Query 038007
Match_columns 230
No_of_seqs 131 out of 296
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 4.7E-46 1E-50 292.1 9.2 101 4-109 1-101 (101)
2 PF14653 IGFL: Insulin growth 21.9 47 0.001 26.5 1.1 14 13-26 43-56 (89)
3 PRK00451 glycine dehydrogenase 20.8 66 0.0014 29.9 2.0 35 22-62 2-36 (447)
4 PF04706 Dickkopf_N: Dickkopf 20.2 53 0.0011 23.5 0.9 16 3-18 21-36 (52)
5 PF03242 LEA_3: Late embryogen 19.9 42 0.00091 26.6 0.4 20 70-89 58-77 (93)
6 PF15300 INT_SG_DDX_CT_C: INTS 19.2 64 0.0014 24.2 1.2 30 45-74 18-51 (65)
7 PF05965 FYRC: F/Y rich C-term 15.6 1.1E+02 0.0023 22.8 1.7 22 41-62 53-76 (86)
8 PF00172 Zn_clus: Fungal Zn(2) 14.0 89 0.0019 20.3 0.8 15 3-17 1-15 (40)
9 PHA02616 VP2/VP3; Provisional 12.5 1.9E+02 0.0041 26.8 2.7 58 76-133 88-158 (259)
10 smart00542 FYRC "FY-rich" doma 11.1 1.6E+02 0.0035 22.3 1.6 21 42-62 50-72 (86)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=4.7e-46 Score=292.12 Aligned_cols=101 Identities=26% Similarity=0.538 Sum_probs=94.8
Q ss_pred CChhhhhccCCCCCCCccccCCCCCCCchhhhhHHHHHHHHhccccHHHHHHcCCCCChHHHHHHhHHhhcccccCCCCc
Q 038007 4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYG 83 (230)
Q Consensus 4 ~CAACK~lRRrC~~dCilAPYFP~~~~pe~qana~~fvhKvFG~sNv~klL~~lp~~~R~~a~~SLvYEA~aR~~DPVyG 83 (230)
+|||||||||+|+++|+|||||| ..+.+.|.+||||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP-----~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G 75 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFP-----ADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG 75 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCC-----hhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence 79999999999999999999999 3445677889999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCC
Q 038007 84 SVGLMWSGRWHLCQAAVEAVFRGEPV 109 (230)
Q Consensus 84 cvGiI~~Lq~Ql~q~avEavl~g~~i 109 (230)
|+|+||.|||||++.++|+++.+..|
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999877654
No 2
>PF14653 IGFL: Insulin growth factor-like family
Probab=21.87 E-value=47 Score=26.52 Aligned_cols=14 Identities=43% Similarity=1.384 Sum_probs=13.0
Q ss_pred CCCCCCCccccCCC
Q 038007 13 KGCGENCSIRPCLQ 26 (230)
Q Consensus 13 RrC~~dCilAPYFP 26 (230)
++|..+|.|.|+|.
T Consensus 43 ~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 43 RKCGPNCTFWPCFE 56 (89)
T ss_pred cccCCCCCccCccc
Confidence 78999999999997
No 3
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=20.78 E-value=66 Score=29.86 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred ccCCCCCCCchhhhhHHHHHHHHhccccHHHHHHcCCCCCh
Q 038007 22 RPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62 (230)
Q Consensus 22 APYFP~~~~pe~qana~~fvhKvFG~sNv~klL~~lp~~~R 62 (230)
-||.| .+|+... .+-+.||.++|-.++..+|.+.|
T Consensus 2 ~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIP--HTEEDIR----EMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCC--CCHHHHH----HHHHHhCCCCHHHHHHhCCHHHH
Confidence 38998 3455443 36799999999887776665443
No 4
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=20.17 E-value=53 Score=23.53 Aligned_cols=16 Identities=38% Similarity=0.796 Sum_probs=14.2
Q ss_pred CCChhhhhccCCCCCC
Q 038007 3 VSCNGCRVLRKGCGEN 18 (230)
Q Consensus 3 ~~CAACK~lRRrC~~d 18 (230)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 4699999999999976
No 5
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=19.88 E-value=42 Score=26.62 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.4
Q ss_pred HHhhcccccCCCCchhhhhh
Q 038007 70 LYEACGRIVNPIYGSVGLMW 89 (230)
Q Consensus 70 vYEA~aR~~DPVyGcvGiI~ 89 (230)
-+|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 66778999999999986554
No 6
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=19.24 E-value=64 Score=24.20 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=24.8
Q ss_pred hcc--ccHHHHHHcC--CCCChHHHHHHhHHhhc
Q 038007 45 YGR--AGLVNLINAG--PQDLRPAIFKSLLYEAC 74 (230)
Q Consensus 45 FG~--sNv~klL~~l--p~~~R~~a~~SLvYEA~ 74 (230)
+|. +.|.++|+.+ |.+.|...+..++.||.
T Consensus 18 pGr~ye~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 18 PGRNYEKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred cCCcHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 454 4688889875 78999999999999995
No 7
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=15.64 E-value=1.1e+02 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHHHhcccc--HHHHHHcCCCCCh
Q 038007 41 LAKFYGRAG--LVNLINAGPQDLR 62 (230)
Q Consensus 41 vhKvFG~sN--v~klL~~lp~~~R 62 (230)
-+.+||.++ |.++|++||-.++
T Consensus 53 G~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 53 GPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred HhHhcCCCCHHHHHHHHhCCCcch
Confidence 478999865 8999999997654
No 8
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=14.02 E-value=89 Score=20.30 Aligned_cols=15 Identities=27% Similarity=0.767 Sum_probs=10.7
Q ss_pred CCChhhhhccCCCCC
Q 038007 3 VSCNGCRVLRKGCGE 17 (230)
Q Consensus 3 ~~CAACK~lRRrC~~ 17 (230)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 379999999999986
No 9
>PHA02616 VP2/VP3; Provisional
Probab=12.49 E-value=1.9e+02 Score=26.76 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.3
Q ss_pred cccCCCCchhhhhhhhhHHHHHHHHHHHHcCCCCccCCchhhh-------------cccccccccCCcchh
Q 038007 76 RIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL-------------QAGDIRHVSKDESSA 133 (230)
Q Consensus 76 R~~DPVyGcvGiI~~Lq~Ql~q~avEavl~g~~i~~~~~~~~~-------------~~~dirh~~~~~~~~ 133 (230)
-.-|||.|.+-.+.++-.--.+-..-+++-|.|+...-...++ --||.-..-+|.+.+
T Consensus 88 gesDPVnaiv~qVrs~v~~~RerEllqi~aGqPld~s~gvsa~~~a~~~l~~a~ynf~YDas~LP~dGfNa 158 (259)
T PHA02616 88 GESDPVNAIVNQVRSAVTYNRERELLQILAGQPLDESRGVSALSAAAGALTEAAYNFIYDASNLPKDGFNA 158 (259)
T ss_pred CCCChHHHHHHHHHHHHhhhhhHHHHHHHcCCCccCCCCeehhhhhhhhhhhhhhhhhcccccCCCcCccc
Confidence 3579999998888776544444456778999998854433321 257777777777754
No 10
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=11.10 E-value=1.6e+02 Score=22.28 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=16.6
Q ss_pred HHHhcccc--HHHHHHcCCCCCh
Q 038007 42 AKFYGRAG--LVNLINAGPQDLR 62 (230)
Q Consensus 42 hKvFG~sN--v~klL~~lp~~~R 62 (230)
..+||.++ |+++|++||..++
T Consensus 50 ~~mFGls~p~V~~lie~Lpga~~ 72 (86)
T smart00542 50 EDMFGLSSPAVVKLIEQLPGVHQ 72 (86)
T ss_pred HHHhCCCcHHHHHHHHhCCCchh
Confidence 46888865 8999999997553
Done!