Query 038006
Match_columns 808
No_of_seqs 233 out of 1561
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1488 Translational represso 100.0 2.1E-56 4.5E-61 500.7 15.6 313 486-804 173-495 (503)
2 cd07920 Pumilio Pumilio-family 100.0 4.3E-53 9.2E-58 454.9 27.1 313 486-804 3-322 (322)
3 KOG1488 Translational represso 100.0 3.1E-50 6.6E-55 451.1 20.4 300 430-735 179-498 (503)
4 KOG2049 Translational represso 100.0 3.9E-49 8.4E-54 445.6 20.8 321 486-808 211-536 (536)
5 COG5099 RNA-binding protein of 100.0 5.6E-44 1.2E-48 420.3 21.9 302 498-804 447-757 (777)
6 cd07920 Pumilio Pumilio-family 100.0 1.7E-42 3.6E-47 372.8 16.9 305 430-768 10-321 (322)
7 KOG2049 Translational represso 100.0 3.4E-35 7.5E-40 332.6 9.2 294 431-731 218-531 (536)
8 COG5099 RNA-binding protein of 100.0 2.8E-34 6.1E-39 338.5 14.6 298 433-736 443-761 (777)
9 KOG2050 Puf family RNA-binding 99.9 7.7E-25 1.7E-29 245.3 21.3 283 485-776 157-447 (652)
10 KOG2188 Predicted RNA-binding 99.9 3.6E-24 7.8E-29 242.1 21.0 357 445-806 53-607 (650)
11 KOG2050 Puf family RNA-binding 99.8 3.5E-19 7.5E-24 200.3 18.7 281 515-805 147-441 (652)
12 KOG2188 Predicted RNA-binding 99.7 6.2E-17 1.3E-21 183.9 19.2 270 493-769 281-605 (650)
13 KOG4574 RNA-binding protein (c 99.7 2.7E-16 5.8E-21 181.8 10.5 275 518-801 536-846 (1007)
14 KOG4574 RNA-binding protein (c 99.2 8.9E-12 1.9E-16 145.0 3.7 258 472-736 552-853 (1007)
15 PF00806 PUF: Pumilio-family R 98.0 4.5E-06 9.8E-11 62.3 3.1 33 526-558 2-34 (35)
16 PF00806 PUF: Pumilio-family R 97.7 3.2E-05 6.9E-10 57.7 2.7 35 489-523 1-35 (35)
17 smart00025 Pumilio Pumilio-lik 97.5 6.5E-05 1.4E-09 55.0 2.1 32 527-558 3-34 (36)
18 smart00025 Pumilio Pumilio-lik 97.3 0.00016 3.6E-09 52.9 2.3 34 490-523 2-35 (36)
19 PF08144 CPL: CPL (NUC119) dom 86.6 1.1 2.5E-05 44.5 5.3 113 684-805 1-130 (148)
20 PF08144 CPL: CPL (NUC119) dom 85.2 2.1 4.5E-05 42.6 6.3 64 636-699 58-132 (148)
21 PRK05686 fliG flagellar motor 60.0 2.9E+02 0.0064 31.1 19.0 45 687-736 201-245 (339)
22 COG5240 SEC21 Vesicle coat com 49.3 5.9E+02 0.013 31.3 16.1 56 680-736 345-403 (898)
23 KOG2171 Karyopherin (importin) 49.3 5.6E+02 0.012 33.5 16.9 53 636-688 345-402 (1075)
24 PF12231 Rif1_N: Rap1-interact 42.7 2.9E+02 0.0063 31.5 12.4 47 689-736 177-223 (372)
25 PRK05686 fliG flagellar motor 42.6 5.4E+02 0.012 29.0 16.1 29 650-678 200-228 (339)
26 PF09770 PAT1: Topoisomerase I 41.0 14 0.00031 46.1 1.7 96 493-588 576-694 (808)
27 PF09770 PAT1: Topoisomerase I 33.2 57 0.0012 40.9 5.2 144 643-788 576-772 (808)
28 KOG1819 FYVE finger-containing 32.6 17 0.00037 42.4 0.5 18 234-251 742-759 (990)
29 PF05327 RRN3: RNA polymerase 27.5 1E+03 0.022 28.8 14.2 69 593-665 51-121 (563)
30 KOG1059 Vesicle coat complex A 21.6 1.7E+03 0.037 28.2 14.2 50 687-736 387-441 (877)
31 COG1747 Uncharacterized N-term 20.7 1.6E+03 0.035 27.5 13.9 61 616-678 66-126 (711)
32 COG5593 Nucleic-acid-binding p 20.2 1.1E+03 0.024 28.8 11.8 23 505-527 89-111 (821)
33 KOG1819 FYVE finger-containing 20.0 44 0.00095 39.2 0.8 22 392-414 890-911 (990)
No 1
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-56 Score=500.72 Aligned_cols=313 Identities=31% Similarity=0.554 Sum_probs=297.7
Q ss_pred hHHHHhhhHHHHhhcCCccHHHHhhhccCCH-HHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh
Q 038006 486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTF-LDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE 564 (808)
Q Consensus 486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~-Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~ 564 (808)
.+..+.|.+++++.|++|||+||+-++.+++ +++..||+++.+.+.+||+|.||||||||++++++++++..+ ...
T Consensus 173 ~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l---~~~ 249 (503)
T KOG1488|consen 173 ELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLL---HSQ 249 (503)
T ss_pred cccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHH---HHH
Confidence 3457889999999999999999999999988 999999999999999999999999999999999999998776 455
Q ss_pred ccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHH--
Q 038006 565 EPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAK-- 642 (808)
Q Consensus 565 l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~-- 642 (808)
+.+++..||.+.|||||+||+|+......+.+++ .+|..++..+++|++||||||+|+++.+.+.+.+ |++.+.+
T Consensus 250 ~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li-~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~F--iv~~f~~~~ 326 (503)
T KOG1488|consen 250 IKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLI-DELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQF--IVDFFSGDD 326 (503)
T ss_pred HHhhhhhhhcccccchhHHHHHHhcCHHHHHHHH-HHHHhhHHHHHhhcccceehhhhhhccChHHHHH--HHHHhcCCC
Confidence 6899999999999999999999999887776655 6779999999999999999999999999999999 9999999
Q ss_pred HHHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccC
Q 038006 643 FCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ 722 (808)
Q Consensus 643 ~lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~ 722 (808)
++..+|+|+|||+|||++||+|.++++..++++|..++..|++|+|||||||++|+++.+..+..|++.|.++++.++.+
T Consensus 327 ~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~ 406 (503)
T KOG1488|consen 327 NLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQH 406 (503)
T ss_pred ceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cchHHHHHHHHhhh-hhhHHHHHHHHhCC-----chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCC
Q 038006 723 KFSSHVVEKCLKHF-GESRSQIVHELLSV-----PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSP 795 (808)
Q Consensus 723 KyGS~VLEKcL~~a-~k~Rk~II~eLl~~-----~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp 795 (808)
||+|+||||||.++ ...|..+++|++.. +.|..|+.|+|||||||+|++.+.+.+++.|+..|++| ..|+.++
T Consensus 407 KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~h~~~Lrk~s 486 (503)
T KOG1488|consen 407 KFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKPHASRLRKFS 486 (503)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999 99999999999974 56999999999999999999999999999999999999 9999999
Q ss_pred Ccchhhhhh
Q 038006 796 YCKRIFSRN 804 (808)
Q Consensus 796 ~GkrVls~~ 804 (808)
|||||++++
T Consensus 487 yGKhIia~l 495 (503)
T KOG1488|consen 487 YGKHIIAKL 495 (503)
T ss_pred cHHHHHHHH
Confidence 999999985
No 2
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=4.3e-53 Score=454.94 Aligned_cols=313 Identities=43% Similarity=0.752 Sum_probs=298.6
Q ss_pred hHHHHh-hhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh
Q 038006 486 SLADVR-GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE 564 (808)
Q Consensus 486 iLeei~-GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~ 564 (808)
.++++. |++.++|+|++|||+||++|+.++++++..|++++.+++.+||+|+|||||+|++|++++++++..| +..
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i---~~~ 79 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQL---LEK 79 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHH---HHH
Confidence 355666 9999999999999999999999999999999999999999999999999999999999999999988 455
Q ss_pred ccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHH
Q 038006 565 EPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFC 644 (808)
Q Consensus 565 l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~l 644 (808)
+.+++.+|+.|+|||+|||++++.+. +++...+.+++.+++..|+.|++||||||+++++++++.+.. |++.+.+++
T Consensus 80 ~~~~~~~l~~~~~g~~vlqkll~~~~-~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~--i~~~l~~~~ 156 (322)
T cd07920 80 ILGHVVRLSLDMYGCRVIQKLLESIS-EEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQF--IIDAFKGNC 156 (322)
T ss_pred HHHHHHHHcccchhHHHHHHHHHhcC-HHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHH--HHHHHHHHH
Confidence 67999999999999999999999997 566778889999999999999999999999999998888888 999999999
Q ss_pred HHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcc
Q 038006 645 VDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKF 724 (808)
Q Consensus 645 v~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~Ky 724 (808)
..++.|++||+|+|+|++.++++++..+++++.+++..|+.|+|||||||++|+.++++.+..|++.+.++++.|+.+||
T Consensus 157 ~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~ 236 (322)
T cd07920 157 VALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKF 236 (322)
T ss_pred HHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhh-hhhHHHHHHHHhCC----chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcc
Q 038006 725 SSHVVEKCLKHF-GESRSQIVHELLSV----PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCK 798 (808)
Q Consensus 725 GS~VLEKcL~~a-~k~Rk~II~eLl~~----~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~Gk 798 (808)
||+|+++||+.+ ++.|+.++++++.. +++.+|+.|+|||||||++|+.+++.+++.|+..|.++ ..|+.++||+
T Consensus 237 Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~ 316 (322)
T cd07920 237 ASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRPHLPSLRKSPYGK 316 (322)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 999999999999 88999999999974 48999999999999999999999999999999999999 9999999999
Q ss_pred hhhhhh
Q 038006 799 RIFSRN 804 (808)
Q Consensus 799 rVls~~ 804 (808)
+|+.++
T Consensus 317 ~v~~~~ 322 (322)
T cd07920 317 HILAKL 322 (322)
T ss_pred HHHHhC
Confidence 999874
No 3
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-50 Score=451.11 Aligned_cols=300 Identities=19% Similarity=0.270 Sum_probs=280.4
Q ss_pred CCccccCcccccCccccccCccccc-ccccccccccccCCCCcccccCCCccccCcc----------hHHHHhhhHHHHh
Q 038006 430 DSLKGYKQNNLNEIVTRNQPVKICK-HDGCAYDGVICDNGQSLMDIRCPLHLLSSSS----------SLADVRGYIYSMA 498 (808)
Q Consensus 430 ~~~~~f~~dq~gs~f~qqk~~~~~~-~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~----------iLeei~GkI~eLA 498 (808)
+.+..|++||+||||+||+++..+. +|++.+|.+|......+|++.|+|+.+||+. ....+.|+++.||
T Consensus 179 ~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Ls 258 (503)
T KOG1488|consen 179 GHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELS 258 (503)
T ss_pred CCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhh
Confidence 4677899999999999999999888 9999999999998888899999999999974 4457899999999
Q ss_pred hcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccc--hhhhhhcCc
Q 038006 499 KDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPG--QLVRVCLNT 576 (808)
Q Consensus 499 ~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g--~iveLa~hk 576 (808)
.|++||||||+.|+.-+++....++.||.++++.+++|++|||||||+++..+.+.+..|+ +.+.+ ++..||+|+
T Consensus 259 ld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~Fiv---~~f~~~~~~~~ls~~~ 335 (503)
T KOG1488|consen 259 LDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQFIV---DFFSGDDNLLELSTHK 335 (503)
T ss_pred cccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccChHHHHHHH---HHhcCCCceeEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999988884 45555 999999999
Q ss_pred ccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhh
Q 038006 577 YGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCV 656 (808)
Q Consensus 577 yGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~V 656 (808)
|||||||+++|+|..+++.. ++++|..++..|+.|+|||||||++|+++.++++.. |++++.++++++++|||+|+|
T Consensus 336 YGCRVIQr~lE~c~~~~~~~-i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~--I~~~l~~~ll~~Sq~KfASnV 412 (503)
T KOG1488|consen 336 YGCRVIQRILEHCSEDQKQP-LMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTI--IIKCLLGNLLSMSQHKFASNV 412 (503)
T ss_pred cccHHHHHHhhcCChHhhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhh--HHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999998766544 779999999999999999999999999999988888 999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHHHh-------HHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHH
Q 038006 657 LQRCIAHSIGRHRDKLITEISKN-------GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVV 729 (808)
Q Consensus 657 VQkcLe~as~e~r~~LIeeL~~~-------l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VL 729 (808)
||+||++++...|..|++|++.. +..|++|||||||||++|+.+++.+++.|+.+|++|+..|...+||.||+
T Consensus 413 VEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~h~~~Lrk~syGKhIi 492 (503)
T KOG1488|consen 413 VEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKPHASRLRKFSYGKHII 492 (503)
T ss_pred HHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 99999999999999999999863 57799999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 038006 730 EKCLKH 735 (808)
Q Consensus 730 EKcL~~ 735 (808)
+++=+.
T Consensus 493 a~lek~ 498 (503)
T KOG1488|consen 493 AKLEKL 498 (503)
T ss_pred HHHHHh
Confidence 987554
No 4
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-49 Score=445.57 Aligned_cols=321 Identities=50% Similarity=0.839 Sum_probs=311.0
Q ss_pred hHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhc
Q 038006 486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEE 565 (808)
Q Consensus 486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l 565 (808)
.+.++.|.+..+|+|++|||++|+.++.++..+...|+.++..++.+|+.|+||++++|+++++|+++++.+|...++..
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~ 290 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSD 290 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHH
Q 038006 566 PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV 645 (808)
Q Consensus 566 ~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv 645 (808)
.+.+++++.+.||++++|++++...+.+|+..+++++.+.+..|++|.||+||||+||.++.+.+.++ +++++..++.
T Consensus 291 p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~--l~e~i~~~c~ 368 (536)
T KOG2049|consen 291 PRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEF--LYEAILRYCL 368 (536)
T ss_pred ccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcch
Q 038006 646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS 725 (808)
Q Consensus 646 ~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyG 725 (808)
++|++++||+|+|+||.....++|+.|++++..++..|+.|+|||||||++|+..++.....|+..|++++++|+.+|||
T Consensus 369 ~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfg 448 (536)
T KOG2049|consen 369 DLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFG 448 (536)
T ss_pred HHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhCCchHHHHhcCCChhHHHHHHHhcCCh----hhHHHHHHHHhcc-cCccCCCCcchh
Q 038006 726 SHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKG----PLHASLIEAARRH-TNLRTSPYCKRI 800 (808)
Q Consensus 726 S~VLEKcL~~a~k~Rk~II~eLl~~~~L~~La~DqyGNYVIQklL~~ad~----~qre~Ll~eL~ph-~~Lr~sp~GkrV 800 (808)
|+||||||+.++..+..|+.||++.+++.+|+.|+|||||||++|..+++ ..+..++..+++. +.|+++|+|+++
T Consensus 449 S~vVEk~L~~~~~~~~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~ 528 (536)
T KOG2049|consen 449 SHVVEKLLKVRESSRAQIVLELLSCDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIA 528 (536)
T ss_pred cHHHHHHHhcCcchhhHHHHHHHccccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCccccee
Confidence 99999999999777899999999988999999999999999999999986 8999999999998 999999999999
Q ss_pred hhhhcccC
Q 038006 801 FSRNISKK 808 (808)
Q Consensus 801 ls~~~~~k 808 (808)
..+..+++
T Consensus 529 ~~~~~~~~ 536 (536)
T KOG2049|consen 529 LIKDSLRK 536 (536)
T ss_pred eehhcccC
Confidence 99887764
No 5
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-44 Score=420.30 Aligned_cols=302 Identities=38% Similarity=0.638 Sum_probs=288.6
Q ss_pred hhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcc
Q 038006 498 AKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTY 577 (808)
Q Consensus 498 A~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hky 577 (808)
+.|++|||.||+.|+..+.+++..++.++.+...+||+|.|||||+||++++++++++..+ +..+.++++.++.|+|
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~m---l~~~~~~~~~ls~~~~ 523 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIM---LSKSSKHLVSLSVHKY 523 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHH---HHHhhhhHHHhhcccc
Confidence 7999999999999999999999999999999999999999999999999999999999877 6667899999999999
Q ss_pred cchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhH
Q 038006 578 GTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVL 657 (808)
Q Consensus 578 GcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VV 657 (808)
||||+||+++...++.++..+++++.+.+..+++|++||||||+|++.+..+...+ |++.+.+++.++++|+|||+||
T Consensus 524 Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~f--if~~~~~~~~~is~~r~Gs~vv 601 (777)
T COG5099 524 GTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQF--IFDSINENLYDLSTHRYGSRVV 601 (777)
T ss_pred ccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccch--HHHHHHhhhHhhhccccccHHH
Confidence 99999999999999999989999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHH-hhhhcccCcchHHHHHHHHhhh
Q 038006 658 QRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKG-HYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 658 QkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg-~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
|+|++++..+..+.++++|..+...|++|+|||||||++|+.+.+..+..|+..+.. ++++|++|||||.|||||++++
T Consensus 602 q~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~ 681 (777)
T COG5099 602 QRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIKYA 681 (777)
T ss_pred HHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988887 9999999999999999999999
Q ss_pred -hhh-HHHHHHHHhC----Cch-HHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcchhhhhh
Q 038006 737 -GES-RSQIVHELLS----VPH-FEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCKRIFSRN 804 (808)
Q Consensus 737 -~k~-Rk~II~eLl~----~~~-L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~GkrVls~~ 804 (808)
+.. |.+|+.++.. .+. +..|+.|+|||||+|++++...+.++..++..++++ +.|+++++|++|.+.+
T Consensus 682 ~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l~~s~~g~~i~~~l 757 (777)
T COG5099 682 SDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVIPSLKKSMYGQHILALL 757 (777)
T ss_pred CcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 555 6999999986 344 889999999999999999999999999999999999 9999999999998865
No 6
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=1.7e-42 Score=372.83 Aligned_cols=305 Identities=19% Similarity=0.339 Sum_probs=215.2
Q ss_pred CCccccCcccccCccccccCcccccccccccccccccCCCCcccccCCCccccCcchHHHHhhhHHHHhhcCCccHHHHh
Q 038006 430 DSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQR 509 (808)
Q Consensus 430 ~~~~~f~~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~iLeei~GkI~eLA~Dq~GSRVLQk 509 (808)
+.....+.|+.||+++|+.+..++.+++.. +++++.+++.++|+|++|++++|+
T Consensus 10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~--------------------------i~~~l~~~~~~l~~~~~g~~vvq~ 63 (322)
T cd07920 10 GHIVEFAKDQHGSRFLQQKLEEATPEEKEL--------------------------IFDEILPHVVELMVDPFGNYVIQK 63 (322)
T ss_pred cchhhccCCchhhHHHHHHhccCCHHHHHH--------------------------HHHHHHHhHHHHhcCccccHHHHH
Confidence 455568899999999999997766555544 444566677777777777777777
Q ss_pred hhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhc
Q 038006 510 VFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETL 589 (808)
Q Consensus 510 lLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~l 589 (808)
+|+.++++++..|+.++.+++..|+.|+||+||+|++++.++++++..| +.++.+++..|+.|++|++|||++++.+
T Consensus 64 ~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i---~~~l~~~~~~L~~d~~gn~Vvq~~l~~~ 140 (322)
T cd07920 64 LFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLL---VKELRGHVVELVKDQNGNHVIQKCIEKF 140 (322)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHH---HHHHHHCHHHHhhcccccHHHHHHHHhC
Confidence 7777777777777777777777777777777777777777776666555 4455667777777777777777777766
Q ss_pred CcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHhhcchhhH
Q 038006 590 KTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669 (808)
Q Consensus 590 s~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe~as~e~r 669 (808)
+. ++...+++.+.+++..++.|++|++|||++++.++++.+.. +++.+.+++..++.++||++|||++++.++++.+
T Consensus 141 ~~-~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~--l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~ 217 (322)
T cd07920 141 PP-EDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREP--LLEEILEHALELVQDQFGNYVVQHVLELGDPDDT 217 (322)
T ss_pred CH-HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHH--HHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHH
Confidence 33 34455666777777777777777777777777666656666 7777777777777777777777777777777777
Q ss_pred HHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHH------HhhhhcccCcchHHHHHHHHhhh-hhhHHH
Q 038006 670 DKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFK------GHYVHLSTQKFSSHVVEKCLKHF-GESRSQ 742 (808)
Q Consensus 670 ~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lr------g~lv~Ls~~KyGS~VLEKcL~~a-~k~Rk~ 742 (808)
..|++.+.+++..|+.++||++|||++|+.++++.+..|++.|. +++.+|++++||++||+++|..+ +..++.
T Consensus 218 ~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~ 297 (322)
T cd07920 218 SRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQREL 297 (322)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHH
Confidence 77777777777777777777777777777766666777777763 36677777777777777777777 566666
Q ss_pred HHHHHhCCchHHHHhcCCChhHHHHH
Q 038006 743 IVHELLSVPHFEQLLQDPFANYVIQC 768 (808)
Q Consensus 743 II~eLl~~~~L~~La~DqyGNYVIQk 768 (808)
|+..|.. ++..|+.++||+.|+.+
T Consensus 298 i~~~l~~--~~~~L~~~~~G~~v~~~ 321 (322)
T cd07920 298 LVEAIRP--HLPSLRKSPYGKHILAK 321 (322)
T ss_pred HHHHHHH--HHHHHcCCCcHHHHHHh
Confidence 6666654 67777777777777765
No 7
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-35 Score=332.57 Aligned_cols=294 Identities=16% Similarity=0.171 Sum_probs=263.6
Q ss_pred CccccCcccccCccccccCcccccccccccccccccCCCCcccccCCCccccCcc-------------hHHHHhhhHHHH
Q 038006 431 SLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSS-------------SLADVRGYIYSM 497 (808)
Q Consensus 431 ~~~~f~~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~-------------iLeei~GkI~eL 497 (808)
...-+++||+||+++|..+.+.+.+...++|.++.....++|.++++++.+|++. .++.-.+.++.+
T Consensus 218 ~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i 297 (536)
T KOG2049|consen 218 SINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEI 297 (536)
T ss_pred hhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEe
Confidence 3444789999999999999999999999999999999999999999999999763 344556689999
Q ss_pred hhcCCccHHHHhhhccC-CHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCc
Q 038006 498 AKDQNGCRFLQRVFDEG-TFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNT 576 (808)
Q Consensus 498 A~Dq~GSRVLQklLE~~-t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hk 576 (808)
+++++|+|.||++++.. +.+|+..++.+|.+.+..|++|.||+||+|++|...+++..+.+ ++.+..++.++|+|+
T Consensus 298 ~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l---~e~i~~~c~~iA~~~ 374 (536)
T KOG2049|consen 298 CTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFL---YEAILRYCLDLATDQ 374 (536)
T ss_pred eecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHH---HHHHHHHHHHHHHhc
Confidence 99999999999999884 67789999999999999999999999999999999999988877 555678999999999
Q ss_pred ccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhh
Q 038006 577 YGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCV 656 (808)
Q Consensus 577 yGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~V 656 (808)
+||+|||++|..... ++++.+++++..+...|+.|+|||||||.+|+.-......+ |+..+.+++++||++||||+|
T Consensus 375 hGCcvLq~cl~~~~~-~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~--i~~~L~g~~veLS~qKfgS~v 451 (536)
T KOG2049|consen 375 HGCCVLQKCLDYSRG-EQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVN--IAEKLRGHYVELSFQKFGSHV 451 (536)
T ss_pred cccchhHHHhcchhH-HHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHH--HHHhhhhHHHHHHHHhhccHH
Confidence 999999999999866 56778889999999999999999999999999977777778 999999999999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHHH--hHHhhhcCCCchHHHHHHHhhcCc----hhHHHHHHHHHHhhhhcccCcchHHHHH
Q 038006 657 LQRCIAHSIGRHRDKLITEISK--NGRHLAQDPFGNYVVQYIIELKIP----SVSANLLSQFKGHYVHLSTQKFSSHVVE 730 (808)
Q Consensus 657 VQkcLe~as~e~r~~LIeeL~~--~l~~La~DqyGNyVIQkLLe~~~~----k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLE 730 (808)
||+||+..... +..++.|++. .+.+|+.|+|||||||++|..... ..+..++..+++.+..|...++|..+..
T Consensus 452 VEk~L~~~~~~-~~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~ 530 (536)
T KOG2049|consen 452 VEKLLKVRESS-RAQIVLELLSCDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALI 530 (536)
T ss_pred HHHHHhcCcch-hhHHHHHHHccccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeee
Confidence 99999976543 3788888887 899999999999999999998775 6777889999998899999999987765
Q ss_pred H
Q 038006 731 K 731 (808)
Q Consensus 731 K 731 (808)
+
T Consensus 531 ~ 531 (536)
T KOG2049|consen 531 K 531 (536)
T ss_pred h
Confidence 4
No 8
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-34 Score=338.48 Aligned_cols=298 Identities=19% Similarity=0.226 Sum_probs=271.0
Q ss_pred cccC-cccccCccccccCcccccccccccccccccCCCCcccccCCCccccCcc----------hHHHHhhhHHHHhhcC
Q 038006 433 KGYK-QNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSS----------SLADVRGYIYSMAKDQ 501 (808)
Q Consensus 433 ~~f~-~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~----------iLeei~GkI~eLA~Dq 501 (808)
..+. +||+|||++|+++..-..+|...+|.++..--..+|.+.+|++++||+. .+..+.+++..++.++
T Consensus 443 ~~~~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~ 522 (777)
T COG5099 443 IIVSCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHK 522 (777)
T ss_pred cccccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccc
Confidence 3456 9999999999999998889999999999988888899999999999974 4567899999999999
Q ss_pred CccHHHHhhhccC-CHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccch
Q 038006 502 NGCRFLQRVFDEG-TFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTR 580 (808)
Q Consensus 502 ~GSRVLQklLE~~-t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcr 580 (808)
+|||++|++|+.. ++++...|++++.+.+..|++|++||||+||+++....+....| ++.+.+++.++++|+|||+
T Consensus 523 ~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fi---f~~~~~~~~~is~~r~Gs~ 599 (777)
T COG5099 523 YGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFI---FDSINENLYDLSTHRYGSR 599 (777)
T ss_pred cccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchH---HHHHHhhhHhhhccccccH
Confidence 9999999999997 56666699999999999999999999999999999999887777 5667889999999999999
Q ss_pred hHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHH-HHHHHhcCccchhhHHH
Q 038006 581 VVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAK-FCVDIATHQHGCCVLQR 659 (808)
Q Consensus 581 VVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~-~lv~LS~~k~GS~VVQk 659 (808)
|||+++|.+....+ +.++++|......|+.|+|||||||++|+.+.+..++. |+..+.. ++.++++||+||.||||
T Consensus 600 vvq~~le~~~~~~~-~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~--i~~~~l~~~v~elS~~kfaSnvVeK 676 (777)
T COG5099 600 VVQRCLENCNSEDK-ENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKER--IIIKLLSKRVVELSTHKFASNVVEK 676 (777)
T ss_pred HHHHHHHhccHhHH-HHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999977665 67889999999999999999999999999999999999 8888877 99999999999999999
Q ss_pred HHhhcchhh-HHHHHHHHHH------h-HHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHH
Q 038006 660 CIAHSIGRH-RDKLITEISK------N-GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEK 731 (808)
Q Consensus 660 cLe~as~e~-r~~LIeeL~~------~-l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEK 731 (808)
||..+.... +.+|+.++.. . +..|+.|+|||||+|+++.......+..+.+.++.++..|...++|-|++.+
T Consensus 677 ~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l~~s~~g~~i~~~ 756 (777)
T COG5099 677 CIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVIPSLKKSMYGQHILAL 756 (777)
T ss_pred HHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999887 5899998876 2 5779999999999999999999999999999999999999999999999887
Q ss_pred HHhhh
Q 038006 732 CLKHF 736 (808)
Q Consensus 732 cL~~a 736 (808)
+-+..
T Consensus 757 le~~~ 761 (777)
T COG5099 757 LEKVG 761 (777)
T ss_pred HHHHh
Confidence 76655
No 9
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.7e-25 Score=245.34 Aligned_cols=283 Identities=18% Similarity=0.240 Sum_probs=248.5
Q ss_pred chHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh
Q 038006 485 SSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE 564 (808)
Q Consensus 485 ~iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~ 564 (808)
.+..-++|+|..++..++.|||||.+++++++++|..|+++|.|.+++||+++||-|+|||+|.++++.++..| +.+
T Consensus 157 el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~i---I~s 233 (652)
T KOG2050|consen 157 ELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKI---INS 233 (652)
T ss_pred HHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHH---HHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999988 678
Q ss_pred ccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHH
Q 038006 565 EPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFC 644 (808)
Q Consensus 565 l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~l 644 (808)
+.||++.|..|+.|+.||..++....+.+|...++.++.+....++++.+= ..|..+++.. +..+.. |..++.+.+
T Consensus 234 l~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~-~Tl~kil~~~-pekk~~--I~~~l~~~I 309 (652)
T KOG2050|consen 234 LRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSND-KTLDKILAEA-PEKKAS--ILRHLKAII 309 (652)
T ss_pred HhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCc-ccHHHHHHhC-hHhHHH--HHHHHHHHh
Confidence 899999999999999999999998777888889999999999999999332 2355566543 334444 777777766
Q ss_pred HHHhc-----CccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhc
Q 038006 645 VDIAT-----HQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHL 719 (808)
Q Consensus 645 v~LS~-----~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~L 719 (808)
-.++. +..-..++..+|++|+++.+..+++.+.+.+.+|+..+-|+.|.-.++.+++++.|+.|++.|++|+..+
T Consensus 310 ~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~ 389 (652)
T KOG2050|consen 310 TPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKI 389 (652)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 55543 2333456777788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHhhh---hhhHHHHHHHHhCCchHHHHhcCCChhHHHHHHHhcCChh
Q 038006 720 STQKFSSHVVEKCLKHF---GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGP 776 (808)
Q Consensus 720 s~~KyGS~VLEKcL~~a---~k~Rk~II~eLl~~~~L~~La~DqyGNYVIQklL~~ad~~ 776 (808)
+++.||+.|+-.+|++. .-..+.|+.++.+ +|..|+.|+||+.|+++++.-.|+.
T Consensus 390 A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~--el~~li~Dk~Grrv~lyll~p~D~~ 447 (652)
T KOG2050|consen 390 ANDEYGHLVLIALLDCTDDTKLLKKLIYDELKS--ELKSLISDKYGRRVILYLLAPRDGR 447 (652)
T ss_pred HhhccCceehhhhhcccchHHHHHHHHHHHHHH--HHHHHhccchhhhhhhhhccCCccc
Confidence 99999999999999988 2357888899876 8999999999999999999876644
No 10
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.6e-24 Score=242.06 Aligned_cols=357 Identities=16% Similarity=0.191 Sum_probs=236.5
Q ss_pred ccccCcccccccccccccccccCCCCcccccCCCccccCcchHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHH
Q 038006 445 TRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFD 524 (808)
Q Consensus 445 ~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~ 524 (808)
-|.++ ...+.|...||..+-.-..+.-........+-.-.++++..|+.+.+|+++.||.++|+++..++..+...++.
T Consensus 53 ~q~~f-g~~dpE~~~YF~~a~~a~~~~~~~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~ 131 (650)
T KOG2188|consen 53 PQNFF-GGLDPEELGYFRRAESAFKGGFERGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFS 131 (650)
T ss_pred CCCCC-CCcChhhhhHHHHHHHHhhcCccccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHH
Confidence 34444 35656777788875433222211111111111123999999999999999999999999999999999999999
Q ss_pred HHhcchhhhccccchhHHHHHHHhhCCH------------HH-----------HHHHHHHHhhccchhh-hhhcCcccch
Q 038006 525 EVIDHIVELMMEQFGNYLVQKLLNVCTE------------EQ-----------MTRILLMVTEEPGQLV-RVCLNTYGTR 580 (808)
Q Consensus 525 eL~~~~~~L~~DqfGNHVVQKLLe~~se------------eq-----------r~~Ii~iL~~l~g~iv-eLa~hkyGcr 580 (808)
++.+++..++.|+||+||+|++++.... +. -..+..++.++.+++. .++.|.+|++
T Consensus 132 ~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gsh 211 (650)
T KOG2188|consen 132 ALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSH 211 (650)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHH
Confidence 9999999999999999999999987331 00 1224456788888888 9999999999
Q ss_pred hHhHHHhhcCcH----------------------------------HHHHHHHHH----hc-------cCcc--------
Q 038006 581 VVQKLIETLKTR----------------------------------QQVSLVKAA----LK-------PGFL-------- 607 (808)
Q Consensus 581 VVQKLLE~ls~~----------------------------------qqi~lLlee----L~-------~~~~-------- 607 (808)
|+.+++-.+... +....+... +. .++.
T Consensus 212 v~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~ 291 (650)
T KOG2188|consen 212 VLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSS 291 (650)
T ss_pred HHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHH
Confidence 999998765431 000000000 00 0122
Q ss_pred ------------------------------------------------ccccccCCchHHHHHHhhccccchhHHHHHHH
Q 038006 608 ------------------------------------------------DLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDA 639 (808)
Q Consensus 608 ------------------------------------------------eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~ 639 (808)
++..|+.|++++..|++.++.+.... ....
T Consensus 292 s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~l--f~~~ 369 (650)
T KOG2188|consen 292 SNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSL--FYIV 369 (650)
T ss_pred HHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHH--HHHH
Confidence 23335555555555555555544433 4445
Q ss_pred HHHHHHHHhcCccchhhHHHHHhhcc-hhhHHHHHHHHHHhHHhhhcCC-------------------------------
Q 038006 640 AAKFCVDIATHQHGCCVLQRCIAHSI-GRHRDKLITEISKNGRHLAQDP------------------------------- 687 (808)
Q Consensus 640 L~~~lv~LS~~k~GS~VVQkcLe~as-~e~r~~LIeeL~~~l~~La~Dq------------------------------- 687 (808)
+.+.+.+|+.|+.+..+||++|.+.+ .+....+++++.+++..|....
T Consensus 370 f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~ 449 (650)
T KOG2188|consen 370 FCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFH 449 (650)
T ss_pred HHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHh
Confidence 55555566666666666666665555 4555555555554332211111
Q ss_pred ----------------------------------CchHHHHHHHhhcCch---hHHHHHHHHHHhhhhcccCcchHHHHH
Q 038006 688 ----------------------------------FGNYVVQYIIELKIPS---VSANLLSQFKGHYVHLSTQKFSSHVVE 730 (808)
Q Consensus 688 ----------------------------------yGNyVIQkLLe~~~~k---~r~~Ii~~Lrg~lv~Ls~~KyGS~VLE 730 (808)
.|+.++|.++....+. ..+.+..-...++.+++++++||||||
T Consensus 450 ~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIe 529 (650)
T KOG2188|consen 450 AASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIE 529 (650)
T ss_pred cCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHH
Confidence 1222223333221110 011111222345578899999999999
Q ss_pred HHHhhh---hhhHHHHHHHHhCCchHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcchhhhhhcc
Q 038006 731 KCLKHF---GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCKRIFSRNIS 806 (808)
Q Consensus 731 KcL~~a---~k~Rk~II~eLl~~~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~GkrVls~~~~ 806 (808)
.+|... .+.+++++..|=+ ...+|+.+.||++|+.++|+.++..++++|+.+|... ..++.++||+.|+.+.-|
T Consensus 530 avL~S~~l~~~~~~kLi~~l~g--~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~~~~vk~s~~gk~v~~~~~l 607 (650)
T KOG2188|consen 530 AVLASKDLGEKIKEKLINILDG--SFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGIHNDVKSSKYGKFVMLNWDL 607 (650)
T ss_pred HHHHhccccHHHHHHHHHHhhc--cchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhhccccccCcchHHHHHhccH
Confidence 999994 7788888887754 7899999999999999999999999999999999988 999999999999987654
No 11
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.5e-19 Score=200.32 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=221.7
Q ss_pred CHHHHHHHHHHH----hcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcC
Q 038006 515 TFLDLQIIFDEV----IDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLK 590 (808)
Q Consensus 515 t~Eq~~~I~~eL----~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls 590 (808)
..+++..++.++ .+++..|+.-.-.+.|||.|+.++++.+|.+| ++++.+.+++||+.+||-+.||+++.+.+
T Consensus 147 ~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~i---f~eL~p~~v~l~kskY~k~~v~KmLkyGs 223 (652)
T KOG2050|consen 147 PKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQI---FEELLPFFVELAKSKYAKFFVQKMLKYGS 223 (652)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHH---HHHHhHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 347776666555 47888888888889999999999998888888 56778888999999999888999888874
Q ss_pred cHHHHHHHHHHhccCccccccccCCchHHHHHHhh-ccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHhhcchhhH
Q 038006 591 TRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQC-LSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHR 669 (808)
Q Consensus 591 ~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~-~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe~as~e~r 669 (808)
+++...|+.++++++..|+.+..|++||...... ....++.. ++..+.+.-..+..+ .--..|.++++. .++.+
T Consensus 224 -k~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~--li~EfYG~efqlfK~-sn~~Tl~kil~~-~pekk 298 (652)
T KOG2050|consen 224 -KAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQY--LIQEFYGDEFQLFKD-SNDKTLDKILAE-APEKK 298 (652)
T ss_pred -HHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHH--HHHHHhhHHHHHHhc-cCcccHHHHHHh-ChHhH
Confidence 4556677788888888888888888888877765 34455666 888888887777776 333445566654 34556
Q ss_pred HHHHHHHHHhHHhhhc-CCCchHHH----HHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh-hhhHHHH
Q 038006 670 DKLITEISKNGRHLAQ-DPFGNYVV----QYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF-GESRSQI 743 (808)
Q Consensus 670 ~~LIeeL~~~l~~La~-DqyGNyVI----QkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a-~k~Rk~I 743 (808)
..|+..+...+..++. -..+.-+| --.+..++++.+..++..+...++.+...+-||+|..+||.++ ++.|+.|
T Consensus 299 ~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~I 378 (652)
T KOG2050|consen 299 ASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLI 378 (652)
T ss_pred HHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHH
Confidence 6666666665443332 22233233 2233458899999999999999999999999999999999999 9999999
Q ss_pred HHHHhCCchHHHHhcCCChhHHHHHHHhcCChh--hHHHHHHHHhcc-cCccCCCCcchhhhhhc
Q 038006 744 VHELLSVPHFEQLLQDPFANYVIQCALSVTKGP--LHASLIEAARRH-TNLRTSPYCKRIFSRNI 805 (808)
Q Consensus 744 I~eLl~~~~L~~La~DqyGNYVIQklL~~ad~~--qre~Ll~eL~ph-~~Lr~sp~GkrVls~~~ 805 (808)
+..+-. +++.++.|+||+.|+-++|+++|+. ..+.|++++..+ +.|-..+||++|+-=++
T Consensus 379 iK~~K~--h~~K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyll 441 (652)
T KOG2050|consen 379 IKNMKE--HVEKIANDEYGHLVLIALLDCTDDTKLLKKLIYDELKSELKSLISDKYGRRVILYLL 441 (652)
T ss_pred HHHHHH--HHHHHHhhccCceehhhhhcccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhc
Confidence 999965 9999999999999999999999865 678888999999 99999999999986554
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.2e-17 Score=183.93 Aligned_cols=270 Identities=17% Similarity=0.274 Sum_probs=199.0
Q ss_pred hHHHHhhcCCccHHHHhhhccCC-----HHHHHHH--HHH----Hh---------cchhhhccccchhHHHHHHHhhCCH
Q 038006 493 YIYSMAKDQNGCRFLQRVFDEGT-----FLDLQII--FDE----VI---------DHIVELMMEQFGNYLVQKLLNVCTE 552 (808)
Q Consensus 493 kI~eLA~Dq~GSRVLQklLE~~t-----~Eq~~~I--~~e----L~---------~~~~~L~~DqfGNHVVQKLLe~~se 552 (808)
.+...++|++.+.++|++|...- ++..... +-. .. +-...+..|+.|+|+++.+++.+++
T Consensus 281 ~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~ 360 (650)
T KOG2188|consen 281 DLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASE 360 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCH
Confidence 45667789999999999886532 2222111 111 00 1134567799999999999999999
Q ss_pred HHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCch---------------
Q 038006 553 EQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNH--------------- 617 (808)
Q Consensus 553 eqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNh--------------- 617 (808)
... .++.+ .+.+++.+||.|+.+.++||++|+++.+.+++..|++++.|++..|+...+...
T Consensus 361 ~~~-~lf~~--~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q 437 (650)
T KOG2188|consen 361 SLL-SLFYI--VFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQ 437 (650)
T ss_pred HHH-HHHHH--HHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhH
Confidence 988 44433 367799999999999999999999999899999999999999999988665432
Q ss_pred --HHHHHHhhc--cccchhHHHHHHHHHHHH--HH------Hh--cCccchhhHHHHHhhcchh---hHHHHHHHHHHhH
Q 038006 618 --VLQRCLQCL--SNEDNEVYLFFDAAAKFC--VD------IA--THQHGCCVLQRCIAHSIGR---HRDKLITEISKNG 680 (808)
Q Consensus 618 --VIQkILe~~--s~~~~~~~~Iie~L~~~l--v~------LS--~~k~GS~VVQkcLe~as~e---~r~~LIeeL~~~l 680 (808)
|+|.+++.. ..+...- |+.+++-.. .. .+ .|..|+-++|.++.+.... ....+.+...+++
T Consensus 438 ~~~l~~Li~a~~~~~~~~k~--il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi 515 (650)
T KOG2188|consen 438 DKMLQQLIQAFHAASESKKN--ILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQI 515 (650)
T ss_pred HHHHHHHHHHHhcCChhhcc--hHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHH
Confidence 333333321 1111111 222211110 00 11 2457889999999875542 2223334444578
Q ss_pred HhhhcCCCchHHHHHHHhh--cCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh-hhhHHHHHHHHhCCchHHHHh
Q 038006 681 RHLAQDPFGNYVVQYIIEL--KIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF-GESRSQIVHELLSVPHFEQLL 757 (808)
Q Consensus 681 ~~La~DqyGNyVIQkLLe~--~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a-~k~Rk~II~eLl~~~~L~~La 757 (808)
.+++.+.+|++||+.+|.. .+++.+.+|+..|.+++++|+.+.+||||++|||+.+ ...|.+|+++|++. -.++-
T Consensus 516 ~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~--~~~vk 593 (650)
T KOG2188|consen 516 LEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGI--HNDVK 593 (650)
T ss_pred HHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhh--ccccc
Confidence 9999999999999999998 5778999999999999999999999999999999999 99999999999973 35788
Q ss_pred cCCChhHHHHHH
Q 038006 758 QDPFANYVIQCA 769 (808)
Q Consensus 758 ~DqyGNYVIQkl 769 (808)
.++||.||..+.
T Consensus 594 ~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 594 SSKYGKFVMLNW 605 (650)
T ss_pred cCcchHHHHHhc
Confidence 999999998764
No 13
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=181.82 Aligned_cols=275 Identities=21% Similarity=0.251 Sum_probs=225.4
Q ss_pred HHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcCcHHHHHH
Q 038006 518 DLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSL 597 (808)
Q Consensus 518 q~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~l 597 (808)
+++.+.-++.++..++..|=.||-|+||+++.+....+..+ ++....++.....|++|.++.||+++...++.++..
T Consensus 536 Eied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~am---l~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~ 612 (1007)
T KOG4574|consen 536 EIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAM---LRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKL 612 (1007)
T ss_pred hHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHH---HhhhhhhhhhccccccchHHHHHHHHHhhchhhhhe
Confidence 55666677778889999999999999999999999888765 666788999999999999999999999999999999
Q ss_pred HHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHhh--cchhhHHHHHHH
Q 038006 598 VKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAH--SIGRHRDKLITE 675 (808)
Q Consensus 598 LleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe~--as~e~r~~LIee 675 (808)
++..+.+.+..++.|+|||||+|.+|...- ....+ |++.+..++.++.+.+||++.+.+|++. +..++....++.
T Consensus 613 iv~g~dpyc~~l~~dqfgnyvaqd~LkF~f-p~nsF--VfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s 689 (1007)
T KOG4574|consen 613 IVRGVDPYCTPLLNDQFGNYVAQDSLKFGF-PWNSF--VFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRES 689 (1007)
T ss_pred eeeccCcchhhHHHHhhcceeeeeehhccC-ccchH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhh
Confidence 999999999999999999999999999864 45677 8999999999999999999999999984 333444333333
Q ss_pred H-HHhHHhhhcCCCchHHHHHHHhhcCchhHH-HHHHHHHHhhhhcccCcchHHHHHHHHhhh--hhhHHHHHHHHhCC-
Q 038006 676 I-SKNGRHLAQDPFGNYVVQYIIELKIPSVSA-NLLSQFKGHYVHLSTQKFSSHVVEKCLKHF--GESRSQIVHELLSV- 750 (808)
Q Consensus 676 L-~~~l~~La~DqyGNyVIQkLLe~~~~k~r~-~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a--~k~Rk~II~eLl~~- 750 (808)
+ ......++.+.-|-.+|.|+|+.+.-..+. .++..+.+++++||.|+-|+-++.|+++.+ +..|++|++.|+..
T Consensus 690 ~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~ 769 (1007)
T KOG4574|consen 690 CIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLR 769 (1007)
T ss_pred hhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhcc
Confidence 2 334678999999999999999987655554 457778899999999999999999999999 56699999999831
Q ss_pred ---------------------------chHHHHhcCCChhHHHHHHHhcCCh--hhHHHHHHHHhcccCccCCCCcchhh
Q 038006 751 ---------------------------PHFEQLLQDPFANYVIQCALSVTKG--PLHASLIEAARRHTNLRTSPYCKRIF 801 (808)
Q Consensus 751 ---------------------------~~L~~La~DqyGNYVIQklL~~ad~--~qre~Ll~eL~ph~~Lr~sp~GkrVl 801 (808)
+.++....|+|+++|.|.++..... +.-+.|++++-.. +.+++|++-+
T Consensus 770 n~kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~narv~~Lleevgli---Sasksgs~s~ 846 (1007)
T KOG4574|consen 770 NFKDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSNARVQRLLEEVGLI---SASKSGSQSI 846 (1007)
T ss_pred ccccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh---ccccchhHHH
Confidence 2367788999999999999987542 2225666666543 3335555433
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.18 E-value=8.9e-12 Score=145.00 Aligned_cols=258 Identities=17% Similarity=0.165 Sum_probs=186.3
Q ss_pred ccccCCCccccCcc-----hH-----HHHhhhHHHHhhcCCccHHHHhhhccC-CHHHHHHHHHHHhcchhhhccccchh
Q 038006 472 MDIRCPLHLLSSSS-----SL-----ADVRGYIYSMAKDQNGCRFLQRVFDEG-TFLDLQIIFDEVIDHIVELMMEQFGN 540 (808)
Q Consensus 472 ~~~~~~~~l~qk~~-----iL-----eei~GkI~eLA~Dq~GSRVLQklLE~~-t~Eq~~~I~~eL~~~~~~L~~DqfGN 540 (808)
..+..+++++|++. ++ +...-++..+..+.+|.+..|++++.+ ++.+...|+.-+.+....|..|+|||
T Consensus 552 sSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~dqfgn 631 (1007)
T KOG4574|consen 552 SSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLNDQFGN 631 (1007)
T ss_pred hhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHHHhhcc
Confidence 35778888888874 22 233445556789999999999999986 78888999999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcC--cHHHHHHHHHHhccCccccccccCCchH
Q 038006 541 YLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLK--TRQQVSLVKAALKPGFLDLIKDLNGNHV 618 (808)
Q Consensus 541 HVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls--~~qqi~lLleeL~~~~~eLa~Dq~GNhV 618 (808)
||+|-+|..+-+..- .+++....++.++...+||++.+.+++|... .+++-.-+-..+......+..+..|-..
T Consensus 632 yvaqd~LkF~fp~ns----FVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~ll 707 (1007)
T KOG4574|consen 632 YVAQDSLKFGFPWNS----FVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLLL 707 (1007)
T ss_pred eeeeeehhccCccch----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCcccee
Confidence 999999998765321 2256678899999999999999999999865 3333222222334447888999999999
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHhhcchhh-HHHHHHHHHHh------------------
Q 038006 619 LQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH-RDKLITEISKN------------------ 679 (808)
Q Consensus 619 IQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe~as~e~-r~~LIeeL~~~------------------ 679 (808)
|.++|+.+....+.. +++..+.+++..+|.|+.|+-+|+|+++.+.+.. +++|++.|+..
T Consensus 708 vtw~lDns~~~nrh~-~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~kd~~lt~Vl~~~~~g 786 (1007)
T KOG4574|consen 708 VTWLLDNSSLPNRHT-ILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFKDSALTEVLTEANYG 786 (1007)
T ss_pred eeeecccccccchhh-HHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccccchhhhhhhhhccc
Confidence 999999766655555 2445667999999999999999999999888766 77777776631
Q ss_pred ------------HHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 680 ------------GRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 680 ------------l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
+.....||++++|.|.++...... ..-+++|.+.+--.+..++|++-++.|+...
T Consensus 787 pmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~--narv~~LleevgliSasksgs~s~q~~~sss 853 (1007)
T KOG4574|consen 787 PMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVS--NARVQRLLEEVGLISASKSGSQSIQMHISSS 853 (1007)
T ss_pred cceeeeeeccccchHHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHhhhccccchhHHHHhhhccC
Confidence 123344556666666666642221 1112555555555666666666666666655
No 15
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.00 E-value=4.5e-06 Score=62.32 Aligned_cols=33 Identities=42% Similarity=0.631 Sum_probs=25.7
Q ss_pred HhcchhhhccccchhHHHHHHHhhCCHHHHHHH
Q 038006 526 VIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRI 558 (808)
Q Consensus 526 L~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~I 558 (808)
+.+++..|+.|+||||||||+|+.++++++..|
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~i 34 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLI 34 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhh
Confidence 567788888888888888888888777776654
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.66 E-value=3.2e-05 Score=57.75 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=32.1
Q ss_pred HHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHH
Q 038006 489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIF 523 (808)
Q Consensus 489 ei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~ 523 (808)
++.|++..||+|++||+|||++|+.++++++..|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 47899999999999999999999999999988764
No 17
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.47 E-value=6.5e-05 Score=55.02 Aligned_cols=32 Identities=44% Similarity=0.653 Sum_probs=22.2
Q ss_pred hcchhhhccccchhHHHHHHHhhCCHHHHHHH
Q 038006 527 IDHIVELMMEQFGNYLVQKLLNVCTEEQMTRI 558 (808)
Q Consensus 527 ~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~I 558 (808)
.+++.+||.|+|||||+|++|+.+++.++..|
T Consensus 3 ~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i 34 (36)
T smart00025 3 KGHLLELSKDQYGNRVVQKLLEHASESQREQI 34 (36)
T ss_pred hHHHHHHHhcchhhHHHHHHHHHCCHHHHHHh
Confidence 45667777777777777777777777665554
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.27 E-value=0.00016 Score=52.88 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=31.3
Q ss_pred HhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHH
Q 038006 490 VRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIF 523 (808)
Q Consensus 490 i~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~ 523 (808)
+.|++.+||+|++||+|||++|+.+++.++..++
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5789999999999999999999999999888775
No 19
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=86.64 E-value=1.1 Score=44.49 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred hcCCCchHHHHHHHhhcCchhH-HHHHHHHHHhhhhcccCcchHH---HHH-HHHhhhhhhHHHHHHHHhCCchHHHHhc
Q 038006 684 AQDPFGNYVVQYIIELKIPSVS-ANLLSQFKGHYVHLSTQKFSSH---VVE-KCLKHFGESRSQIVHELLSVPHFEQLLQ 758 (808)
Q Consensus 684 a~DqyGNyVIQkLLe~~~~k~r-~~Ii~~Lrg~lv~Ls~~KyGS~---VLE-KcL~~a~k~Rk~II~eLl~~~~L~~La~ 758 (808)
+.|+||-.|+.++|.--+++.. ..+++.|.+-. ..+++.. +-. .+++. .-..+++.+. .+...|+.
T Consensus 1 i~dk~gRr~llYLl~~~d~~~f~p~~i~~L~~~d----~~~tSKKd~~~Rr~ELl~~---~sp~Ll~~i~--~~~~~ll~ 71 (148)
T PF08144_consen 1 INDKYGRRVLLYLLSPRDPRYFSPEIIKLLKEGD----RNATSKKDPEVRRKELLEA---ISPPLLEAIA--ENAEELLS 71 (148)
T ss_pred CCCccCceeeeeeccCCCcccCCHHHHHHHhhhc----ccccccCCHHHHHHHHHHH---hhHHHHHHHH--HhHHHHHh
Confidence 3688888888888885444432 23334333221 2222211 000 01111 1122233333 36789999
Q ss_pred CCChhHHHHHHHhcCChh---hHHHHHHHHhcc---------cCccCCCCcchhhhhhc
Q 038006 759 DPFANYVIQCALSVTKGP---LHASLIEAARRH---------TNLRTSPYCKRIFSRNI 805 (808)
Q Consensus 759 DqyGNYVIQklL~~ad~~---qre~Ll~eL~ph---------~~Lr~sp~GkrVls~~~ 805 (808)
+.+|..||..+|..++++ ..+.|++.+... .-+...|+|++++.+++
T Consensus 72 ~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Li 130 (148)
T PF08144_consen 72 SSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLI 130 (148)
T ss_pred cCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHH
Confidence 999999999999887643 233444444321 23557899999998775
No 20
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=85.21 E-value=2.1 Score=42.64 Aligned_cols=64 Identities=17% Similarity=0.399 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHhhcchhhHH---HHHHHHHHh--------HHhhhcCCCchHHHHHHHhh
Q 038006 636 FFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRD---KLITEISKN--------GRHLAQDPFGNYVVQYIIEL 699 (808)
Q Consensus 636 Iie~L~~~lv~LS~~k~GS~VVQkcLe~as~e~r~---~LIeeL~~~--------l~~La~DqyGNyVIQkLLe~ 699 (808)
+++.+..+..++..++.||.+|..++..+..+... .|++.+... -.+++.+++|.+++-+|++.
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~ 132 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQG 132 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHC
Confidence 55555566667777777777777777765543222 222222221 13455666666666666653
No 21
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=60.04 E-value=2.9e+02 Score=31.05 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=28.9
Q ss_pred CCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 687 PFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 687 qyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
.-|-..+--+|...+....+.|++.|...=.. .+-.|-+++|...
T Consensus 201 ~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~-----~a~~Ir~~mF~Fe 245 (339)
T PRK05686 201 MGGVKTVAEILNNLDRQTEKTILESLEEEDPE-----LAEKIKDLMFVFE 245 (339)
T ss_pred cCcHHHHHHHHhcCCchHHHHHHHHHHhhCHH-----HHHHHHHHhcCHH
Confidence 34666677788877777777888877643333 3456666666554
No 22
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=49.29 E-value=5.9e+02 Score=31.32 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=35.5
Q ss_pred HHhhhcCCC---chHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 680 GRHLAQDPF---GNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 680 l~~La~Dqy---GNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
+..|+.|.. ..|.|..+|+.+..+....++..|-..+-+ ..+-|-.-+++++-..+
T Consensus 345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD-~SD~FKiI~ida~rsLs 403 (898)
T COG5240 345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHD-MSDGFKIIAIDALRSLS 403 (898)
T ss_pred HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHh-hccCceEEeHHHHHHHH
Confidence 456776664 579999999999888888887776433322 33444444555443333
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.26 E-value=5.6e+02 Score=33.50 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcC-----ccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCC
Q 038006 636 FFDAAAKFCVDIATH-----QHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPF 688 (808)
Q Consensus 636 Iie~L~~~lv~LS~~-----k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~Dqy 688 (808)
++.-+...+..+.++ ++++...-..+..+..++....+.+|...+.....|++
T Consensus 345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph 402 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH 402 (1075)
T ss_pred ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC
Confidence 344444444444432 44444444455555666777778888887777788875
No 24
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=42.74 E-value=2.9e+02 Score=31.45 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=20.7
Q ss_pred chHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 689 GNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 689 GNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
.-.++..++.. ..+.|..++.-+.+-...+..++.-++.+..+++..
T Consensus 177 ~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~ 223 (372)
T PF12231_consen 177 FPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRS 223 (372)
T ss_pred HHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccc
Confidence 34555556553 233344333333222233444445555555555444
No 25
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=42.63 E-value=5.4e+02 Score=28.96 Aligned_cols=29 Identities=3% Similarity=0.138 Sum_probs=20.9
Q ss_pred CccchhhHHHHHhhcchhhHHHHHHHHHH
Q 038006 650 HQHGCCVLQRCIAHSIGRHRDKLITEISK 678 (808)
Q Consensus 650 ~k~GS~VVQkcLe~as~e~r~~LIeeL~~ 678 (808)
..-|...+-.+|...+....+.+++.|..
T Consensus 200 ~~~g~~~~a~Iln~~~~~~~~~il~~L~~ 228 (339)
T PRK05686 200 KMGGVKTVAEILNNLDRQTEKTILESLEE 228 (339)
T ss_pred ccCcHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 34566777788888777777777777665
No 26
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=41.05 E-value=14 Score=46.11 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=63.3
Q ss_pred hHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchh-----------------hhc----cccchhHHHHHHHhhCC
Q 038006 493 YIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIV-----------------ELM----MEQFGNYLVQKLLNVCT 551 (808)
Q Consensus 493 kI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~-----------------~L~----~DqfGNHVVQKLLe~~s 551 (808)
.++.+..=..|=++|-|+|...+.+++..|+..|..++- .+. .|.|-..|+..++.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 566677777788999999999999999999999998883 222 34566666666666555
Q ss_pred HHHHHHHHHHHhhc--cchhhhhhcCcccchhHhHHHhh
Q 038006 552 EEQMTRILLMVTEE--PGQLVRVCLNTYGTRVVQKLIET 588 (808)
Q Consensus 552 eeqr~~Ii~iL~~l--~g~iveLa~hkyGcrVVQKLLE~ 588 (808)
+.....|+.++..+ ..++.-++++++|.-+|-.+|..
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsR 694 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSR 694 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHH
Confidence 54443333222221 35667788999999888888764
No 27
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=33.19 E-value=57 Score=40.89 Aligned_cols=144 Identities=14% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhh---------------------cCCCchHHHHHHHhhcC
Q 038006 643 FCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLA---------------------QDPFGNYVVQYIIELKI 701 (808)
Q Consensus 643 ~lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La---------------------~DqyGNyVIQkLLe~~~ 701 (808)
.++.+..-.-|-++|-++|.+.+.+++..|+..|+.++..|. .|.|-..|+..++.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 355666666788899999999999999999999988873321 12233333333332211
Q ss_pred chhHHHHHHH---H--HHhhhhcccCcchHHHHHHHHhhhh-------------hhHHHHHHHHhCCchHH---------
Q 038006 702 PSVSANLLSQ---F--KGHYVHLSTQKFSSHVVEKCLKHFG-------------ESRSQIVHELLSVPHFE--------- 754 (808)
Q Consensus 702 ~k~r~~Ii~~---L--rg~lv~Ls~~KyGS~VLEKcL~~a~-------------k~Rk~II~eLl~~~~L~--------- 754 (808)
......|+.. | ..++..++++|+|--+|..+|..+. ..+..++..|+. .|.
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRae~l~~~~~~~~~~~~~W~~~~~~lf~--~l~~~~~~~~fp 733 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRAELLKQSGSSSEEEWSQWTEFYDQLFD--SLEEPRLPSIFP 733 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHHHHHHHT------HHHHHHHH--------------------
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHHHHhhccCCCCHHHHHHhhhhhhhccc--cccccccccccc
Confidence 1111111111 1 2455668999999999998887651 234555666654 221
Q ss_pred H--HhcCCChhHHHHHHHhcC---ChhhHHHHHHHHhcc
Q 038006 755 Q--LLQDPFANYVIQCALSVT---KGPLHASLIEAARRH 788 (808)
Q Consensus 755 ~--La~DqyGNYVIQklL~~a---d~~qre~Ll~eL~ph 788 (808)
- -..+---.||.|-+-..+ +.++...|+.++++.
T Consensus 734 ~~~~~~~~~~~~vwq~la~~~~~~~~~~q~~lv~~vrd~ 772 (808)
T PF09770_consen 734 PDSSINSGDDSYVWQFLAALALGASPEQQQILVDEVRDR 772 (808)
T ss_dssp ---------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 1 233445568877555432 456777777777765
No 28
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=32.63 E-value=17 Score=42.39 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=11.7
Q ss_pred CCcccccccccccccccc
Q 038006 234 LNNVVSDYQGLSSSHTAV 251 (808)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (808)
+.+.||--+|-|.+-.+-
T Consensus 742 ldnvfsagggnqatgqrh 759 (990)
T KOG1819|consen 742 LDNVFSAGGGNQATGQRH 759 (990)
T ss_pred hhhhhccCCccccccccc
Confidence 447777777777655443
No 29
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=27.55 E-value=1e+03 Score=28.75 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHH--hcCccchhhHHHHHhhcc
Q 038006 593 QQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDI--ATHQHGCCVLQRCIAHSI 665 (808)
Q Consensus 593 qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~L--S~~k~GS~VVQkcLe~as 665 (808)
.++..++.++...+..|-.+ -+.+|+.++...--..... +++....-+..| +...|-..|+.++++...
T Consensus 51 ~~l~~~L~~L~~~Vs~Ld~~--~~~LV~ail~~~W~~~~~~--~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~ 121 (563)
T PF05327_consen 51 SQLIRWLKALSSCVSLLDSS--CKQLVEAILSLNWLGRDED--FVEAYIQFLINLVSAQPKYLSPVLSMLVKNFI 121 (563)
T ss_dssp HHHHHHHHHHHHGGGGG-SC--CHHHHHHHHT-TGGGS-HH--HHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhhH--HHHHHHHHHcCCCCCCCHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34556667777777666665 6677888888732222333 555555555444 345677778888877544
No 30
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=1.7e+03 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCchHHHHHHHhhcCchhHHHH-----HHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 687 PFGNYVVQYIIELKIPSVSANL-----LSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 687 qyGNyVIQkLLe~~~~k~r~~I-----i~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
.|-+-++-.+|+.|....-..| +-.+...+..|....+|+.+-+.+++.+
T Consensus 387 ~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 387 NYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 4556666677766544333322 1223445667788899999999999988
No 31
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=20.67 E-value=1.6e+03 Score=27.48 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=48.2
Q ss_pred chHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHH
Q 038006 616 NHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISK 678 (808)
Q Consensus 616 NhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~ 678 (808)
--.+-+++..+....+.. |++++...++.++.++.+-.-+-+|+.....++.-.+.+.+.+
T Consensus 66 d~~l~~~~~~f~~n~k~~--~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWer~ve 126 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQ--IVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWERLVE 126 (711)
T ss_pred chHHHHHHHHhccchHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 344677788777777777 9999999999999999999988888877677777777775544
No 32
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=1.1e+03 Score=28.81 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=16.1
Q ss_pred HHHHhhhccCCHHHHHHHHHHHh
Q 038006 505 RFLQRVFDEGTFLDLQIIFDEVI 527 (808)
Q Consensus 505 RVLQklLE~~t~Eq~~~I~~eL~ 527 (808)
+++|.+|..+|..++...+.-|.
T Consensus 89 k~~~~lls~GT~~DrIsalTLLV 111 (821)
T COG5593 89 KIEKDLLSHGTVKDRISALTLLV 111 (821)
T ss_pred HHHHHHHhcCchhhhhhhhHhhh
Confidence 77888888887777666555444
No 33
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=20.05 E-value=44 Score=39.22 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=11.1
Q ss_pred ccccccccCCCCCCCCcccCCCe
Q 038006 392 VSESFMPVNGAGAIEGFGCEDSF 414 (808)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~s~ 414 (808)
.|.--| |+.+.+.-.|+|..-|
T Consensus 890 lsppaw-ipd~~a~~cmacq~pf 911 (990)
T KOG1819|consen 890 LSPPAW-IPDEDAEQCMACQMPF 911 (990)
T ss_pred cCCccc-CCCCcchhhhhccCcH
Confidence 333456 4444555566665544
Done!