Query 038006
Match_columns 808
No_of_seqs 233 out of 1561
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 10:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 4.7E-59 1.6E-63 508.2 23.9 313 486-804 20-339 (351)
2 3bwt_A Protein PUF4; pumilio, 100.0 1.4E-57 4.7E-62 491.8 22.1 316 485-806 6-333 (333)
3 3k49_A MRNA-binding protein PU 100.0 2.1E-57 7.2E-62 498.3 20.6 315 484-804 23-357 (369)
4 3k62_A FEM-3 mRNA-binding fact 100.0 3.5E-55 1.2E-59 488.9 22.0 314 485-804 20-399 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 6.7E-55 2.3E-59 482.1 21.0 321 479-804 5-378 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 2.2E-48 7.6E-53 424.1 8.2 299 432-736 28-343 (351)
7 3k62_A FEM-3 mRNA-binding fact 100.0 4E-47 1.4E-51 424.0 8.2 329 389-736 2-403 (412)
8 3v71_A PUF (pumilio/FBF) domai 100.0 1.1E-44 3.6E-49 400.6 6.8 300 431-735 21-381 (382)
9 3k49_A MRNA-binding protein PU 100.0 7.6E-45 2.6E-49 398.7 4.9 300 431-736 32-361 (369)
10 3bwt_A Protein PUF4; pumilio, 100.0 1.9E-42 6.5E-47 373.6 9.3 295 429-731 12-330 (333)
11 3qx3_A DNA topoisomerase 2-bet 75.3 2 6.9E-05 51.2 4.5 25 3-27 725-749 (803)
12 4grv_A Neurotensin receptor ty 55.8 2.4 8.2E-05 47.3 0.0 12 63-75 499-510 (510)
13 2lie_A CCL2 lectin; sugar bind 58.8 2.7 9.4E-05 39.7 0.0 13 69-81 7-19 (153)
14 2yjp_A Putative ABC transporte 48.4 3.7 0.00013 41.8 0.0 12 69-80 10-21 (291)
15 2qrj_A Saccharopine dehydrogen 47.0 4.3 0.00015 45.0 0.2 20 69-88 13-32 (394)
16 4g2c_A DYP2; DYE peroxidase, o 46.0 4.3 0.00015 46.3 0.0 22 65-86 7-29 (493)
17 1jr2_A Uroporphyrinogen-III sy 44.9 4.8 0.00016 41.8 0.2 16 66-81 7-22 (286)
18 2r9r_B Paddle chimera voltage 42.8 5.1 0.00018 45.7 0.0 7 176-182 54-60 (514)
19 3oja_B Anopheles plasmodium-re 41.9 20 0.00069 40.7 4.8 16 38-53 571-586 (597)
20 3c3r_A Programmed cell death 6 41.7 7.4 0.00025 42.7 1.0 12 110-121 27-38 (380)
21 1wuf_A Hypothetical protein LI 40.7 6 0.0002 43.3 0.1 14 64-77 5-18 (393)
22 1yke_B RNA polymerase II holoe 40.5 37 0.0013 32.7 5.6 48 7-54 82-135 (151)
23 4faj_A PRGZ; substrate binding 38.7 6.5 0.00022 41.6 0.0 7 173-179 92-98 (564)
24 2es4_D Lipase chaperone; prote 38.6 6.5 0.00022 42.6 0.0 13 724-736 261-273 (332)
25 1jfn_A APO(A) KIV-T6, apolipop 38.6 66 0.0022 29.8 6.8 28 147-178 49-76 (119)
26 1d1d_A Protein (capsid protein 37.5 7 0.00024 41.1 0.0 43 662-704 179-223 (262)
27 1wue_A Mandelate racemase/muco 37.2 8.9 0.0003 41.8 0.8 14 64-77 5-18 (386)
28 3tla_A MCCF; serine protease, 37.1 7.1 0.00024 42.9 0.0 7 225-231 125-131 (371)
29 2oar_A Large-conductance mecha 35.3 7.9 0.00027 38.3 0.0 10 565-574 33-42 (174)
30 2klz_A Ataxin-3; UIM, ubiquiti 34.3 42 0.0014 26.6 3.9 29 31-59 20-48 (52)
31 2j6v_A UV endonuclease, UVDE; 33.6 8.6 0.00029 40.8 -0.1 11 99-109 24-34 (301)
32 1t3o_A Carbon storage regulato 32.9 12 0.00041 33.5 0.8 9 69-77 9-17 (95)
33 2ilr_A Protein FACE, fanconi a 31.9 1.7E+02 0.0057 30.7 9.3 193 509-712 42-244 (264)
34 3b9f_I Protein C inhibitor; mi 31.2 10 0.00035 41.7 0.0 9 396-404 341-349 (395)
35 3a5i_A Flagellar biosynthesis 30.9 10 0.00035 41.9 0.0 15 194-208 51-65 (389)
36 3dfz_A SIRC, precorrin-2 dehyd 30.9 10 0.00035 38.7 0.0 11 516-526 190-200 (223)
37 1uoz_A Putative cellulase; hyd 29.9 12 0.00039 40.4 0.2 7 143-149 61-67 (315)
38 4e4j_A Arginine deiminase; L-a 29.6 14 0.00048 41.1 0.8 11 98-108 32-42 (433)
39 1uoz_A Putative cellulase; hyd 28.3 18 0.0006 39.0 1.2 6 111-116 30-35 (315)
40 2qrj_A Saccharopine dehydrogen 27.9 13 0.00043 41.3 0.0 9 69-77 10-18 (394)
41 2axq_A Saccharopine dehydrogen 27.9 13 0.00043 42.0 0.0 13 425-437 261-273 (467)
42 2yln_A Putative ABC transporte 27.8 13 0.00043 37.7 0.0 10 58-67 3-12 (283)
43 2bgs_A Aldose reductase; holoe 27.5 13 0.00044 40.1 0.0 18 63-80 3-20 (344)
44 1yx4_A 26S proteasome non-ATPa 27.0 13 0.00046 35.0 0.0 13 63-75 3-15 (132)
45 3oc3_A Helicase MOT1, MOT1; re 26.9 13 0.00046 43.3 0.0 64 513-580 386-452 (800)
46 2avr_X Adhesion A; antiparalle 26.7 56 0.0019 30.4 4.1 32 14-48 73-104 (119)
47 3k9f_C DNA topoisomerase 4 sub 26.7 14 0.00046 38.9 0.0 13 256-268 94-106 (268)
48 2bzb_A Conserved domain protei 26.1 1.1E+02 0.0037 25.2 5.3 17 37-53 34-50 (62)
49 3tc3_A UV damage endonuclease; 25.2 14 0.00048 39.7 -0.2 8 100-107 24-31 (310)
50 2xci_A KDO-transferase, 3-deox 24.9 15 0.00052 39.3 0.0 6 111-116 36-41 (374)
51 3hjl_A Flagellar motor switch 24.5 6.7E+02 0.023 26.8 15.5 45 687-736 197-241 (329)
52 3fwy_A Light-independent proto 24.4 16 0.00054 38.9 0.0 7 74-80 17-23 (314)
53 3fyq_A CG6831-PA (talin); 5-he 24.4 31 0.0011 34.7 2.1 16 38-53 173-188 (199)
54 4g2c_A DYP2; DYE peroxidase, o 24.2 16 0.00055 41.6 0.0 10 311-321 309-318 (493)
55 2oar_A Large-conductance mecha 24.1 16 0.00056 36.1 0.0 7 672-678 136-142 (174)
56 1k8w_A TRNA pseudouridine synt 23.5 17 0.00058 39.4 0.0 12 258-269 120-131 (327)
57 1k8w_A TRNA pseudouridine synt 23.1 21 0.00071 38.7 0.6 13 114-126 31-43 (327)
58 3tcm_A Alanine aminotransferas 23.0 18 0.0006 40.4 0.0 8 318-325 184-191 (500)
59 3b0g_A NII3, nitrite reductase 22.4 18 0.00063 42.0 0.0 13 63-75 3-15 (591)
60 3ga4_A Dolichyl-diphosphooligo 22.4 19 0.00064 35.5 0.0 12 38-49 141-152 (178)
61 4grv_A Neurotensin receptor ty 22.2 19 0.00064 40.0 0.0 10 57-66 498-507 (510)
62 4b1m_A Levanase; hydrolase, CB 22.2 19 0.00064 35.2 0.0 13 63-75 3-15 (185)
63 3bk6_A PH stomatin; archaea, t 22.2 80 0.0027 30.5 4.6 19 10-28 114-132 (188)
64 2apo_A Probable tRNA pseudouri 22.1 19 0.00064 39.4 0.0 17 203-219 93-109 (357)
65 1wue_A Mandelate racemase/muco 21.9 19 0.00065 39.1 0.0 15 64-78 2-16 (386)
66 3icx_A PRE mRNA splicing prote 21.7 34 0.0012 35.7 1.9 13 38-50 231-243 (255)
67 2j23_A Thioredoxin; immune pro 21.7 27 0.00093 30.6 1.0 13 69-81 8-20 (121)
68 2l72_A Tgadf, actin depolymeri 21.2 20 0.00069 33.8 0.0 21 246-266 99-119 (139)
69 3oc3_A Helicase MOT1, MOT1; re 20.3 19 0.00065 42.1 -0.4 22 113-134 26-47 (800)
70 1u9p_A PARC; unknown function; 20.3 58 0.002 30.3 2.9 40 11-57 71-110 (120)
71 1wuf_A Hypothetical protein LI 20.2 22 0.00075 38.8 0.0 17 64-80 2-18 (393)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=4.7e-59 Score=508.18 Aligned_cols=313 Identities=32% Similarity=0.582 Sum_probs=300.7
Q ss_pred hHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhc
Q 038006 486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEE 565 (808)
Q Consensus 486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l 565 (808)
.|+++.|+++++|+|++|||+||++|+.+++++++.|+.++.+++.+||+|+||||||||++++++++++..| ++.+
T Consensus 20 ~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i---~~~i 96 (351)
T 3gvo_A 20 QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL---ATRI 96 (351)
T ss_dssp CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHH---HHHH
T ss_pred CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHH---HHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999887 5677
Q ss_pred cchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHH
Q 038006 566 PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV 645 (808)
Q Consensus 566 ~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv 645 (808)
.+++++|+.|+|||+|||++++.+.++++ ..+++++.+++..|++|++||||||+++++++++.+.+ |++.+.+++.
T Consensus 97 ~g~~~~l~~~~~G~rvvQk~le~~~~~~~-~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~--i~~~~~~~~~ 173 (351)
T 3gvo_A 97 RGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF--IIDAFKGQVF 173 (351)
T ss_dssp TTCHHHHHTSTTHHHHHHHHHHHSCHHHH-HHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH--HHHHTTTTHH
T ss_pred HhhHHHHhhCHHhHHHHHHHHHhCCHHHH-HHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHH--HHHHHHHHHH
Confidence 99999999999999999999999987655 56779999999999999999999999999999999999 9999999999
Q ss_pred HHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcch
Q 038006 646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS 725 (808)
Q Consensus 646 ~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyG 725 (808)
.+++|+|||+|||+||++++++++..|+++|.+++..|++|+|||||||++|+.++++.+..|++.|++++..|+++|||
T Consensus 174 ~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~g 253 (351)
T 3gvo_A 174 VLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA 253 (351)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTH
T ss_pred HHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-hhhHHHHHHHHhCC-----chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcc
Q 038006 726 SHVVEKCLKHF-GESRSQIVHELLSV-----PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCK 798 (808)
Q Consensus 726 S~VLEKcL~~a-~k~Rk~II~eLl~~-----~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~Gk 798 (808)
|+|+|+||+++ ++.|+.|+++++.. +.+..|++|+|||||||++|+.+++.+++.|++.|+|+ +.|++++||+
T Consensus 254 s~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~~~~L~~~~~g~ 333 (351)
T 3gvo_A 254 SNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGK 333 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHTTSTTTH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 99999999999 88999999999963 36999999999999999999999999999999999999 9999999999
Q ss_pred hhhhhh
Q 038006 799 RIFSRN 804 (808)
Q Consensus 799 rVls~~ 804 (808)
+|++++
T Consensus 334 ~i~~kl 339 (351)
T 3gvo_A 334 HILAKL 339 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 2
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.4e-57 Score=491.81 Aligned_cols=316 Identities=41% Similarity=0.624 Sum_probs=296.0
Q ss_pred chHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh
Q 038006 485 SSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE 564 (808)
Q Consensus 485 ~iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~ 564 (808)
.++++++|+++++|+|++|||+||++|+.++++++..|++++.+++.+||+|+|||||+||++++++++++..| +..
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i---~~~ 82 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVL---TKI 82 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH---HHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHH---HHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999887 566
Q ss_pred ccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHH
Q 038006 565 EPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFC 644 (808)
Q Consensus 565 l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~l 644 (808)
+.+++.+|+.|+|||||||++++.++++++...+++++.+++..|++|++||||||++|++++++.+.+ |++.+.+++
T Consensus 83 ~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~--i~~~l~~~~ 160 (333)
T 3bwt_A 83 SSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQF--IFDAISDSC 160 (333)
T ss_dssp HGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHH--HHHHHHHSH
T ss_pred HHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHH--HHHHHHHHH
Confidence 789999999999999999999999998888888999999999999999999999999999998888888 999999999
Q ss_pred HHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchh----HHHHHHHHHHhhhhcc
Q 038006 645 VDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSV----SANLLSQFKGHYVHLS 720 (808)
Q Consensus 645 v~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~----r~~Ii~~Lrg~lv~Ls 720 (808)
..+++|+|||+|||+|+++++++++..|++++.+++..|++|+|||||||++|+.++++. +..|++.|++++.+|+
T Consensus 161 ~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls 240 (333)
T 3bwt_A 161 IDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELS 240 (333)
T ss_dssp HHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHH
T ss_pred HHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876543 6789999999999999
Q ss_pred cCcchHHHHHHHHhhhhhhHHHHHHHHhCC---chHHHHhcCCChhHHHHHHHhcCChh---hHHHHHHHHhcc--cCcc
Q 038006 721 TQKFSSHVVEKCLKHFGESRSQIVHELLSV---PHFEQLLQDPFANYVIQCALSVTKGP---LHASLIEAARRH--TNLR 792 (808)
Q Consensus 721 ~~KyGS~VLEKcL~~a~k~Rk~II~eLl~~---~~L~~La~DqyGNYVIQklL~~ad~~---qre~Ll~eL~ph--~~Lr 792 (808)
++||||+|+++||+.+. .++.++.+++.. +++..|+.|+|||||||++|+.+++. +++.|+++|+|+ +.|+
T Consensus 241 ~~k~gs~Vvek~l~~~~-~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr 319 (333)
T 3bwt_A 241 IHKFGSNVIEKILKTAI-VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIR 319 (333)
T ss_dssp TSTTHHHHHHHHHTSHH-HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGG
T ss_pred cccHHHHHHHHHHcccc-hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhc
Confidence 99999999999999863 367788898853 57999999999999999999988753 789999999999 6999
Q ss_pred CCCCcchhhhhhcc
Q 038006 793 TSPYCKRIFSRNIS 806 (808)
Q Consensus 793 ~sp~GkrVls~~~~ 806 (808)
++||||+|++++-|
T Consensus 320 ~~~~G~~i~~~l~~ 333 (333)
T 3bwt_A 320 NTPHGKRIIGMLHL 333 (333)
T ss_dssp GSHHHHHHHTTSCC
T ss_pred CCCCHHHHHHHhcC
Confidence 99999999998754
No 3
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2.1e-57 Score=498.28 Aligned_cols=315 Identities=28% Similarity=0.470 Sum_probs=295.0
Q ss_pred cchHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHh
Q 038006 484 SSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVT 563 (808)
Q Consensus 484 ~~iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~ 563 (808)
-..++++.|+++++|+|++|||+||++|+.++++++..|++++.+++.+|++|+||||||||+|++++++++..| ++
T Consensus 23 ~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i---~~ 99 (369)
T 3k49_A 23 NMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTL---VD 99 (369)
T ss_dssp CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHH---HH
T ss_pred ceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHH---HH
Confidence 347889999999999999999999999999999999999999999999999999999999999999999999887 66
Q ss_pred hccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHH
Q 038006 564 EEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKF 643 (808)
Q Consensus 564 ~l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~ 643 (808)
.+.+++.+|+.|+|||+|||++++.++.++ ...++.++.+++..|++|++||||||+++++++++.+.+ |++.+.++
T Consensus 100 ~~~g~~~~L~~~~~G~rVlQk~le~~~~~q-~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~--i~~~~~~~ 176 (369)
T 3k49_A 100 QFKGNMKQLSLQMYACRVIQKALEYIDSNQ-RIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPF--ILSSLTGH 176 (369)
T ss_dssp HHTTCHHHHHHSTTHHHHHHHHHHHSCHHH-HHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHH--HHHHHTTT
T ss_pred HHhhhHHHHhcChhhHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHH--HHHHHHHH
Confidence 779999999999999999999999987654 456778999999999999999999999999998888899 99999999
Q ss_pred HHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchh------HHHHHHHHHHhhh
Q 038006 644 CVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSV------SANLLSQFKGHYV 717 (808)
Q Consensus 644 lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~------r~~Ii~~Lrg~lv 717 (808)
+..+++|+|||+|||+|+++++++++..|++++.+++..|++|+|||||||++|+.++++. +..|++.|.++++
T Consensus 177 ~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~ 256 (369)
T 3k49_A 177 IYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVV 256 (369)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765 5789999999999
Q ss_pred hcccCcchHHHHHHHHhhh-hhhHHHHHHHHhCC-----------chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHH
Q 038006 718 HLSTQKFSSHVVEKCLKHF-GESRSQIVHELLSV-----------PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAA 785 (808)
Q Consensus 718 ~Ls~~KyGS~VLEKcL~~a-~k~Rk~II~eLl~~-----------~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL 785 (808)
+|+++||||+|+++||..+ ++.|+.|+++++.. +.+..|++|+|||||||++|+.+++.+++.|+.+|
T Consensus 257 ~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i 336 (369)
T 3k49_A 257 EYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAI 336 (369)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999 89999999999863 24889999999999999999999999999999999
Q ss_pred hcc-cCccC-CCCcchhhhhh
Q 038006 786 RRH-TNLRT-SPYCKRIFSRN 804 (808)
Q Consensus 786 ~ph-~~Lr~-sp~GkrVls~~ 804 (808)
+|+ +.|+. ++||++|++++
T Consensus 337 ~p~l~~L~~~~~~G~~~~~~~ 357 (369)
T 3k49_A 337 RAYLDKLNKSNSLGNRHLASV 357 (369)
T ss_dssp HHHHHHHHHCC--CCCCCHHH
T ss_pred HHHHHHHhccccCcchHHHHH
Confidence 999 99976 59999999875
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=3.5e-55 Score=488.89 Aligned_cols=314 Identities=25% Similarity=0.447 Sum_probs=283.5
Q ss_pred chHHHH--hhhHHHHhhcCCccHHHHhhhccC-CHHHHHHHHHHHhcc---hhhhccccchhHHHHHHHhhCCH------
Q 038006 485 SSLADV--RGYIYSMAKDQNGCRFLQRVFDEG-TFLDLQIIFDEVIDH---IVELMMEQFGNYLVQKLLNVCTE------ 552 (808)
Q Consensus 485 ~iLeei--~GkI~eLA~Dq~GSRVLQklLE~~-t~Eq~~~I~~eL~~~---~~~L~~DqfGNHVVQKLLe~~se------ 552 (808)
..|.++ +|+++++|+||+|||+||++|+.+ +++++..||+++.++ +.+||+|+||||||||+|+++++
T Consensus 20 ~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~ 99 (412)
T 3k62_A 20 LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGY 99 (412)
T ss_dssp CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTH
T ss_pred CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCccccccc
Confidence 457777 799999999999999999999997 999999999999986 89999999999999999999999
Q ss_pred -HHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHh--ccCccccccccCCchHHHHHHhhcccc
Q 038006 553 -EQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL--KPGFLDLIKDLNGNHVLQRCLQCLSNE 629 (808)
Q Consensus 553 -eqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL--~~~~~eLa~Dq~GNhVIQkILe~~s~~ 629 (808)
+++..| +..+.+++++|+.|+|||||||++++.++.+ +...+++++ .+.+..|++|++||||||++|++++++
T Consensus 100 ~~q~~~i---~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~-~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~ 175 (412)
T 3k62_A 100 TKRQEKL---KNFISSQMTDMCLDKFACRVIQSSLQNMDLS-LACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLK 175 (412)
T ss_dssp HHHHHHH---HHHHHHTHHHHHHSTTHHHHHHHHHHHSCHH-HHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHH
T ss_pred HHHHHHH---HHHHHHHHHHHHcChhhhHHHHHHHHhCCHH-HHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHH
Confidence 888776 5667899999999999999999999998765 456777898 688999999999999999999999888
Q ss_pred chhHHHHHHHHH--HHHHHHhcCccchhhHHHHHhhcch------------hhHH----HHHHHHHHhHHhhhcCCCchH
Q 038006 630 DNEVYLFFDAAA--KFCVDIATHQHGCCVLQRCIAHSIG------------RHRD----KLITEISKNGRHLAQDPFGNY 691 (808)
Q Consensus 630 ~~~~~~Iie~L~--~~lv~LS~~k~GS~VVQkcLe~as~------------e~r~----~LIeeL~~~l~~La~DqyGNy 691 (808)
.+++ |++.+. +++.++++|+|||+|||+||+++++ +++. .|+++|..++..|++|+||||
T Consensus 176 ~~~~--I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNy 253 (412)
T 3k62_A 176 NWEF--IVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANY 253 (412)
T ss_dssp HHHH--HHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHH
T ss_pred HHHH--HHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccH
Confidence 8888 999988 5999999999999999999998873 3443 467778889999999999999
Q ss_pred HHHHHHhhcCchh-HHHHHH-HHHHhhhhcccCcchHHHHHHHHhhh-hhhHHHHHHHHhCC---------chHHHHhcC
Q 038006 692 VVQYIIELKIPSV-SANLLS-QFKGHYVHLSTQKFSSHVVEKCLKHF-GESRSQIVHELLSV---------PHFEQLLQD 759 (808)
Q Consensus 692 VIQkLLe~~~~k~-r~~Ii~-~Lrg~lv~Ls~~KyGS~VLEKcL~~a-~k~Rk~II~eLl~~---------~~L~~La~D 759 (808)
|||++|+++.+.. +..|++ .|.++++.||++||||+||||||+.+ ++.|..|+++|+.. +.|..|++|
T Consensus 254 ViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~D 333 (412)
T 3k62_A 254 IIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFH 333 (412)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHS
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcC
Confidence 9999999987764 778887 59999999999999999999999999 88999999999842 469999999
Q ss_pred CChhHHHHHHHhcCChh--------------------hHHHHHHHHhcc-cCccCCCCcchhhhhh
Q 038006 760 PFANYVIQCALSVTKGP--------------------LHASLIEAARRH-TNLRTSPYCKRIFSRN 804 (808)
Q Consensus 760 qyGNYVIQklL~~ad~~--------------------qre~Ll~eL~ph-~~Lr~sp~GkrVls~~ 804 (808)
+|||||||++|+.+++. +++.|+..++|+ +.|+.++|||+|++++
T Consensus 334 qyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l 399 (412)
T 3k62_A 334 QFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETL 399 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHH
Confidence 99999999999998643 368899999999 9999999999999986
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.7e-55 Score=482.14 Aligned_cols=321 Identities=22% Similarity=0.350 Sum_probs=282.2
Q ss_pred ccccCcchHHHH--hhhHHHHhhcCCccHHHHhhhccCCHHH-HHHHHHHHh---cchhhhccccchhHHHHHHHhhCCH
Q 038006 479 HLLSSSSSLADV--RGYIYSMAKDQNGCRFLQRVFDEGTFLD-LQIIFDEVI---DHIVELMMEQFGNYLVQKLLNVCTE 552 (808)
Q Consensus 479 ~l~qk~~iLeei--~GkI~eLA~Dq~GSRVLQklLE~~t~Eq-~~~I~~eL~---~~~~~L~~DqfGNHVVQKLLe~~se 552 (808)
+..+....|.++ +|+++++|+||+|||+||+.|+.+++++ +..|++++. +++.+||+|+||||||||+++++++
T Consensus 5 ~~~~~~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~ 84 (382)
T 3v71_A 5 PVAPIFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATP 84 (382)
T ss_dssp ------CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCH
T ss_pred CCCcccCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCH
Confidence 334566689998 7999999999999999999999998765 688999985 6889999999999999999999999
Q ss_pred HHHHHHHHHHhhccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhcc-CccccccccCCchHHHHHHhhccccch
Q 038006 553 EQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKP-GFLDLIKDLNGNHVLQRCLQCLSNEDN 631 (808)
Q Consensus 553 eqr~~Ii~iL~~l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~-~~~eLa~Dq~GNhVIQkILe~~s~~~~ 631 (808)
+++..|+.. .+.++++.|+.|+||||||||+++.++.+++. .+++++.+ ++..|++|++||||||+||++++++.+
T Consensus 85 ~~~~~li~~--~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~-~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~ 161 (382)
T 3v71_A 85 AEQRELLRQ--MIDGGLLAMCKDKFACRVVQLALQKFDHSNVF-QLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMW 161 (382)
T ss_dssp HHHHHHHHH--HHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHH-HHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTS
T ss_pred HHHHHHHHH--HhcchHHHHHhCccchHHHHHHHHHCCHHHHH-HHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHH
Confidence 888777422 24799999999999999999999999876654 56688887 899999999999999999999999899
Q ss_pred hHHHHHHHHH--HHHHHHhcCccchhhHHHHHhhcchhh-----------HHHHHHHHHHhHHhhhcCCCchHHHHHHHh
Q 038006 632 EVYLFFDAAA--KFCVDIATHQHGCCVLQRCIAHSIGRH-----------RDKLITEISKNGRHLAQDPFGNYVVQYIIE 698 (808)
Q Consensus 632 ~~~~Iie~L~--~~lv~LS~~k~GS~VVQkcLe~as~e~-----------r~~LIeeL~~~l~~La~DqyGNyVIQkLLe 698 (808)
.+ |++.+. +++.++++|+|||+|||+||+++++++ ...|+++|..++..|++|+|||||||++|+
T Consensus 162 ~~--Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~ 239 (382)
T 3v71_A 162 TF--FVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIK 239 (382)
T ss_dssp HH--HHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHT
T ss_pred HH--HHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHh
Confidence 99 999987 699999999999999999999987643 235677788888999999999999999999
Q ss_pred hcCc--hhHHHHHHH-HHHhhhhcccCcchHHHHHHHHhhh-hhhHHHHHHHHhCC---------chHHHHhcCCChhHH
Q 038006 699 LKIP--SVSANLLSQ-FKGHYVHLSTQKFSSHVVEKCLKHF-GESRSQIVHELLSV---------PHFEQLLQDPFANYV 765 (808)
Q Consensus 699 ~~~~--k~r~~Ii~~-Lrg~lv~Ls~~KyGS~VLEKcL~~a-~k~Rk~II~eLl~~---------~~L~~La~DqyGNYV 765 (808)
.+.+ +.+..|+.. |.++++.|+++||||+|+||||+.+ ++.|..|+++|+.. +.|..|+.|+|||||
T Consensus 240 ~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyV 319 (382)
T 3v71_A 240 SSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYV 319 (382)
T ss_dssp CCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHH
Confidence 8764 468889975 9999999999999999999999999 89999999999962 479999999999999
Q ss_pred HHHHHhcCChh-------------------hHHHHHHHHhcc-cCccCCCCcchhhhhh
Q 038006 766 IQCALSVTKGP-------------------LHASLIEAARRH-TNLRTSPYCKRIFSRN 804 (808)
Q Consensus 766 IQklL~~ad~~-------------------qre~Ll~eL~ph-~~Lr~sp~GkrVls~~ 804 (808)
||++|+.+++. .++.|++.+++| ..|+.++|||+|++++
T Consensus 320 vQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l 378 (382)
T 3v71_A 320 VQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSV 378 (382)
T ss_dssp HHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHH
Confidence 99999998752 368999999999 9999999999999976
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.2e-48 Score=424.10 Aligned_cols=299 Identities=20% Similarity=0.318 Sum_probs=281.7
Q ss_pred ccccCcccccCccccccCcccccccccccccccccCCCCcccccCCCccccCcc----------hHHHHhhhHHHHhhcC
Q 038006 432 LKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSS----------SLADVRGYIYSMAKDQ 501 (808)
Q Consensus 432 ~~~f~~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~----------iLeei~GkI~eLA~Dq 501 (808)
...+++||+||||+|+.+..+++++++.+|.++.++...+|.+.++++.+||.. +++++.|+++++|+|+
T Consensus 28 i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~ 107 (351)
T 3gvo_A 28 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM 107 (351)
T ss_dssp HHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTST
T ss_pred HHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCH
Confidence 445899999999999999999999999999999999888889999999998862 7789999999999999
Q ss_pred CccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccchh
Q 038006 502 NGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRV 581 (808)
Q Consensus 502 ~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcrV 581 (808)
+||||||++|+.++++++..++.++.+++..|++|+|||||+|+++++++++++..| ++.+.+++.+|++|+|||+|
T Consensus 108 ~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i---~~~~~~~~~~ls~~~~G~~V 184 (351)
T 3gvo_A 108 YGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFI---IDAFKGQVFVLSTHPYGCRV 184 (351)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHH---HHHTTTTHHHHHTSTTHHHH
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHH---HHHHHHHHHHHHhCcHhHHH
Confidence 999999999999999999999999999999999999999999999999999988877 66789999999999999999
Q ss_pred HhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q 038006 582 VQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCI 661 (808)
Q Consensus 582 VQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcL 661 (808)
+|++++.+..+ +...+++++.+++..|+.|+|||||||++|+++.++.+.. |++.+.+++..+++|+|||+|||+|+
T Consensus 185 vq~~le~~~~~-~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~--i~~~l~~~~~~Ls~~k~gs~Vvek~l 261 (351)
T 3gvo_A 185 IQRILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK--IVSEIRGKVLALSQHKFASNVVEKCV 261 (351)
T ss_dssp HHHHHHHSCHH-HHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHH--HHHTTTTCHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHCCHH-HHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHH--HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99999998654 4566789999999999999999999999999999888888 99999999999999999999999999
Q ss_pred hhcchhhHHHHHHHHHH-------hHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHh
Q 038006 662 AHSIGRHRDKLITEISK-------NGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLK 734 (808)
Q Consensus 662 e~as~e~r~~LIeeL~~-------~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~ 734 (808)
++++++++..|++++.. .+..|++|+|||||||++|+.++++.|..|++.|++++..|+.++||++|++++-+
T Consensus 262 ~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~ 341 (351)
T 3gvo_A 262 THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 341 (351)
T ss_dssp HHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999999986 68899999999999999999999999999999999999999999999999999887
Q ss_pred hh
Q 038006 735 HF 736 (808)
Q Consensus 735 ~a 736 (808)
..
T Consensus 342 ~~ 343 (351)
T 3gvo_A 342 YY 343 (351)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 7
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=4e-47 Score=423.98 Aligned_cols=329 Identities=15% Similarity=0.174 Sum_probs=281.4
Q ss_pred cccccccccccCCCCCCCCcccCCCeeecccccccccccCCCCccccCcccccCccccccCccc-ccccccccccccccC
Q 038006 389 NNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKI-CKHDGCAYDGVICDN 467 (808)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~g~~~~~~~~~g~~~~~~f~~dq~gs~f~qqk~~~~-~~~e~~~~~~~ic~~ 467 (808)
|+-.| .|+.++++++.. ...|+ .+..+| ....|++||+||||+|+++..+ ++++++.+|.++.++
T Consensus 2 ~~~~~--~w~~~~~~~~~~-----~~~L~-----~~~~~G--~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 2 NNVLP--TWSLDSNGEMRS-----RLSLS-----EVLDSG--DLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp ---CC--GGGBCTTSSBCT-----TCCHH-----HHHHHT--CHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred CCcCc--cchhcccCCCCC-----CCcHH-----HHHhCC--CcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 45566 899999999883 33333 444455 4567999999999999999886 788999999999886
Q ss_pred ---CCCcccccCCCccccCcc-----------------hHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHH-
Q 038006 468 ---GQSLMDIRCPLHLLSSSS-----------------SLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEV- 526 (808)
Q Consensus 468 ---~~~~~~~~~~~~l~qk~~-----------------iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL- 526 (808)
...+|.+.++++++||.. +++.+.|+++.||+|++|||+||++|+.++++++..|+.++
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred hhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 356788999999988752 35678999999999999999999999999999999999999
Q ss_pred -hcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhcc--chhhhhhcCcccchhHhHHHhhcCcH-----------
Q 038006 527 -IDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEP--GQLVRVCLNTYGTRVVQKLIETLKTR----------- 592 (808)
Q Consensus 527 -~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~--g~iveLa~hkyGcrVVQKLLE~ls~~----------- 592 (808)
.+++..|++|+||||||||+|+.++++.+..|+ +.+. +++.+|++|+|||+|||++++.+..+
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~---~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~ 224 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIV---DFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQ 224 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHH---HHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHH
T ss_pred ccccHHHHHhCccccHHHHHHHHhCCHHHHHHHH---HHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhH
Confidence 689999999999999999999999999998874 4444 59999999999999999999998742
Q ss_pred HHH----HHHHHHhccCccccccccCCchHHHHHHhhccccc-hhHHHHHH-HHHHHHHHHhcCccchhhHHHHHhhcch
Q 038006 593 QQV----SLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNED-NEVYLFFD-AAAKFCVDIATHQHGCCVLQRCIAHSIG 666 (808)
Q Consensus 593 qqi----~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~-~~~~~Iie-~L~~~lv~LS~~k~GS~VVQkcLe~as~ 666 (808)
++. ..+++++..++..|+.|+|||||||++|+.+.++. +.. |++ .+.+++++||+|||||+|||+||+++++
T Consensus 225 ~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~--ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~ 302 (412)
T 3k62_A 225 NLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYREC--IIEKCLMRNLLSLSQEKFASHVVEKAFLHAPL 302 (412)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHH--HHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHH--HHHHHHHHHHHHHhcccHhHHHHHHHHHhCCH
Confidence 222 34678888999999999999999999999977653 455 776 5899999999999999999999999999
Q ss_pred hhHHHHHHHHHHh-----------HHhhhcCCCchHHHHHHHhhcCch--------------------hHHHHHHHHHHh
Q 038006 667 RHRDKLITEISKN-----------GRHLAQDPFGNYVVQYIIELKIPS--------------------VSANLLSQFKGH 715 (808)
Q Consensus 667 e~r~~LIeeL~~~-----------l~~La~DqyGNyVIQkLLe~~~~k--------------------~r~~Ii~~Lrg~ 715 (808)
+.+..|+++|... +..|++|+|||||||++|+.+++. .+..|+..++++
T Consensus 303 ~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~ 382 (412)
T 3k62_A 303 ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKE 382 (412)
T ss_dssp HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999863 678999999999999999987442 146789999999
Q ss_pred hhhcccCcchHHHHHHHHhhh
Q 038006 716 YVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 716 lv~Ls~~KyGS~VLEKcL~~a 736 (808)
...|...+||++|+.++-+..
T Consensus 383 ~~~L~~~~~Gk~i~~~l~~~~ 403 (412)
T 3k62_A 383 RHRLSRFSSGKKMIETLANLR 403 (412)
T ss_dssp HHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCccHHHHHHHHhh
Confidence 999999999999999876543
No 8
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-44 Score=400.65 Aligned_cols=300 Identities=15% Similarity=0.194 Sum_probs=260.9
Q ss_pred CccccCcccccCccccccCccccccc-cccccccccc---CCCCcccccCCCccccCcc----------hHHH-HhhhHH
Q 038006 431 SLKGYKQNNLNEIVTRNQPVKICKHD-GCAYDGVICD---NGQSLMDIRCPLHLLSSSS----------SLAD-VRGYIY 495 (808)
Q Consensus 431 ~~~~f~~dq~gs~f~qqk~~~~~~~e-~~~~~~~ic~---~~~~~~~~~~~~~l~qk~~----------iLee-i~GkI~ 495 (808)
....|++||+||||+|+++...+++| ++.+|.++.+ +...+|.++++++.+||.. ++.+ +.|+++
T Consensus 21 ~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~ 100 (382)
T 3v71_A 21 QLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLL 100 (382)
T ss_dssp CHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHH
T ss_pred CEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHH
Confidence 45669999999999999998887666 5778876543 3446678999999998862 4555 589999
Q ss_pred HHhhcCCccHHHHhhhccCCHHHHHHHHHHHhc-chhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhcc--chhhhh
Q 038006 496 SMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVID-HIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEP--GQLVRV 572 (808)
Q Consensus 496 eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~-~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~--g~iveL 572 (808)
.||+|++|||+||++|+..+++++..++.++.+ ++..|++|+||||||||+|++++++.+..|+ +.+. +++.++
T Consensus 101 ~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii---~~~~~~~~~~~l 177 (382)
T 3v71_A 101 AMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFV---HFLSSGDSLMAV 177 (382)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHH---HHHHSTTHHHHH
T ss_pred HHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHH---HHHhcccchHhH
Confidence 999999999999999999999999999999998 8999999999999999999999999888774 4443 699999
Q ss_pred hcCcccchhHhHHHhhcCcHH----------HHHHHHHHhccCccccccccCCchHHHHHHhhccc--cchhHHHHHH-H
Q 038006 573 CLNTYGTRVVQKLIETLKTRQ----------QVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSN--EDNEVYLFFD-A 639 (808)
Q Consensus 573 a~hkyGcrVVQKLLE~ls~~q----------qi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~--~~~~~~~Iie-~ 639 (808)
++|+|||+|||++++.+..++ .+..+++++.+++..|+.|+|||||||++|+.+.. ..+.. |++ .
T Consensus 178 a~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~--ii~~~ 255 (382)
T 3v71_A 178 CQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDT--IIDKC 255 (382)
T ss_dssp HHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHH--HHHHT
T ss_pred hcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHH--HHHHH
Confidence 999999999999999987532 23456788889999999999999999999998754 23556 776 4
Q ss_pred HHHHHHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHH-----------hHHhhhcCCCchHHHHHHHhhcCch-----
Q 038006 640 AAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISK-----------NGRHLAQDPFGNYVVQYIIELKIPS----- 703 (808)
Q Consensus 640 L~~~lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~-----------~l~~La~DqyGNyVIQkLLe~~~~k----- 703 (808)
+.++++.||+|+|||+|||+||++++++++..|+++|.. .+..|++|+|||||||++|+.+++.
T Consensus 256 l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~ 335 (382)
T 3v71_A 256 LLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKE 335 (382)
T ss_dssp TTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccch
Confidence 899999999999999999999999999999999999985 5778999999999999999987652
Q ss_pred --------------hHHHHHHHHHHhhhhcccCcchHHHHHHHHhh
Q 038006 704 --------------VSANLLSQFKGHYVHLSTQKFSSHVVEKCLKH 735 (808)
Q Consensus 704 --------------~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~ 735 (808)
.+..|+..+++++..|...+||++|++++-++
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 336 ERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp --CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred hcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 14688999999999999999999999998765
No 9
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=7.6e-45 Score=398.74 Aligned_cols=300 Identities=17% Similarity=0.226 Sum_probs=272.8
Q ss_pred CccccCcccccCccccccCcccccccccccccccccCCCCcccccCCCccccCc----------chHHHHhhhHHHHhhc
Q 038006 431 SLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSS----------SSLADVRGYIYSMAKD 500 (808)
Q Consensus 431 ~~~~f~~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~----------~iLeei~GkI~eLA~D 500 (808)
....+++|++|||++|+.+..++++++..+|.++.++...++.+.++++.+||. .+++++.|++..++++
T Consensus 32 ~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~ 111 (369)
T 3k49_A 32 HSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQ 111 (369)
T ss_dssp CHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcC
Confidence 344489999999999999999999999999999999988888899999999876 2788899999999999
Q ss_pred CCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcccch
Q 038006 501 QNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTR 580 (808)
Q Consensus 501 q~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hkyGcr 580 (808)
++||||||++|+.++++++..++.++.+++..|++|+|||||||++++.++++.+..| ++.+.+++.+|+.|+|||+
T Consensus 112 ~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i---~~~~~~~~~~ls~~~~Gs~ 188 (369)
T 3k49_A 112 MYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFI---LSSLTGHIYHLSTHSYGCR 188 (369)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHH---HHHHTTTHHHHHTSTTHHH
T ss_pred hhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHH---HHHHHHHHHHHhCCCccCc
Confidence 9999999999999999999999999999999999999999999999999999888877 5667899999999999999
Q ss_pred hHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccc------hhHHHHHHHHHHHHHHHhcCccch
Q 038006 581 VVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNED------NEVYLFFDAAAKFCVDIATHQHGC 654 (808)
Q Consensus 581 VVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~------~~~~~Iie~L~~~lv~LS~~k~GS 654 (808)
|+|++++.++.++ ...+++++.+.+..|+.|+|||||||++|++..+.. +.. |++.+.+++.++++|+|||
T Consensus 189 Vvq~~l~~~~~~~-~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~--i~~~l~~~~~~Ls~~k~gS 265 (369)
T 3k49_A 189 VIQRLLEFGSSED-QESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQE--IIETVANNVVEYSKHKFAS 265 (369)
T ss_dssp HHHHHHHHSCHHH-HHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHH--HHHHHHTTHHHHHTSTTHH
T ss_pred HHHHHHHhCCHHH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHH--HHHHHHHHHHHHHhhhHhh
Confidence 9999999987554 456779999999999999999999999999988765 345 8999999999999999999
Q ss_pred hhHHHHHhhcchhhHHHHHHHHHH-------------hHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhccc
Q 038006 655 CVLQRCIAHSIGRHRDKLITEISK-------------NGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721 (808)
Q Consensus 655 ~VVQkcLe~as~e~r~~LIeeL~~-------------~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~ 721 (808)
+||++||++++++.+..|+++++. .+..|++|+|||||||++|+.+++..+..|++.|++++..|..
T Consensus 266 ~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~p~l~~L~~ 345 (369)
T 3k49_A 266 NVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNK 345 (369)
T ss_dssp HHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 2578999999999999999999999999999999999999986
Q ss_pred -CcchHHHHHHHHhhh
Q 038006 722 -QKFSSHVVEKCLKHF 736 (808)
Q Consensus 722 -~KyGS~VLEKcL~~a 736 (808)
++||++++.++-+..
T Consensus 346 ~~~~G~~~~~~~e~~~ 361 (369)
T 3k49_A 346 SNSLGNRHLASVEKLA 361 (369)
T ss_dssp CC--CCCCCHHHHHHH
T ss_pred cccCcchHHHHHHHHH
Confidence 599999887665544
No 10
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.9e-42 Score=373.62 Aligned_cols=295 Identities=17% Similarity=0.162 Sum_probs=254.2
Q ss_pred CCCccccCcccccCccccccCcccccccccccccccccCCCCcccccCCCccccCcc----------hHHHHhhhHHHHh
Q 038006 429 RDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSS----------SLADVRGYIYSMA 498 (808)
Q Consensus 429 ~~~~~~f~~dq~gs~f~qqk~~~~~~~e~~~~~~~ic~~~~~~~~~~~~~~l~qk~~----------iLeei~GkI~eLA 498 (808)
++....++.||+|||++|+.+..++++++..+|.++.++...++.+.++++.+||.. +++++.|++..++
T Consensus 12 ~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~ 91 (333)
T 3bwt_A 12 IGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEIS 91 (333)
T ss_dssp TTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHH
Confidence 334556899999999999999999999999999998888888888999999888752 6778899999999
Q ss_pred hcCCccHHHHhhhccC-CHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhccchhhhhhcCcc
Q 038006 499 KDQNGCRFLQRVFDEG-TFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTY 577 (808)
Q Consensus 499 ~Dq~GSRVLQklLE~~-t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l~g~iveLa~hky 577 (808)
+|++||||||++|+.+ +++++..+++++.+++..|++|+|||||+|++++.++++.+..| ++.+.+++.+|+.|+|
T Consensus 92 ~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i---~~~l~~~~~~l~~~~~ 168 (333)
T 3bwt_A 92 LNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFI---FDAISDSCIDIATHRH 168 (333)
T ss_dssp HSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH---HHHHHHSHHHHHTSTT
T ss_pred hcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHhcCch
Confidence 9999999999999997 57788889999999999999999999999999999999888877 5566789999999999
Q ss_pred cchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccc----hhHHHHHHHHHHHHHHHhcCccc
Q 038006 578 GTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNED----NEVYLFFDAAAKFCVDIATHQHG 653 (808)
Q Consensus 578 GcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~----~~~~~Iie~L~~~lv~LS~~k~G 653 (808)
||+|+|++++.++. ++...+++++.+++..|+.|+|||||||++|+...+.. +.. |++.+.+++.++++++||
T Consensus 169 Gs~Vvq~~l~~~~~-~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~--ii~~l~~~~~~Ls~~k~g 245 (333)
T 3bwt_A 169 GCCVLQRCLDHGTT-EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHK--IVHLLKPRAIELSIHKFG 245 (333)
T ss_dssp HHHHHHHHHHHCCH-HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHH--HHHHHGGGHHHHHTSTTH
T ss_pred hHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHH--HHHHHHHHHHHHHcccHH
Confidence 99999999998754 45667788999999999999999999999999865533 345 888999999999999999
Q ss_pred hhhHHHHHhhcchhhHHHHHHHHHH-----hHHhhhcCCCchHHHHHHHhhcCch---hHHHHHHHHHHhh-hhcccCcc
Q 038006 654 CCVLQRCIAHSIGRHRDKLITEISK-----NGRHLAQDPFGNYVVQYIIELKIPS---VSANLLSQFKGHY-VHLSTQKF 724 (808)
Q Consensus 654 S~VVQkcLe~as~e~r~~LIeeL~~-----~l~~La~DqyGNyVIQkLLe~~~~k---~r~~Ii~~Lrg~l-v~Ls~~Ky 724 (808)
|+||++|++.+. .++.++.++.. .+..|+.|+|||||||++|+.+++. .++.|++.|++++ ..|+.++|
T Consensus 246 s~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~~~ 323 (333)
T 3bwt_A 246 SNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPH 323 (333)
T ss_dssp HHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGSHH
T ss_pred HHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCCCC
Confidence 999999999654 35677788764 5788999999999999999986543 5678899999997 79999999
Q ss_pred hHHHHHH
Q 038006 725 SSHVVEK 731 (808)
Q Consensus 725 GS~VLEK 731 (808)
|++|+.+
T Consensus 324 G~~i~~~ 330 (333)
T 3bwt_A 324 GKRIIGM 330 (333)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999865
No 11
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=75.28 E-value=2 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=15.1
Q ss_pred ccceecccchhhHHHHHHHHHHHHH
Q 038006 3 KIPISIGAGQKYQEKIEQRAEKEEK 27 (808)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (808)
.+||.-=.-.++++-.+|+.+|++|
T Consensus 725 ~M~i~sLT~E~~~kL~~q~~~k~~E 749 (803)
T 3qx3_A 725 NMSLWSLTKEKVEELIKQRDAKGRE 749 (803)
T ss_dssp TSBGGGGSHHHHHHHHHHHHHHHHH
T ss_pred CCchhhcCHHHHHHHHHHHHHHHHH
Confidence 4455433445666666777777776
No 12
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=55.83 E-value=2.4 Score=47.29 Aligned_cols=12 Identities=58% Similarity=1.190 Sum_probs=0.0
Q ss_pred ccccccccccCCC
Q 038006 63 HQHQHQHHNLVGG 75 (808)
Q Consensus 63 ~~~~~~~~~~~~~ 75 (808)
||||| |||++||
T Consensus 499 ~~~~~-~~~~~~~ 510 (510)
T 4grv_A 499 HHHHH-HHHHHGG 510 (510)
T ss_dssp -------------
T ss_pred ccccc-cccccCC
Confidence 55555 6666665
No 13
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB: 2liq_A*
Probab=58.84 E-value=2.7 Score=39.69 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=10.0
Q ss_pred ccccCCCCCccce
Q 038006 69 HHNLVGGSPFSRV 81 (808)
Q Consensus 69 ~~~~~~~~~~~~~ 81 (808)
|||++|+||--.+
T Consensus 7 ~~~~~~~~~~~kv 19 (153)
T 2lie_A 7 HHHHSGDSPAVTL 19 (153)
Confidence 7788999997653
No 14
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=48.42 E-value=3.7 Score=41.76 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=0.0
Q ss_pred ccccCCCCCccc
Q 038006 69 HHNLVGGSPFSR 80 (808)
Q Consensus 69 ~~~~~~~~~~~~ 80 (808)
|||.+|--|+.+
T Consensus 10 ~~~~~~~~~~~~ 21 (291)
T 2yjp_A 10 HHHSSGHIDDDD 21 (291)
T ss_dssp ------------
T ss_pred cccccCccccch
Confidence 455555555443
No 15
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=47.02 E-value=4.3 Score=45.02 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=4.1
Q ss_pred ccccCCCCCccceecccCCC
Q 038006 69 HHNLVGGSPFSRVSLQSTTE 88 (808)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~ 88 (808)
..++.++.||+...+=-+.|
T Consensus 13 ~~~~~~~~~m~~m~IGvpkE 32 (394)
T 2qrj_A 13 SSGHIEGRHMAAVTLHLRAE 32 (394)
T ss_dssp -----------CCEEEECCC
T ss_pred cCCCCCCCCCcceEEEEEcC
Confidence 44556678887544443444
No 16
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=46.05 E-value=4.3 Score=46.33 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=0.0
Q ss_pred ccccccccCCC-CCccceecccC
Q 038006 65 HQHQHHNLVGG-SPFSRVSLQST 86 (808)
Q Consensus 65 ~~~~~~~~~~~-~~~~~~~~~~~ 86 (808)
|||+||+.+|| |-|-.+-+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (493)
T 4g2c_A 7 HHHHHHGASGGGSHMENLYFQGA 29 (493)
T ss_dssp -----------------------
T ss_pred cccccccccCCcchhhhhhcccc
Confidence 33335666654 66666666543
No 17
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=44.87 E-value=4.8 Score=41.79 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=0.4
Q ss_pred cccccccCCCCCccce
Q 038006 66 QHQHHNLVGGSPFSRV 81 (808)
Q Consensus 66 ~~~~~~~~~~~~~~~~ 81 (808)
||+|||.+|..|..+.
T Consensus 7 ~~~~~~~~~~~~l~g~ 22 (286)
T 1jr2_A 7 HHHHHHSSGHIEGRHM 22 (286)
T ss_dssp ---------------C
T ss_pred cccccccccchhhcCC
Confidence 3336666777888763
No 18
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=42.77 E-value=5.1 Score=45.69 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=3.5
Q ss_pred ccccccC
Q 038006 176 YRMNIGG 182 (808)
Q Consensus 176 ~~~~~~~ 182 (808)
-++++|+
T Consensus 54 v~lNVgG 60 (514)
T 2r9r_B 54 VVINISG 60 (514)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 3455555
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.91 E-value=20 Score=40.69 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhhcccc
Q 038006 38 EDELGRMLNEITQNQS 53 (808)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (808)
..||..+++++..+.+
T Consensus 571 ~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 571 RQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhcCCCc
Confidence 5677777888877766
No 20
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=41.72 E-value=7.4 Score=42.67 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=6.0
Q ss_pred CCCCCCCccccc
Q 038006 110 ASPFSKPNNVLY 121 (808)
Q Consensus 110 ~~~~~~~~~~~~ 121 (808)
+.|+-++..|=+
T Consensus 27 ~~plK~t~~vd~ 38 (380)
T 3c3r_A 27 SVQLKKTSEVDL 38 (380)
T ss_dssp CCCCCCBCCCCC
T ss_pred CCCCCCCCcCCh
Confidence 344555555543
No 21
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=40.67 E-value=6 Score=43.33 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=0.0
Q ss_pred cccccccccCCCCC
Q 038006 64 QHQHQHHNLVGGSP 77 (808)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (808)
||||+||+++-.+.
T Consensus 5 ~~~~~~~~~~~~~~ 18 (393)
T 1wuf_A 5 HHHHHHHGLVPRGS 18 (393)
T ss_dssp --------------
T ss_pred cccccccCccCCCC
Confidence 34444677776644
No 22
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.47 E-value=37 Score=32.69 Aligned_cols=48 Identities=8% Similarity=0.138 Sum_probs=21.8
Q ss_pred ecccchhhHHHHHHHHHHHHHHHHHHH---hh---hhHHHHHHHHhhhhccccc
Q 038006 7 SIGAGQKYQEKIEQRAEKEEKRVIKER---MR---REEDELGRMLNEITQNQSL 54 (808)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~ 54 (808)
+++.+..-|.+-=++-++|-+.+.+|+ ++ +.-+.++.+|..|..+...
T Consensus 82 g~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l~ 135 (151)
T 1yke_B 82 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIAN 135 (151)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555544333333333222222 22 2234556677777776653
No 23
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=38.74 E-value=6.5 Score=41.60 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=3.4
Q ss_pred ccccccc
Q 038006 173 ENLYRMN 179 (808)
Q Consensus 173 ~~~~~~~ 179 (808)
+.+||+.
T Consensus 92 eglyrld 98 (564)
T 4faj_A 92 EGLYRLD 98 (564)
T ss_dssp CCSEEEC
T ss_pred HHHhhcc
Confidence 4455553
No 24
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=38.63 E-value=6.5 Score=42.62 Aligned_cols=13 Identities=0% Similarity=0.079 Sum_probs=6.5
Q ss_pred chHHHHHHHHhhh
Q 038006 724 FSSHVVEKCLKHF 736 (808)
Q Consensus 724 yGS~VLEKcL~~a 736 (808)
+|.-+.+++-...
T Consensus 261 vG~EaA~RL~~Ld 273 (332)
T 2es4_D 261 LGPEAAARAAQMQ 273 (332)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4555555554443
No 25
>1jfn_A APO(A) KIV-T6, apolipoprotein A, KIV-T6, apolipoprotein; kringle domain, protein-protein recognition, LP(A), lipid transport; NMR {Homo sapiens} SCOP: g.14.1.1
Probab=38.61 E-value=66 Score=29.81 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=15.9
Q ss_pred ccccCCCccccCCCCCcccccccccccccccc
Q 038006 147 WDAKSTDSCFHRGNVNDALDYETGLCENLYRM 178 (808)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (808)
|||..|..-.. +....-+.||-.||||=
T Consensus 49 W~s~~ph~h~~----~~~~~p~~gL~hNYCRN 76 (119)
T 1jfn_A 49 WSSMTPHWHQR----TTEYYPNGGLTRNYCRN 76 (119)
T ss_dssp TTCCSSSCCSS----CGGGCTTTCCCTTCCBC
T ss_pred CcCCCcccccc----ChhhCcccCcCCccccC
Confidence 99887754211 11112245777899983
No 26
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=37.52 E-value=7 Score=41.09 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=25.2
Q ss_pred hhcchhhHHHHHHHHHHhHHh--hhcCCCchHHHHHHHhhcCchh
Q 038006 662 AHSIGRHRDKLITEISKNGRH--LAQDPFGNYVVQYIIELKIPSV 704 (808)
Q Consensus 662 e~as~e~r~~LIeeL~~~l~~--La~DqyGNyVIQkLLe~~~~k~ 704 (808)
+.+++|-...+++.+.+.+.. ...+.-+...+..+.+.+.++.
T Consensus 179 kQGPkEpf~dfVdRl~kalrae~~~~~~~~~~~~~~l~qnAnpdc 223 (262)
T 1d1d_A 179 TQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDI 223 (262)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSSCCTTTTTHHHHHHHTTSSCHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHhhccCcccchhhHHHHHHHhcCHHH
Confidence 345666666777777776655 5555555554544445555543
No 27
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=37.15 E-value=8.9 Score=41.79 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=0.8
Q ss_pred cccccccccCCCCC
Q 038006 64 QHQHQHHNLVGGSP 77 (808)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (808)
||||+||+++-...
T Consensus 5 ~~~~~~~~~~~~~~ 18 (386)
T 1wue_A 5 HHHHHHHGLVPRGS 18 (386)
T ss_dssp ------------CC
T ss_pred cccccccccCCCCC
Confidence 33444667765543
No 28
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=37.14 E-value=7.1 Score=42.86 Aligned_cols=7 Identities=0% Similarity=0.173 Sum_probs=2.6
Q ss_pred ccccccc
Q 038006 225 VEKYSVF 231 (808)
Q Consensus 225 ~~~~~~~ 231 (808)
+..|-+|
T Consensus 125 lLp~LD~ 131 (371)
T 3tla_A 125 LLPFLDY 131 (371)
T ss_dssp GGGGSCH
T ss_pred HHhhcCh
Confidence 3333333
No 29
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=35.31 E-value=7.9 Score=38.26 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=6.5
Q ss_pred ccchhhhhhc
Q 038006 565 EPGQLVRVCL 574 (808)
Q Consensus 565 l~g~iveLa~ 574 (808)
+++++++||.
T Consensus 33 ~RGNViDLAV 42 (174)
T 2oar_A 33 ARGNIVDLAV 42 (174)
T ss_dssp HSCHHHHHHH
T ss_pred HhCChHHHHH
Confidence 3677777665
No 30
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=34.27 E-value=42 Score=26.56 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHhhhhHHHHHHHHhhhhcccccccchh
Q 038006 31 KERMRREEDELGRMLNEITQNQSLSFAHH 59 (808)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (808)
+-.|+|+|.+|.|-+.---+.+|-|..||
T Consensus 20 E~dmEDeeadLrrAiqLSmQGss~~~~~~ 48 (52)
T 2klz_A 20 EIDMEDEEADLRRAIQLSMQGSSRNLEHH 48 (52)
T ss_dssp HHCCSSSHHHHHHHHHHHHTTCCSCCC--
T ss_pred HhccchhHHHHHHHHHHHhhccccchhhc
Confidence 34688888899999888888888665554
No 31
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=33.61 E-value=8.6 Score=40.77 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=7.8
Q ss_pred CCCcccccCCC
Q 038006 99 NTGFCCFSEDD 109 (808)
Q Consensus 99 ~~~~~~~~~~~ 109 (808)
.-||||..-..
T Consensus 24 rlG~~~~~~~~ 34 (301)
T 2j6v_A 24 RLGYPCENLTL 34 (301)
T ss_dssp EEEEESEETTT
T ss_pred EEEEEEEeccC
Confidence 46999977554
No 32
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=32.88 E-value=12 Score=33.51 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=2.7
Q ss_pred ccccCCCCC
Q 038006 69 HHNLVGGSP 77 (808)
Q Consensus 69 ~~~~~~~~~ 77 (808)
||+++.|++
T Consensus 9 ~~~~~~~~~ 17 (95)
T 1t3o_A 9 HHHHSSGHI 17 (95)
T ss_dssp ---CCSCCC
T ss_pred ccccccCCc
Confidence 444444444
No 33
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=31.87 E-value=1.7e+02 Score=30.72 Aligned_cols=193 Identities=10% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh-ccchhhhhhcCcccchhHhHHHh
Q 038006 509 RVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE-EPGQLVRVCLNTYGTRVVQKLIE 587 (808)
Q Consensus 509 klLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~-l~g~iveLa~hkyGcrVVQKLLE 587 (808)
++|-.++|.+.+.+.+++.=. .+.-..... +++.++...++.-.......++. +.+++..+ ..-++|++..++.
T Consensus 42 ~~L~~~sp~q~e~lc~~L~l~--~lsd~~l~~-lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~L~sal~ 116 (264)
T 2ilr_A 42 QLLHECSPSQMDLLCAQLQLP--QLSDLGLLR-LCTWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRLLTTALT 116 (264)
T ss_dssp HGGGGCCHHHHHHHHHHHTGG--GCCHHHHHH-HHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhhc--cCCHHHHHH-HHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhHHHHHHH
Q ss_pred hcCcHHHHHHHHHHhccCccccccccCCchHHHHHH--hhccccchhHHHHHHHHHHHHHHHhcCccchhhHHHHHh---
Q 038006 588 TLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCL--QCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIA--- 662 (808)
Q Consensus 588 ~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkIL--e~~s~~~~~~~~Iie~L~~~lv~LS~~k~GS~VVQkcLe--- 662 (808)
.+........+-..+.|-+..-.....=.-+|.+++ +++.++.... ++..+ +++..+..-.-|++.++.
T Consensus 117 ~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~l--ll~~i----L~l~WtE~~~~Vlq~lL~~k~ 190 (264)
T 2ilr_A 117 SFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVL--MLGQI----LELPWKEETFLVLQSLLERQV 190 (264)
T ss_dssp HHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHH--HHHHH----HHSCCCHHHHHHHHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHH--HHHHH----HhccchHHHHHHHHHHHhcCC
Q ss_pred hcchhhHHHHHHHHHHhHHhhhcCC-CchHHHHHHHhh---cCchhHHHHHHHH
Q 038006 663 HSIGRHRDKLITEISKNGRHLAQDP-FGNYVVQYIIEL---KIPSVSANLLSQF 712 (808)
Q Consensus 663 ~as~e~r~~LIeeL~~~l~~La~Dq-yGNyVIQkLLe~---~~~k~r~~Ii~~L 712 (808)
..+.+....++..+...+..++++- ||+.++.-+=.. ..+.++..+...+
T Consensus 191 ~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~~~i~~~~~~~L~~~l 244 (264)
T 2ilr_A 191 EMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQANITETQRLGLAMAL 244 (264)
T ss_dssp CCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTGGGCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhHHhcCHHHHHHHHHHH
No 34
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=31.21 E-value=10 Score=41.67 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=4.3
Q ss_pred ccccCCCCC
Q 038006 396 FMPVNGAGA 404 (808)
Q Consensus 396 ~~~~~~~~~ 404 (808)
+--++|+|.
T Consensus 341 ~ieVnE~Gt 349 (395)
T 3b9f_I 341 VVEVDESGT 349 (395)
T ss_dssp EEEECSCEE
T ss_pred EEEEcCCCc
Confidence 334555543
No 35
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=30.92 E-value=10 Score=41.94 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=9.9
Q ss_pred cccccccCCCCcccC
Q 038006 194 LKRLDIVDPLGVRFG 208 (808)
Q Consensus 194 ~~~~~~~~~~~~~~~ 208 (808)
+...-.+||....+|
T Consensus 51 ~~~~~~vdpl~lelg 65 (389)
T 3a5i_A 51 WNDVQLEDSLGMEVG 65 (389)
T ss_dssp GGGCCCCCSEEEEEC
T ss_pred HhhccCcccEEEEEC
Confidence 345566788887773
No 36
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=30.88 E-value=10 Score=38.65 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 038006 516 FLDLQIIFDEV 526 (808)
Q Consensus 516 ~Eq~~~I~~eL 526 (808)
+++|..+++++
T Consensus 190 ~~~Rr~~~~~~ 200 (223)
T 3dfz_A 190 KSRKHELLTEI 200 (223)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 37
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=29.93 E-value=12 Score=40.44 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=4.0
Q ss_pred Ccccccc
Q 038006 143 NDMLWDA 149 (808)
Q Consensus 143 ~~~~~~~ 149 (808)
...|||.
T Consensus 61 ta~Wld~ 67 (315)
T 1uoz_A 61 QSYWLDQ 67 (315)
T ss_dssp CCEEECT
T ss_pred eEEecCC
Confidence 4566764
No 38
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=29.62 E-value=14 Score=41.11 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=5.6
Q ss_pred cCCCcccccCC
Q 038006 98 SNTGFCCFSED 108 (808)
Q Consensus 98 ~~~~~~~~~~~ 108 (808)
-++|+-+.||-
T Consensus 32 ~~~~i~V~SE~ 42 (433)
T 4e4j_A 32 LGNGINVYSEI 42 (433)
T ss_dssp ---CCBBCCSS
T ss_pred CCCcceEECCc
Confidence 35667777773
No 39
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=28.32 E-value=18 Score=39.01 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=3.1
Q ss_pred CCCCCC
Q 038006 111 SPFSKP 116 (808)
Q Consensus 111 ~~~~~~ 116 (808)
+.|-+|
T Consensus 30 ~~yvnP 35 (315)
T 1uoz_A 30 PFYVDP 35 (315)
T ss_dssp CBCCCT
T ss_pred ccccCC
Confidence 345555
No 40
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=27.93 E-value=13 Score=41.35 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=0.0
Q ss_pred ccccCCCCC
Q 038006 69 HHNLVGGSP 77 (808)
Q Consensus 69 ~~~~~~~~~ 77 (808)
|||.+|-.+
T Consensus 10 ~~~~~~~~~ 18 (394)
T 2qrj_A 10 HHHSSGHIE 18 (394)
T ss_dssp ---------
T ss_pred ccccCCCCC
Confidence 455444443
No 41
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=27.89 E-value=13 Score=41.99 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=6.9
Q ss_pred cccCCCCccccCc
Q 038006 425 ASKGRDSLKGYKQ 437 (808)
Q Consensus 425 ~~~g~~~~~~f~~ 437 (808)
+.|+..+|+||..
T Consensus 261 ~~r~tlR~~g~~~ 273 (467)
T 2axq_A 261 VIRGTLRYQGFPE 273 (467)
T ss_dssp EEEEEEEETTHHH
T ss_pred eEEEEEEeCCHHH
Confidence 4455555566544
No 42
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=27.84 E-value=13 Score=37.67 Aligned_cols=10 Identities=60% Similarity=1.358 Sum_probs=0.0
Q ss_pred hhhhhccccc
Q 038006 58 HHQHQHQHQH 67 (808)
Q Consensus 58 ~~~~~~~~~~ 67 (808)
||.|.|||||
T Consensus 3 ~~~~~~~~~~ 12 (283)
T 2yln_A 3 HHHHHHHHHH 12 (283)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3333333444
No 43
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=27.48 E-value=13 Score=40.10 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCccc
Q 038006 63 HQHQHQHHNLVGGSPFSR 80 (808)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~ 80 (808)
|||||+|||.+|--|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (344)
T 2bgs_A 3 HHHHHHHHHSSGHIDDDD 20 (344)
T ss_dssp ------------------
T ss_pred ccccccccccCCCCCccH
Confidence 334443556666666554
No 44
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=26.95 E-value=13 Score=35.04 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=0.0
Q ss_pred ccccccccccCCC
Q 038006 63 HQHQHQHHNLVGG 75 (808)
Q Consensus 63 ~~~~~~~~~~~~~ 75 (808)
|||||.||+++.|
T Consensus 3 ~~~~~~~~~~~~~ 15 (132)
T 1yx4_A 3 HHHHHHHHHHSSG 15 (132)
T ss_dssp -------------
T ss_pred ccccccccccccC
No 45
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=26.89 E-value=13 Score=43.33 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHh---hccchhhhhhcCcccch
Q 038006 513 EGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVT---EEPGQLVRVCLNTYGTR 580 (808)
Q Consensus 513 ~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~---~l~g~iveLa~hkyGcr 580 (808)
+.-+..|..+++.+..-+ ..+.=-++.|.++---.++.++....... .+...+..++.++.|.-
T Consensus 386 HtITSVR~AVL~TL~tfL----~~~~LRLIFQNILLE~neeIl~lS~~VWk~r~~Ll~~wi~L~MtPIGv~ 452 (800)
T 3oc3_A 386 SPVPEVRTSILNMVKNLS----EESIDFLVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452 (800)
T ss_dssp CSSHHHHHHHHHHTTTCC----CHHHHHHHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 345666666666554322 33344467777776666666655555453 55666667777776654
No 46
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=26.74 E-value=56 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 038006 14 YQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEI 48 (808)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (808)
|.+.+.+=.+--++ +...|++ .+++-....-|
T Consensus 73 Y~~L~KkYk~~~~~--Ld~eI~~-qe~iI~nFe~I 104 (119)
T 2avr_X 73 YQELASKYEDALKK--LEAEMEQ-QKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHH
Confidence 44444443333333 6666666 44444444444
No 47
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=26.72 E-value=14 Score=38.92 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=7.9
Q ss_pred chhhhhhhhhccc
Q 038006 256 DDERKSLLTAFGG 268 (808)
Q Consensus 256 ~~~~~~~~~~~~~ 268 (808)
+.|+.+...+|+-
T Consensus 94 N~Ei~~ii~alG~ 106 (268)
T 3k9f_C 94 NEEINTMIYTIGA 106 (268)
T ss_dssp CHHHHHHHHHHCS
T ss_pred CHHHHHHHHHhCC
Confidence 3477776666553
No 48
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=26.10 E-value=1.1e+02 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhhhcccc
Q 038006 37 EEDELGRMLNEITQNQS 53 (808)
Q Consensus 37 ~~~~~~~~~~~~~~~~~ 53 (808)
.-.||..+||+.-.-..
T Consensus 34 ~SQeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 34 FSRDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36799999999766443
No 49
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=25.23 E-value=14 Score=39.70 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=5.4
Q ss_pred CCcccccC
Q 038006 100 TGFCCFSE 107 (808)
Q Consensus 100 ~~~~~~~~ 107 (808)
-|+||.+-
T Consensus 24 lGY~c~n~ 31 (310)
T 3tc3_A 24 VGYVSTNY 31 (310)
T ss_dssp EEEESCCT
T ss_pred eeeeeeec
Confidence 38888754
No 50
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=24.94 E-value=15 Score=39.32 Aligned_cols=6 Identities=17% Similarity=-0.224 Sum_probs=2.3
Q ss_pred CCCCCC
Q 038006 111 SPFSKP 116 (808)
Q Consensus 111 ~~~~~~ 116 (808)
+|++++
T Consensus 36 ~~~~~~ 41 (374)
T 2xci_A 36 LKNCKG 41 (374)
T ss_dssp GGGGTT
T ss_pred CCCCCC
Confidence 344333
No 51
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=24.48 E-value=6.7e+02 Score=26.79 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=27.0
Q ss_pred CCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcchHHHHHHHHhhh
Q 038006 687 PFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736 (808)
Q Consensus 687 qyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyGS~VLEKcL~~a 736 (808)
.-|--.+--+|...+....+.|++.|...=.+ .+..|-+++|...
T Consensus 197 ~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpe-----la~~Ir~~MF~Fe 241 (329)
T 3hjl_A 197 LEGTAVAAELLNTLDKETRELILQSIGQEDPL-----LEERIREKMFTFE 241 (329)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHH-----HHHHHHHHHSCGG
T ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHHhCHH-----HHHHHHHHhcCHH
Confidence 44556777778777777777777777644322 3344555555443
No 52
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=24.41 E-value=16 Score=38.87 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCccc
Q 038006 74 GGSPFSR 80 (808)
Q Consensus 74 ~~~~~~~ 80 (808)
=|||.+.
T Consensus 17 ~~~~~~~ 23 (314)
T 3fwy_A 17 HGSPKDL 23 (314)
T ss_dssp -------
T ss_pred cCCCCcC
Confidence 3577664
No 53
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=24.37 E-value=31 Score=34.73 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhcccc
Q 038006 38 EDELGRMLNEITQNQS 53 (808)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (808)
-.|||.-..+|-+.-+
T Consensus 173 ~raLe~~i~~I~~el~ 188 (199)
T 3fyq_A 173 TRAMEATVEAISQEIR 188 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888999976655
No 54
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=24.19 E-value=16 Score=41.63 Aligned_cols=10 Identities=30% Similarity=0.239 Sum_probs=5.4
Q ss_pred ccCccCCceec
Q 038006 311 GRSWSNAGTWL 321 (808)
Q Consensus 311 ~~~~~~~~~~~ 321 (808)
.+-|. .|.+|
T Consensus 309 vGRwk-sGaPL 318 (493)
T 4g2c_A 309 VGRFE-DGTPL 318 (493)
T ss_dssp HSBCT-TCCBT
T ss_pred cCcCC-CCCcC
Confidence 45565 35555
No 55
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=24.09 E-value=16 Score=36.07 Aligned_cols=7 Identities=57% Similarity=0.819 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 038006 672 LITEISK 678 (808)
Q Consensus 672 LIeeL~~ 678 (808)
++.||.+
T Consensus 136 LL~EIRD 142 (174)
T 2oar_A 136 LLTEIRD 142 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 56
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=23.53 E-value=17 Score=39.35 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=5.2
Q ss_pred hhhhhhhhcccc
Q 038006 258 ERKSLLTAFGGQ 269 (808)
Q Consensus 258 ~~~~~~~~~~~~ 269 (808)
+...++..|+++
T Consensus 120 ~i~~~l~~f~G~ 131 (327)
T 1k8w_A 120 QLAAALDTFRGD 131 (327)
T ss_dssp HHHHHHHTTSEE
T ss_pred HHHHHHHhccce
Confidence 344444444443
No 57
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=23.07 E-value=21 Score=38.66 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.1
Q ss_pred CCCccccccchhc
Q 038006 114 SKPNNVLYNDSVE 126 (808)
Q Consensus 114 ~~~~~~~~~~~~~ 126 (808)
-+|..+--+|-|.
T Consensus 31 dKP~G~TS~dvv~ 43 (327)
T 1k8w_A 31 DKPQGMSSNDALQ 43 (327)
T ss_dssp EECTTCCHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3444444455443
No 58
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=22.99 E-value=18 Score=40.42 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.8
Q ss_pred ceeccCCc
Q 038006 318 GTWLQNPS 325 (808)
Q Consensus 318 ~~~~~~~~ 325 (808)
.+++..|.
T Consensus 184 ~Vlv~~p~ 191 (500)
T 3tcm_A 184 GILVPIPQ 191 (500)
T ss_dssp EEEEEESC
T ss_pred EEEEeCCC
Confidence 34444454
No 59
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=22.37 E-value=18 Score=41.96 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=0.0
Q ss_pred ccccccccccCCC
Q 038006 63 HQHQHQHHNLVGG 75 (808)
Q Consensus 63 ~~~~~~~~~~~~~ 75 (808)
|||||+|||++.|
T Consensus 3 ~~~~~~~~~~~~~ 15 (591)
T 3b0g_A 3 HHHHHHHHHHSSG 15 (591)
T ss_dssp -------------
T ss_pred ccccccccccccc
No 60
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=22.37 E-value=19 Score=35.51 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhh
Q 038006 38 EDELGRMLNEIT 49 (808)
Q Consensus 38 ~~~~~~~~~~~~ 49 (808)
-+.|.+.|++.+
T Consensus 141 ae~la~fi~~~t 152 (178)
T 3ga4_A 141 TLQFGDFLAKIL 152 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 455666666654
No 61
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=22.23 E-value=19 Score=40.04 Aligned_cols=10 Identities=60% Similarity=1.238 Sum_probs=0.0
Q ss_pred chhhhhcccc
Q 038006 57 AHHQHQHQHQ 66 (808)
Q Consensus 57 ~~~~~~~~~~ 66 (808)
+||.|+||||
T Consensus 498 ~~~~~~~~~~ 507 (510)
T 4grv_A 498 AHHHHHHHHH 507 (510)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4554444433
No 62
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=22.19 E-value=19 Score=35.23 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=0.0
Q ss_pred ccccccccccCCC
Q 038006 63 HQHQHQHHNLVGG 75 (808)
Q Consensus 63 ~~~~~~~~~~~~~ 75 (808)
|||||+||+++.|
T Consensus 3 ~~~~~~~~~~~~~ 15 (185)
T 4b1m_A 3 HHHHHHHHHHSSG 15 (185)
T ss_dssp -------------
T ss_pred ccccccccccccc
No 63
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=22.18 E-value=80 Score=30.55 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 038006 10 AGQKYQEKIEQRAEKEEKR 28 (808)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ 28 (808)
..+.+++.++++++.|.++
T Consensus 114 ~p~ev~~a~~~~~~Aere~ 132 (188)
T 3bk6_A 114 LPAGMQKAMARQAEAERER 132 (188)
T ss_dssp EETTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3567888888887776664
No 64
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=22.08 E-value=19 Score=39.43 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=11.3
Q ss_pred CCcccCcccCCCCCCCC
Q 038006 203 LGVRFGFTSDASLGGSV 219 (808)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ 219 (808)
..++++||=|--..|-+
T Consensus 93 ~KvGH~GTLDP~AtGvL 109 (357)
T 2apo_A 93 DKAGHGGTLDPKVTGVL 109 (357)
T ss_dssp SCEEESSCCCTTCEEEE
T ss_pred cccccccccCCCceeEE
Confidence 45677777777666654
No 65
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=21.87 E-value=19 Score=39.14 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=0.0
Q ss_pred cccccccccCCCCCc
Q 038006 64 QHQHQHHNLVGGSPF 78 (808)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (808)
||||+|||++|--|-
T Consensus 2 ~~~~~~~~~~~~~~~ 16 (386)
T 1wue_A 2 HHHHHHHHHHGLVPR 16 (386)
T ss_dssp ---------------
T ss_pred CCccccccccccCCC
Confidence 677766677665553
No 66
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=21.71 E-value=34 Score=35.74 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhc
Q 038006 38 EDELGRMLNEITQ 50 (808)
Q Consensus 38 ~~~~~~~~~~~~~ 50 (808)
.+|++.=|++|..
T Consensus 231 re~ie~ri~kl~e 243 (255)
T 3icx_A 231 NEQLKKRIDEIKE 243 (255)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 4566666666643
No 67
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=21.65 E-value=27 Score=30.61 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=9.3
Q ss_pred ccccCCCCCccce
Q 038006 69 HHNLVGGSPFSRV 81 (808)
Q Consensus 69 ~~~~~~~~~~~~~ 81 (808)
||+++|+..+..+
T Consensus 8 ~~~~~~~~~~~~i 20 (121)
T 2j23_A 8 HHHLVPRGSVQVI 20 (121)
T ss_dssp CCCCCCCCCEEEC
T ss_pred cccccCCcceEEc
Confidence 6778888776653
No 68
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=21.20 E-value=20 Score=33.80 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=10.7
Q ss_pred ccccccccccchhhhhhhhhc
Q 038006 246 SSHTAVSKSFDDERKSLLTAF 266 (808)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ 266 (808)
+++.+.-|-|.+-..++...|
T Consensus 99 ~a~vk~KMlYASsk~~lk~~l 119 (139)
T 2l72_A 99 NAPVKPRMTYASSKDALLKKL 119 (139)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHeeehHhhHHHHHHHh
Confidence 344444455666555554333
No 69
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=20.32 E-value=19 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=6.8
Q ss_pred CCCCccccccchhccccccccc
Q 038006 113 FSKPNNVLYNDSVENANKYKTR 134 (808)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~ 134 (808)
+|+--|.|-+..-.-..+|+|+
T Consensus 26 lek~f~~l~~~~~~~~k~ytt~ 47 (800)
T 3oc3_A 26 LEKFFTTLNTAQSKVLKGYTTD 47 (800)
T ss_dssp -------CHHHHHHHHHCCCSS
T ss_pred HHHHHHHhhcCChHHHHHhhHH
Confidence 4555444444333333456654
No 70
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=20.26 E-value=58 Score=30.33 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhcccccccc
Q 038006 11 GQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFA 57 (808)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (808)
|...-+.|.+.|+.-..-|..|- +.|+++.|---+-...|
T Consensus 71 ~~~l~~~ir~~a~~~~~s~~~ei-------~~r~~~~~~~~~~~~~~ 110 (120)
T 1u9p_A 71 GREVLDLVRKVAEENGRSVNSEI-------YQRVMESFKKEGRIGAH 110 (120)
T ss_dssp SHHHHHHHHHHHHHHTCCHHHHH-------HHHHHHHHHHTTCC---
T ss_pred chHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHhhhhhccch
Confidence 44566677777766655444443 45677777777765533
No 71
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=20.15 E-value=22 Score=38.82 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=0.0
Q ss_pred cccccccccCCCCCccc
Q 038006 64 QHQHQHHNLVGGSPFSR 80 (808)
Q Consensus 64 ~~~~~~~~~~~~~~~~~ 80 (808)
||||+|||++|=-|-+.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (393)
T 1wuf_A 2 HHHHHHHHHHGLVPRGS 18 (393)
T ss_dssp -----------------
T ss_pred CCccccccccCccCCCC
Confidence 67777777777666544
Done!