BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038007
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41
PE=2 SV=1
Length = 263
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 159/235 (67%), Gaps = 18/235 (7%)
Query: 1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
MR+SCNGCRVLRKGC E+CSIRPCL WIKSP+ QANAT+FLAKFYGRAGL+NLINAGP
Sbjct: 1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60
Query: 61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV +++++A
Sbjct: 61 LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120
Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEP 172
L+ DIRH+SKD++SAAAA S L K+RR KR S +++ E +D
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD------ 174
Query: 173 LLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGS-DVDLELSL 226
+ S S S E+ GE S V LA + GS ++ L+L+L
Sbjct: 175 --EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226
>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40
PE=2 SV=1
Length = 233
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/141 (73%), Positives = 119/141 (84%), Gaps = 10/141 (7%)
Query: 1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
MR+SCNGCRVLRKGC ENCSIRPCLQWIKS + QANAT+FLAKFYGRAGL+NL+N GP
Sbjct: 1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60
Query: 61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL-- 118
LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+
Sbjct: 61 LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120
Query: 119 -------QAGDIRHV-SKDES 131
+ DIRHV S+DE+
Sbjct: 121 QAPPFNNKLCDIRHVSSRDEN 141
>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42
PE=2 SV=1
Length = 233
Score = 207 bits (528), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 123/169 (72%), Gaps = 15/169 (8%)
Query: 1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
MR+SCNGCRVLRKGC ++C+IRPCLQWIKS QANATLFLAKFYGRAGL+NLI +GP
Sbjct: 1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60
Query: 61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPV--TPLSSESA- 117
LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W CQAAV+AV G P+ TPL S SA
Sbjct: 61 LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120
Query: 118 ------LQAGDIRHVSKDESSAA------AAAVSDKLHKVKSRRFKRSA 154
+ DIRHV+KD ++ A V+ K ++ RFKR +
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRES 169
>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38
PE=2 SV=1
Length = 247
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 93/110 (84%)
Query: 3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
+SCNGCRVLRKGC ENC +RPC+QWI+SP+ Q +AT+F+AKF+GRAGL++ I+A P+
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60
Query: 63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG + P+
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110
>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37
PE=2 SV=1
Length = 250
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 91/110 (82%)
Query: 3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
+SCNGCRVLRKGC ENC +RPC+QWI++ Q +AT+F+AKF+GRAGL++ I+A P R
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60
Query: 63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
PA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG + P+
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110
>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39
PE=2 SV=1
Length = 240
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 3/130 (2%)
Query: 3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
+SCNGCRVLRKGC E C +RPCLQWI+S + Q +AT+F+AKF+GRAGL++ I++ P+ R
Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60
Query: 63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGD 122
PA+F+SLL+EACGR VNP+ G+VG++W+ WH+CQAAVE V RG + P+S L
Sbjct: 61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISD---LLESP 117
Query: 123 IRHVSKDESS 132
+S DESS
Sbjct: 118 SLMISCDESS 127
>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10
PE=2 SV=1
Length = 311
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C + C P P +F+ + +G + + ++N P D R
Sbjct: 6 CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95
SL YEA RI +PIYG VGL+ + +L
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLISFLQQYL 91
>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36
PE=2 SV=1
Length = 313
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C + C P P Q F+ K +G + + L+N + R
Sbjct: 8 CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA R+ +P+YG VGL+
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLI 86
>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1
PE=2 SV=1
Length = 190
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C E C + P P A T+ + +G + ++ + P+ R
Sbjct: 34 CAACKILRRRCAERCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMW 89
S++YEA RI +P+YG G ++
Sbjct: 89 AVNSMVYEAEARIRDPVYGCAGAIY 113
>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11
PE=2 SV=2
Length = 232
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C + C + P P A T+ + +G + ++ + P+ R
Sbjct: 56 CAACKILRRRCADKCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 110
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMW 89
S++YEA R+ +P+YG G ++
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIY 135
>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4
PE=2 SV=1
Length = 172
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C ++C P PQ AN + + +G + + ++ P R
Sbjct: 14 CAACKLLRRRCAQDCVFSPYFP-ADEPQKFAN----VHRVFGASNVNKMLQELPIHQRGD 68
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWS 90
S++YEA R+ +P+YG VG + S
Sbjct: 69 AVSSMVYEANARVRDPVYGCVGAISS 94
>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14
PE=2 SV=1
Length = 188
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLA--KFYGRAGLVNLINAGPQDLR 62
C GC+ LR+ C E C P + + ++ F A K +G + LI+ P R
Sbjct: 8 CGGCKFLRRKCVEGCVFAPYFCY------EEGSSNFAAIHKVFGASNFSKLISHLPDHDR 61
Query: 63 PAIFKSLLYEACGRIVNPIYGSVGLMWS 90
+++ YEA R+ +PIYG V ++S
Sbjct: 62 CDAVRTISYEAHSRLHDPIYGCVSQIFS 89
>sp|Q9SRL8|LBD21_ARATH LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21
PE=2 SV=1
Length = 165
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
SC C++L++ C C P + +S A + K +G + + L+ P++ R
Sbjct: 11 SCAACKLLKRRCTPTCIFAP---YFRSSDLITFAKVH--KVFGASNVSKLLGEVPEEQRQ 65
Query: 64 AIFKSLLYEACGRIVNPIYGSVGLMWS 90
SL YEA R+ +P+YG +G + S
Sbjct: 66 ETVNSLAYEAEVRLKDPVYGCIGAIAS 92
>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12
PE=2 SV=2
Length = 193
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C ++C P P + + K +G + + ++ P R
Sbjct: 9 CASCKLLRRRCAKDCIFAPYF-----PPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 63
Query: 65 IFKSLLYEACGRIVNPIYGSVG 86
SL++EA R+ +P+YG VG
Sbjct: 64 AVNSLVFEANARVRDPVYGCVG 85
>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31
PE=2 SV=2
Length = 220
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P + S + ++ T + K +G + L+ P R
Sbjct: 12 CGACKFLRRKCVADCVFAP---YFDSVEGTSHFTA-VHKVFGASNASKLLMMIPASRRLD 67
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIR 124
+L YEA R+ +P+YG VG +++ + + E + T LS+ L + +
Sbjct: 68 AVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQ---TQLSTLQGLPPPNSQ 124
Query: 125 HVSKDESSAAA 135
+ S+ E+++++
Sbjct: 125 NNSRTEAASSS 135
>sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15
PE=2 SV=2
Length = 224
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C + C P SP + + + K +G + + ++ P+ R
Sbjct: 46 CAACKLLRRRCAQECPFSPYF----SPH-EPHKFASVHKVFGASNVSKMLMEVPESQRAD 100
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL+YEA R+ +P+YG +G +
Sbjct: 101 AANSLVYEANVRLRDPVYGCMGAI 124
>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3
PE=2 SV=1
Length = 165
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 5 CNGCRVLRKGC-GENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
C GC++LR+ C ++C P P + + K +G + + ++ ++ R
Sbjct: 15 CAGCKLLRRKCVKDSCVFAPYF-----PAKEPYKFAIVHKIFGASNVNKMLQELSENHRS 69
Query: 64 AIFKSLLYEACGRIVNPIYGSVGLMWS 90
S++YEA RI +P+YG VG + S
Sbjct: 70 DAVDSMVYEANARIQDPVYGCVGTISS 96
>sp|O04479|LBD6_ARATH LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6
PE=1 SV=1
Length = 199
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C C P PQ AN + K +G + + L+N R
Sbjct: 10 CAACKFLRRKCQPECVFAPYFPP-DQPQKFAN----VHKVFGASNVTKLLNELHPSQRED 64
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA R+ +P+YG VG++
Sbjct: 65 AVNSLAYEADMRLRDPVYGCVGVI 88
>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13
PE=2 SV=2
Length = 268
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C++LR+ C E C P SP + + + K +G + + ++ + R
Sbjct: 53 CAACKLLRRRCAEECPFSPYF----SPH-EPHKFAAVHKVFGASNVSKMLLEVGESQRGD 107
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95
SL+YEA R+ +PIYG +G + + + H+
Sbjct: 108 AANSLVYEANLRLRDPIYGCMGAISALQHHI 138
>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33
PE=2 SV=1
Length = 177
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
SC C+ LR+ C +C P + ++ A + K +G + + + PQ R
Sbjct: 7 SCGACKFLRRKCNRDCVFSPYFSYEQASSHFAA----VHKVFGASNVSKHLLHLPQHQRN 62
Query: 64 AIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLS 113
++ YEA R+ +P+YG V +++ + E F G + S
Sbjct: 63 IAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFS 112
>sp|P59467|LBD23_ARATH LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23
PE=2 SV=1
Length = 121
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C ++C P P + + YG + ++ P R
Sbjct: 6 CAACKYLRRRCPKDCVFSPYF-----PPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
+SL +EA R+ +P+YG VG++
Sbjct: 61 AVESLCFEAKCRVDDPVYGCVGII 84
>sp|P59468|LBD24_ARATH LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24
PE=2 SV=1
Length = 121
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C ++C P P + + YG + ++ P R
Sbjct: 6 CAACKYLRRRCPKDCVFSPYF-----PPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAE 60
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
+SL +EA R+ +P+YG VG++
Sbjct: 61 AVESLCFEAKCRVDDPVYGCVGII 84
>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16
PE=2 SV=1
Length = 245
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P + S Q A + K +G + + L+ P R
Sbjct: 16 CGACKFLRRKCASDCIFAP---YFSSEQGAARFAA-IHKVFGASNVSKLLLNVPIHDRCE 71
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQ----A 120
++ YEA R+ +P+YG V H+ + F V + ++ A A
Sbjct: 72 AVVTIAYEAQARLHDPVYGCVS-------HIFALQQQVAFLQSQVMQMKAQIAGHQTSAA 124
Query: 121 GDIRHVSK 128
GD+RH S+
Sbjct: 125 GDLRHSSE 132
>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30
PE=2 SV=1
Length = 228
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 7 GCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIF 66
C+ LR+ C C P + S Q A+ + K +G + + L++ P+ RP
Sbjct: 20 ACKFLRRKCVAGCIFAP---YFDSEQGAAHFAA-VHKVFGASNVSKLLHHVPEHKRPDAV 75
Query: 67 KSLLYEACGRIVNPIYGSVGLMWS 90
S+ +EA R+ +PIYG V + S
Sbjct: 76 VSICFEAQARLRDPIYGCVSHIVS 99
>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB
PE=2 SV=1
Length = 186
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C C P + P AN + K +G + + L+N R
Sbjct: 12 CAACKFLRRKCMPGCIFAPYFP-PEEPHKFAN----VHKIFGASNVTKLLNELLPHQRED 66
Query: 65 IFKSLLYEACGRIVNPIYGSVG 86
SL YEA R+ +P+YG VG
Sbjct: 67 AVNSLAYEAEARVRDPVYGCVG 88
>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19
PE=2 SV=1
Length = 191
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 7 GCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIF 66
C+ LR+ C + C P + + Q A + K +G + ++ P R
Sbjct: 19 ACKFLRRKCVKGCVFAP---YFDAEQGTARFAA-VHKVFGASNASKMLLRLPLHKRLDAV 74
Query: 67 KSLLYEACGRIVNPIYGSVGLMWS 90
+L YEA RI +P+YGSVG ++S
Sbjct: 75 VTLCYEAMARIRDPVYGSVGHLFS 98
>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1
Length = 269
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P P + + + +G + + L+N R
Sbjct: 34 CAACKFLRRKCQPDCVFAPYF-----PPDNPQKFVRVHRVFGASNVTKLMNEIHPLQRED 88
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA RI +P+YG VG++
Sbjct: 89 AMNSLAYEADMRIRDPVYGCVGVI 112
>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1
Length = 260
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P P + + + +G + + L+N R
Sbjct: 34 CAACKFLRRKCQPDCVFAPYF-----PPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA R+ +P+YG VG++
Sbjct: 89 AVNSLAYEADMRLRDPVYGCVGVI 112
>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20
PE=2 SV=1
Length = 273
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLA--KFYGRAGLVNLINAGPQDLR 62
C C+ LR+ C C P S Q A F A K +G + + L++ P + R
Sbjct: 52 CGACKFLRRKCVSGCIFAP---HFGSDQ---GAARFAAVHKVFGASNVSKLLHHIPVNRR 105
Query: 63 PAIFKSLLYEACGRIVNPIYGSVGLMWS 90
++ YEA R+ +P+YG V + +
Sbjct: 106 HDAVVTISYEAQARLSDPVYGCVSTILA 133
>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25
PE=2 SV=3
Length = 159
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P + P AN + + +G + + +++ R
Sbjct: 40 CAACKFLRRKCTSDCVFAPYFPP-EEPTKFAN----VHRIFGASNVSKILHEVAPHQRED 94
Query: 65 IFKSLLYEACGRIVNPIYGSVG 86
SL YEA R+ +P+YG VG
Sbjct: 95 AVNSLAYEAEARLKDPVYGCVG 116
>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29
PE=2 SV=1
Length = 218
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQAN-ATLFLA--KFYGRAGLVNLINAGPQDL 61
C C+ LR+ C + C P C A+ F A K +G + L++ P
Sbjct: 12 CGACKFLRRKCAKGCVFAPYF-------CHEQGASHFAAIHKVFGASNASKLLSHLPISD 64
Query: 62 RPAIFKSLLYEACGRIVNPIYGSVGLMWS 90
R ++ YEA R+ +PIYG V +++
Sbjct: 65 RCEAAITISYEAQARLQDPIYGCVSHIFA 93
>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica
GN=LBD6 PE=2 SV=1
Length = 269
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P P + + + +G + + L+N R
Sbjct: 39 CAACKFLRRKCQPDCVFAPYF-----PPDNPQKFVHVHRVFGASNVTKLLNELHPYQRED 93
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA R+ +P+YG V ++
Sbjct: 94 AVNSLAYEADMRLRDPVYGCVAII 117
>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica
GN=LBD6 PE=3 SV=1
Length = 269
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C +C P P + + + +G + + L+N R
Sbjct: 39 CAACKFLRRKCQPDCVFAPYF-----PPDNPQKFVHVHRVFGASNVTKLLNELHPYQRED 93
Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
SL YEA R+ +P+YG V ++
Sbjct: 94 AVNSLAYEADMRLRDPVYGCVAII 117
>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18
PE=2 SV=2
Length = 262
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 7 GCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIF 66
C+ LR+ C C P + S Q A + K +G + + L+ P R
Sbjct: 40 ACKFLRRKCVPGCIFAP---YFDSEQGSAYFAA-VHKVFGASNVSKLLLHIPVHRRSDAV 95
Query: 67 KSLLYEACGRIVNPIYGSVGLMWS 90
++ YEA RI +PIYG V +++
Sbjct: 96 VTICYEAQARIRDPIYGCVAHIFA 119
>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17
PE=2 SV=1
Length = 244
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQAN-ATLFLA--KFYGRAGLVNLINAGPQDL 61
C C+ LR+ C + C P C A+ F A + +G + L++ P +
Sbjct: 8 CGACKFLRRRCVKGCVFAPYF-------CHEQGASHFAAIHQVFGASNASKLLSHLPMED 60
Query: 62 RPAIFKSLLYEACGRIVNPIYGSVGLMWS 90
R ++ YEA R +PIYG V ++S
Sbjct: 61 RREAATTIYYEAQARRQDPIYGCVSHIFS 89
>sp|Q9STS6|LBD27_ARATH LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27
PE=2 SV=1
Length = 328
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
+C C+ R+ C +C + P P Q + + +G +V ++ + +P
Sbjct: 36 ACAACKYQRRRCAADCPLAPYF-----PAEQPKLFQNVHRLFGVRSIVKILEKLDETQKP 90
Query: 64 AIFKSLLYEACGRIVNPIYGSVGL 87
KS+++++ R +P++G +G+
Sbjct: 91 EAMKSIIFQSYVRDRSPVHGCLGV 114
>sp|Q9LNB9|LBD2_ARATH LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2
PE=2 SV=2
Length = 206
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
+C C+ RK C C + P K+ + QA + K +G + + ++ ++ R
Sbjct: 24 ACASCKHQRKKCNNECILSPYFPARKTKEFQA-----VHKVFGVSNVQKMVRTVREEDRT 78
Query: 64 AIFKSLLYEACGRIVNPIYGSVG 86
+ SL +EA R +P+ GS G
Sbjct: 79 KLSDSLTWEALWRQKDPVLGSYG 101
>sp|Q9SCS4|LBD28_ARATH LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28
PE=2 SV=1
Length = 198
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
C C+ LR+ C E+C P K +A + K +G + + LIN+ R
Sbjct: 13 CAACKHLRRKCTEDCVFAPYFPSTKLDNYEA-----VHKVFGASHVATLINSLHPCQREF 67
Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWS 90
+L +EA + +P+ G +G++++
Sbjct: 68 AMDTLAWEAQVQANDPVNGCLGIIYN 93
>sp|Q9SSM9|LBD7_ARATH LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7
PE=2 SV=1
Length = 214
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
+C C+ RK C +NC + PQ N L K +G + + ++ + R
Sbjct: 12 TACAACKHQRKKCKKNCILARYF-----PQDGTNKFLNAHKLFGVSNITKMLKRIEESQR 66
Query: 63 PAIFKSLLYEACGRIVNPIYG 83
++L+Y A R ++P+ G
Sbjct: 67 DIAMENLIYHANARALDPVGG 87
>sp|Q1JP73|CI064_BOVIN UPF0553 protein C9orf64 homolog OS=Bos taurus PE=2 SV=1
Length = 341
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 83 GSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAAAVSDKL 142
G G +SG W LC A A+ G P+T S + + ++RH+ + ++ + ++
Sbjct: 90 GFGGKTYSGYWSLCAAVNRALDEGIPITSASYYATVTLDEVRHILRSDTDVPMPLIEER- 148
Query: 143 HKV 145
H++
Sbjct: 149 HRI 151
>sp|Q5T6V5|CI064_HUMAN UPF0553 protein C9orf64 OS=Homo sapiens GN=C9orf64 PE=1 SV=1
Length = 341
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 86 GLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAAAVSDKLHKV 145
G +SG W LC A A+ G P+T S + + +R++ + ++ + V ++ H++
Sbjct: 93 GKTYSGYWSLCAAVNRALDEGIPITSASYYATVTLDQVRNILRSDTDVSMPLVEER-HRI 151
>sp|Q9FFL3|LBD35_ARATH LOB domain-containing protein 35 OS=Arabidopsis thaliana GN=LBD35
PE=2 SV=1
Length = 206
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLI-NAGPQDLRP 63
C+ C+V++ C NC P P L + +G + ++ N P
Sbjct: 6 CSACKVMKCDCAPNCIFAP-----HFPLTNLETFERLHRIFGAGNVFKILANLDPIQRET 60
Query: 64 AIFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95
A+ +L YEA +PI+G VG+ + L
Sbjct: 61 AV-NALCYEAEALERDPIFGCVGIFNHYKNQL 91
>sp|Q8UA86|RBSA1_AGRT5 Ribose import ATP-binding protein RbsA 1 OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rbsA1 PE=3 SV=2
Length = 510
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 81 IYGSVGLMWSGRWHLCQ--------AAVEAVFRGEPVTPLSSESALQAG 121
I G GL+ +GR LCQ A+ E G+P+T S E A++AG
Sbjct: 296 ILGLYGLIGAGRSELCQSLFGITRPASGEVTLDGQPLTIRSPEDAIRAG 344
>sp|F1MRW8|RN169_BOVIN E3 ubiquitin-protein ligase RNF169 OS=Bos taurus GN=RNF169 PE=3
SV=3
Length = 689
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 79 NPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAAAV 138
NPI +G++ S R H C +A + E P SS SAL + + S + ++
Sbjct: 304 NPI---IGVLLSTRNHRCLSAPDLTV--EKRLPFSSLSAL--ASLHKPERSISPESNDSI 356
Query: 139 SDKLHKVKSRRFKRSAPKPRSKPERAADAKVVEPLLDNS 177
S++L+ FK P + P+R D +V+ PL+ S
Sbjct: 357 SEELN-----HFKPIVCSPCTPPKRLPDGRVLSPLIIKS 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,161,212
Number of Sequences: 539616
Number of extensions: 3453388
Number of successful extensions: 10142
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 10069
Number of HSP's gapped (non-prelim): 83
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)