANYV+Q L+V
Sbjct: 700 CIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNV 741
Score = 145 (56.1 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 51/219 (23%), Positives = 99/219 (45%)
Query: 567 GQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCL 626
G L +C + YG R +QKL++ + SL ++ + L+ D GN++ Q+
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDE-NPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYA 523
Query: 627 SNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEIS-KNGRHLAQ 685
S E L + + VDI ++ +G +Q I + L+ +I + LA
Sbjct: 524 SREQKLSML--NGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC 581
Query: 686 DPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF-GESRSQIV 744
D G +V+Q I P L + + + L+T + ++++CL G+ + ++V
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLV 641
Query: 745 HELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIE 783
+ ++ L+Q+ + NY++Q L + P +IE
Sbjct: 642 NSIIKSCLL--LVQNAYGNYLVQHVLELNIQPYTERIIE 678
Score = 130 (50.8 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 47/243 (19%), Positives = 105/243 (43%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLD-LQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTE 552
I + + G R +Q + D+ T + + ++ +I + L + G +++QK +
Sbjct: 539 IVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIAKFPP 598
Query: 553 EQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKD 612
E++ + L + E L+ + N +G ++Q+ ++ Q LV + +K L L+++
Sbjct: 599 EKLEPLFLSMEEN---LITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLL-LVQN 654
Query: 613 LNGNHVLQRCLQCLSNEDNE--VYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRD 670
GN+++Q L+ E + FF K ++ + +++CI + R+
Sbjct: 655 AYGNYLVQHVLELNIQPYTERIIEKFFGNICK----LSLQKFSSNAIEQCIRTASPSTRE 710
Query: 671 KLITEISK--NGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
+++ E N L D + NYV+Q + + S +L + + H+
Sbjct: 711 QMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNTRHGRHI 770
Query: 729 VEK 731
+ K
Sbjct: 771 LAK 773
Score = 128 (50.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 42/208 (20%), Positives = 92/208 (44%)
Query: 527 IDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLI 586
+ H+ + +Q+G +QKLL+ E L E +V++ ++ +G + QKL
Sbjct: 464 LGHLSTICKDQYGCRYLQKLLD---ENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLF 520
Query: 587 ETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVD 646
Q++S++ + G +D+ +L G +Q + L++ + ++ L
Sbjct: 521 VYASREQKLSMLNG-IGEGIVDICSNLYGTRSMQNIIDKLTSNE-QISLLLKIIIPSLTT 578
Query: 647 IATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSA 706
+A +G VLQ+CIA + L + +N LA + G ++Q ++ +
Sbjct: 579 LACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQE 638
Query: 707 NLLSQFKGHYVHLSTQKFSSHVVEKCLK 734
L++ + L + +++V+ L+
Sbjct: 639 RLVNSIIKSCLLLVQNAYGNYLVQHVLE 666
Score = 58 (25.5 bits), Expect = 7.1e-53, Sum P(3) = 7.1e-53
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 285 NHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGL 344
N+S DF S SSL Q + S+ L +PSRI Y + + L
Sbjct: 269 NYSTDFTKIQSDSSLLQNRQQNHRIETDQLSHFPDHL-DPSRIPSPYQPSSLQPLESRKL 327
Query: 345 DSNRDIGV--MNHLFS-SQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSES 395
S D+ +N L + ++++E+ L D + SM TN T NR +++
Sbjct: 328 HSKVDVHSKKLNALSQLNPILRSENVLQNDNHHSSLSMDNDPTNVSTKNRNNQT 381
Score = 45 (20.9 bits), Expect = 7.1e-53, Sum P(3) = 7.1e-53
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 209 FTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
F+ S SV + E + + G+N V +Y + S +A+S S
Sbjct: 97 FSKTKSFPSSVTYSPSEETFPLTSGMNKSVHEYP-FTLSESAISSS 141
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 556 (200.8 bits), Expect = 5.0e-52, P = 5.0e-52
Identities = 136/321 (42%), Positives = 183/321 (57%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCT 551
G I+S+ KDQ+GCRFLQ+ D IF+E D+ VELM + FGNYL+QKLL T
Sbjct: 566 GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVT 625
Query: 552 EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIK 611
EQ RI+L P V + LN +GTR +QKLIE +KT ++ +V +L+P + L K
Sbjct: 626 TEQ--RIVLTKISSP-HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 682
Query: 612 DLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK 671
DLNGNHV+Q+CLQ L E+ + FDA + C+DIATH+HGCCVLQRC+ H D
Sbjct: 683 DLNGNHVIQKCLQRLKPENFQ--FIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDN 740
Query: 672 LITEISKNGRHLAQDPFGNYVVQYII----ELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
L ++ L DPFGNYVVQYII E + ++ K + LS KF S+
Sbjct: 741 LCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSN 800
Query: 728 VVEKCLKHFGESRSQIVHELLS---VPHFEQLLQDPFANYVIQCALSVTKGP---LHASL 781
V+EK LK S I+ E+L+ + LL D + NYV+Q AL ++ L+ L
Sbjct: 801 VIEKILKTAIVSEPMIL-EILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRL 859
Query: 782 IE--AARRHTNLRTSPYCKRI 800
E A +R +P+ KRI
Sbjct: 860 SEIVAPLLVGPIRNTPHGKRI 880
Score = 178 (67.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/275 (21%), Positives = 123/275 (44%)
Query: 496 SMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQM 555
S A + N +++ + F D + D+ I I L +Q G +QK L++ +
Sbjct: 536 SNATNSNSAEKQRKIEESSRFADA--VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAA 593
Query: 556 TRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNG 615
I E V + +++G ++QKL+E + T Q++ L K + P F+++ + +G
Sbjct: 594 DAIF---EETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS-SPHFVEISLNPHG 649
Query: 616 NHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITE 675
LQ+ ++C+ D E + D+ + V ++ +G V+Q+C+ + +
Sbjct: 650 TRALQKLIECIKT-DEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDA 708
Query: 676 ISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCL-K 734
IS + +A G V+Q ++ NL + L+ F ++VV+ + K
Sbjct: 709 ISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITK 768
Query: 735 HFGESRSQIVHELLSV--PHFEQLLQDPFANYVIQ 767
+++ H+++ + P +L F + VI+
Sbjct: 769 EAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIE 803
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 496 (179.7 bits), Expect = 6.4e-45, P = 6.4e-45
Identities = 120/344 (34%), Positives = 192/344 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D G I ++ KDQ+GCRFLQR T + +IF+E+ VELM++ FGNYL+QKL
Sbjct: 443 DFTGSILTLCKDQHGCRFLQRELINET--NATLIFNEIYFKAVELMIDPFGNYLIQKLFT 500
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L+++ + +L R+ L+ +GTR +QKLI+ ++T +++ ++ L +
Sbjct: 501 MINLEQR---LVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVV 557
Query: 609 LIKDLNGNHVLQRCLQCL-----------SNED-----NEVYLFFDAAAKFCVDIATHQH 652
L +DLNGNHV+Q+ L SN D N+ FD + IA H+H
Sbjct: 558 LSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRH 617
Query: 653 GCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYII-ELKIPSVSAN---- 707
GCCVLQRC+ + + +L EI+K+ L+ DP+GNYVVQY++ + + + N
Sbjct: 618 GCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQ 677
Query: 708 ----LLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPH---FEQLLQDP 760
++ + K +++ LS KF S+V+EKCLK S+ ++ L+ + H F QLL DP
Sbjct: 678 VIDIIIQEIKSNFIQLSLHKFGSNVIEKCLKISSISKD-LIDNLIVLDHGQAFNQLLNDP 736
Query: 761 FANYVIQCALSVTKGPLHASLIEAARRHT-NLRTSPYCKRIFSR 803
F NYV+Q +L V L + N++++P+ +RI ++
Sbjct: 737 FGNYVLQTSLDVANLEQFEQLSKILLPLLPNIKSTPHGRRILNK 780
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 474 (171.9 bits), Expect = 4.8e-42, P = 4.8e-42
Identities = 107/307 (34%), Positives = 171/307 (55%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGT-------FLDLQIIFDEVIDHIVELMMEQFGNYL 542
++ I +AKDQ GCRFLQ+ DE + +IIF+++ H+ EL+++ FGNYL
Sbjct: 282 LKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNYL 341
Query: 543 VQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL 602
+QKL+ C E + +L+ + + L ++ +N +GTR +QK+I++L Q+ L+ L
Sbjct: 342 IQKLIVYCNESNLD-LLMEILQY--NLFQISINQHGTRALQKIIDSLNNSHQLGLLIKGL 398
Query: 603 KPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIA 662
KP ++LIKDLNGNHV+Q+ L E + +D+ +ATH+HGCCVLQ+C+
Sbjct: 399 KPYIIELIKDLNGNHVIQKILN--KYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLN 456
Query: 663 HSIGRHRDKLITEISK--NGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV-HL 719
H + + I K N + L D FGNYV+QY+I + ++ + F + +L
Sbjct: 457 HVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFVNFGISNL 516
Query: 720 STQKFSSHVVEKCLKH----------FGESRSQIVHELLSVPHFEQLLQDPFANYVIQCA 769
KFSS+VVEK LK+ F + ++++ +L V L+ DP+ NYVIQ
Sbjct: 517 CNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIIL-VSDLNVLINDPYGNYVIQTM 575
Query: 770 LSVTKGP 776
+ + P
Sbjct: 576 IDIMVNP 582
Score = 183 (69.5 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 65/257 (25%), Positives = 113/257 (43%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLI-ETLKTRQQVSLVKAAL-----KPGFLDLIKDL 613
L +T+ +++++ + YG R +QK I E+L QV L + +LI D
Sbjct: 277 LPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDP 336
Query: 614 NGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR-DKL 672
GN+++Q+ + NE N + L + I+ +QHG LQ+ I H+ L
Sbjct: 337 FGNYLIQKLI-VYCNESN-LDLLMEILQYNLFQISINQHGTRALQKIIDSLNNSHQLGLL 394
Query: 673 ITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKC 732
I + L +D GN+V+Q I+ P + ++T K V++KC
Sbjct: 395 IKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKC 454
Query: 733 LKHFG-ESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNL 791
L H + + +L +F+ L+ D F NYV+Q +S+ ++ + + N
Sbjct: 455 LNHVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQ---NFVNF 511
Query: 792 RTSPYCKRIFSRNISKK 808
S C FS N+ +K
Sbjct: 512 GISNLCNLKFSSNVVEK 528
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 472 (171.2 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 101/322 (31%), Positives = 180/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 725 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 784
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ + QQ +VK L L
Sbjct: 785 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKE-LDGHVLK 840
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 841 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 898
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 899 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 958
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 959 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1018
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H T LR Y K I ++
Sbjct: 1019 HKIRPHITTLRKYTYGKHILAK 1040
Score = 243 (90.6 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 798 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE 856
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 857 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 912
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 913 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 970
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 971 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1030
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1031 YTYGKHILAKLEKYY 1045
Score = 46 (21.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G + SV ++ + + LS+S +S
Sbjct: 545 PGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 597
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 472 (171.2 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 101/322 (31%), Positives = 180/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 726 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 785
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ + QQ +VK L L
Sbjct: 786 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKE-LDGHVLK 841
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 842 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 899
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 900 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 959
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 960 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1019
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H T LR Y K I ++
Sbjct: 1020 HKIRPHITTLRKYTYGKHILAK 1041
Score = 243 (90.6 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 799 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE 857
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 858 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 913
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 914 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 971
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 972 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1031
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1032 YTYGKHILAKLEKYY 1046
Score = 46 (21.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G + SV ++ + + LS+S +S
Sbjct: 546 PGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 598
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 462 (167.7 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 397 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 456
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 457 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 512
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 513 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 570
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 571 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 630
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 631 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVM 690
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 691 HKIRPHIATLRKYTYGKHILAK 712
Score = 235 (87.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 62/254 (24%), Positives = 127/254 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 470 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 528
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 529 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 585
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 586 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 643
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 644 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKY 703
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 704 TYGKHILAKLEKYY 717
Score = 203 (76.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 393 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 451
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 452 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 509
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 510 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 569
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 570 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 625
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 626 --FASNVVEK 633
Score = 45 (20.9 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 217 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 268
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 269 TSSSLTPIGHSFYNG 283
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 465 (168.7 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 108/309 (34%), Positives = 175/309 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLD-LQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
++ G IY + K Q GCRFLQ+ +E + + +IF+EV DH+ ELM++ +G YL+ +L+
Sbjct: 470 EITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQLM 529
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
C Q +I+ + P C + YG +QKL++ L Q S++ A++K +
Sbjct: 530 KYCDNNQRRQIVDKIA--PSVETFAC-HVYGIHGIQKLLQYLSPDQVESII-ASIKGKVI 585
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
L KD GN+++Q L+ S E N+ DA +I TH+ GC V+ RCI ++
Sbjct: 586 QLSKDNKGNYLIQSFLKQFSPEVNQFVC--DAIMGNIEEICTHKVGCTVVNRCIDNANPE 643
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
+KL+ +I+++ L QD FGNYVVQ+++ K + S+ L+ K + LS QKFSS+
Sbjct: 644 QLEKLVDKITEHSLKLVQDQFGNYVVQHLLS-KNKAYSSKLIVSLKDNIAELSIQKFSSN 702
Query: 728 VVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARR 787
V+EKCL+ +++ + L+ LLQD +AN+VIQ AL V+ HA L++
Sbjct: 703 VIEKCLQLADTPTYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVP 762
Query: 788 HTNLRTSPY 796
+ + +PY
Sbjct: 763 YIHQIKTPY 771
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 472 (171.2 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 101/322 (31%), Positives = 180/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 670 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 729
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ + QQ +VK L L
Sbjct: 730 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKE-LDGHVLK 785
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 786 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 843
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 844 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 903
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 904 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 963
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H T LR Y K I ++
Sbjct: 964 HKIRPHITTLRKYTYGKHILAK 985
Score = 243 (90.6 bits), Expect = 9.6e-16, Sum P(2) = 9.6e-16
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 743 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE 801
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 802 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 857
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 858 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 915
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 916 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 975
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 976 YTYGKHILAKLEKYY 990
Score = 42 (19.8 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S SLG ++G + SV ++ + + LS+S +S
Sbjct: 490 PGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 542
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 470 (170.5 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 103/324 (31%), Positives = 181/324 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + QI+F+E++ +LM + FGNY++QK
Sbjct: 726 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 785
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ +Q L + T G ++ + L YG RV+QK +E++ + QQV +VK L
Sbjct: 786 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKE-LDGHV 841
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 842 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA 899
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S
Sbjct: 900 EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFAS 959
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + +
Sbjct: 960 NVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKI 1019
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H T LR Y K I ++
Sbjct: 1020 IMHKIRPHITTLRKYTYGKHILAK 1043
Score = 250 (93.1 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 66/257 (25%), Positives = 131/257 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEV--ID-HIVELMMEQFGNYLVQKL 546
+RG++ +A GCR +Q+ E D Q+I + V +D H+++ + +Q GN++VQK
Sbjct: 799 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKC 857
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
+ C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 858 IE-CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHT 913
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 914 EQLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASR 971
Query: 667 RHRDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHL 719
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 972 AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1031
Query: 720 STQKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1032 RKYTYGKHILAKLEKYY 1048
Score = 45 (20.9 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G + SV ++ + + LS+S +S
Sbjct: 546 PGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 598
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 468 (169.8 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
Identities = 100/322 (31%), Positives = 180/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 731 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 790
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ + QQ +VK L L
Sbjct: 791 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKE-LDGHVLK 846
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 847 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 904
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 905 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 964
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 965 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1024
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H + LR Y K I ++
Sbjct: 1025 HKIRPHISTLRKYTYGKHILAK 1046
Score = 241 (89.9 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 804 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE 862
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 863 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 918
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 919 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 976
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 977 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTLRK 1036
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1037 YTYGKHILAKLEKYY 1051
Score = 46 (21.3 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G + SV ++ + + LS+S +S
Sbjct: 551 PGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 603
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 465 (168.7 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
Identities = 101/324 (31%), Positives = 180/324 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 564 DLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKFFE 623
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ +Q L + G ++ + L YG RV+QK +E++ + QQV +VK L
Sbjct: 624 FGSLDQK---LALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKE-LDGHV 679
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 680 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA 737
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S
Sbjct: 738 EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFAS 797
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + +
Sbjct: 798 NVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKI 857
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H T LR Y K I ++
Sbjct: 858 IMHKIRPHITTLRKYTYGKHILAK 881
Score = 250 (93.1 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 66/257 (25%), Positives = 131/257 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEV--ID-HIVELMMEQFGNYLVQKL 546
+RG++ +A GCR +Q+ E D Q+I + V +D H+++ + +Q GN++VQK
Sbjct: 637 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKC 695
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
+ C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 696 IE-CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHT 751
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 752 EQLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASR 809
Query: 667 RHRDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHL 719
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 810 AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 869
Query: 720 STQKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 870 RKYTYGKHILAKLEKYY 886
Score = 201 (75.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 78/258 (30%), Positives = 130/258 (50%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIE--TLKTRQQV--SLVKAALKPGFLDLIKDLNG 615
L + + G +V + +G+R +Q+ +E T RQ V +V+AA + L+ D+ G
Sbjct: 560 LQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQ-----LMTDVFG 614
Query: 616 NHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITE 675
N+V+Q+ + + D ++ L + + +A +GC V+Q+ + SI + ++I+E
Sbjct: 615 NYVIQKFFE-FGSLDQKLALA-NRIRGHVLPLALQMYGCRVIQKAL-ESISSDQ-QVISE 670
Query: 676 ISK--NGRHL--AQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731
+ K +G L +D GN+VVQ IE P ++ FKG LST + V+++
Sbjct: 671 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 730
Query: 732 CLKHF-GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTN 790
L+H E I+ EL H EQL+QD + NYVIQ L + P S I + R
Sbjct: 731 ILEHCTAEQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVSEIRGKV 787
Query: 791 LRTSPYCKRIFSRNISKK 808
L S + K F+ N+ +K
Sbjct: 788 LALSQH-K--FASNVVEK 802
Score = 45 (20.9 bits), Expect = 4.7e-41, Sum P(2) = 4.7e-41
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G + SV ++ + + LS+S +S
Sbjct: 384 PGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 436
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 469 (170.2 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 101/322 (31%), Positives = 179/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 723 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 782
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ QQ +VK L L
Sbjct: 783 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKE-LDGHVLK 838
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 839 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 896
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 897 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 956
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 957 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1016
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H T LR Y K I ++
Sbjct: 1017 HKIRPHITTLRKYTYGKHILAK 1038
Score = 241 (89.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 796 IRGHVLPLALQMYGCRVIQKAL-ESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIE 854
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 855 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 910
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 911 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 968
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 969 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1028
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1029 YTYGKHILAKLEKYY 1043
Score = 43 (20.2 bits), Expect = 6.4e-41, Sum P(2) = 6.4e-41
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G SV ++ + LS+S +S
Sbjct: 543 PGSTSLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDLYKRS 595
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 469 (170.2 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 101/322 (31%), Positives = 179/322 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 724 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 783
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ +Q L + T G ++ + L YG RV+QK +E++ QQ +VK L L
Sbjct: 784 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKE-LDGHVLK 839
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 840 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ 897
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S+V
Sbjct: 898 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNV 957
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 958 VEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIM 1017
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H T LR Y K I ++
Sbjct: 1018 HKIRPHITTLRKYTYGKHILAK 1039
Score = 241 (89.9 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 64/255 (25%), Positives = 128/255 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
+RG++ +A GCR +Q+ E D Q + +D H+++ + +Q GN++VQK +
Sbjct: 797 IRGHVLPLALQMYGCRVIQKAL-ESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIE 855
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 856 -CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHTEQ 911
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 912 LVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASRAE 969
Query: 669 RDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 970 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1029
Query: 722 QKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1030 YTYGKHILAKLEKYY 1044
Score = 43 (20.2 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S +SLG ++G SV ++ + LS+S +S
Sbjct: 544 PGSTSLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDLYKRS 596
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 440 (159.9 bits), Expect = 9.0e-41, P = 9.0e-41
Identities = 108/295 (36%), Positives = 163/295 (55%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+R + S AKD LQ V +G + IFD +I H+ ELM++ +G+ + +KL+
Sbjct: 151 IRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEK 210
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
CT+EQ+TR+L +V EEP + VR+C++T+GT +Q L+ +L + +Q+S L L L
Sbjct: 211 CTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLL 270
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
KD+ + V+ C S YL + + C +A Q+GCC+L++ I S R
Sbjct: 271 TKDVIAHRVILFCFNQFSPSHTR-YLL-EVIVQNCYQVAIDQNGCCMLKKLIRQSSRELR 328
Query: 670 DKLITEISKNGRHLAQDPFG----------NYVVQYIIELKIPSVSANLLSQFKGHYVHL 719
D LI EI L + +G NYVVQY++ LK V++ L G+YV L
Sbjct: 329 DPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQL 388
Query: 720 STQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTK 774
S K+ SHVV+KCL+ S +I+ ELLS + LL DP+ +YVIQ A V++
Sbjct: 389 SYDKYGSHVVQKCLESREFSSRRIIAELLS--DIDSLLVDPYGDYVIQTAWIVSE 441
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 466 (169.1 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 606 EIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 665
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 666 FGSHEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 721
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 722 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 779
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 780 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 839
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 840 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 899
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 900 HKIRPHIATLRKYTYGKHILAK 921
Score = 234 (87.4 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 62/254 (24%), Positives = 126/254 (49%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 737
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 738 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 794
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 795 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 852
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P ++ + + H L
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 912
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 913 TYGKHILAKLEKYY 926
Score = 208 (78.3 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 66/250 (26%), Positives = 118/250 (47%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 602 LQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY-QLMVDVFGNYVI 660
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S+E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 661 QKFFEFGSHEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 718
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 719 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 778
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 779 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 834
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 835 --FASNVVEK 842
Score = 42 (19.8 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 202 PLGVRFGFTSDASLGGSVG 220
P GF S +SLG ++G
Sbjct: 426 PANTSLGFGSSSSLGATLG 444
Score = 39 (18.8 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 216 GGSVGVPYNVEKYSVFDGLNNVVSDYQ 242
GGS G YN K+ G +N+ +++Q
Sbjct: 96 GGSGGGGYNTSKHRWPTG-DNIHAEHQ 121
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 467 (169.5 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 102/324 (31%), Positives = 181/324 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+I ++DQ+G RF+Q+ + T + Q++F+E++ +LM + FGNY++QK
Sbjct: 726 DLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFE 785
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ +Q L + T G ++ + L YG RV+QK +E++ + QQV +VK L
Sbjct: 786 FGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKE-LDGHV 841
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 842 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA 899
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++S+ +G + LS KF+S
Sbjct: 900 EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFAS 959
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + +
Sbjct: 960 NVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKI 1019
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H T LR Y K I ++
Sbjct: 1020 IMHKIRPHITTLRKYTYGKHILAK 1043
Score = 250 (93.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 66/257 (25%), Positives = 131/257 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEV--ID-HIVELMMEQFGNYLVQKL 546
+RG++ +A GCR +Q+ E D Q+I + V +D H+++ + +Q GN++VQK
Sbjct: 799 IRGHVLPLALQMYGCRVIQKAL-ESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKC 857
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
+ C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 858 IE-CVQPQSLQFIIDAFK--GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEE-LHQHT 913
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L++D GN+V+Q L+ ED + + K ++ H+ V+++C+ H+
Sbjct: 914 EQLVQDQYGNYVIQHVLEHGRPEDKSK-IVSEIRGKVLA-LSQHKFASNVVEKCVTHASR 971
Query: 667 RHRDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHL 719
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 972 AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTL 1031
Query: 720 STQKFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1032 RKYTYGKHILAKLEKYY 1048
Score = 42 (19.8 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKS 254
P GF S SLG ++G + SV ++ + + LS+S +S
Sbjct: 546 PGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLSTSSDLYKRS 598
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 461 (167.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 787 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 846
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 847 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 902
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 903 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 960
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 961 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1020
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 1021 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1080
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 1081 HKIRPHIATLRKYTYGKHILAK 1102
Score = 234 (87.4 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 62/254 (24%), Positives = 126/254 (49%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 860 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 918
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 919 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 975
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 976 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 1033
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P ++ + + H L
Sbjct: 1034 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1093
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1094 TYGKHILAKLEKYY 1107
Score = 203 (76.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 783 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 841
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 842 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 899
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 900 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 959
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 960 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 1015
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 1016 --FASNVVEK 1023
Score = 49 (22.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 24/96 (25%), Positives = 37/96 (38%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNN----VVSDYQGLSSSHTAVSK--SF 255
P GF S +SLG ++G + GL N +S G + + + S S
Sbjct: 686 PANTSLGFGSSSSLGATLGSALG--GFGTAGGLTNGSGRYISAAPGAEAKYRSASSASSL 743
Query: 256 DDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFR 291
+L ++ +YG D+ S L DFR
Sbjct: 744 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLE---DFR 776
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 461 (167.3 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 606 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 665
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 666 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 721
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 722 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 779
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 780 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 839
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 840 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 899
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 900 HKIRPHIATLRKYTYGKHILAK 921
Score = 234 (87.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 62/254 (24%), Positives = 126/254 (49%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 737
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 738 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 794
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 795 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 852
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P ++ + + H L
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 912
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 913 TYGKHILAKLEKYY 926
Score = 203 (76.5 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 602 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 660
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 661 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 718
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 719 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 778
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 779 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 834
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 835 --FASNVVEK 842
Score = 45 (20.9 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 426 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 477
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 478 TSSSLTPIGHSFYNG 492
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 414 (150.8 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 105/337 (31%), Positives = 175/337 (51%)
Query: 476 CPLHXXXXXXXXADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMM 535
C + + RG +S+A D+ + L++ GT + +IFD +I I ELM+
Sbjct: 195 CTYNQDQAASSMENGRGSYFSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMV 254
Query: 536 EQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTR--Q 593
+ FGN +V+ L+ C+ EQ+ I+ +VT + V +C N GT +Q L+ ++ R
Sbjct: 255 DPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANN 314
Query: 594 QVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHG 653
Q+ + A+ L L ++ N +V+ C + ++ ++ + ++ C IA Q+G
Sbjct: 315 QIPRIMDAISSVALQLTRNTNAKYVILACFRMFTS--SQCRRLLEVVSQHCYQIAIDQNG 372
Query: 654 CCVLQRCI-AHSIGRH--RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLS 710
CC+LQ+C + H R +LI+E+ ++ L + GNYVVQY++EL + L++
Sbjct: 373 CCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVN 432
Query: 711 QFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCAL 770
+ +Y HL+ K+ SHVV+K LK G IV +LL + LL DPF NYVIQ A
Sbjct: 433 KLLRNYAHLARNKYGSHVVQKLLKLRGIDSKLIVVDLLR--GIDTLLLDPFGNYVIQTAW 490
Query: 771 SVTKGPLHASLIEAARRHTNL-RTSPYCKRIFSR-NI 805
V+K + L R+ L R + + +I + NI
Sbjct: 491 FVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKLNI 527
Score = 45 (20.9 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 122 NDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGL-CENLYRMNI 180
ND V + +Y T GG N L + C R NV+D G N +R N
Sbjct: 138 NDYVNQSYRYDTIGGGNGMLNNSFL----NGVPCASRNNVSDYYTNIFGYGVNNSWRSNE 193
Query: 181 G 181
G
Sbjct: 194 G 194
Score = 45 (20.9 bits), Expect = 3.5e-40, Sum P(2) = 3.5e-40
Identities = 30/130 (23%), Positives = 55/130 (42%)
Query: 231 FDGLNNVVSDYQGLSSSHTAVSKSFDD-----ERKSLLTAFGGQYGEGDLKESNFGLCLN 285
FD L + S ++GLS + + V ++ + + + GG YG+G L +
Sbjct: 61 FD-LQTLESSFRGLSFADSNVHQNGNPILPAHQYNQVFNGGGGSYGDGYLFPPSGSYHHY 119
Query: 286 HSNDF-RFGPSYSSLRHQ--YLQQ--RMEQ---GRSWSNAGTWLQNPSRISRSYVNDAFV 337
D RF + L +Q Y+ Q R + G N ++L SR+ V+D +
Sbjct: 120 ELKDLQRFNQNQQRLSYQNDYVNQSYRYDTIGGGNGMLN-NSFLNGVPCASRNNVSDYYT 178
Query: 338 GAQQLGLDSN 347
G++++
Sbjct: 179 NIFGYGVNNS 188
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 457 (165.9 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 560 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 619
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 620 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 675
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 676 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 733
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 734 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 793
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 794 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 853
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 854 VMHKIRPHIATLRKYTYGKHILAK 877
Score = 242 (90.2 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 633 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 689
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 690 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 745
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 746 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 803
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 804 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 863
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 864 TLRKYTYGKHILAKLEKYY 882
Score = 192 (72.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 556 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 614
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 615 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 672
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 673 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 732
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 733 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 789
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 790 -K--FASNVVEK 798
Score = 45 (20.9 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 380 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 431
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 432 TSSSLTPIGHSFYNG 446
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 462 (167.7 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 848 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 907
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 908 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 963
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 964 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVM 1141
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 1142 HKIRPHIATLRKYTYGKHILAK 1163
Score = 235 (87.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 62/254 (24%), Positives = 127/254 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 979
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 980 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 1036
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 1037 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 1094
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKY 1154
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1155 TYGKHILAKLEKYY 1168
Score = 203 (76.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 844 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 902
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 903 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 960
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 961 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1020
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 1021 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 1076
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 1077 --FASNVVEK 1084
Score = 45 (20.9 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 668 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 719
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 720 TSSSLTPIGHSFYNG 734
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 461 (167.3 bits), Expect = 4.5e-40, Sum P(2) = 4.5e-40
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 789 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 848
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 849 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 904
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 905 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 962
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 963 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1022
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 1023 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1082
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 1083 HKIRPHIATLRKYTYGKHILAK 1104
Score = 234 (87.4 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 62/254 (24%), Positives = 126/254 (49%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 862 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 920
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 921 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 977
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 978 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 1035
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P ++ + + H L
Sbjct: 1036 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1095
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1096 TYGKHILAKLEKYY 1109
Score = 203 (76.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 785 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 843
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 844 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 901
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 902 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 961
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 962 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 1017
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 1018 --FASNVVEK 1025
Score = 45 (20.9 bits), Expect = 4.5e-40, Sum P(2) = 4.5e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 609 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 660
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 661 TSSSLTPIGHSFYNG 675
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 461 (167.3 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 98/322 (30%), Positives = 181/322 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 848 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 907
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ EQ L + G ++ + L YG RV+QK +E + + QQ +V+ L L
Sbjct: 908 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHVLK 963
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 964 CVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S+V
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V + ++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVM 1141
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 1142 HKIRPHIATLRKYTYGKHILAK 1163
Score = 234 (87.4 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 62/254 (24%), Positives = 126/254 (49%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG++ S+A GCR +Q+ + + E+ H+++ + +Q GN++VQK +
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 979
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L L
Sbjct: 980 CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQL 1036
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R
Sbjct: 1037 VQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTER 1094
Query: 670 DKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
LI E+ +G H A +D + NYVVQ +I++ P ++ + + H L
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1154
Query: 723 KFSSHVVEKCLKHF 736
+ H++ K K++
Sbjct: 1155 TYGKHILAKLEKYY 1168
Score = 203 (76.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 66/250 (26%), Positives = 117/250 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 844 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 902
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + S E + + +A +GC V+Q+ + +++++ E+ +
Sbjct: 903 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGH 960
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-FGE 738
+D GN+VVQ IE P ++ FKG LST + V+++ L+H +
Sbjct: 961 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1020
Query: 739 SRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCK 798
I+ EL H EQL+QD + NYVIQ L + P S I A R L S + K
Sbjct: 1021 QTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH-K 1076
Query: 799 RIFSRNISKK 808
F+ N+ +K
Sbjct: 1077 --FASNVVEK 1084
Score = 45 (20.9 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 668 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 719
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 720 TSSSLTPIGHSFYNG 734
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 462 (167.7 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 849 EIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 908
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 909 FGSHEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 964
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 965 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1022
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1023 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1082
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1083 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 1142
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1143 VMHKIRPHIATLRKYTYGKHILAK 1166
Score = 242 (90.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 978
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 979 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1034
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1035 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1092
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 1093 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1152
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1153 TLRKYTYGKHILAKLEKYY 1171
Score = 197 (74.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 66/252 (26%), Positives = 118/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 845 LQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY-QLMVDVFGNYVI 903
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S+E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 904 QKFFEFGSHEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 961
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 962 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1021
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1022 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1078
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1079 -K--FASNVVEK 1087
Score = 43 (20.2 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 26/105 (24%), Positives = 45/105 (42%)
Query: 216 GGSVGVPYNVEKYSVFDGLNNVVSDYQGLSS---SHTAVSKSFDDERKSLLTAFGGQYGE 272
GGS G YN K+ G +N+ +++Q S +H + + + G ++ E
Sbjct: 96 GGSGGGGYNTSKHRWPTG-DNIHAEHQVRSMDELNHDFQALALEGRAMGEQLLPGKKFWE 154
Query: 273 GD--LKESNFGLCLNHS-NDFRFGPSYSSLRHQYLQQRMEQGRSW 314
D K+ G+ L D +G S S+ + QR G+S+
Sbjct: 155 TDESSKDGPKGIFLGDQWRDSAWGTSDHSVSQPIMVQR-RPGQSF 198
Score = 42 (19.8 bits), Expect = 8.8e-40, Sum P(2) = 8.8e-40
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 202 PLGVRFGFTSDASLGGSVG 220
P GF S +SLG ++G
Sbjct: 669 PANTSLGFGSSSSLGATLG 687
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 460 (167.0 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 99/324 (30%), Positives = 181/324 (55%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 849 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 908
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + QQV +V+ L
Sbjct: 909 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRE-LDGHV 964
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 965 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1022
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1023 EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1082
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1083 NVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKI 1142
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1143 VMHKIRPHIATLRKYTYGKHILAK 1166
Score = 246 (91.7 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 67/259 (25%), Positives = 134/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALE---FIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 978
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 979 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPEQTLPILEE-LHQ 1034
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1035 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1092
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H
Sbjct: 1093 SRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1152
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1153 TLRKYTYGKHILAKLEKYY 1171
Score = 193 (73.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 67/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 845 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 903
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 904 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELD 961
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 962 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1021
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
E I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1022 PEQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1078
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1079 -K--FASNVVEK 1087
Score = 45 (20.9 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 669 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 720
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 721 TSSSLTPIGHSFYNG 735
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 457 (165.9 bits), Expect = 9.0e-40, Sum P(2) = 9.0e-40
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 704 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 763
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 764 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 819
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 820 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 877
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 878 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 937
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 938 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 997
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 998 VMHKIRPHIATLRKYTYGKHILAK 1021
Score = 242 (90.2 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 777 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 833
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 834 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 889
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 890 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 947
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 948 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1007
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1008 TLRKYTYGKHILAKLEKYY 1026
Score = 192 (72.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 700 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 758
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 759 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 816
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 817 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 876
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 877 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 933
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 934 -K--FASNVVEK 942
Score = 45 (20.9 bits), Expect = 9.0e-40, Sum P(2) = 9.0e-40
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 524 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 575
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 576 TSSSLTPIGHSFYNG 590
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 458 (166.3 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 822 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 881
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 882 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 937
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 938 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 995
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 996 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1055
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1056 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKI 1115
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1116 VMHKIRPHIATLRKYTYGKHILAK 1139
Score = 243 (90.6 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 67/259 (25%), Positives = 134/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 895 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 951
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 952 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1007
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1008 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1065
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H
Sbjct: 1066 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1125
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1126 TLRKYTYGKHILAKLEKYY 1144
Score = 192 (72.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 818 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 876
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 877 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 934
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 935 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 994
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 995 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1051
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1052 -K--FASNVVEK 1060
Score = 45 (20.9 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 642 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 693
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 694 TSSSLTPIGHSFYNG 708
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 458 (166.3 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 884 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 943
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 944 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 999
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 1000 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1057
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1058 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1117
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1118 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKI 1177
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1178 VMHKIRPHIATLRKYTYGKHILAK 1201
Score = 243 (90.6 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
Identities = 67/259 (25%), Positives = 134/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 1013
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 1014 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1069
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1070 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1127
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H
Sbjct: 1128 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIA 1187
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1188 TLRKYTYGKHILAKLEKYY 1206
Score = 192 (72.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 880 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 938
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 939 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 996
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 997 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1056
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1057 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1113
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1114 -K--FASNVVEK 1122
Score = 45 (20.9 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 704 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 755
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 756 TSSSLTPIGHSFYNG 770
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 457 (165.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 848 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 907
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 908 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 963
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 964 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1021
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1022 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1081
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1082 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 1141
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1142 VMHKIRPHIATLRKYTYGKHILAK 1165
Score = 242 (90.2 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 977
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 978 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1033
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1034 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1091
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 1092 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1151
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1152 TLRKYTYGKHILAKLEKYY 1170
Score = 192 (72.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 844 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 902
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 903 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 960
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 961 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1020
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1021 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1077
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1078 -K--FASNVVEK 1086
Score = 45 (20.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 668 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 719
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 720 TSSSLTPIGHSFYNG 734
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 457 (165.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 849 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 908
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 909 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 964
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 965 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1022
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1023 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1082
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1083 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 1142
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1143 VMHKIRPHIATLRKYTYGKHILAK 1166
Score = 242 (90.2 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 978
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 979 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1034
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1035 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1092
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 1093 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1152
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1153 TLRKYTYGKHILAKLEKYY 1171
Score = 192 (72.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 845 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 903
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 904 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 961
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 962 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1021
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1022 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1078
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1079 -K--FASNVVEK 1087
Score = 45 (20.9 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 669 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 720
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 721 TSSSLTPIGHSFYNG 735
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 457 (165.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 99/324 (30%), Positives = 182/324 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK
Sbjct: 884 EIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 943
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 944 FGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 999
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L +KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H +
Sbjct: 1000 LKCVKDQNGNHVVQKCIECV--QPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 1057
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L QD +GNYV+Q+++E P + ++++ +G+ + LS KF+S
Sbjct: 1058 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 1117
Query: 727 HVVEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVEKC+ H + R+ ++ E+ ++ PH +++D +ANYV+Q + V +
Sbjct: 1118 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 1177
Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1178 VMHKIRPHIATLRKYTYGKHILAK 1201
Score = 242 (90.2 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 67/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 1013
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ+ + + YG RV+Q+++E Q + +++ L
Sbjct: 1014 KCIE-CVQPQSLQFIIDAFK--GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQ 1069
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + V ++ H+ V+++C+ H+
Sbjct: 1070 HTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHA 1127
Query: 665 IGRHRDKLITEIS--KNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
R LI E+ +G H A +D + NYVVQ +I++ P ++ + + H
Sbjct: 1128 SRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIA 1187
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1188 TLRKYTYGKHILAKLEKYY 1206
Score = 192 (72.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 66/252 (26%), Positives = 117/252 (46%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + E G ++ + +G+R +Q +E ++ + L+ + L+ D+ GN+V+
Sbjct: 880 LQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY-QLMVDVFGNYVI 938
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DKLITEIS 677
Q+ + S E + + +A +GC V+Q+ + + ++++ E+
Sbjct: 939 QKFFEFGSLEQK--LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELD 996
Query: 678 KNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH-F 736
+ +D GN+VVQ IE P ++ FKG LST + V+++ L+H
Sbjct: 997 GHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCL 1056
Query: 737 GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
+ I+ EL H EQL+QD + NYVIQ L + P S I A R L S +
Sbjct: 1057 PDQTLPILEELHQ--HTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVAEIRGNVLVLSQH 1113
Query: 797 CKRIFSRNISKK 808
K F+ N+ +K
Sbjct: 1114 -K--FASNVVEK 1122
Score = 45 (20.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 202 PLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQ-GLSSSHTAVSKSFDDERK 260
P GF S +SLG ++G S G V++ G S +++ S D ++
Sbjct: 704 PANTSLGFGSSSSLGATLG--------SALGGFGTAVANSNTGSGSRRDSLTGSSDLYKR 755
Query: 261 --SLLTAFGGQYGEG 273
S LT G + G
Sbjct: 756 TSSSLTPIGHSFYNG 770
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 443 (161.0 bits), Expect = 7.7e-39, P = 7.7e-39
Identities = 98/303 (32%), Positives = 173/303 (57%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+D++G+I +KDQ G R +Q+ + + + Q++FDEV+ + LM + FGNY++QK
Sbjct: 458 SDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKFF 517
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
T EQ RIL + G ++ + L YG RV+QK IE+++ +Q+ L+ L +
Sbjct: 518 EHGTTEQK-RIL--ADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLI-GELNGHIV 573
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
+ D NGNHV+Q+C++ + + + D+ +ATH +GC V+QR + H +
Sbjct: 574 QCVTDQNGNHVIQKCIEKIPT--HLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEK 631
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
++ E+ + L QD +GNYV+Q+++E P + ++ + +G +LS KF+S+
Sbjct: 632 QVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASN 691
Query: 728 VVEKCLKH-FGESRSQIVHELL---SVPHFE----QLLQDPFANYVIQCALSVTKGPLHA 779
V+EKC++H R I++E+L + P+ ++L+DP+ANYVIQ L + + P
Sbjct: 692 VIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVE-PAQR 750
Query: 780 SLI 782
+I
Sbjct: 751 DMI 753
Score = 229 (85.7 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 63/260 (24%), Positives = 130/260 (50%)
Query: 488 AD-VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIF-DEVIDHIVELMMEQFGNYLVQK 545
AD + G+I S+ GCR +Q+ E LD QI+ E+ HIV+ + +Q GN+++QK
Sbjct: 529 ADKLSGHILSLTLQMYGCRVIQKAI-ESIELDKQILLIGELNGHIVQCVTDQNGNHVIQK 587
Query: 546 LLNVCTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
C E+ T ++ + + G + ++ + YG RV+Q+++E +Q ++ ++
Sbjct: 588 ----CIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRC 643
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
+ L++D GN+V+Q L+ + D + + +++ H+ V+++C+ H
Sbjct: 644 A-VSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIY--NLSQHKFASNVIEKCVQHG 700
Query: 665 IGRHRDKLITEI-----SKNGRH----LAQDPFGNYVVQYIIELKIPSVSANLLSQFKGH 715
R +I EI S N + + +DP+ NYV+Q I+++ P+ ++++ +
Sbjct: 701 CTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMIINRIQPF 760
Query: 716 YVHLSTQKFSSHVVEKCLKH 735
L H++ + K+
Sbjct: 761 VPTLKKVTPGKHIISRIEKY 780
Score = 160 (61.4 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 67/256 (26%), Positives = 118/256 (46%)
Query: 517 LDLQIIFDEVIDHIVELMMEQFGNYLVQ-KLLNVCTEEQMTRILLMVTEEPGQLVRVCLN 575
L +++ ++ HI E +Q G+ ++Q K+ N EE+ L+ E + + +
Sbjct: 451 LKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQ----LVFDEVVVAVHSLMTD 506
Query: 576 TYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYL 635
+G V+QK E T +Q ++ L L L + G V+Q+ ++ + D ++ L
Sbjct: 507 VFGNYVLQKFFEH-GTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIEL-DKQILL 564
Query: 636 FFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGR--HLAQDPFGNYVV 693
+ V T Q+G V+Q+CI I H + I + S +G LA P+G V+
Sbjct: 565 IGELNGHI-VQCVTDQNGNHVIQKCI-EKIPTHLIQFIID-SFHGHIYQLATHPYGCRVI 621
Query: 694 QYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESR--SQIVHELLSVP 751
Q I+E A +L + V L ++ ++V++ L++ G R S IV +L
Sbjct: 622 QRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLEN-GTPRDKSAIVCKLQG-- 678
Query: 752 HFEQLLQDPFANYVIQ 767
L Q FA+ VI+
Sbjct: 679 QIYNLSQHKFASNVIE 694
Score = 124 (48.7 bits), Expect = 0.00059, P = 0.00059
Identities = 42/163 (25%), Positives = 72/163 (44%)
Query: 646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVS 705
+ + Q G ++Q+ I ++ + + E+ L D FGNYV+Q E
Sbjct: 466 EFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQK 525
Query: 706 ANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFG-ESRSQIVHELLSVPHFEQLLQDPFANY 764
L + GH + L+ Q + V++K ++ + + ++ EL H Q + D N+
Sbjct: 526 RILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNG--HIVQCVTDQNGNH 583
Query: 765 VIQ-CALSVTKGPLHAS--LIEAARRHT-NLRTSPYCKRIFSR 803
VIQ C + K P H +I++ H L T PY R+ R
Sbjct: 584 VIQKC---IEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQR 623
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 450 (163.5 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 98/325 (30%), Positives = 182/325 (56%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G++ ++DQ+G RF+Q + + + Q++F+E++ +LM++ FGNY++QK
Sbjct: 813 EIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFE 872
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGF 606
+ +Q L + G ++ + L YG RV+QK +E + + QQV +V+ L
Sbjct: 873 FGSLDQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHV 928
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDA-AAKFCVDIATHQHGCCVLQRCIAHSI 665
L +KD NGNHV+Q+C++C+ + + + DA + ++TH +GC V+QR + H +
Sbjct: 929 LKCVKDQNGNHVVQKCIECV--QPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCL 986
Query: 666 GRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS 725
++ EI ++ L QD +GNYV+Q+++E + ++S+ +G+ + LS KF+
Sbjct: 987 PEQTLSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFA 1046
Query: 726 SHVVEKCLKH-FGESRSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHA 779
S+VVEKC+ H R+ ++ E+ S+ PH +++D +ANYV+Q + V +
Sbjct: 1047 SNVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRK 1106
Query: 780 SLIEAARRH-TNLRTSPYCKRIFSR 803
++ R H LR Y K I ++
Sbjct: 1107 IVMHKIRPHIATLRKYTYGKHILAK 1131
Score = 241 (89.9 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 65/259 (25%), Positives = 133/259 (51%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 886 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 942
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + + ++ + Q+ + + YG RV+Q+++E Q +S+++ +
Sbjct: 943 KCIE-CVQPHALQFIIDAFKGQ-QVFALSTHPYGCRVIQRILEHCLPEQTLSILEE-IHQ 999
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHS 664
L++D GN+V+Q L+ ED + + ++ H+ V+++C+ HS
Sbjct: 1000 HTEQLVQDQYGNYVIQHVLEHGRAEDKSKIV--SEIRGNVLGLSQHKFASNVVEKCVTHS 1057
Query: 665 IGRHRDKLITEISK--NGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYV 717
+ R LI E+ +G H A +D + NYVVQ +I++ P+ ++ + + H
Sbjct: 1058 LRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIA 1117
Query: 718 HLSTQKFSSHVVEKCLKHF 736
L + H++ K K++
Sbjct: 1118 TLRKYTYGKHILAKLEKYY 1136
Score = 40 (19.1 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 14/67 (20%), Positives = 23/67 (34%)
Query: 105 FSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDA 164
F + A+P + N + +N + GG + T+ VN A
Sbjct: 448 FQQQAATPSNSANQQSAAQNQQNQQQVMRAGGNQRPLTPSQGQQGQQTEQLVAAAAVNSA 507
Query: 165 LDYETGL 171
L + GL
Sbjct: 508 LAFGQGL 514
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 444 (161.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 103/325 (31%), Positives = 175/325 (53%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
A++ G++ + DQ G RF+Q+ + T + ++++E++ H + LM + FGNY++QK
Sbjct: 633 AEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFF 692
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
Q + + + ++ + L YG RV+QK IE + Q++ +VK L +
Sbjct: 693 EHGLPPQRRELADKLFDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKE-LDGHVM 748
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYL--FFDAAAKFCVDIATHQHGCCVLQRCIAHSI 665
++D NGNHV+Q+C++C+ E+ E + FF V ++TH +GC V+QR + H
Sbjct: 749 RCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNV----VTLSTHPYGCRVIQRVLEHCH 804
Query: 666 GRH-RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKF 724
+ K++ EI LAQD +GNYV+Q+++E P ++ + G V +S QKF
Sbjct: 805 DPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKF 864
Query: 725 SSHVVEKCLKHFG-ESRSQIVHELLSVPH----FEQLLQDPFANYVIQCALSVTKGPLHA 779
+S+VVEKCL G E R +V+E+L + +++D FANYV+Q L
Sbjct: 865 ASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRE 924
Query: 780 SLIEAARRHTN-LRTSPYCKRIFSR 803
++ + H N L+ Y K I +R
Sbjct: 925 LILGRIKVHLNALKKYTYGKHIVAR 949
Score = 210 (79.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 60/213 (28%), Positives = 111/213 (52%)
Query: 562 VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQR 621
+ E G +V + YG+R +Q+ +ET T + ++V + P L L+ D+ GN+V+Q+
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETA-TSDEKNMVYEEIMPHALALMTDVFGNYVIQK 690
Query: 622 CLQC-LSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNG 680
+ L + E+ D + ++ +GC V+Q+ I + K++ E+ +
Sbjct: 691 FFEHGLPPQRRELA---DKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHV 747
Query: 681 RHLAQDPFGNYVVQYIIELKIPSVSAN-LLSQFKGHYVHLSTQKFSSHVVEKCLKHFGE- 738
+D GN+VVQ IE +P + ++S F G+ V LST + V+++ L+H +
Sbjct: 748 MRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDP 806
Query: 739 -SRSQIVHELLSVPHFEQLLQDPFANYVIQCAL 770
++S+++ E++S L QD + NYVIQ L
Sbjct: 807 DTQSKVMDEIMST--ISMLAQDQYGNYVIQHVL 837
Score = 198 (74.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 63/256 (24%), Positives = 118/256 (46%)
Query: 503 GCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLNVCTEEQMTRILLM 561
GCR +Q+ E LD +I + +D H++ + +Q GN++VQK + C E+ I +
Sbjct: 720 GCRVIQKAI-EVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIE-CVPEE--NIEFI 775
Query: 562 VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQR 621
++ G +V + + YG RV+Q+++E S V + L +D GN+V+Q
Sbjct: 776 ISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQH 835
Query: 622 CLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEI----S 677
L+ D + + A K V ++ + V+++C+ R+ L+ E+
Sbjct: 836 VLEH-GKPDERTVIIKELAGKI-VQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTD 893
Query: 678 KNG--RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
+N + + +D F NYVVQ ++E +L + K H L + H+V + K
Sbjct: 894 ENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKL 953
Query: 736 FGESRSQIVHELLSVP 751
++ + L+ P
Sbjct: 954 VAAGERRMALQSLTQP 969
Score = 43 (20.2 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 23 EKEEKRVIKERMRR--EEDELGRMLN 46
EKE ++ E+ RR E DEL R LN
Sbjct: 24 EKEIGVLLGEQQRRQVEADELERELN 49
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 440 (159.9 bits), Expect = 3.3e-38, P = 3.3e-38
Identities = 101/323 (31%), Positives = 172/323 (53%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+D+ G + + DQ+G RF+Q+ + + + +F EV+ +LM + FGNY++QK +
Sbjct: 627 SDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFI 686
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
T Q + V + GQ+V + L YG RV+QK +E + Q+ L++ L L
Sbjct: 687 EHGTPAQREEL---VKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRE-LDGNVL 742
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAH-SIG 666
++D NGNHV+Q+C++ S + A ++TH +GC V+QR + H S
Sbjct: 743 KCVRDQNGNHVIQKCIE--SMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDD 800
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
+I EI ++ LA D +GNYV Q+++E P ++ + G+ V +S K++S
Sbjct: 801 EETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYAS 860
Query: 727 HVVEKCLKHFGES-RSQIVHELLSVP----HFEQLLQDPFANYVIQCALSVTKGPLHASL 781
+VVEKCL+H + R ++ E++ H +++D FANYV+Q L ++K L
Sbjct: 861 NVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREIL 920
Query: 782 IEAARRHT-NLRTSPYCKRIFSR 803
++ + H +LR Y K I +R
Sbjct: 921 VQRMKIHLQSLRKYTYGKHIVAR 943
Score = 227 (85.0 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 68/264 (25%), Positives = 128/264 (48%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQI-IFDEVIDHIVELMMEQFGNYLVQKLLNVC 550
G + S++ GCR +Q+ E +D + + E+ ++++ + +Q GN+++QK C
Sbjct: 703 GQMVSLSLQMYGCRVIQKAL-EVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQK----C 757
Query: 551 TEEQMT-RILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVS-LVKAALKPGFLD 608
E RI ++ GQ+ + + YG RV+Q+++E ++ ++ L+ F
Sbjct: 758 IESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFA- 816
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L D GN+V Q L+ + +E + V ++ H++ V+++C+ H+
Sbjct: 817 LAHDQYGNYVTQHVLE--RGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTE 874
Query: 669 RDKLITEI---SKNGRHLA---QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
R+ LI EI S+ HL +D F NYVVQ ++E+ L+ + K H L
Sbjct: 875 REFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKY 934
Query: 723 KFSSHVVEKCLKHFGESRSQIVHE 746
+ H+V + + FGE S++ E
Sbjct: 935 TYGKHIVARFEQLFGEE-SEVSEE 957
Score = 186 (70.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 57/227 (25%), Positives = 109/227 (48%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L +++ G++V ++ +G+R +Q+ +E ++ S+ L P L+ D+ GN+V+
Sbjct: 624 LELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVL-PQASKLMTDVFGNYVI 682
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ ++ + E L A + V ++ +GC V+Q+ + + +LI E+ N
Sbjct: 683 QKFIEHGTPAQREE-LVKQLAGQM-VSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGN 740
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSAN-LLSQFKGHYVHLSTQKFSSHVVEKCLKHFGE 738
+D GN+V+Q IE +P+ +++ F+G LST + V+++ L+H +
Sbjct: 741 VLKCVRDQNGNHVIQKCIE-SMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSD 799
Query: 739 SRSQ--IVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIE 783
I+ E+L L D + NYV Q L K +IE
Sbjct: 800 DEETHCIIDEILESAF--ALAHDQYGNYVTQHVLERGKPDERRQIIE 844
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 443 (161.0 bits), Expect = 3.9e-38, P = 3.9e-38
Identities = 103/318 (32%), Positives = 173/318 (54%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ +I ++DQ+G RF+Q+ + T + Q++F E++ LM + FGNY++QK
Sbjct: 1111 DLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFE 1170
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
T EQ + + V G ++++ L YG RV+QK +E++ QQ +V L L
Sbjct: 1171 FGTPEQKNTLGMQVK---GHVLQLALQMYGCRVIQKALESISPEQQQEIVHE-LDGHVLK 1226
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV-DIATHQHGCCVLQRCIAHSIGR 667
+KD NGNHV+Q+C++C+ D F A K V ++TH +GC V+QR + H
Sbjct: 1227 CVKDQNGNHVVQKCIECV---DPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAE 1283
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
++ E+ ++ L QD +GNYV+Q+++E + L++ +G + LS KF+S+
Sbjct: 1284 QTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASN 1343
Query: 728 VVEKCLKHF--GESRSQIVHELLSVPH--FEQLLQDPFANYVIQCALSVTKGPLHASLIE 783
VVEKC+ H GE R+ ++ E+ + +++D +ANYV+Q + V++ L+
Sbjct: 1344 VVEKCVTHATRGE-RTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMT 1402
Query: 784 AARRH-TNLRTSPYCKRI 800
R H LR Y K I
Sbjct: 1403 KIRPHMAALRKYTYGKHI 1420
Score = 266 (98.7 bits), Expect = 6.9e-19, P = 6.9e-19
Identities = 66/251 (26%), Positives = 128/251 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
V+G++ +A GCR +Q+ + + Q I E+ H+++ + +Q GN++VQK +
Sbjct: 1184 VKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIE- 1242
Query: 550 CTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL 609
C + + ++ + GQ+ + + YG RV+Q+++E T +Q + + L L
Sbjct: 1243 CVDPVALQFIINAFK--GQVYSLSTHPYGCRVIQRILEHC-TAEQTTPILDELHEHTEQL 1299
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
I+D GN+V+Q L+ ED + L K V ++ H+ V+++C+ H+ R
Sbjct: 1300 IQDQYGNYVIQHVLEHGKQEDKSI-LINSVRGKVLV-LSQHKFASNVVEKCVTHATRGER 1357
Query: 670 DKLITEI---SKNGRH-LAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS 725
LI E+ + N H + +D + NYVVQ +I++ P+ L+++ + H L +
Sbjct: 1358 TGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYG 1417
Query: 726 SHVVEKCLKHF 736
H+ K K++
Sbjct: 1418 KHINAKLEKYY 1428
Score = 160 (61.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 65/286 (22%), Positives = 127/286 (44%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+++ YS+ D G +Q+ F+ GT + +V H+++L ++ +G ++QK L
Sbjct: 1146 SEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKAL 1205
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
+ EQ I V E G +++ + G VVQK IE + + + A K
Sbjct: 1206 ESISPEQQQEI---VHELDGHVLKCVKDQNGNHVVQKCIECVDP-VALQFIINAFKGQVY 1261
Query: 608 DLIKDLNGNHVLQRCLQ-CLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
L G V+QR L+ C + + + D + + Q+G V+Q + H G
Sbjct: 1262 SLSTHPYGCRVIQRILEHCTAEQTTPI---LDELHEHTEQLIQDQYGNYVIQHVLEH--G 1316
Query: 667 RHRDKLITEISKNGRHL--AQDPFGNYVVQYIIELKIPSVSANLLSQ---FKGHYVHLST 721
+ DK I S G+ L +Q F + VV+ + L+ + F + +H+
Sbjct: 1317 KQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMM 1376
Query: 722 Q-KFSSHVVEKCLKHFGESRSQIVHELLSV-PHFEQLLQDPFANYV 765
+ +++++VV+K + E +Q+ + + PH L + + ++
Sbjct: 1377 KDQYANYVVQKMID-VSEP-TQLKKLMTKIRPHMAALRKYTYGKHI 1420
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 441 (160.3 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 106/323 (32%), Positives = 174/323 (53%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+++ G++ + DQ G RF+Q+ + T + IF E++ + LM + FGNY++QK
Sbjct: 663 SEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFF 722
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
T +Q + VT G ++ + L YG RV+QK +E ++ QQ +VK L +
Sbjct: 723 EHGTTKQRKELAEQVT---GHVLALSLQMYGCRVIQKALEVVELEQQARMVKE-LDGSVM 778
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
+ D NGNHV+Q+C++ L +D ++ K ++TH +GC V+QR + H
Sbjct: 779 KCVHDQNGNHVIQKCIERLP-QDWIQFIISSFYGKVLA-LSTHPYGCRVIQRVLEHIDDI 836
Query: 668 HRDKLITE-ISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
++I E I + LAQD +GNYV+Q+II+ P + ++++ G V +S QKF+S
Sbjct: 837 ETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFAS 896
Query: 727 HVVEKCLKHFG-ESRSQIVHELLSVPH----FEQLLQDPFANYVIQCALSVTKGPLHASL 781
+VVEKCL G E R +V+E+L + +++DPF NYV+Q L A +
Sbjct: 897 NVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALI 956
Query: 782 IEAARRHTN-LRTSPYCKRIFSR 803
+ + H N L+ Y K I +R
Sbjct: 957 LSRIKVHLNALKRYTYGKHIVAR 979
Score = 203 (76.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 61/260 (23%), Positives = 126/260 (48%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLN 548
V G++ +++ GCR +Q+ E L+ Q + +D +++ + +Q GN+++QK +
Sbjct: 737 VTGHVLALSLQMYGCRVIQKAL-EVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIE 795
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
++ I +++ G+++ + + YG RV+Q+++E + + ++ +
Sbjct: 796 RLPQDW---IQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCT 852
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L +D GN+V+Q +Q + +E + A V ++ + V+++C+
Sbjct: 853 LAQDQYGNYVIQHIIQ--HGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEE 910
Query: 669 RDKLITEI----SKNG--RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722
R L+ E+ +N + + +DPFGNYVVQ ++E A +LS+ K H L
Sbjct: 911 RQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRY 970
Query: 723 KFSSHVVEKCLKHF--GESR 740
+ H+V + K GE R
Sbjct: 971 TYGKHIVARVEKLITTGERR 990
Score = 181 (68.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 50/211 (23%), Positives = 106/211 (50%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L ++E G ++ ++ YG+R +Q+ +ET T ++ + + + P L+ D+ GN+V+
Sbjct: 660 LELSEIVGHVIEFSMDQYGSRFIQQKLETA-TDEEKNAIFPEILPYGRTLMTDVFGNYVI 718
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + + + + + + ++ +GC V+Q+ + + +++ E+ +
Sbjct: 719 QKFFEHGTTKQRKELA--EQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGS 776
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSAN-LLSQFKGHYVHLSTQKFSSHVVEKCLKHFGE 738
D GN+V+Q IE ++P ++S F G + LST + V+++ L+H +
Sbjct: 777 VMKCVHDQNGNHVIQKCIE-RLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDD 835
Query: 739 SRSQ--IVHELLSVPHFEQLLQDPFANYVIQ 767
+Q I+ E++ L QD + NYVIQ
Sbjct: 836 IETQRIIMEEIMD--SVCTLAQDQYGNYVIQ 864
Score = 37 (18.1 bits), Expect = 3.6e-37, Sum P(2) = 3.6e-37
Identities = 21/100 (21%), Positives = 38/100 (38%)
Query: 234 LNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFG 293
L++ V D HTA S + + + FG GD + L + + G
Sbjct: 521 LHSPVMDPHYSQYLHTASSTAAPIDHSLIRNNFGTS--NGDTANEYLAMLLAQNRQ-QLG 577
Query: 294 PSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVN 333
++ + + G + G L +PS+ SR++ N
Sbjct: 578 NLNAANSRFFESPSYDLGNMY--LGNHLPSPSKNSRNFQN 615
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 433 (157.5 bits), Expect = 5.8e-37, Sum P(2) = 5.8e-37
Identities = 101/325 (31%), Positives = 174/325 (53%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+++ G++ + DQ G RF+Q+ + T + ++++E++ + LM + FGNY++QK
Sbjct: 629 SEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFF 688
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
Q + + + ++ + L YG RV+QK IE + Q++ +VK L +
Sbjct: 689 EHGLPPQRRELAEKLFDH---VLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKE-LDGHVM 744
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYL--FFDAAAKFCVDIATHQHGCCVLQRCIAHSI 665
++D NGNHV+Q+C++C+ E+ E + FF V ++TH +GC V+QR + H
Sbjct: 745 RCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHV----VTLSTHPYGCRVIQRVLEHCH 800
Query: 666 GRH-RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKF 724
+ K++ EI LAQD +GNYVVQ+++E P ++ + G V +S QKF
Sbjct: 801 DPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKF 860
Query: 725 SSHVVEKCLKHFG-ESRSQIVHELLSVPH----FEQLLQDPFANYVIQCALSVTKGPLHA 779
+S+VVEKCL G E R +V+E+L + +++D FANYV+Q L
Sbjct: 861 ASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRE 920
Query: 780 SLIEAARRH-TNLRTSPYCKRIFSR 803
++ + H T L+ Y K + +R
Sbjct: 921 LILTRIKVHLTALKKYTYGKHVVAR 945
Score = 219 (82.2 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 62/214 (28%), Positives = 114/214 (53%)
Query: 562 VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQR 621
++E G +V + YG+R +Q+ +ET T ++ ++V + P L L+ D+ GN+V+Q+
Sbjct: 628 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEK-NMVYEEIMPQALVLMTDVFGNYVIQK 686
Query: 622 CLQC-LSNEDNEVY-LFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
+ L + E+ FD + ++ +GC V+Q+ I + K++ E+ +
Sbjct: 687 FFEHGLPPQRRELAEKLFDHV----LPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGH 742
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSAN-LLSQFKGHYVHLSTQKFSSHVVEKCLKHFGE 738
+D GN+VVQ IE +P + ++S F GH V LST + V+++ L+H +
Sbjct: 743 VMRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHD 801
Query: 739 --SRSQIVHELLSVPHFEQLLQDPFANYVIQCAL 770
++S+++ E+LS L QD + NYV+Q L
Sbjct: 802 PDTQSKVMEEILST--VSMLAQDQYGNYVVQHVL 833
Score = 204 (76.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 64/266 (24%), Positives = 123/266 (46%)
Query: 493 YIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLNVCT 551
++ ++ GCR +Q+ E LD +I + +D H++ + +Q GN++VQK + C
Sbjct: 706 HVLPLSLQMYGCRVIQKAI-EVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIE-CV 763
Query: 552 EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIK 611
E+ I +++ G +V + + YG RV+Q+++E S V + L +
Sbjct: 764 PEE--NIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQ 821
Query: 612 DLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK 671
D GN+V+Q L+ D + + A K V ++ + V+++C+ R+
Sbjct: 822 DQYGNYVVQHVLEH-GKPDERTVIIKELAGKI-VQMSQQKFASNVVEKCLTFGGPEEREL 879
Query: 672 LITEI----SKNG--RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS 725
L+ E+ +N + + +D F NYVVQ ++E +L++ K H L +
Sbjct: 880 LVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYG 939
Query: 726 SHVVEKCLKHFGESRSQIVHELLSVP 751
HVV + K ++ + L+ P
Sbjct: 940 KHVVARIEKLVAAGERRMALQSLTQP 965
Score = 43 (20.2 bits), Expect = 5.8e-37, Sum P(2) = 5.8e-37
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 23 EKEEKRVIKERMRR--EEDELGRMLN 46
EKE ++ E+ RR E DEL R LN
Sbjct: 24 EKEIGVLLGEQQRRQVEADELERELN 49
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 431 (156.8 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
Identities = 101/325 (31%), Positives = 173/325 (53%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+++ G++ + DQ G RF+Q+ + T + ++++E++ + LM + FGNY++QK
Sbjct: 625 SEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFF 684
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
Q + + + ++ + L YG RV+QK IE + Q++ +VK L +
Sbjct: 685 EHGLPPQRRELGEKLIDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKE-LDGHVM 740
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYL--FFDAAAKFCVDIATHQHGCCVLQRCIAHSI 665
++D NGNHV+Q+C++C+ E+ E + FF V ++TH +GC V+QR + H
Sbjct: 741 RCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHV----VTLSTHPYGCRVIQRVLEHCH 796
Query: 666 GRH-RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKF 724
+ K++ EI L QD +GNYVVQ+++E P ++ + G V +S QKF
Sbjct: 797 NPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKF 856
Query: 725 SSHVVEKCLKHFG-ESRSQIVHELLSVPH----FEQLLQDPFANYVIQCALSVTKGPLHA 779
+S+VVEKCL G E R +V+E+L + +++D FANYV+Q L
Sbjct: 857 ASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRE 916
Query: 780 SLIEAARRHTN-LRTSPYCKRIFSR 803
++ + H N L+ Y K I +R
Sbjct: 917 LILTRIKVHLNALKKYTYGKHIVAR 941
Score = 212 (79.7 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 59/213 (27%), Positives = 113/213 (53%)
Query: 562 VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQR 621
++E G +V + YG+R +Q+ +ET T ++ ++V + P L L+ D+ GN+V+Q+
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEK-NMVYEEIMPKALALMTDVFGNYVIQK 682
Query: 622 CLQC-LSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNG 680
+ L + E+ + + ++ +GC V+Q+ I + +++ E+ +
Sbjct: 683 FFEHGLPPQRRELG---EKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHV 739
Query: 681 RHLAQDPFGNYVVQYIIELKIPSVSAN-LLSQFKGHYVHLSTQKFSSHVVEKCLKHFG-- 737
+D GN+VVQ IE +P + ++S F GH V LST + V+++ L+H
Sbjct: 740 MRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNP 798
Query: 738 ESRSQIVHELLSVPHFEQLLQDPFANYVIQCAL 770
+++S+++ E+LS L QD + NYV+Q L
Sbjct: 799 DTQSKVMEEILST--VSMLTQDQYGNYVVQHVL 829
Score = 197 (74.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 63/256 (24%), Positives = 118/256 (46%)
Query: 503 GCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLNVCTEEQMTRILLM 561
GCR +Q+ E LD +I + +D H++ + +Q GN++VQK + C E+ I +
Sbjct: 712 GCRVIQKAI-EVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIE-CVPEE--NIEFI 767
Query: 562 VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQR 621
++ G +V + + YG RV+Q+++E S V + L +D GN+V+Q
Sbjct: 768 ISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQH 827
Query: 622 CLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEI----S 677
L+ D + + A K V ++ + V+++C+ R+ L+ E+
Sbjct: 828 VLEH-GKPDERTVIIKELAGKI-VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTD 885
Query: 678 KNG--RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
+N + + +D F NYVVQ ++E +L++ K H L + H+V + K
Sbjct: 886 ENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKL 945
Query: 736 FGESRSQIVHELLSVP 751
++ + L P
Sbjct: 946 VAAGERRMALQSLPQP 961
Score = 45 (20.9 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 343 GLDSNRDIGVMNHLFSSQLVQTESD-LDLDTLLYNHSM----LKGRTNA---MTNNRVSE 394
G D ++IGV+ L Q Q E+D L+ + LY + G +A + +
Sbjct: 21 GDDYEKEIGVL--LGEQQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGA 78
Query: 395 SFMPVNGAGAIEGFGCED 412
SF+ G GFG +D
Sbjct: 79 SFLEFGGVNKGNGFGGDD 96
Score = 43 (20.2 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 23 EKEEKRVIKERMRR--EEDELGRMLN 46
EKE ++ E+ RR E DEL R LN
Sbjct: 25 EKEIGVLLGEQQRRQVEADELERELN 50
Score = 42 (19.8 bits), Expect = 8.5e-37, Sum P(3) = 8.5e-37
Identities = 19/71 (26%), Positives = 27/71 (38%)
Query: 269 QYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRIS 328
QY +F L + S D +G SY ++ QR G S G ++ S S
Sbjct: 480 QYARFSENADSFDLLNDPSMDRNYGNSYMNMLEI---QRAYLGSQKSQYGLPYKSGSPNS 536
Query: 329 RSYVNDAFVGA 339
SY G+
Sbjct: 537 HSYYGSPTFGS 547
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 387 MTNNRVSESFMPV-NGAGAIEGFGCEDS------FIIQGRSINQAASKGR 429
M N + ++ P+ A A G+ DS F+ G++++++ + GR
Sbjct: 408 MANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGR 457
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 402 (146.6 bits), Expect = 8.6e-36, Sum P(2) = 8.6e-36
Identities = 96/323 (29%), Positives = 166/323 (51%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+D+ G+I + DQ+G RF+Q+ + + +F E++ H +LM + FGNY++QK
Sbjct: 531 SDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFF 590
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
Q + + GQ+V + L YG RV+QK ++ ++ Q+V L + L +
Sbjct: 591 EYGNSTQRKEL---ADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARE-LDGQVM 646
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
++D NGNHV+Q+C++ + D ++ + + ++ H +GC V+QR +
Sbjct: 647 RCVRDQNGNHVIQKCIENIP-ADKVGFMLYAFRGQVS-SLSMHPYGCRVIQRLLERCSHD 704
Query: 668 HRDKLITE-ISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
H+ + ITE I ++ L++D +GNYV Q+++E + + GH V LS KF+S
Sbjct: 705 HQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFAS 764
Query: 727 HVVEKCLKHFGE-SRSQIVHELLSVPH-FEQLL---QDPFANYVIQCALSVTKGPLHASL 781
+V+EKCL++ G R I+ E+ + LL +D + NYV+Q +L
Sbjct: 765 NVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTL 824
Query: 782 IEAARRHTN-LRTSPYCKRIFSR 803
R H + L+ Y K I SR
Sbjct: 825 FSRVRMHASALKKYTYGKHIVSR 847
Score = 63 (27.2 bits), Expect = 8.6e-36, Sum P(2) = 8.6e-36
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 302 QYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQ 341
+Y Q + + +NA TW+Q S + VNDA +GA Q
Sbjct: 249 RYGQPERQPHQQQNNA-TWIQGGSNMGSHGVNDAVIGAGQ 287
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 391 (142.7 bits), Expect = 3.3e-33, P = 3.3e-33
Identities = 96/325 (29%), Positives = 169/325 (52%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D++ + AKDQ+G RF+Q+ + + D IF V+++ ELM + FGNY++QK
Sbjct: 342 DIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFE 401
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
EQ +++ + G ++++ L YG RV+QK +E ++ + Q ++ ++ L
Sbjct: 402 FGNNEQRNQLVGTIR---GNVMKLALQMYGCRVIQKALEYVEEKYQHEIL-GEMEGQVLK 457
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVD----IATHQHGCCVLQRCIAHS 664
+KD NGNHV+Q+ ++ + E + DA K D ++ H +GC V+QR + +
Sbjct: 458 CVKDQNGNHVIQKVIERV--EPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYC 515
Query: 665 IGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQ-FKGHYVHLSTQK 723
+ ++ + + + L D +GNYV+Q++IE PS ++ + + K
Sbjct: 516 NEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHK 575
Query: 724 FSSHVVEKCLKHFGES-RSQIVHELLSVPH-----FEQLLQDPFANYVIQCALSVTKGPL 777
F+S+V+EKCL G + R+ I+ ++ P+ Q+++DPFANYV+Q L V P
Sbjct: 576 FASNVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVAD-PQ 634
Query: 778 HASLIEAA-RRH-TNLRTSPYCKRI 800
H I + H LR + K I
Sbjct: 635 HRKKITLTIKPHIATLRKYNFGKHI 659
Score = 221 (82.9 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 60/257 (23%), Positives = 121/257 (47%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+RG + +A GCR +Q+ + I E+ +++ + +Q GN+++QK++
Sbjct: 415 IRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQNGNHVIQKVIER 474
Query: 550 CTEEQMTRILLMVTEEPGQLV-RVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
E++ I+ T+ V + ++ YG RV+Q+++E Q+ ++ A L+
Sbjct: 475 VEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPVLDA-LQIHLKQ 533
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
L+ D GN+V+Q ++ S D E + D + + A H+ V+++C+
Sbjct: 534 LVLDQYGNYVIQHVIEHGSPSDKE-QIVQDVISDDLLKFAQHKFASNVIEKCLTFGGHAE 592
Query: 669 RDKLITEISKNGR-------HLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
R+ +I ++ + + +DPF NYVVQ ++++ P + K H L
Sbjct: 593 RNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLTIKPHIATLRK 652
Query: 722 QKFSSHVVEKCLKHFGE 738
F H++ K K+F +
Sbjct: 653 YNFGKHILLKLEKYFAK 669
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 382 (139.5 bits), Expect = 3.9e-32, P = 3.9e-32
Identities = 101/321 (31%), Positives = 165/321 (51%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKL 546
+D+ G + + DQ+G RF+Q+ T + + +F E+ ++LMM+ FGNY+VQK
Sbjct: 395 SDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKY 454
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
E+Q +ILL ++ G + + L YG RVVQK IE + QV L++ L
Sbjct: 455 FEFGNEKQK-QILL--SQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQE-LDGHV 510
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
LD + D NGNHV+Q+ ++C+ + + A ++ H +GC V+QR I H
Sbjct: 511 LDCVCDQNGNHVIQKAIECI--DTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHS 568
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
R +I E+ + L QD +GNYVVQ+I+ S + H + LS KF+S
Sbjct: 569 E-RKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFAS 627
Query: 727 HVVEKCLKHFGE-SRSQIVHELLSVPH-----FEQLLQDPFANYVIQCALSVTKGPLHAS 780
+VVE+C+ + + R +I+++++S +++D +ANYVIQ L +
Sbjct: 628 NVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDL 687
Query: 781 LIEAARRHTN-LRTSPYCKRI 800
LI H + L+ Y K +
Sbjct: 688 LISYIYPHISVLKKFTYGKHL 708
Score = 233 (87.1 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 71/273 (26%), Positives = 142/273 (52%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDE-GTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKL 546
+ ++G+++S++ GCR +Q+ + +Q+I E+ H+++ + +Q GN+++QK
Sbjct: 468 SQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLI-QELDGHVLDCVCDQNGNHVIQKA 526
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
+ C + + +L P Q+ + + YG RV+Q+ IE + ++ L+ L P
Sbjct: 527 IE-CIDTGHLQFILRALR-P-QIHVLSAHPYGCRVIQRAIEHCHSERK--LIIEELLPHI 581
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAH--S 664
L L +D GN+V+Q L+ S D + Y+F D + ++ H+ V++RCI++
Sbjct: 582 LKLTQDQYGNYVVQHILRTGSESDKK-YIF-DLMIDHLLFLSCHKFASNVVERCISYISD 639
Query: 665 IGRHR--DKLITEISKNGRHLA---QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHL 719
+ R R +K+I+E ++N L +D + NYV+Q +++ P +LL + Y H+
Sbjct: 640 VDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDAS-PEEERDLLISYI--YPHI 696
Query: 720 STQK---FSSHVVEKCLKHFGESRSQIVHELLS 749
S K + H++ ++ F + V +L S
Sbjct: 697 SVLKKFTYGKHLIMS-VERFRQKSISAVPKLAS 728
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 369 (135.0 bits), Expect = 7.9e-32, P = 7.9e-32
Identities = 102/318 (32%), Positives = 161/318 (50%)
Query: 496 SMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQM 555
+ AKD+ L +GT + I++ +I I ELM++ +G+ +VQ L+ C+ EQ+
Sbjct: 207 AFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQI 266
Query: 556 TRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTR--QQVSLVKAALKPGFLDLIKDL 613
+++ +VT++ Q V +C+++ GT +Q L+ + R Q+ + ++ L L K
Sbjct: 267 VQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKS- 325
Query: 614 NGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH---RD 670
NH + L C L + + C IA QHGCC+LQ C + R
Sbjct: 326 --NHAIFVILACFRLFPLHCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQ 383
Query: 671 KLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVE 730
+LI E N L + +GNYVVQYI+EL + L+ Q G+Y HL+ K+ SH V+
Sbjct: 384 RLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQ 443
Query: 731 KCLK-HFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASL-IEAARRH 788
K LK + +SR IV +LL + LL DPF NYVIQ A V+K + L R
Sbjct: 444 KLLKLRWIDSRV-IVIDLLR--EIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNI 500
Query: 789 TNLRTSPYCKRIFSR-NI 805
+R + + ++ + NI
Sbjct: 501 PMMRCNKFGNKVLEKLNI 518
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 364 (133.2 bits), Expect = 6.7e-31, P = 6.7e-31
Identities = 96/327 (29%), Positives = 165/327 (50%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQR-VFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKL 546
+D+RG + AKDQ G RF+Q+ + + IFDEV+ + EL+ + FGNY+VQK
Sbjct: 193 SDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKF 252
Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
E R++ + + ++ Y RV+QK +E + Q+ ++ + ++
Sbjct: 253 FEYGEERHWARLVDAIID---RVPEYAFQMYACRVLQKALEKINEPLQIKIL-SQIRHVI 308
Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDA---AAKFCVDIATHQHGCCVLQRCIAH 663
+KD NGNHV+Q+ ++ +S + V D ++ +++ +GC V+QRC+ H
Sbjct: 309 HRCMKDQNGNHVVQKAIEKVSPQ--YVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEH 366
Query: 664 SIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQK 723
+I +I K +A + +GNYVVQ++IE ++++ + +T K
Sbjct: 367 CSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHK 426
Query: 724 FSSHVVEKCLKHFGE-SRSQIV-----HELLSVPHFEQLLQDPFANYVIQCALSVTKGPL 777
+SS+V+EKCL+ +S IV H+ SVP Q+++D +ANYV+Q
Sbjct: 427 YSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQ 486
Query: 778 HASLIEAARRHTN-LRTSPYCKRIFSR 803
LI R H LR P+ K I ++
Sbjct: 487 RRELILTVRPHIPVLRQFPHGKHILAK 513
Score = 178 (67.7 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 55/241 (22%), Positives = 108/241 (44%)
Query: 504 CRFLQRVFDEGTFLDLQIIFDEVIDHIVE-LMMEQFGNYLVQKLLNVCTEEQMTRILLMV 562
CR LQ+ ++ LQI I H++ M +Q GN++VQK + + + + I+ +
Sbjct: 282 CRVLQKALEKINE-PLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTL 340
Query: 563 TEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRC 622
E + + ++ YG RVVQ+ +E Q ++ + F ++ + GN+V+Q
Sbjct: 341 LESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVI-GQIHKRFDEIANNQYGNYVVQHV 399
Query: 623 LQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEIS--KNG 680
++ S ED V + + + ATH++ V+++C+ H+ ++ + G
Sbjct: 400 IEHGSEEDRMVIV--TRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEG 457
Query: 681 R-----HLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
+ +D + NYVVQ + + L+ + H L H++ K K+
Sbjct: 458 SVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHGKHILAKLEKY 517
Query: 736 F 736
F
Sbjct: 518 F 518
Score = 155 (59.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 56/253 (22%), Positives = 112/253 (44%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L +++ G L++ + G+R +Q+ + + K R + + + +L+ D+ GN+V+
Sbjct: 190 LKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVV 249
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKN 679
Q+ + E+ DA + A + C VLQ+ + + K++++I
Sbjct: 250 QKFFEY--GEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHV 307
Query: 680 GRHLAQDPFGNYVVQYIIELKIPS----VSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
+D GN+VVQ IE P + LL Y +S + VV++CL+H
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIY-EMSVDPYGCRVVQRCLEH 366
Query: 736 FGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSP 795
S+++ V + F+++ + + NYV+Q + G ++ R NL
Sbjct: 367 CSPSQTKPVIGQIH-KRFDEIANNQYGNYVVQHVIE--HGSEEDRMVIVTRVSNNL--FE 421
Query: 796 YCKRIFSRNISKK 808
+ +S N+ +K
Sbjct: 422 FATHKYSSNVIEK 434
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 366 (133.9 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 88/318 (27%), Positives = 166/318 (52%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+ KDQ+G RF+QR + ++IF+E+ D +EL + FGNY++QK
Sbjct: 538 DIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFE 597
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
++ Q + V + G + ++ L Y RV+QK +E + + Q++ LV L L
Sbjct: 598 FGSKIQKNTL---VDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELV-LELSDSVLQ 653
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+IKD NGNHV+Q+ ++ + E ++ + ++TH +GC V+QR +
Sbjct: 654 MIKDQNGNHVIQKAIETIPIE--KLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSED 711
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIEL------KIPSVSANLLSQFKGHYVHLSTQ 722
++ ++ E+ +L QD +GNYV+QY+++ ++ + ++ + V S
Sbjct: 712 QESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKH 771
Query: 723 KFSSHVVEKCLKHFGESRSQ-IVHELLS-----VPHFEQ------LLQDPFANYVIQCAL 770
KF+S+VVEK + + +++ I+ ++L + E +++D FANYVIQ +
Sbjct: 772 KFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 831
Query: 771 SVTKGPLHASLIEAARRH 788
+V++G ++ A R +
Sbjct: 832 NVSEGEGKKLIVIAIRAY 849
Score = 177 (67.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 55/181 (30%), Positives = 86/181 (47%)
Query: 627 SNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQD 686
SN + + F + +FC D QHG +QR +A S ++ + EI + L+ D
Sbjct: 530 SNSNMSLKDIFGHSLEFCKD----QHGSRFIQRELATSPASEKEVIFNEIRDDAIELSND 585
Query: 687 PFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGES-RSQIVH 745
FGNYV+Q E L+ QFKG+ LS Q ++ V++K L++ + R ++V
Sbjct: 586 VFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVL 645
Query: 746 ELLSVPHFEQLLQDPFANYVIQCALS---VTKGPLHASLIEAARRHTNLRTSPYCKRIFS 802
EL Q+++D N+VIQ A+ + K P S + H L T Y R+
Sbjct: 646 ELSD--SVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYH--LSTHSYGCRVIQ 701
Query: 803 R 803
R
Sbjct: 702 R 702
Score = 139 (54.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 51/201 (25%), Positives = 95/201 (47%)
Query: 488 ADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLL 547
+ + G+IY ++ GCR +QR+ + G+ D + I +E+ D I L+ +Q+GNY++Q +L
Sbjct: 681 SSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVL 740
Query: 548 --NVCTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
+ T ++M I + E +V + + + VV+K I ++ Q L+ + + P
Sbjct: 741 QQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSI-LYGSKNQKDLIISKILP 799
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVD-IATHQHGCCVLQRCIAH 663
+D N H L L ++ + + D A + + + G ++ I
Sbjct: 800 ------RDKN--HALN-----LEDDSPMILMIKDQFANYVIQKLVNVSEG--EGKKLIVI 844
Query: 664 SIGRHRDKLITEISKNGRHLA 684
+I + DKL S RHLA
Sbjct: 845 AIRAYLDKLNKSNSLGNRHLA 865
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 355 (130.0 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 84/262 (32%), Positives = 143/262 (54%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G+ KDQ+G RF+Q+ E T + + IF+E+ + ELM + FGNY++QK
Sbjct: 584 DIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFE 643
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
T Q ++LL G + + L YG RVVQ+ +E + Q+ +++ LK L
Sbjct: 644 YGTTTQK-QVLL--ESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEE-LKDHILI 699
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
KD NGNHV+Q+ ++ + Y+ + ++TH +GC V+QR + +S
Sbjct: 700 CCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQI-YHLSTHPYGCRVIQRLLEYSDIDD 758
Query: 669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
+ ++++++ +L D +GNYV+Q+I+E +L G V S KF+S+V
Sbjct: 759 QKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNV 818
Query: 729 VEKCLKHFGE--SRSQIVHELL 748
+EKC+K FG+ R +I+HE++
Sbjct: 819 IEKCIK-FGDINQRKRILHEVM 839
Score = 151 (58.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 44/203 (21%), Positives = 100/203 (49%)
Query: 567 GQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCL 626
G + + +G+R +Q+ + ++ ++ + + +L+ D+ GN+V+Q+ +
Sbjct: 587 GHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISY-ELMTDVFGNYVIQKYFEYG 645
Query: 627 SNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQD 686
+ +V L ++ +++ +GC V+QR + + ++I E+ + +D
Sbjct: 646 TTTQKQVLL--ESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKD 703
Query: 687 PFGNYVVQYIIE-LKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFG-ESRSQIV 744
GN+V+Q IE +K S +L+ HLST + V+++ L++ + + I+
Sbjct: 704 QNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLIL 763
Query: 745 HELLSVPHFEQLLQDPFANYVIQ 767
+L + ++ L+ D + NYVIQ
Sbjct: 764 SQLNNFLYY--LILDQYGNYVIQ 784
Score = 44 (20.5 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 756 LLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNI 805
+++D F NYVIQ + G LI ++ +L ++ RNI
Sbjct: 865 MVKDQFGNYVIQKLVEAFDGDERKLLIIKIKKCLSLSSNNLASIRNIRNI 914
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 360 (131.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 88/254 (34%), Positives = 146/254 (57%)
Query: 493 YIYSMAKDQNGCRFLQRVFDEGTFLDL--QIIFDEVIDHIVELMMEQFGNYLVQKLLNVC 550
YI +A DQ GCRFLQ+ + + ++ ++++++ ++L+++ FGNYLVQKL +
Sbjct: 215 YI-KLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYL 273
Query: 551 TEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF---- 606
T EQ T LL+ T P + ++ +N YGTR +QK+I+T+ Q+ L+ F
Sbjct: 274 TAEQKT--LLIQTIYPN-VFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIE 330
Query: 607 --LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKF--CVDIATHQHGCCVLQRCIA 662
+ LI DLNGNHV+Q+C+ S ++ DA + + I+TH+HGCCVLQ+ ++
Sbjct: 331 QVVTLINDLNGNHVIQKCIFKFS--PSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLS 388
Query: 663 HSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPS--VSANLLSQFKGHYVHLS 720
+ K+ +I + L D FGNY++Q+++++K + A L ++ LS
Sbjct: 389 VCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLS 448
Query: 721 TQKFSSHVVEKCLK 734
KFSS+VVEK +K
Sbjct: 449 CLKFSSNVVEKFIK 462
Score = 37 (18.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 11 GQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFA 57
GQ ++ Q+A + + + + L M N T N + SF+
Sbjct: 52 GQMNNKRNHQKAHSLDLSGFNQFISSTQSPLALMNNTSTSNSANSFS 98
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 349 (127.9 bits), Expect = 2.5e-28, P = 2.5e-28
Identities = 97/323 (30%), Positives = 165/323 (51%)
Query: 468 GQSLMDIRCPLHXXXXXXXXADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVI 527
G L D R LH D+ G+I + DQ G RFLQ+ + + +F E++
Sbjct: 440 GPVLADFR--LHGKNKRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREIL 497
Query: 528 DHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEP-GQLVRVCLNTYGTRVVQKLI 586
+ ++L + FGNY+ QKL + Q M+TE+ ++V++ L+ YG RVVQK +
Sbjct: 498 PNFLQLAQDIFGNYVAQKLYEHGNQTQKK----MMTEDMRSKVVKLSLSPYGCRVVQKAL 553
Query: 587 ETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVD 646
E + T QQ LV+ ++P L+ ++ +GNHV+Q+ + + + + + D+
Sbjct: 554 EHVLTDQQAWLVRE-IQPQVLECVESQHGNHVIQKVFEYVPTQYTKGLV--DSFRGQVER 610
Query: 647 IATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSA 706
+TH +GC V+QR + R ++ EI L +D +GNYV+Q+II+ +
Sbjct: 611 QSTHSYGCRVIQRMLEFCEDVDRRFILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRS 670
Query: 707 NLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQ-IVHELLSVP--HFEQLLQ---DP 760
++ K + S KF+S+VVEK ++ E++ Q I+ L + H QL++ D
Sbjct: 671 FMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQ 730
Query: 761 FANYVIQCALSVTKGPLHASLIE 783
+ NYV Q L G A+L++
Sbjct: 731 YGNYVFQKVLGHLSGVERAALVD 753
Score = 182 (69.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 63/255 (24%), Positives = 116/255 (45%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQI-IFDEVIDHIVELMMEQFGNYLVQKLL 547
D+R + ++ GCR +Q+ E D Q + E+ ++E + Q GN+++QK+
Sbjct: 531 DMRSKVVKLSLSPYGCRVVQKAL-EHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVF 589
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
Q T+ L V GQ+ R ++YG RV+Q+++E + + + A ++
Sbjct: 590 EY-VPTQYTKGL--VDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDR-RFILAEIRACAP 645
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
LI+D GN+V+Q +Q S E+ + + + + + H+ V+++ I
Sbjct: 646 RLIEDQYGNYVIQHIIQ--SGEEEDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEA 703
Query: 668 HRDKLITEIS-KNGRHLAQ------DPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLS 720
R +IT ++ K H Q D +GNYV Q ++ A L+ + K VHL
Sbjct: 704 QRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDRIKPLLVHLK 763
Query: 721 TQKFSSHV--VEKCL 733
+ +EK +
Sbjct: 764 KSNCGKQIAAIEKLI 778
Score = 39 (18.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 GQKY-QEKIEQRAEKEEKRVIKE 32
G ++ Q+KIE E+ RV +E
Sbjct: 473 GSRFLQQKIETANSDEKDRVFRE 495
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 309 (113.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 79/262 (30%), Positives = 138/262 (52%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
D+ G++ ++DQ+G RF+Q+ + T + Q++F E++ +LM + FGNY++QK
Sbjct: 842 DLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFE 901
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV-SLVKAALKPGFL 607
+ +Q L + T G ++ + L YG RV+QK +E++ + QQV S + L L
Sbjct: 902 FGSADQK---LALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVL 958
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
+KD NGNHV+Q+C++C+ + + DA ++TH +GC V+QR + H
Sbjct: 959 KCVKDQNGNHVVQKCIECV--QPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQE 1016
Query: 668 HRDKLITEISKNGRHLAQDPFGNYVVQYIIELK-IPSVSANLLSQFKGHYVHLSTQKFSS 726
++ E+ ++ L Q N VQ + K + S +LL FK Y +
Sbjct: 1017 QTLPILEELHQHSEQLGQK---NTSVQLKVTFKGLRICSFDLL--FKDQY--------GN 1063
Query: 727 HVVEKCLKHFG-ESRSQIVHEL 747
+V++ L+H E +S+IV E+
Sbjct: 1064 YVIQHVLEHGRPEDKSKIVAEV 1085
Score = 217 (81.4 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 76/322 (23%), Positives = 146/322 (45%)
Query: 495 YSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQ 554
Y + D G +Q+ F+ G+ + + H++ L ++ +G ++QK L + +Q
Sbjct: 884 YQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 943
Query: 555 MTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLN 614
I +V E G +++ + G VVQK IE ++ Q + + A + L
Sbjct: 944 QV-ISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQP-QALQFIIDAFQGQVFVLSTHPY 1001
Query: 615 GNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLIT 674
G V+QR L+ + E L HQH + +G+ +
Sbjct: 1002 GCRVIQRILEHCTQEQTLPILE-----------ELHQH---------SEQLGQKNTSVQL 1041
Query: 675 EISKNGRHLA------QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
+++ G + +D +GNYV+Q+++E P + ++++ +G + LS KF+S+V
Sbjct: 1042 KVTFKGLRICSFDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNV 1101
Query: 729 VEKCLKHFGES-RSQIVHELLSV---PH--FEQLLQDPFANYVIQCALSVTKGPLHASLI 782
VEKC+ H + R+ ++ E+ PH +++D +ANYV+Q + + + ++
Sbjct: 1102 VEKCVIHSSRAERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIM 1161
Query: 783 EAARRH-TNLRTSPYCKRIFSR 803
R H LR Y K I ++
Sbjct: 1162 HKIRPHIATLRKYTYGKHILAK 1183
Score = 205 (77.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 69/263 (26%), Positives = 122/263 (46%)
Query: 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
++ G++ KDQNG +Q+ + LQ I D + L +G ++Q++L
Sbjct: 952 ELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILE 1011
Query: 549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
CT+EQ IL EE L+ + ++ QK T Q+ + L+ D
Sbjct: 1012 HCTQEQTLPIL----EE--------LHQHSEQLGQK-----NTSVQLKVTFKGLRICSFD 1054
Query: 609 LI-KDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGR 667
L+ KD GN+V+Q L+ ED + + K ++ H+ V+++C+ HS
Sbjct: 1055 LLFKDQYGNYVIQHVLEHGRPEDKSK-IVAEVRGKVLA-LSQHKFASNVVEKCVIHSSRA 1112
Query: 668 HRDKLITEI--SKNGRHLA-----QDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLS 720
R LI E+ K+G H A +D + NYVVQ +I++ P+ ++ + + H L
Sbjct: 1113 ERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIATLR 1172
Query: 721 TQKFSSHVVEKCLKHFGESRSQI 743
+ H++ K K++ +S S +
Sbjct: 1173 KYTYGKHILAKLEKYYMKSGSDL 1195
Score = 165 (63.1 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 52/203 (25%), Positives = 103/203 (50%)
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
L + + PG +V + +G+R +Q+ +E + ++ + L+ + L+ D+ GN+V+
Sbjct: 838 LQLRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEILQAAY-QLMTDVFGNYVI 896
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISK- 678
Q+ + + D ++ L + +A +GC V+Q+ + SI + ++I++I +
Sbjct: 897 QKFFE-FGSADQKLALATRIRGHV-LPLALQMYGCRVIQKAL-ESISSDQ-QVISDIVRE 952
Query: 679 -NGRHL--AQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735
+G L +D GN+VVQ IE P ++ F+G LST + V+++ L+H
Sbjct: 953 LDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEH 1012
Query: 736 FGESRSQIVHELLSVPHFEQLLQ 758
+ ++ + E L H EQL Q
Sbjct: 1013 CTQEQTLPILEELH-QHSEQLGQ 1034
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 268 (99.4 bits), Expect = 3.6e-22, P = 3.6e-22
Identities = 64/205 (31%), Positives = 109/205 (53%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCT 551
G+I ++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK +
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 552 EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQV--SLVKAALKPGFLDL 609
EQ L + G ++ + L YG RV+QK +E + + QQV +V+ L L
Sbjct: 62 LEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRE-LDGHVLKC 117
Query: 610 IKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669
+KD NGNHV+Q+C++C+ + + DA Q+G V+Q + H +
Sbjct: 118 VKDQNGNHVVQKCIECV--QPQSLQFIIDAFK------GQDQYGNYVIQHVLEHGRPEDK 169
Query: 670 DKLITEISKNGRHLAQDPFGNYVVQ 694
K++ EI N L+Q F + VV+
Sbjct: 170 SKIVAEIRGNVLVLSQHKFASNVVE 194
Score = 210 (79.0 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 61/231 (26%), Positives = 117/231 (50%)
Query: 529 HIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIET 588
HI+E +Q G+ +Q L T + + + + QL+ ++ +G V+QK E
Sbjct: 3 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM---VDVFGNYVIQKFFEF 59
Query: 589 LKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNED---NEVYLFFDAAAKFCV 645
Q+++L + ++ L L + G V+Q+ L+ + ++ NE+ D CV
Sbjct: 60 GSLEQKLALAER-IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCV 118
Query: 646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVS 705
Q+G V+Q+CI + + I + K QD +GNYV+Q+++E P
Sbjct: 119 K---DQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-----QDQYGNYVIQHVLEHGRPEDK 169
Query: 706 ANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGES-RSQIVHELLSV---PH 752
+ ++++ +G+ + LS KF+S+VVEKC+ H + R+ ++ E+ ++ PH
Sbjct: 170 SKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH 220
Score = 123 (48.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 38/151 (25%), Positives = 80/151 (52%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFL--DLQIIFDEV--ID-HIVELMMEQFGNYLVQ 544
+RG++ S+A GCR +Q+ + F+ D Q+I + V +D H+++ + +Q GN++VQ
Sbjct: 72 IRGHVLSLALQMYGCRVIQKALE---FIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQ 128
Query: 545 KLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP 604
K + C + Q + ++ + GQ + YG V+Q ++E + + +V A ++
Sbjct: 129 KCIE-CVQPQSLQFIIDAFK--GQ------DQYGNYVIQHVLEHGRPEDKSKIV-AEIRG 178
Query: 605 GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYL 635
L L + ++V+++C+ S + V +
Sbjct: 179 NVLVLSQHKFASNVVEKCVTHASRTERAVLI 209
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 232 (86.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 58/225 (25%), Positives = 118/225 (52%)
Query: 532 ELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKT 591
E +Q G+ +Q L T + + + + QL+ ++ +G V+QK E
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM---VDVFGNYVIQKFFEFGSL 58
Query: 592 RQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQ 651
Q+++L + ++ L L + G V+Q+ L+ + + D +V+ ++TH
Sbjct: 59 EQKLALAER-IRGHVLSLALQMYGCRVIQKALEFIPS-DQQVFA-----------LSTHP 105
Query: 652 HGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQ 711
+GC V+QR + H + ++ E+ ++ L QD +GNYV+Q+++E P + ++++
Sbjct: 106 YGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAE 165
Query: 712 FKGHYVHLSTQKFSSHVVEKCLKHFGES-RSQIVHELLSV---PH 752
+G+ + LS KF+S+VVEKC+ H + R+ ++ E+ ++ PH
Sbjct: 166 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPH 210
Score = 197 (74.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 55/198 (27%), Positives = 98/198 (49%)
Query: 498 AKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTR 557
++DQ+G RF+Q + T + Q++F+E++ +LM++ FGNY++QK + EQ
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK-- 61
Query: 558 ILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNH 617
L + G ++ + L YG RV+QK +E + + QQV + P G
Sbjct: 62 -LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVFALST--HP---------YGCR 109
Query: 618 VLQRCLQ-CLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEI 676
V+QR L+ CL ++ + + + + Q+G V+Q + H + K++ EI
Sbjct: 110 VIQRILEHCLPDQTLPI---LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEI 166
Query: 677 SKNGRHLAQDPFGNYVVQ 694
N L+Q F + VV+
Sbjct: 167 RGNVLVLSQHKFASNVVE 184
Score = 131 (51.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 43/192 (22%), Positives = 87/192 (45%)
Query: 495 YSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQ 554
Y + D G +Q+ F+ G+ + + + H++ L ++ +G ++QK L +Q
Sbjct: 37 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 96
Query: 555 MTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLN 614
Q+ + + YG RV+Q+++E Q + +++ L L++D
Sbjct: 97 -------------QVFALSTHPYGCRVIQRILEHCLPDQTLPILEE-LHQHTEQLVQDQY 142
Query: 615 GNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLIT 674
GN+V+Q L+ ED + + V ++ H+ V+++C+ H+ R LI
Sbjct: 143 GNYVIQHVLEHGRPEDKSK-IVAEIRGNVLV-LSQHKFASNVVEKCVTHASRTERAVLID 200
Query: 675 EIS--KNGRHLA 684
E+ +G H A
Sbjct: 201 EVCTMNDGPHSA 212
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 238 (88.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 72/325 (22%), Positives = 159/325 (48%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEE 553
IY + +NGC ++ + E + +II + ++ + L + +G+Y+ Q + ++ E+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 554 QMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDL 613
R + L L+TYG R++QK +E+L + + K L+ + I
Sbjct: 259 YKERFTDEFLKHTSFLT---LHTYGCRLIQKSLESLSDEYKCKIFKE-LQEDLIKYICHQ 314
Query: 614 NGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DK 671
NGNHV+Q+C++ L + + + + ++ +++H +GC ++QR + IG + ++
Sbjct: 315 NGNHVIQKCVEVLPC--SYIDIIINIIEEYLPFLSSHAYGCRIVQRI--YEIGNEQQINR 370
Query: 672 LITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731
L +I K HL ++ +GNYV+Q E ++ + + LS+ K++ +++EK
Sbjct: 371 LNEQIIKK-IHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Query: 732 CL-KHFGESRSQIVHELLS-----VPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAA 785
L K + + +I+ ++++ + + +D + N+++Q L+ + +I+
Sbjct: 430 ILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTI 489
Query: 786 RRHTN-LRTSPYCKRIFS--RNISK 807
+ + L+ Y K I N+ K
Sbjct: 490 IENLDKLKDETYGKYILRAINNLEK 514
Score = 137 (53.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/150 (22%), Positives = 75/150 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+ Y+ ++ GCR +QR+++ G + + +++I I L+ ++GNY++QK
Sbjct: 339 IEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQK---- 393
Query: 550 CTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL------ 602
C E I ++T+E + ++ + Y +++K++ + + + ++K +
Sbjct: 394 CFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDG 453
Query: 603 KPGFLDLIKDLNGNHVLQRCLQ-CLSNEDN 631
K +++ KD GN ++Q+ L C E N
Sbjct: 454 KDNIINICKDCYGNFMMQKLLTTCRKKERN 483
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 238 (88.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 72/325 (22%), Positives = 159/325 (48%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEE 553
IY + +NGC ++ + E + +II + ++ + L + +G+Y+ Q + ++ E+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 554 QMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDL 613
R + L L+TYG R++QK +E+L + + K L+ + I
Sbjct: 259 YKERFTDEFLKHTSFLT---LHTYGCRLIQKSLESLSDEYKCKIFKE-LQEDLIKYICHQ 314
Query: 614 NGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR--DK 671
NGNHV+Q+C++ L + + + + ++ +++H +GC ++QR + IG + ++
Sbjct: 315 NGNHVIQKCVEVLPC--SYIDIIINIIEEYLPFLSSHAYGCRIVQRI--YEIGNEQQINR 370
Query: 672 LITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731
L +I K HL ++ +GNYV+Q E ++ + + LS+ K++ +++EK
Sbjct: 371 LNEQIIKK-IHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Query: 732 CL-KHFGESRSQIVHELLS-----VPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAA 785
L K + + +I+ ++++ + + +D + N+++Q L+ + +I+
Sbjct: 430 ILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTI 489
Query: 786 RRHTN-LRTSPYCKRIFS--RNISK 807
+ + L+ Y K I N+ K
Sbjct: 490 IENLDKLKDETYGKYILRAINNLEK 514
Score = 137 (53.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/150 (22%), Positives = 75/150 (50%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
+ Y+ ++ GCR +QR+++ G + + +++I I L+ ++GNY++QK
Sbjct: 339 IEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQK---- 393
Query: 550 CTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL------ 602
C E I ++T+E + ++ + Y +++K++ + + + ++K +
Sbjct: 394 CFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDG 453
Query: 603 KPGFLDLIKDLNGNHVLQRCLQ-CLSNEDN 631
K +++ KD GN ++Q+ L C E N
Sbjct: 454 KDNIINICKDCYGNFMMQKLLTTCRKKERN 483
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 63/248 (25%), Positives = 118/248 (47%)
Query: 530 IVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETL 589
+ LM + G +++++ + ++ R+ ++T + + + +G+R VQKL+
Sbjct: 45 LFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 590 KTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIAT 649
K+ + AA+ FL + D ++V R + + ++ +D+A
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKA--LYERILYHALDLAC 160
Query: 650 HQHGCCVLQRCIAHSIGRH-RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANL 708
QHGC L I + + RD+L+ ++ N L+ D GN+VVQ+++ L N+
Sbjct: 161 DQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNI 220
Query: 709 LSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVP--HFEQLLQDPFANYVI 766
G + LS +K+ S++VEK L+ ES +V ELL +L ++ F N+V+
Sbjct: 221 AVNLYGQCIELSFKKYGSYIVEKLLE-VEESMVVVVVELLGCDGDRLMRLARNEFGNFVV 279
Query: 767 QCALSVTK 774
AL TK
Sbjct: 280 VKALRFTK 287
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 209 (78.6 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 63/248 (25%), Positives = 117/248 (47%)
Query: 530 IVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETL 589
+ LM + G +++++ + ++ R+ ++T + + + +G+R VQKL+
Sbjct: 45 LFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLG-- 102
Query: 590 KTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIAT 649
K+ + AA+ FL + D ++V R + + ++ +D+A
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKA--LYERILYHALDLAC 160
Query: 650 HQHGCCVLQRCIAHSIGRH-RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANL 708
QHGC L I + + RD+L+ + N L+ D GN+VVQ+++ L N+
Sbjct: 161 DQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNI 220
Query: 709 LSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVP--HFEQLLQDPFANYVI 766
G + LS +K+ S++VEK L+ ES +V ELL +L ++ F N+V+
Sbjct: 221 AVNLYGQCIELSFKKYGSYIVEKLLE-VEESMVVVVVELLGCDGDRLMRLARNEFGNFVV 279
Query: 767 QCALSVTK 774
AL TK
Sbjct: 280 VKALRFTK 287
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 213 (80.0 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 77/291 (26%), Positives = 138/291 (47%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDL-QIIFDEVIDH---IVELMMEQFGNYLVQKLLNV 549
+ A D+NGCRFLQ + + D+ Q +F ++++ + L FGN+ VQ++L
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLE- 207
Query: 550 CTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C+ + IL TE L +CL+ RV+Q I+ L L L+ +L
Sbjct: 208 CSNTEEQEIL---TEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRL-SLELRDTYLV 263
Query: 609 LIK-DLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQ--------- 658
+ D NGNHV+Q+ ++ L + F A + + ++GC V+Q
Sbjct: 264 RLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSD 323
Query: 659 ---RCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIEL-KIPSVSANLLSQ--F 712
C + R L++ +++N LA + F NYVVQ++I+ +V +++ +
Sbjct: 324 TYAECYQQRVVLLRS-LMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCL 382
Query: 713 KGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFAN 763
+ + +S +K++SHVVE FG + ++ E+++ FE + P N
Sbjct: 383 LQNLLSMSQEKYASHVVEVA---FGCAPCRLAAEMMN-EIFEGYIPHPDTN 429
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 211 (79.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 77/290 (26%), Positives = 135/290 (46%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDL-QIIFDEVIDH---IVELMMEQFGNYLVQKLLNV 549
+ A D+NGCRFLQ + D+ Q +F ++++ + L FGN+ VQ++L
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLE- 204
Query: 550 CTEEQMTRILLMVTEEPG-QLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C+ + IL TE L +CL+ RV+Q I+ L L +
Sbjct: 205 CSNTEEQEIL---TEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVR 261
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQ---------- 658
L D NGNHV+Q+ ++ L + F A + + ++GC V+Q
Sbjct: 262 LSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQ 321
Query: 659 --RCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIEL-KIPSVSANLLSQ--FK 713
+C H + R L+ +++N LA + F NYVVQ++I+ +V +++ +
Sbjct: 322 YAQCYQHRVILLRS-LMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLL 380
Query: 714 GHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFAN 763
+ + +S +K++SHVVE F + ++V E+++ FE + P N
Sbjct: 381 QNLLSMSQEKYASHVVEVA---FECAPYRLVAEMMN-EIFEGYIPHPDTN 426
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 211 (79.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 77/290 (26%), Positives = 135/290 (46%)
Query: 494 IYSMAKDQNGCRFLQRVFDEGTFLDL-QIIFDEVIDH---IVELMMEQFGNYLVQKLLNV 549
+ A D+NGCRFLQ + D+ Q +F ++++ + L FGN+ VQ++L
Sbjct: 146 LVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNMFGNFFVQRVLE- 204
Query: 550 CTEEQMTRILLMVTEEPG-QLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
C+ + IL TE L +CL+ RV+Q I+ L L +
Sbjct: 205 CSNTEEQEIL---TEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTHLVR 261
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQ---------- 658
L D NGNHV+Q+ ++ L + F A + + ++GC V+Q
Sbjct: 262 LSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVETLSTDQ 321
Query: 659 --RCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIEL-KIPSVSANLLSQ--FK 713
+C H + R L+ +++N LA + F NYVVQ++I+ +V +++ +
Sbjct: 322 YAQCYQHRVILLRS-LMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLL 380
Query: 714 GHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFAN 763
+ + +S +K++SHVVE F + ++V E+++ FE + P N
Sbjct: 381 QNLLSMSQEKYASHVVEVA---FECAPYRLVAEMMN-EIFEGYIPHPDTN 426
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 199 (75.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 63/257 (24%), Positives = 121/257 (47%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQ-IIFDEVIDH---IVELMMEQFGNYLVQKLL 547
G + A D+ G +FL+R F E ++ ++FD++ + L GN+++QK +
Sbjct: 151 GSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGNFIIQKFV 210
Query: 548 NVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFL 607
T ++ R++ + + G L+ +CL+ + RVVQ I+ + LV+ FL
Sbjct: 211 EHATLDEQERLVRKMCDN-G-LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFL 268
Query: 608 DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI------ 661
L D HVLQ+ ++ L ++ F + + ++GC ++Q+ I
Sbjct: 269 PLCTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDN 328
Query: 662 --AHSIGRHRDKL---ITEISKNGRHLAQDPFGNYVVQYIIELK-IPSVSANLLSQ--FK 713
H L +T +++N L+ + F NYVVQY+I+ + + + + +
Sbjct: 329 PKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLL 388
Query: 714 GHYVHLSTQKFSSHVVE 730
+ + +S K++SHVVE
Sbjct: 389 RNILSMSQDKYASHVVE 405
Score = 56 (24.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 238 VSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLC--LNHSND-FRFGP 294
+SD G +S + S S D + + L+ F G + G SN L + N F++ P
Sbjct: 1 MSDSTGRINSKASDSSSISDHQTADLSIFNGSFDGGAFSSSNIPLFNFMGTGNQRFQYSP 60
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 207 (77.9 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/260 (24%), Positives = 120/260 (46%)
Query: 537 QFGNYLVQKLLNVCTEEQMTRILLM---VTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQ 593
+F YL Q L T E+ + + + +T + + N YG++ ++ L +
Sbjct: 229 EFQKYL-QDLDTYPTAERESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLD 287
Query: 594 QVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHG 653
L+ A+ F L+ D G ++ ++ + E + ++ + +A + G
Sbjct: 288 H--LLFCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKES--LYKLTYEYTLHLARLETG 343
Query: 654 CCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFK 713
C L + G +RD + ++ N L+ DP+G +VVQ I+ L+ P + + + +
Sbjct: 344 CLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLR 403
Query: 714 GHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELL-SVPHFEQLLQDPFANYVIQCALSV 772
G + L+ ++ S+VVEKCLK +R Q++ E + + ++ D F N+V+Q AL V
Sbjct: 404 GSFFRLAMERQGSYVVEKCLKS-DFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRV 462
Query: 773 TKG----PLHASLIEAARRH 788
K PL +E R H
Sbjct: 463 MKEKEMRPLLREFVEKLRPH 482
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 198 (74.8 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 54/224 (24%), Positives = 114/224 (50%)
Query: 561 MVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQ 620
++T + + + N G++ +QKL+ + V +A ++ F+ ++ D ++V
Sbjct: 79 LMTSDCDYFMVITTNKNGSKTLQKLMG-MSDDMDVFFFEAIMRL-FIHVMTDKYASYVTI 136
Query: 621 RCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAH-SIGRHRDKLITEISKN 679
+ ++ + E L +D ++ +A Q+GC L I +RD+L+ ++ N
Sbjct: 137 QGMRVFQQDKRE--LMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANN 194
Query: 680 GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGES 739
L+ D +GN+VVQ++++L+ + N+ + G+ V LS +K+ S++VE+ L+
Sbjct: 195 ALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVP 254
Query: 740 RSQIVHELLS--VPHFEQLLQDPFANYVIQCALSVTKGPLHASL 781
+ +V +LL+ +L + + N+V+ AL +T L A L
Sbjct: 255 MATVVLDLLACKTEMLIRLARSEYGNFVVCKALELTNEILTADL 298
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 184 (69.8 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 75/318 (23%), Positives = 148/318 (46%)
Query: 497 MAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMT 556
++ DQ FLQ+ ++ Q I D +I I LM+ +FGN+LVQ+ T Q+
Sbjct: 369 VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIR 428
Query: 557 RILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDL---IKDL 613
+ M + G ++++ + +G VVQK I+ + + + L A + FL + I
Sbjct: 429 Q---MGSAMLGNMLKLATDPFGCHVVQKAIDNVT--EDIKL--AMMDELFLTIDVTIMHH 481
Query: 614 NGNHVLQRCLQCLSNED--NEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK 671
HV Q+ + E N + +A ++A ++G V+Q + + + + +
Sbjct: 482 YACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRE 541
Query: 672 LITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731
I EI + +A+ +GN+VVQ+++E ++ V S +F+S V+EK
Sbjct: 542 CIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEK 601
Query: 732 CLKHFGESRSQIVHELLSVPHFEQLLQ-------DPFANYVIQCALSVTKGPLHASL-IE 783
+K ++ + + ++ ++ Q D + NY+IQ + + + P +L I
Sbjct: 602 AIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQ-PAEKNLVIT 660
Query: 784 AARRH-TNLRTSPYCKRI 800
++H +LR S Y +++
Sbjct: 661 HIKKHMVSLRGSKYGQKV 678
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 182 (69.1 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 61/232 (26%), Positives = 113/232 (48%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQI--IFDEVI---DHIVELMMEQFGNYLVQKL 546
G + A D+ GC+FL++ +G+ Q +F++VI D ++L FGNYLVQ +
Sbjct: 192 GDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSV 250
Query: 547 LNVC---TEEQMT-RILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL 602
+ + ++ T R + Q+ +CL+ + RV+Q ++ + LV+A
Sbjct: 251 IGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 310
Query: 603 KPGFLDLI-KDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI 661
+ L I D N NHV+Q+ + + ++ E + F A + I + ++GC V+Q I
Sbjct: 311 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTII 370
Query: 662 ----AHSIG----------RHR--DKLITEISKNGRHLAQDPFGNYVVQYII 697
A S+ R R +L+T ++ + LA + + NY++Q+I+
Sbjct: 371 EKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 422
Score = 124 (48.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 32/118 (27%), Positives = 62/118 (52%)
Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQ--FKGHYVHLSTQKF 724
R +L+T ++ + LA + + NY++Q+I+ +V + + + + LS +KF
Sbjct: 392 RALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKF 451
Query: 725 SSHVVEKCLKHFG-ESRSQIVHELLS--VPH-------FEQLLQDPFANYVIQCALSV 772
+SHVVEK H E ++++ E+ +PH + ++ F NYV+QC L++
Sbjct: 452 ASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTI 509
Score = 47 (21.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 146 LWDAKSTDSCFHRGNVNDALDY 167
+WD S + F N+ND ++Y
Sbjct: 42 MWDFNSLNPYFSMLNMNDGINY 63
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 179 (68.1 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 61/268 (22%), Positives = 123/268 (45%)
Query: 505 RFLQRVFDEGTFL--DLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMV 562
R +++ D G + ++++I ++D + EL + GN +VQK C++ +L +
Sbjct: 169 REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERI 228
Query: 563 TEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRC 622
P L + ++ GT QK+I+ T +Q+ L+ L+P L D GN+V Q C
Sbjct: 229 A--P-YLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCC 285
Query: 623 LQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK--LITEISKNG 680
L+ +LF + A+ C +I + G ++ C+ + + ++ I N
Sbjct: 286 LRF--KYPKNTFLF-EVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINS 342
Query: 681 RHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLS-TQKFSSHVVEKCLKHFGES 739
LA + G ++ ++++ LL+ ++H + T K +S ++ K + + E
Sbjct: 343 HLLATNSNGMLLLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEP 402
Query: 740 RSQIVHELLSVPHFEQLLQDPFANYVIQ 767
S+ + LL F + +D Y++Q
Sbjct: 403 ESRNL--LLKNLFFSE--KDNVLTYILQ 426
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 182 (69.1 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 63/242 (26%), Positives = 116/242 (47%)
Query: 526 VIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKL 585
++ I EL + GN +VQKL +E RIL+ + G+ + ++ GT QK+
Sbjct: 681 MLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAPHLGE---IGVHKNGTWAAQKI 737
Query: 586 IETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV 645
I+ KT Q+ ++ AL+P + L D GN+VLQ CL+ S ++ V F+
Sbjct: 738 IDVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLRFGSPYNDFV---FETMLSRMW 794
Query: 646 DIATHQHGCCVLQRCI-AHSIGRHRDKLITE-ISKNGRHLAQDPFGNYVVQYIIEL-KIP 702
+IA + G ++ C+ +H + + +++ I+ + LA + G ++ + ++ P
Sbjct: 795 EIAQGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLATNANGALLLTWFLDTCTFP 854
Query: 703 SVSANLLSQFKGHYVHLSTQKFSSHVVEKCL--KHFGESRSQIVHELLSVPH---FEQLL 757
L + H VHL T K + V K + ++ E+R+ ++ L P E++L
Sbjct: 855 HRRTVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNIVLKALFFSPGDEVLEKIL 914
Query: 758 QD 759
D
Sbjct: 915 SD 916
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 182 (69.1 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 60/232 (25%), Positives = 112/232 (48%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQI--IFDEVI---DHIVELMMEQFGNYLVQKL 546
G + A D+ GC+FL++ +G+ Q +F++VI D ++L FGNY VQ++
Sbjct: 190 GDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEI 248
Query: 547 LNVCT----EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL 602
+ + ++ + R + Q+ +CL+ + RV+Q ++ + LV+A
Sbjct: 249 IGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 308
Query: 603 KPGFLDLI-KDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI 661
+ L I D N NHV+Q+ + + ++ E + F A + I ++GC V+Q I
Sbjct: 309 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTII 368
Query: 662 ----AHSIG----------RHR--DKLITEISKNGRHLAQDPFGNYVVQYII 697
A SI R R +L+T ++ + LA + + NY++Q+I+
Sbjct: 369 EKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 420
Score = 42 (19.8 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 146 LWDAKSTDSCFHRGNVNDALDY 167
+W+ S + F N+ND ++Y
Sbjct: 42 MWNFNSLNPYFSMLNMNDGMNY 63
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 182 (69.1 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 60/232 (25%), Positives = 112/232 (48%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQI--IFDEVI---DHIVELMMEQFGNYLVQKL 546
G + A D+ GC+FL++ +G+ Q +F++VI D ++L FGNY VQ++
Sbjct: 190 GDLMKFAVDKTGCQFLEKAV-KGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEI 248
Query: 547 LNVCT----EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL 602
+ + ++ + R + Q+ +CL+ + RV+Q ++ + LV+A
Sbjct: 249 IGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 308
Query: 603 KPGFLDLI-KDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI 661
+ L I D N NHV+Q+ + + ++ E + F A + I ++GC V+Q I
Sbjct: 309 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTII 368
Query: 662 ----AHSIG----------RHR--DKLITEISKNGRHLAQDPFGNYVVQYII 697
A SI R R +L+T ++ + LA + + NY++Q+I+
Sbjct: 369 EKLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIV 420
Score = 42 (19.8 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 146 LWDAKSTDSCFHRGNVNDALDY 167
+W+ S + F N+ND ++Y
Sbjct: 42 MWNFNSLNPYFSMLNMNDGMNY 63
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 164 (62.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 66/308 (21%), Positives = 131/308 (42%)
Query: 461 DGVICDNGQSLMDIRCPLHXXXXXXXXADV--RGYIYSMAKDQNGCRFLQRVF--DEGTF 516
D I ++G D P DV G + A D +G +FL+ + D
Sbjct: 58 DSYIFNSGSGSSDAETPAPVAPIFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQ 117
Query: 517 LDLQII--FDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCL 574
+ + F E V L + GN++VQKL+ + T + +L + + G L+ +C
Sbjct: 118 IRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMID--GGLLAMCK 175
Query: 575 NTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVY 634
+ + RVVQ ++ L++ + D HV+QR ++ L + +
Sbjct: 176 DKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFF 235
Query: 635 LFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR-----------DKLITEISKNGRHL 683
+ F ++ + + ++GC ++Q+ I + L+T I +N L
Sbjct: 236 VHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRL 295
Query: 684 AQDPFGNYVVQYIIELK--IPSVSANLLSQ-FKGHYVHLSTQKFSSHVVEKCLKHFGESR 740
+ + F NYV+QY+I+ + ++ + + + +S K++SHV+E F +
Sbjct: 296 SSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGA---FLFAP 352
Query: 741 SQIVHELL 748
++HE++
Sbjct: 353 PALLHEMM 360
Score = 121 (47.7 bits), Expect = 0.00064, P = 0.00064
Identities = 67/278 (24%), Positives = 125/278 (44%)
Query: 530 IVELMMEQFGNYLVQKLLNVCTEEQMTRILL-MVTEEPGQLVRVCLNTYGTRVVQKLIET 588
+++ ++ G ++ + +E+Q+ + + TE V +C + G +VQKL+E
Sbjct: 93 LIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVEL 152
Query: 589 LKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLF-----FDAAAKF 643
+Q L++ + G L + KD V+Q LQ + N L FD AA
Sbjct: 153 ATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHS-NVFQLIQELSTFDLAA-M 210
Query: 644 CVD-IATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLA--QDPFGNYVVQYIIEL- 699
C D I+ H V+QR + + +S +A QD +G +VQ +I+
Sbjct: 211 CTDQISIH-----VIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRL 265
Query: 700 ----KIP------SVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFG--ES-RSQIVHE 746
K+P + +L++ + LS+ +F+++V++ +K G E R I+ +
Sbjct: 266 AENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDK 325
Query: 747 LLSVPHFEQLLQDPFANYVIQCA-LSVTKGPLHASLIE 783
L + + + QD +A++VI+ A L LH + E
Sbjct: 326 CL-LRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEE 362
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 173 (66.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 72/314 (22%), Positives = 138/314 (43%)
Query: 500 DQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRIL 559
DQ LQ+ D + + ++ V LM +FGN+L+QK TE Q+
Sbjct: 266 DQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFS 325
Query: 560 LMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVL 619
+ + +L ++ +G+ V+QK +E R +L++ ++ L++ + HV
Sbjct: 326 YFLKKHVKEL---SIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQR-HSCHVW 381
Query: 620 QRCLQCLSNEDNEVYLFFDAAAKFC----VDIATHQHGCCVLQRCIAHSIGRHRDKLITE 675
Q+ + + + V FD K + ++ + G V+Q + + + + E
Sbjct: 382 QKFFE--TRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDE 439
Query: 676 ISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLK- 734
I N + +GN+V+Q+IIE +L+ ST +++S VVE+ L+
Sbjct: 440 IINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRV 499
Query: 735 -H---FGESRSQIVHELLSVP--HFEQLLQDPFANYVIQCALSVTKGPLHASLI-EAARR 787
H F +I +P +++ + + NY++Q L V P +L+ E ++
Sbjct: 500 CHVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVAT-PSQINLMAEHLKK 558
Query: 788 H-TNLRTSPYCKRI 800
H +LR Y +RI
Sbjct: 559 HMVSLRGHKYGQRI 572
Score = 130 (50.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 53/255 (20%), Positives = 119/255 (46%)
Query: 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNV 549
++ ++ ++ D G LQ+ + + +E+I+ + +M++ ++ QK
Sbjct: 328 LKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFET 387
Query: 550 CTEEQMTRILLMVTEE-PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
+ + I ++ G+ ++V ++ G+ VVQ + E K + + + + +
Sbjct: 388 RRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIIN-NMDQ 446
Query: 609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
+I GN V+Q ++ S D + L ++ K +T+++ V++R +
Sbjct: 447 IICGQWGNWVIQHIIEHGSEPDKQRIL--NSLLKEVESYSTNRYASKVVERALRVCHVTF 504
Query: 669 RDKLITEIS--KNG------RHLAQDPFGNYVVQYIIELKIPSVSANLLSQ-FKGHYVHL 719
D+ + EI+ +N + +A + +GNY+VQY++++ PS NL+++ K H V L
Sbjct: 505 FDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPS-QINLMAEHLKKHMVSL 563
Query: 720 STQKFSSHV---VEK 731
K+ + VEK
Sbjct: 564 RGHKYGQRIAALVEK 578
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/129 (20%), Positives = 47/129 (36%)
Query: 103 CCFSEDDASPFSKPNNVLYNDSVENANK----YKTRGGAATDCFNDMLWDAKSTDSCFHR 158
C D P SK N L + N+N + T + D ++++ + F
Sbjct: 120 CNLKNKDTFPVSKNNCSLSSGIFTNSNGTNNCFSTHPKSLDDAKDNVVPKKLNDTDQFPL 179
Query: 159 GNVNDALD-YETGLCE-NLYRMNIGGVGEEHLDHSAKL-KRLDIVDPLGVRFGFTSDASL 215
+ N+ +D + G + + M+ G E LD K L P G F ++
Sbjct: 180 WSKNETIDPIDLGYSFISPFSMSFASKGNEILDPGESTNKNLFYEFPNGTTEPFEKNSVH 239
Query: 216 GGSVGVPYN 224
G + Y+
Sbjct: 240 SGKETLQYS 248
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 161 (61.7 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 60/244 (24%), Positives = 113/244 (46%)
Query: 505 RFLQRVFDEGTFLDLQI--IFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMV 562
R L++ D F DL+I + ++D + EL + GN +VQKL + + + I+L
Sbjct: 595 RELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQKLFEH-SSDIIKDIMLRK 653
Query: 563 TEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRC 622
T + L + ++ GT QK+I T +Q+ V +K LI D GN+V+Q C
Sbjct: 654 TSK--YLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ-C 710
Query: 623 LQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI-AHSIGRHRDKLITE--ISKN 679
+ N+ ++F A F V I +++G ++ C+ AH I ++ I
Sbjct: 711 VLKFGFPWNQ-FIFESIIANFWV-IVQNRYGARAVRACLEAHDIVTPEQSIVLSAMIVTY 768
Query: 680 GRHLAQDPFGNYVVQYIIELKI-PSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGE 738
+L+ + G +V + ++ + P+ + L + V L + +S + K L + G+
Sbjct: 769 AEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTILKVLNYRGD 828
Query: 739 SRSQ 742
++
Sbjct: 829 DNAR 832
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 164 (62.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 56/234 (23%), Positives = 113/234 (48%)
Query: 505 RFLQRVFDEG--TFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMV 562
R +++ D G T +++ I +D + +L + GN +VQKL + C++ +L +
Sbjct: 751 RQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLERI 810
Query: 563 TEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRC 622
P L ++ ++ GT QK+++ T Q+ L+ L+P L D GN+V+Q C
Sbjct: 811 A--P-HLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTC 867
Query: 623 LQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI-AHSIGRHRDKLITE-ISKNG 680
L+ N+ ++F +F V IA ++G ++ C+ + + + L+ I+
Sbjct: 868 LK-FGAPMND-FVFEAILNQFWV-IAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYS 924
Query: 681 RHLAQDPFGNYVVQYIIE-LKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCL 733
HLA + G ++ Y++E + P + L +F V + T + + + + K +
Sbjct: 925 VHLAMNGNGTLLLTYLVENMNYPHIPILLTRRFVQDIVRVCTHRLAYNSLLKII 978
Score = 43 (20.2 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 421 INQAASKGRDSLKGYKQNNLNEIVT 445
I+ ASK S+ QNN N VT
Sbjct: 119 ISSIASKNNSSITSKLQNNSNLSVT 143
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 147 (56.8 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 50/188 (26%), Positives = 92/188 (48%)
Query: 526 VIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKL 585
++D + EL + GN +VQKL + E + + L+MV E L ++ ++ GT +QK+
Sbjct: 13 MLDELPELSYDYLGNTIVQKLFTL-VESSLVK-LMMVKEVAPYLTQLGIHKNGTWAIQKI 70
Query: 586 IETLKTR-QQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFC 644
I + QQ+ L+ A+LKP + L D GN+V+Q C++ + N+ F+A
Sbjct: 71 INLCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIK-FGSPFND--FVFEAMLDNF 127
Query: 645 VDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSV 704
++I+ + G RCI + D T N + L ++++ EL + S
Sbjct: 128 LEISVGRFGA----RCIRTILESCHDSSSTSPVTNEQVLL---VAGLIIEFANELAVNSN 180
Query: 705 SANLLSQF 712
+ L++ +
Sbjct: 181 GSLLITWY 188
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/153 (28%), Positives = 80/153 (52%)
Query: 499 KDQNGCRFLQRVFDEGTFLDL-QIIFDEVI-DHIVEL--MMEQFGNYLVQKLLNVCTEEQ 554
KD+NGCRFLQ + E ++ Q IF++++ D ++ L FGN+ VQ++L C++ +
Sbjct: 164 KDKNGCRFLQDQYSEDCHVESHQKIFEQLVADRVIFLDQCKHMFGNFFVQRVLE-CSDAE 222
Query: 555 MTRILL----------MVTEEPG-QLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALK 603
+I++ + +E G L C++ G V+Q+L++TL LV+ +
Sbjct: 223 EQKIIVEYLAIVLASRLASELRGVDLTHACIDQNGNHVIQQLLKTLPPSSWQFLVEFFSR 282
Query: 604 P-GFLDLIKDLNGNHVLQRCLQCLSNEDNEVYL 635
F+++ +D V+Q L+ LS + V L
Sbjct: 283 DTNFVEVCEDKYVCRVIQSTLETLSKREQLVAL 315
Score = 133 (51.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 56/242 (23%), Positives = 113/242 (46%)
Query: 512 DEGTFLDLQIIFDEVI--DHIVELMMEQFG-NYLVQKLLNVCTEEQMTRILLMVTEEPGQ 568
+ G D + D+VI D ++E M ++ G +L + C E +I + +
Sbjct: 140 EHGNVADT-VTLDDVIQMDSLMEFMKDKNGCRFLQDQYSEDCHVESHQKIFEQLVADRVI 198
Query: 569 LVRVCLNTYGTRVVQKLIETLKTRQQ------VSLVKAALKPGFL---DLIK---DLNGN 616
+ C + +G VQ+++E +Q +++V A+ L DL D NGN
Sbjct: 199 FLDQCKHMFGNFFVQRVLECSDAEEQKIIVEYLAIVLASRLASELRGVDLTHACIDQNGN 258
Query: 617 HVLQRCLQCLSNEDNEVYL-FFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR----DK 671
HV+Q+ L+ L + + FF F V++ ++ C V+Q + R + +
Sbjct: 259 HVIQQLLKTLPPSSWQFLVEFFSRDTNF-VEVCEDKYVCRVIQSTLETLSKREQLVALRR 317
Query: 672 LITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSA--NLLSQ--FKGHYVHLSTQKFSSH 727
L+ I +N LA + F NYVV+++I+ ++ +++ + + + +S +K++SH
Sbjct: 318 LVGVIIRNCGQLASNEFANYVVRHVIKCDDAEMTIYRDVIIEKCLLQNLLSMSQEKYASH 377
Query: 728 VV 729
++
Sbjct: 378 MI 379
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 139 (54.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 65/261 (24%), Positives = 123/261 (47%)
Query: 505 RFLQRVFDEGTF--LDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRIL--L 560
R L++ FD + ++++ + ++D + EL + GN ++QKL E + I+ +
Sbjct: 554 RELRKQFDSNSLSTIEMEQLAIVMLDQLPELSSDYLGNTVIQKLF-----ENSSNIIRDI 608
Query: 561 MVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQ 620
M+ + L + ++ GT V QK+I+ T +Q++LV + + L D GN+V+Q
Sbjct: 609 MLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQ 668
Query: 621 RCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI-AHSIGRHRDKL-ITE-IS 677
L+ N ++F + F I +++G ++ C+ A SI L IT I
Sbjct: 669 GILK-FGFPWNS-FIFESVLSHFWT-IVQNRYGSRAVRACLEADSIITQCQLLTITSLII 725
Query: 678 KNGRHLAQDPFGNYVVQYIIEL-KIPSVSANLLSQFKG-HYVHLSTQKFSSHVVEKCLK- 734
+LA D G ++ ++++ +P+ + L + + V L K S V K L
Sbjct: 726 VLSPYLATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNL 785
Query: 735 HFGE----SRSQIVHELLSVP 751
GE S+++I+H + P
Sbjct: 786 RGGEEEALSKNKIIHAIFDGP 806
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 124 SVENANKYKTRGGAATDCFNDML 146
S + Y+TR G +D ++L
Sbjct: 57 SPQKIGSYRTRAGRFSDTLTNLL 79
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 70/289 (24%), Positives = 132/289 (45%)
Query: 521 IIFDEVIDH--IVELMMEQFGNYLVQKLLNVCTEEQMTRILL-MVTEEPGQLVRVCLNTY 577
I +EV+ + +++ ++ G ++ + +E+Q+ + + +TE V +C +
Sbjct: 82 ISLEEVLLNGLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKLTESTTLFVGLCHSRN 141
Query: 578 GTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLF- 636
G +VQKL+E +Q L++ + G L + KD V+Q LQ + N L
Sbjct: 142 GNFIVQKLVELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHS-NVFQLIQ 200
Query: 637 ----FDAAAKFCVD-IATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLA--QDPFG 689
FD AA C D I+ H V+QR + + +S +A QD +G
Sbjct: 201 ELSTFDLAA-MCTDQISIH-----VIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYG 254
Query: 690 NYVVQYIIEL-----KIP------SVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFG- 737
+VQ +I+ K+P + +L++ + LS+ +F+++V++ +K G
Sbjct: 255 CRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGI 314
Query: 738 -ES-RSQIVHELLSVPHFEQLLQDPFANYVIQCA-LSVTKGPLHASLIE 783
E R I+ + L + + + QD +A++VI+ A L LH + E
Sbjct: 315 MEMYRDTIIDKCL-LRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEE 362
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 808 768 0.00092 121 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 621 (66 KB)
Total size of DFA: 397 KB (2193 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 65.40u 0.14s 65.54t Elapsed: 00:00:03
Total cpu time: 65.43u 0.14s 65.57t Elapsed: 00:00:03
Start: Fri May 10 09:35:00 2013 End: Fri May 10 09:35:03 2013